ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_level: Contig

ncbi_country: India: Madambakkam; Kanchipuram District; Tamil Nadu

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Faecousia intestinavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: Biological sample (Abscess)

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: t

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: 3483PM;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_country: Switzerland: Lucerne

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Frateuria sp. YIM B11624

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: SEMIA 430

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_country: Austria

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: Malawi

ncbi_isolation_source: Blood


ncbi_country: Brazil: Distrito Federal

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: USP


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: oral cavity

ncbi_organism_name: Lachnoanaerobaculum saburreum DSM 3986

ncbi_refseq_category: reference genome

ncbi_submitter: Baylor College of Medicine

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_isolation_source: shrimp

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000215


ncbi_organism_name: Lutibacter sp.

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_organism_name: Bernardetiaceae bacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Zhejiang

ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Laboratory for Diagnosis and Treatment of Infectious Diseases


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with hylon

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: South Africa: Masimong mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Candidatus Paceibacter sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;f__Candidatus Paceibacteraceae;g__Candidatus Paceibacter;x__unclassified Candidatus Paceibacter;s__Candidatus Paceibacter sp.


ncbi_country: France: Saubens

ncbi_isolation_source: leaf

ncbi_organism_name: Paraburkholderia fungorum

ncbi_submitter: Temasek Life Sciences Laboratory


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Sediminibacillus sp. JSM 1682029

ncbi_submitter: Jishou University


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Alloscardovia omnicolens

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Ralstonia insidiosa

ncbi_submitter: University of Sao Paulo


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: adult honey bee queen gut

ncbi_organism_name: Commensalibacter melissae

ncbi_submitter: University of Lausanne


ncbi_country: Baltic Sea

ncbi_isolation_source: Redoxcline Baltic Sea

ncbi_organism_name: Candidatus Sulfurimonas baltica

ncbi_submitter: Leibniz Institute of Baltic Sea Research


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pig Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Leclercia sp.


ncbi_assembly_name: Rumen uncultured genome RUG13109

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_country: Spain

ncbi_submitter: Hospital 12 de Octubre


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: food processing facility

ncbi_organism_name: Lysobacteraceae bacterium PS02340

ncbi_submitter: Penn State University


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_assembly_name: Rumen uncultured genome RUG725

ncbi_organism_name: uncultured Olsenella sp.


ncbi_country: Nigeria

ncbi_isolation_source: Clinical wounds

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Igbinedion University Okada


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: Denmark: Moens Klint; 5; next to creek

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_01481

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China: Beijing

ncbi_isolation_source: liver; spleen; kidney lesions of 2 farm-raised Asian yellow pond turtles

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: biopsy

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: Japan: Nagano; Saku

ncbi_organism_name: Apilactobacillus micheneri

ncbi_submitter: Department of Biotechnology and Environmental Chemistry, Kitami Institute of Technology

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Shewanella algae

ncbi_strain_identifiers: JFL

ncbi_submitter: National Chung Cheng University


ncbi_country: China: Hengyang

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: Australia: Adelaide Hills; SA

ncbi_isolation_source: feces

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of California, Berkeley


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Phycisphaerales bacterium JB050

ncbi_submitter: JNTUH


ncbi_submitter: University of Pretoria


ncbi_organism_name: Fictibacillus sp. JL2B1089

ncbi_submitter: Shenzhou Space Biotechnology Group


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Wyoming


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Streptococcus parasuis

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Arizona; Sonoran Desert

ncbi_isolate: SON bin11

ncbi_strain_identifiers: SON bin11

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: uncultured Aquihabitans sp.


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Rickettsiales bacterium TMED127

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides intestinalis


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Brevibacillus agri

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Bangladesh: Kuakata

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Escherichia coli

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: University of Manchester


ncbi_country: China: Dongxing

ncbi_organism_name: Exiguobacterium algae

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium algae


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: University College Cork


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22532;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: France

ncbi_isolation_source: Minced meat

ncbi_submitter: Anses


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Fusobacterium animalis F0419

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli KTE225


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Kuwait

ncbi_isolation_source: camel milk

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kuwait institute for scientific research


ncbi_country: China: Jilin

ncbi_organism_name: Lactobacillus sp. W8172

ncbi_submitter: China Agricultural University


ncbi_organism_name: Cronobacter dublinensis subsp. dublinensis

ncbi_submitter: University of Wyoming


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Amycolatopsis thermoflava

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Italy: Sacco S.r.L.

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of Alberta


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: uncultured Flavonifractor sp.


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Korea: Jeju island

ncbi_isolation_source: forest soil

ncbi_organism_name: Flavobacterium silvaticum

ncbi_submitter: Chung ang university


ncbi_organism_name: Candidatus Nanogingivalis gingivitcus

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanogingivales;f__Candidatus Nanogingivalaceae;g__Candidatus Nanogingivalis;s__Candidatus Nanogingivalis gingivitcus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanogingivales;f__Candidatus Nanogingivalaceae;g__Candidatus Nanogingivalis;s__Candidatus Nanogingivalis gingivitcus


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-5-6

ncbi_submitter: Curtin University


ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_country: Italy

ncbi_isolation_source: Silage Feed

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: Coastal seawater

ncbi_organism_name: Methylophaga thalassica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_organism_name: Hoylesella shahii

ncbi_submitter: EMG


ncbi_country: Germany: Eilenburg

ncbi_isolation_source: active sludge of wastewater treatment plant

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Helmholtz Center for Environmental Research -UFZ


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacillus safensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus paralicheniformis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_country: USA:California San Luis Obispo

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


gtdb_type_species_of_genus: t

ncbi_country: Japan:Aichi; Anjo; Anjo Agricultural and Extension Centre

ncbi_isolation_source: rice rhizosphere

ncbi_organism_name: Methylomagnum ishizawai

ncbi_submitter: Soil Biology and Chemistry, Department of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Enterococcus faecalis


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: water

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Paenibacillaceae bacterium P-4

ncbi_submitter: Nanjing Agriculteral University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: SC


ncbi_submitter: UMCG Groningen


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_assembly_name: freshwater MAG --- KT3_bin-629

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;x__unclassified Rickettsiales;s__Rickettsiales endosymbiont of Ecdyonurus torrentis


ncbi_country: Germany

ncbi_isolation_source: Surface patient room

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Weissella cibaria

ncbi_submitter: University of Chicago


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Auburn; AL

ncbi_isolation_source: Musca domestica

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Auburn University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: caecum

ncbi_organism_name: Lachnoclostridium sp. An118

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: addis ababa university


ncbi_assembly_name: Rumen uncultured genome RUG14243

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_level: Chromosome

ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_country: Austria: Neusiedler See

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_strain_identifiers: Bir 251

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa MRSN 317

ncbi_strain_identifiers: MRSN 317

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas aeruginosa group;s__Pseudomonas aeruginosa;x__Pseudomonas aeruginosa MRSN 317


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Genskey


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: China: Beijing

ncbi_isolation_source: Domestic hot water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: SciBear LLC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama Birmingham


ncbi_country: China: Guangxi

ncbi_isolation_source: plant

ncbi_organism_name: Phycicoccus sp. CSK15P-2

ncbi_submitter: Life sciences Institute


ncbi_country: USA: University of Chicago

ncbi_isolation_source: tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Miami University


ncbi_country: China: Chongqing

ncbi_isolation_source: pneumonic lungs

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Southwest University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Endomicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Coriobacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Massachusetts General Hospital


ncbi_submitter: Zhejiang University


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas sp. P1.31

ncbi_submitter: JLU


ncbi_country: Russia: Nizhniy Novgorod

ncbi_isolation_source: soft tissue inflammation site

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_submitter: ANSES Ploufragan


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: City University of Hong Kong


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Institute of Animal Husbandry and Veterinary Medicine, BAAFS.


ncbi_country: Italy

ncbi_isolation_source: root nodules

ncbi_organism_name: Sinorhizobium meliloti C0431A

ncbi_submitter: University of Florence


ncbi_organism_name: Meridianimaribacter flavus

ncbi_submitter: Tang lab


ncbi_country: USA: New York

ncbi_isolation_source: raw fish

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: The Rockefeller University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas sp. NBRC 111138

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Pseudescherichia sp.


ncbi_organism_name: Candidatus Nitrotoga sp.

ncbi_submitter: Radboud University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp.


ncbi_country: Colombia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South American MRSA Consortium


ncbi_country: Brazil: Belem

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: sputum

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: Cucumber fermentation tank

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: mastitic milk

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: EC IMI 21

ncbi_submitter: UNICAMP


ncbi_submitter: Iowa State University


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Germany

ncbi_isolation_source: Urethral Swab

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SurvCARE


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Aquabacterium fontiphilum

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Anhui

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Anhui Medical University


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: United Kingdom: Norwich

ncbi_submitter: Imperial College London


ncbi_country: Sri Lanka

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Hebdomadis;x__Leptospira interrogans serovar Hebdomadis str. R499


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_country: USA

ncbi_strain_identifiers: SampleK

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Candidatus Pelagibacteraceae bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__unclassified Candidatus Pelagibacteraceae;s__Candidatus Pelagibacteraceae bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_country: China: Guizhou

ncbi_isolation_source: swine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: Ireland: Castlemaine Harbour

ncbi_isolation_source: haemolymph

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Cefas


ncbi_country: China:Fujian Provience

ncbi_isolation_source: sediment

ncbi_organism_name: Shewanella cyperi

ncbi_submitter: Agricultural Bio-resources Research Institute


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Methylobacteriaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_country: Denmark: Ega

ncbi_isolation_source: activated sludge from Ega_18-Q3-R5-49

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Acetivibrio mesophilus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: oral cavity

ncbi_submitter: Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;x__unclassified Actinomyces;s__Actinomyces sp. oral taxon 181;x__Actinomyces sp. oral taxon 181 str. F0379


ncbi_country: Japan:Shiga; Otsu; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: Russia: Kazan

ncbi_isolation_source: feces

ncbi_submitter: Kazan Federal University


ncbi_country: China: Ningbo

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: France: Tours

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: China: East Sea

ncbi_isolation_source: natural biofilms

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Bifidobacterium magnum DSM 20222

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Nevada

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Colorado

ncbi_isolation_source: fecal swab male ferret; 6.3 years old

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_country: India: Bihar; Buxar; Buxar

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine sediment

ncbi_organism_name: Salegentibacter sp. R32

ncbi_submitter: Harbin Institute of Technology at Weihai


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Desantisiibacteriota;s__Candidatus Desantisbacteria bacterium CG1_02_49_89


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Freising

ncbi_organism_name: Enterococcus sp. WCA-130-P53-23F

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: China: Shenzhen

ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: BGI


ncbi_organism_name: Trueperella pyogenes


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Anaeroplasmataceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Nantong; Jiangsu province

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Cambodia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: China: Beihai

ncbi_isolation_source: Stewed meat

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Candidatus Fonsibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;x__unclassified Candidatus Fonsibacter;s__Candidatus Fonsibacter sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China

ncbi_isolation_source: pork


ncbi_isolation_source: urine

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA

ncbi_isolation_source: joint; lung; CNS

ncbi_organism_name: Glaesserella parasuis MN-H

ncbi_strain_identifiers: MN-H

ncbi_submitter: Iowa State University


ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: Xinjiang Normal University


ncbi_organism_name: Streptomyces sp. NBC_01760

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Aquificales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: uncultured Brevundimonas sp.


ncbi_organism_name: Casimicrobium huifangae

ncbi_submitter: Xiamen University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal University of Agriculture Abeokuta


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Vulcanococcus sp.


ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Mucilaginibacter sp.


ncbi_strain_identifiers: atcc25922 mut 13

ncbi_submitter: Paris Saclay


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Schleiferiaceae bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. IR5399

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5399


ncbi_organism_name: Mucilaginibacter ximonensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterobacter cloacae complex sp. IR5448

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5448


ncbi_organism_name: Phocaeicola coprophilus

ncbi_submitter: EMG


ncbi_organism_name: Luteimonas abyssi

ncbi_submitter: University of Fribourg


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Beijing

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: bacterium

ncbi_submitter: Beijing University of Chemical Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_submitter: Uppsala University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Tabrizicola flagellatus

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroides uniformis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Candidatus Arthromitus sp. SFB-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__unclassified Candidatus Neoarthromitus;s__Candidatus Arthromitus sp. SFB-1


ncbi_country: USA: California; Calistoga

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Tang lab


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_strain_identifiers: Fad 108

ncbi_submitter: University of Alberta

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Holophagae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA02714

ncbi_submitter: Institute for Genome Sciences


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: secretion

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_country: USA: FL

ncbi_isolation_source: intestine

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: environment

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_country: Egypt: Alexandria

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG13527

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: joint / synovial fluid

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Haemophilus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Tractidigestivibacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Anaerorhabdus sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Microcella pacifica

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: Los Angeles

ncbi_isolation_source: blood

ncbi_submitter: UCLA Clinical Microbiology Laboratory


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Qingdao Agricultural Universtiy


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil: Sao Pablo

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter sp. 120016

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Streptomyces sp. NPDC006743

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Municipal Center for Disease Control & Prevention


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: China

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic lake sediment

ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: Universidad de la Republica


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: TX

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_country: USA: FL

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Hungary: Soroksar tributary of the Danube river

ncbi_isolation_source: Rhizosphere of narrowleaf cattail (Typha angustifolia) from a floating mat

ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: China: Sichan;Chengdu

ncbi_organism_name: [Pasteurella] aerogenes

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;x__Pasteurellaceae incertae sedis;x__[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex;s__[Pasteurella] aerogenes


ncbi_isolation_source: skin

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Neobacillus drentensis

ncbi_submitter: Auburn University


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: USA: North carolina

ncbi_isolation_source: isobutane enrichment from soil

ncbi_organism_name: Rhodococcus aetherivorans

ncbi_submitter: North Carolina State University


ncbi_organism_name: Candidatus Brevefilum sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Brevifilum;x__unclassified Candidatus Brevefilum;s__Candidatus Brevefilum sp.


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Texas Tech University


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Sea-surface microlayer

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_country: Canada: Alberta

ncbi_isolation_source: stream water

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: uncultured Bilophila sp.


ncbi_assembly_name: freshwater MAG --- AM-sed-core2-D2_bin-148

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: India: Gorchuk; Guwahati; Assam

ncbi_isolation_source: feces

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rubricoccaceae bacterium

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Mexico

ncbi_submitter: Beijing Institute of Genomics, CAS


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: Shatin WWTPs_93 WWTPs influent

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: lake water

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Mycobacteroides chelonae CCUG 47445

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: Scandinavium lactucae

ncbi_submitter: Max Rubner-Institut


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Alishewanella sp.

ncbi_submitter: Linnaeus University


ncbi_organism_name: Turicimonas muris


ncbi_country: USA: California; Middletown

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Acinetobacter baumannii 44895_10

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Pseudoxanthomonas sp. Root65

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Helicobacter pylori HPAG1

ncbi_submitter: Washington University (WashU)


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI


ncbi_country: China: Meishan; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Colwellia sp.

ncbi_submitter: EMG


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Mucispirillum sp.


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: China

ncbi_isolation_source: copper-gold mine

ncbi_organism_name: Cupriavidus necator

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: mozzerella cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_country: Germany: Sylt

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Blautia sp.

ncbi_submitter: The University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 119

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: finnish OM study group

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Griffith University


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: France: Brest

ncbi_isolation_source: Oyster


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saccharophagus sp.

ncbi_submitter: marine college, shandong university


ncbi_submitter: Guangzhou Institute of Respiratory Health, First Affiliated Hospital of Guangzhou Medical University


ncbi_country: USA: MO

ncbi_isolation_source: intestine

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bredeney


ncbi_isolation_source: freshwater

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: South China Normal University


ncbi_isolation_source: urine

ncbi_organism_name: Nosocomiicoccus sp. HMSC067E10

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: South Africa

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Ureaplasma parvum

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Gordonia amarae

ncbi_submitter: La Trobe University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rectinema sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Pseudomonas sp. BNK-7

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Desulforhopalus sp.


ncbi_organism_name: Terriglobales bacterium


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Lutimonas sp.


ncbi_organism_name: Pseudomonas sp. NPDC096925


ncbi_organism_name: Mesorhizobium sp. ASY16-5R

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_submitter: UTsouthwestern Medical Center


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Vibrio cidicii

ncbi_submitter: University of Copenhagen, Faculty of Health and Medical Sciences


ncbi_organism_name: Veillonella atypica

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterovibrio norvegicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Streptomyces sp. NPDC056305


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG


ncbi_organism_name: Parasynechococcus sp.

ncbi_submitter: HKUST


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_organism_name: uncultured Leptospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Micromonospora sp. DT31

ncbi_submitter: University of Liege


ncbi_submitter: University of British Columbia


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: GNS Science


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Montana State University


ncbi_assembly_name: Sanguibacteroides massiliensis

ncbi_organism_name: Gabonibacter massiliensis

ncbi_submitter: URMITE


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Myxococcales bacterium


ncbi_organism_name: Clostridium sp. AF15-49

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Clostridium baratii

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Poland: Zloty Stok

ncbi_isolation_source: rock biofilm and bottom sediments

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: University of Warsaw


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Melbourne

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: Czech Republic

ncbi_organism_name: Acidisphaera sp. S103

ncbi_submitter: Institute of Microbiology of the AS CR


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Muenster

ncbi_isolation_source: anorectal swab

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Xiamen University


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-250

ncbi_submitter: Broad Institute


ncbi_organism_name: Dubosiella newyorkensis


ncbi_country: Guam: Anae Island reef

ncbi_isolation_source: whole sponge tissue

ncbi_organism_name: Hormoscilla sp. SP12CHS1

ncbi_submitter: University of California, San Diego


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: uncultured Thermotogaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Taiwan: shrimp culture pond

ncbi_isolation_source: freshwater

ncbi_organism_name: Flavobacterium macrobrachii

ncbi_submitter: korea university


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: A*STAR IDLabs


ncbi_organism_name: Micropepsaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Lund University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Enterococcus sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus atrophaeus


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Israel

ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: Hebrew University of Jerusalem


ncbi_country: China: Shenzhen

ncbi_isolation_source: sample from patient in hospital emergency room

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: First Affiliated Hospital, Southern University of Science and Technology


ncbi_isolation_source: human skin

ncbi_organism_name: Gordonia paraffinivorans

ncbi_submitter: NIH/NHGRI


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Waddliaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Kribbella sp.


ncbi_organism_name: Streptomyces sp. NPDC059129

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Sao Paulo


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 655378

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: EMG


ncbi_country: Norway: Telemark

ncbi_isolation_source: cyst fluid

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Vestfold Hospital Trust


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptococcus anginosus


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_country: Finland

ncbi_isolation_source: Breast milk

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_strain_identifiers: ATCC PTA 4659

ncbi_submitter: BioGaia AB


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: India: NGTC

ncbi_isolation_source: Raw chicken

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Histophilus somni

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Pseudomonas sp. TYF_14

ncbi_submitter: WenZhou Medical University


ncbi_assembly_name: Rumen uncultured genome RUG12474

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: National Centre for Laboratory Research and Risk Assessment


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_country: United Kingdom

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Cardiff University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Alphaproteobacteria bacterium UBA1632

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0097

ncbi_submitter: Broad Institute


ncbi_submitter: INSTITUTE OF FOOD RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Aquaticitalea lipolytica


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Newcastle

ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: USA: Lechuguilla Cave; New Mexico

ncbi_isolation_source: cave surface layer

ncbi_organism_name: Sphingopyxis sp. LC81

ncbi_submitter: Monash University Malaysia


ncbi_isolation_source: intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Church and Dwight


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Choladousia;s__Candidatus Choladousia intestinipullorum


ncbi_country: China: Shenzhen

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Robiginitalea sp.

ncbi_submitter: Georgia Tech


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Korea: Yeongwol-gun; Gangwon-do

ncbi_isolation_source: soil

ncbi_organism_name: Lysobacter arenosi

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: human gut

ncbi_organism_name: Comamonas kerstersii

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Streptococcus salivarius


ncbi_country: USA: Idaho

ncbi_isolation_source: potato tuber

ncbi_organism_name: Streptomyces caniscabiei

ncbi_submitter: USDA ARS


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Agarivorans sp. YJW194

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Saskatoon

ncbi_isolation_source: bottled beer

ncbi_organism_name: Loigolactobacillus backii

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kasetsart University


ncbi_country: India: Chandigarh

ncbi_isolation_source: fecal contaminated soil

ncbi_organism_name: Limosilactobacillus walteri

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Australia: Victoria

ncbi_isolation_source: Sacral swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Doherty Applied Microbial Genomics


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Belgium: Netherlands

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Rugosibacter sp.

ncbi_submitter: University of Oklahoma


ncbi_country: China: Shanghai

ncbi_isolation_source: the brine of stinky tofu

ncbi_organism_name: Lentilactobacillus curieae

ncbi_submitter: East China University of Science and Technology


ncbi_country: USA: Nebraska

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Colorado State U


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 1513

ncbi_submitter: The University of Queensland


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: Tissue isolate

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: ocean

ncbi_organism_name: Prochlorococcus marinus CUG1416

ncbi_submitter: China University of Geosciences


ncbi_country: Senegal: Sagata

ncbi_isolation_source: Groundnut Field

ncbi_organism_name: Bradyrhizobium sp. ISRA432

ncbi_submitter: IRD


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Neisseriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Shan Wei

ncbi_isolation_source: shrimp pool

ncbi_organism_name: Tenacibaculum sp. L6

ncbi_submitter: Shenzhen Institute of Advanced Technology,Chinese Academy of Sciences


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_country: Slovakia: Ruzomberok

ncbi_isolation_source: material from head surgery

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_country: Germany: Stuttgart

ncbi_isolation_source: mixed minced meat

ncbi_submitter: Robert Koch Institute


ncbi_country: China: Shandong; Dongying

ncbi_organism_name: Agrobacterium sp. YIC 4121

ncbi_submitter: Northeast institute of Geography and Agroecology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: Universite Laval


ncbi_submitter: Taizhou University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: adult male cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Campylobacter devanensis


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_isolation_source: Sphenoid swab

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Northumbria University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Indonesia: Enggano Island

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. SHP22-7

ncbi_submitter: University of Tuebingen


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: Poland: Warszawa

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: USA: Georgia

ncbi_isolation_source: week A4 calf 71 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia