ncbi_organism_name: Marinobacter salarius

ncbi_submitter: WELLCOME SANGER INSTITUTE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 252

ncbi_submitter: DOE Joint Genome Institute


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Nitrospinales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Limosilactobacillus fermentum


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_level: Chromosome

ncbi_organism_name: Saprospiraceae bacterium


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: India: Gulf of Kutch

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Eggerthella lenta


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Nocardia sp. CA-136227

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Eubacteriales bacterium


ncbi_country: Antarctica: Western Antarctica; Livingston Island

ncbi_isolate: LIV bin9

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: LIV bin9

ncbi_submitter: Monash University


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Technische Universiteit Delft


ncbi_organism_name: Gibbsiella greigii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin60

ncbi_strain_identifiers: MDV bin60


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_02_FULL_43_17


ncbi_country: Israel

ncbi_isolation_source: contaminated water

ncbi_organism_name: Rhodococcus sp. YH1

ncbi_submitter: Ben-Gurion University of the Negev

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. YH1


ncbi_country: China: Chongqing

ncbi_organism_name: Staphylococcus ureilyticus

ncbi_submitter: University-Town Hospital of Chongqing Medical University


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: brain abscess

ncbi_organism_name: Staphylococcus massiliensis CCUG 55927

ncbi_submitter: Modernising Medical Microbiology

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: USFDA


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_country: South Africa: KwaZulu-Natal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zoonosis Science Center


ncbi_country: Benin

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 34 - depth 258m

ncbi_organism_name: Marinobacter sp. REDSEA-S15_B16

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: USA: DC

ncbi_isolation_source: Urine catheter

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Thailand: Phitsanulok

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cardiff University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_country: France: Guebwiller; Alsace

ncbi_organism_name: Borreliella burgdorferi IPT35

ncbi_submitter: Animal Epidemiology Unit - INRA - Saint Genès Champanelle; CNR Borrelia - Pasteur Institute - Paris


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Chile: Region XI; Melinka

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: CMM


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerae bacterium RIFOXYA12_FULL_60_10


ncbi_country: China: Guide

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B3892

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus aureus M0075

ncbi_submitter: Broad Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shan Wei

ncbi_isolation_source: Shrimp pool

ncbi_organism_name: Planococcus sp. A6

ncbi_submitter: Shenzhen Institute of Advanced Technology,Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Planococcus;x__unclassified Planococcus (in: firmicutes);s__Planococcus sp. A6


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Chungbuk University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 407

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 5978

ncbi_submitter: University of Calgary


ncbi_organism_name: Paenibacillus alvei

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; 10% subassembly


ncbi_country: Spain

ncbi_isolation_source: Lung swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cornell University


ncbi_assembly_name: Rumen uncultured genome RUG11209

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Erwinia papayae

ncbi_strain_identifiers: JGD 233

ncbi_submitter: University of Guam


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Tatlockia sp.

ncbi_submitter: Monash University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Vibrio coralliilyticus

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: Faeces


ncbi_organism_name: Viridibacillus sp. FSL R5-0888

ncbi_submitter: Penn State


ncbi_country: South Africa: Driefontein mine in Carletonville district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Ktedonobacter racemifer

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Christensenella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Wageningen Plant Research


ncbi_country: Canada: Toronto

ncbi_isolation_source: Raw Milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Parasutterella excrementihominis


ncbi_country: Netherlands: Hoofddorp

ncbi_isolation_source: lung; right

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Regional Laboratory for Medical Microbiology and Public Health


ncbi_isolation_source: Human feces

ncbi_organism_name: Dorea longicatena

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong


ncbi_assembly_name: freshwater MAG --- KTt_bin-0975

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: USA: Durham; NC

ncbi_isolation_source: urine; clean catch

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Alabama in Huntsville


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Cryomorphaceae;x__unclassified Cryomorphaceae;s__Cryomorphaceae bacterium BACL22 MAG-120619-bin32


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vebleniibacteriota;s__Candidatus Veblenbacteria bacterium RIFOXYA2_FULL_43_9


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudoalteromonas sp. SR41-7

ncbi_submitter: University of Alaska Fairbanks


ncbi_assembly_name: freshwater MAG --- AM2_bin-0368

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: LHII

ncbi_submitter: University of Georgia


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Bristol


ncbi_isolation_source: Rifle background sediment; well D04 at 13ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium RBG_13_64_14


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-2994

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Mesorhizobium sp. C280B

ncbi_submitter: Washington State University


ncbi_country: Canada: Oldman River; Alberta

ncbi_isolation_source: water

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Italy

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Succiniclasticum sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Denmark

ncbi_isolation_source: Spoiled cod fillet

ncbi_organism_name: Photobacterium iliopiscarium

ncbi_strain_identifiers: NCIMB 13481

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environmental surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Proximal colon


ncbi_assembly_name: Campylobacter 8 barcode

ncbi_country: USA: Minnesota

ncbi_isolation_source: pig intestine

ncbi_organism_name: Campylobacter hyointestinalis subsp. hyointestinalis

ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Turkey

ncbi_isolation_source: fish

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: SUPERTROUT


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: river water

ncbi_organism_name: Lysinibacillus sp. MHQ-1

ncbi_submitter: dalian university of technology


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_country: China: Beijing

ncbi_submitter: Peking University Third Hospital


ncbi_assembly_name: PVA

ncbi_organism_name: Proteus vulgaris

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Roseitalea sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Succinatimonas sp. CAG:777

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: USA: New York City

ncbi_isolation_source: clinical isolate

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_organism_name: Actinokineospora guangxiensis

ncbi_refseq_category: reference genome

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Germany

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: CAU Kiel


gtdb_type_species_of_genus: t

ncbi_organism_name: Pygmaiobacter massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: EMG


ncbi_country: USA: WI

ncbi_isolation_source: feces

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium CG11_big_fil_rev_8_21_14_0_20_46_8


ncbi_assembly_name: De novo assembly of KCRI isolate RDK39_16

ncbi_isolation_source: wound swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: China: The East China Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: SciBear LLC


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Candidatus Metalachnospira sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Metalachnospira;x__unclassified Candidatus Metalachnospira;s__Candidatus Metalachnospira sp.


ncbi_isolation_source: soy sauce mash

ncbi_organism_name: Staphylococcus condimenti

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_submitter: NORHED grant


ncbi_country: Australia

ncbi_submitter: The ithree institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Microbacterium testaceum

ncbi_strain_identifiers: Os Enb-ALMB2

ncbi_submitter: ICAR - Indian Agricultural Research Institute


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Coprothermobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: screen

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universite de Caen


ncbi_assembly_name: Rumen uncultured genome RUG11742

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Chromobacterium piscinae

ncbi_submitter: Universidade Estadual de Londrina - UEL


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 90

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: sternal wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Enterobacter sichuanensis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: University of Galway


ncbi_country: Australia: Sydney; NSW

ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_isolation_source: mutagenesis

ncbi_organism_name: Mycolicibacterium neoaurum

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Sri Lanka: Batticaloa

ncbi_isolation_source: blood from Melioidosis patient

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: General Sir John Kotelawala Defence Uinversity


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_assembly_name: Burkholderia  cenocepacia BCC1558

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_country: USA: NY

ncbi_isolation_source: stool

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000953


ncbi_isolate: hypp

ncbi_organism_name: Hyphomicrobium sp. ghe19

ncbi_strain_identifiers: hypp

ncbi_submitter: Radboud University Nijmegen


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Psychrobacillus sp. MER TA 17

ncbi_strain_identifiers: MER TA 17

ncbi_submitter: Jet Propulsion Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Psychrobacillus;x__unclassified Psychrobacillus;s__Psychrobacillus sp. MER TA 17


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_country: South Korea: Jeju

ncbi_isolation_source: feces

ncbi_organism_name: Bacillus sp. B1-b2

ncbi_submitter: Jeju National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. B1-b2


ncbi_country: USA: University of Georgia in Athens; GA

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; hindgut

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium OttesenSCG-928-K03


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_country: Trinidad and Tobago: Trinidad

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas melonis

ncbi_strain_identifiers: DMCX

ncbi_submitter: The University of The West Indies, St. Augustine


ncbi_country: Canada: Alberta

ncbi_isolation_source: acidic soil at sulfur stockpile

ncbi_organism_name: Acidithiobacillus albertensis

ncbi_submitter: Fundacion Ciencia & Vida


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the seqafrica consortium


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Butyricimonas virosa

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: Yonsei University


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Peribacillus sp. NPDC060253

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Umea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Xanthobacter agilis

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Candidatus Scatovivens sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Scatovivens;x__environmental samples;s__uncultured Candidatus Scatovivens sp.


ncbi_organism_name: Gordonia oryzae

ncbi_submitter: The third institute of Oceanography


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Iodobacter sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudomonas parakoreensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Dissulfurimicrobium sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;g__Dissulfurimicrobium;x__unclassified Dissulfurimicrobium;s__Dissulfurimicrobium sp.


ncbi_organism_name: uncultured Thermotogaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Ardenticatenaceae bacterium


ncbi_organism_name: Corynebacterium bovis

ncbi_strain_identifiers: 1810230001 SH1 (inoculum strain)

ncbi_submitter: MIT


ncbi_submitter: University of Zurich


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: wood

ncbi_organism_name: Firmicutes bacterium UBA1535

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA1535


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Rhodanobacter sp.


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Jilin university


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: EMG


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: South Korea

ncbi_organism_name: Kaistia granuli DSM 23481

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_organism_name: Lentilitoribacter sp.


ncbi_assembly_name: freshwater MAG --- MJ130916A_bin-0562

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: New York City

ncbi_isolation_source: urine foley catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Larimore; ND

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: mini-bioreactor of chicken cecal community

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Netherlands

ncbi_isolation_source: disinfectant-free drinking water; site 2

ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: University of Glasgow


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: intestinal content

ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: ChinaCDC


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Japan

ncbi_isolation_source: Sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_country: Australia

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Melbourne


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_isolation_source: retroauricular crease

ncbi_organism_name: Staphylococcus epidermidis NIHLM039

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: cheese

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Lactobacillus taiwanensis


ncbi_organism_name: Chishuiella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: EMG


ncbi_country: USA: Massachusetts; Cambridge

ncbi_isolation_source: Cephalic recording chamber

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Yangzhou university


ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Brigham & Women's Hospital


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12118

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Spain: Pas Vasco

ncbi_submitter: University of Oviedo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: China: Chongqing

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_submitter: Hangzhou Medical College


ncbi_country: India: Tura; Meghalaya

ncbi_isolation_source: Pork

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of New South Wales


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Frigoribacterium sp. CFBP 13605

ncbi_submitter: INRAE


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 69 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: California

ncbi_organism_name: Campylobacter californiensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: nankai university


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Klebsiella sp. 104714

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: Spain: Asturias

ncbi_organism_name: Kocuria sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Patiriisocius marinus

ncbi_submitter: marine college, shandong university


ncbi_country: USA:Florida; Long Key

ncbi_organism_name: Solwaraspora sp. WMMA2059

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. 2(2015)

ncbi_submitter: Cornell University


ncbi_country: Germany

ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Enterococcus sp. FR018

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_country: United Kingdom: Sheffield

ncbi_organism_name: Neisseria lactamica

ncbi_submitter: University of Southampton


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F60346

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Atacame Desert

ncbi_isolation_source: rock scrappings

ncbi_organism_name: Nocardiopsis sp. FR26

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacteroides caecimuris


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Thomasclavelia cocleata


ncbi_country: China: 69 Yongding Road; Haidian District; Beijing

ncbi_isolation_source: urine

ncbi_submitter: China Medical University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Cellulomonas sp.

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_country: Sweden

ncbi_isolation_source: sekret

ncbi_organism_name: Mycobacterium tuberculosis BTB09-485


ncbi_submitter: The First Affiliated Hospital of Kunming Medical University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolate: pure

ncbi_isolation_source: Sungai Pinang; Penang; Malaysia

ncbi_organism_name: Cupriavidus sp. USMAA2-4

ncbi_submitter: Universiti Sains Malaysia


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Russia: Kolyma

ncbi_organism_name: Cohnella kolymensis

ncbi_submitter: Kingston University


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: drinking water

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: North South University


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_organism_name: Azorhizobium oxalatiphilum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Nitratifractor sp.

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: rhizosphere soil of wheat

ncbi_organism_name: Paenibacillus rhizophilus

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_country: USA: Chapel Hill; North Carolina

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Thailand


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. TH05

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (small; 1 micrometer filter)

ncbi_organism_name: Vibrio cyclitrophicus 1F175

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolate: Brucella melitensis biovar 3

ncbi_isolation_source: Swab

ncbi_organism_name: Brucella melitensis

ncbi_strain_identifiers: Brucella melitensis biovar 3

ncbi_submitter: ANSES


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient seawater

ncbi_organism_name: Ruegeria lacuscaerulensis

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University


ncbi_submitter: Medical Mycology Research Center


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient13 sputum

ncbi_submitter: Shenzhen People Hospital


ncbi_country: USA: CO

ncbi_isolation_source: bovine cow duodenum

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Opacimonas sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: China

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: China: QingHai

ncbi_isolation_source: Marmota himalayana

ncbi_organism_name: Wolbachia sp.

ncbi_submitter: China CDC


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GP01-A8

ncbi_submitter: Arkin Lab


ncbi_organism_name: Grimontia hollisae

ncbi_submitter: CDC


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Halobacteriovorax sp. FRX-3

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: United Kingdom: Leicester

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_country: South Korea

ncbi_isolation_source: paddy soil

ncbi_organism_name: Erythrobacter oryzae

ncbi_submitter: Mokwon University, Korea


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroides sp.


ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: BPO

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_submitter: SC


ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Kiel University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Crystal Geyser near Green River; Utah


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Porticoccus sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinacidiphila sp. bgisy160

ncbi_submitter: BGI Research


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 23231;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Candidatus Parabacteroides faecavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: KS

ncbi_isolation_source: dairy Cows

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59554F

ncbi_submitter: FDA


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: USA: New Jersey

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: INRA


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: endosphere

ncbi_organism_name: uncultured Cupriavidus sp.

ncbi_submitter: NIOO KNAW


ncbi_organism_name: Massilia sp. W12

ncbi_submitter: Anhui Academy of Agricultural Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Universite de Sherbrooke


ncbi_submitter: Beihang University


ncbi_country: Kenya: Kilifi

ncbi_submitter: USAMRD-A


ncbi_country: Australia: Western Australia; 80 Mile Beach

ncbi_submitter: Federation University Australia


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Ireland

ncbi_isolation_source: Cattle/Soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: Czech Republic

ncbi_isolation_source: lymph node

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_isolation_source: clinical patient

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_strain_identifiers: MAVP-V

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: marine sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Kiel University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Salmonella enterica CVM N45942 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Pork Chops

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: PatientQ

ncbi_submitter: California Department of Public Health


ncbi_country: Australia

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Pseudoxanthomonas sp. SE1

ncbi_submitter: University of Technology Sydney


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus H19398

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Arabian Gulf University


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_assembly_name: freshwater MAG --- AM2_bin-0831

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_isolation_source: Distal colon


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Cellulosilyticaceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Vibrio aestuarianus subsp. francensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Coxiella-like endosymbiont

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_strain_identifiers: ZRJ

ncbi_submitter: Enze Hospital


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chifeng Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Balearic Islands


ncbi_submitter: University of Oviedo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Corvallis


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Center for Disease Control and Public Health (NCDC) of Georgia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_organism_name: Salmonella sp. s24813

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Kitasatospora sp. NPDC058048

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Clostridia bacterium UC5.1-2D9

ncbi_submitter: Laboratory of Metagenomics, Graduate School of Frontier Sciences, The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__unclassified Clostridia;s__Clostridia bacterium UC5.1-2D9


ncbi_assembly_name: freshwater MAG --- MJ120924B_bin-289

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:449

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:449


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Thailand: Uttaradit

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kasetsart University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Pedobacter gandavensis

ncbi_submitter: Branch for Bioresources of the Fraunhofer IME


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus delbrueckii


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_country: USA: GA

ncbi_isolation_source: Young Chickens

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N60449F

ncbi_submitter: FDA


ncbi_country: China: Liaoning

ncbi_isolation_source: nasal swab

ncbi_submitter: China Agriculture University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Lengshuijiang; Hunan

ncbi_isolation_source: tailing mud

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Fujian Agriculture And Forestry University


ncbi_country: Tunisia

ncbi_isolation_source: Dried Ossban

ncbi_submitter: Rouen University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Norway: Trondelag

ncbi_isolation_source: salmon tissue (head kidney)

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Danny from private home

ncbi_organism_name: Pseudogracilibacillus sp.

ncbi_submitter: AnimalBiome


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Austria

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Peritoneal Fluid

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut

ncbi_organism_name: Gammaproteobacteria bacterium ESL0073

ncbi_submitter: University of Lausanne


ncbi_submitter: Cepheid


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: milk

ncbi_organism_name: Salmonella enterica

ncbi_strain_identifiers: QH

ncbi_submitter: Lanzhou Veterinary Research Institute


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Oklahoma

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Actinomycetospora sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Laboratory of Applied Microbiology, Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture


ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Rhizobiales bacterium TMED29

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Gaiella sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_country: USA: Boston; Massachusetts

ncbi_isolation_source: human oral cavity

ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: The Forsyth Institute


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Staphylococcus aureus F87602

ncbi_submitter: Broad Institute


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Abe hydrothermal plume 200m

ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Australia: Brisbane

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: South China Sea

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: IMG-taxon 2695421044 annotated assembly

ncbi_organism_name: Epilithonimonas zeae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Indonesia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: JGI assembly

ncbi_organism_name: Marinomonas fungiae

ncbi_submitter: DOE - Joint Genome Institute


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Haiti

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-64A1

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Qinghai

ncbi_isolation_source: sediments

ncbi_organism_name: Desulfamplus sp.

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Beijing University of Chemical Technology


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: India

ncbi_organism_name: Xanthomonas axonopodis pv. cajani

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces agglomeratus

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Neorhizobium petrolearium

ncbi_submitter: KAUST


ncbi_submitter: Toho University


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan

ncbi_organism_name: Escherichia coli


ncbi_country: Bangladesh

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Suzhou

ncbi_organism_name: Clostridium simiarum

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_isolation_source: Rice seed

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Taiwan

ncbi_isolation_source: tissue

ncbi_organism_name: Morganella morganii

ncbi_submitter: National Chung Cheng University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: not available

ncbi_submitter: SC


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0075

ncbi_submitter: Broad Institute


ncbi_country: Mali

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: Assembly of Mycobacterium caprae MB5 genome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB12-002


ncbi_organism_name: Sutterella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Lacombe

ncbi_organism_name: Butyricimonas virosa

ncbi_submitter: AAFC


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: Mesorhizobium captivum

ncbi_submitter: University of Pretoria


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Peru

ncbi_isolation_source: String method

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institue


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Australia

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Pseudobutyrivibrio ruminis

ncbi_submitter: Institute of Animal Physiology and Genetics


ncbi_country: China: Beijing

ncbi_isolation_source: fruit

ncbi_organism_name: Ornithinimicrobium cerasi

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: Actinomadura syzygii

ncbi_strain_identifiers: TBRC 3957

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: India: Mumbai

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA: Boston; MA

ncbi_isolation_source: abdominal wound

ncbi_organism_name: Staphylococcus aureus M0702

ncbi_submitter: Broad Institute


ncbi_country: Colombia: Bogota

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Chile

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: Denmark: Holte; Flower bed just outside train/bus staion

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces canus

ncbi_submitter: Technical University of Denmark


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. HF-5092

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia

ncbi_organism_name: Helicobacter pylori NQ4200

ncbi_submitter: Institute for Genome Sciences


ncbi_country: South Korea: Dokdo

ncbi_isolation_source: sediment 900 m below the seafloor

ncbi_organism_name: Sunxiuqinia dokdonensis

ncbi_submitter: KRIBB


ncbi_country: Greece

ncbi_isolation_source: yoghurt (ewe milk)

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 1050

ncbi_submitter: Brigham Young University


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_submitter: Helmholtz Center Munich


ncbi_country: USA

ncbi_isolation_source: hide

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Japan

ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Animal Hygiene, Kitasato University School of Veterinary Medicine


ncbi_organism_name: Psychroflexus tropicus DSM 15496

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Psychroflexus;s__Psychroflexus tropicus;x__Psychroflexus tropicus DSM 15496


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_organism_name: Candidatus Vicinibacter affinis

ncbi_submitter: Aalborg University


ncbi_isolation_source: human skin

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: NIH/NHGRI


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Institute of plant biology and biotechnology


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centre for Infectious Diseases and Microbiology - Public Health


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: EMG


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Academy of Military Medical Science


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ethiopia: Oromiya; East Wellega; Sire

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Saprospiraceae bacterium


ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidad Andres Bello


ncbi_country: China: Shenzhen

ncbi_isolation_source: pork

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Barnesiella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Candidatus Humimicrobium sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Candidatus Humimicrobiia;o__Candidatus Humimicrobiales;f__Candidatus Humimicrobiaceae;g__Candidatus Humimicrobium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Humimicrobiia;o__Candidatus Humimicrobiales;f__Candidatus Humimicrobiaceae;g__Candidatus Humimicrobium;x__unclassified Candidatus Humimicrobium;s__Candidatus Humimicrobium sp.


ncbi_country: Netherlands

ncbi_isolation_source: Dept of Medical Microbiology; University Medical Center Groningen

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Syntrophobacter sp.

ncbi_submitter: University of Iowa


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Buchananella hordeovulneris

ncbi_submitter: UC Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P91P

ncbi_submitter: South China Agricultural University


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 0d patty soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Peking university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Stenotrophomonas sp. AN71

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Wolbachia endosymbiont of Rhagoletis cingulata

ncbi_submitter: University of Notre Dame


ncbi_organism_name: Terriglobia bacterium


ncbi_organism_name: Silvanigrellaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolate: stem of Talipariti tiliaceum

ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_strain_identifiers: bgisy049;stem of Talipariti tiliaceum

ncbi_submitter: BGI Research


ncbi_organism_name: Pirellulales bacterium


ncbi_organism_name: Luteimonas mephitis

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: AAFC


ncbi_submitter: EMG


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 20cm depth; 4 days after first rain event (27mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium 13_1_20CM_2_65_11


ncbi_organism_name: Thermosulfidibacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_assembly_name: freshwater MAG --- Umea_bin-01319

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Paracidovorax citrulli

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Water

ncbi_organism_name: Escherichia coli

ncbi_submitter: MASSEY UNIVERSITY


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Enterobacter rongchengensis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: MOX P

ncbi_isolation_source: methanogen symbiont from mussel gill epithellium

ncbi_strain_identifiers: MOX P

ncbi_submitter: CRC 1182 Origin and Function of Metaorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__Bathymodiolus brooksi methanotrophic gill symbiont


ncbi_country: USA: Tennessee

ncbi_isolation_source: Rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: India

ncbi_isolation_source: Soil sample from a paddy field

ncbi_organism_name: Clostridium acetobutylicum

ncbi_submitter: National University of Singapore


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Pseudoramibacter sp.


ncbi_country: France

ncbi_isolation_source: Patient blood culture; Human wound; cranian

ncbi_organism_name: Streptococcus massiliensis DSM 18628


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_isolation_source: seawater

ncbi_organism_name: Photobacterium aquimaris

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 1

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Japan: Tokushima

ncbi_organism_name: Xanthomonas hortorum pv. carotae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: USDA-ARS


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: Belgium

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: GBBC 1073

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_country: Thailand: Nakhon Ratchasima

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: marine

ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG12640

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: Canada

ncbi_isolation_source: sputum from cystic fibrosis patient

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Manitoba


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D10_bin-0621

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS