ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: South Korea: Cheongju-si

ncbi_genome_representation: full

ncbi_isolation_source: kimchi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Sempio Foods Company


ncbi_assembly_level: Scaffold

ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_assembly_level: Contig

ncbi_country: Australia: Cable Ski Park; Ferry Road; Carbrook

ncbi_isolation_source: freshwater

ncbi_organism_name: Nodularia spumigena CS-1038

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


gtdb_representative: t

ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CSIR-National Institute of Oceanography(CSIR-NIO), Regional Centre, Mumbai, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China

ncbi_isolation_source: pig farm

ncbi_submitter: Yangzhou University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: other

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_country: Italy

ncbi_isolation_source: exsudates

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Canada: Alberta

ncbi_isolation_source: Culture Media

ncbi_submitter: University of Alberta


ncbi_organism_name: Pectobacterium atrosepticum

ncbi_submitter: Cornell University


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter apodemus


ncbi_organism_name: Methylotenera oryzisoli


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: USA: TX

ncbi_isolation_source: patient

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Washington; DC

ncbi_isolation_source: tracheal mucosa

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: HI

ncbi_isolation_source: albacore tuna anal vent

ncbi_organism_name: Photobacterium angustum

ncbi_submitter: FDA/CFSAN


ncbi_country: Japan

ncbi_isolation_source: paddy soil

ncbi_organism_name: Geomonas diazotrophica

ncbi_submitter: The University of Tokyo

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Yersinia sp. 2545 StPb PI

ncbi_strain_identifiers: 2545 StPb PI

ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__unclassified Yersinia (in: enterobacteria);s__Yersinia sp. 2545 StPb PI


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Curtobacterium sp. VKM Ac-1376

ncbi_strain_identifiers: VKM Ac-1376

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_country: South Korea

ncbi_submitter: bioMerieux


ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Zhaoqin Center for Disease Control and Prevention


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: wheat sourdough

ncbi_organism_name: Pediococcus pentosaceus

ncbi_strain_identifiers: LBAE C15

ncbi_submitter: Brigham Young University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: USA: Louisiana; Galliano

ncbi_isolation_source: blood and BAL

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Kenya: Kisumu

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Canada

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Japan:Iwate; Ofunato Bay

ncbi_isolation_source: Seaweed

ncbi_organism_name: Cobetia sp. 5-25-4-2

ncbi_submitter: Iwate University


ncbi_country: China: Sichuan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: City university of Hong Kong


ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Sanmen People's Hospital


ncbi_country: Indian Ocean

ncbi_isolation_source: deepsea water sample

ncbi_organism_name: Hyphobacterium indicum

ncbi_refseq_category: reference genome

ncbi_submitter: Insititue of Microbiology Chinese Acadamy of Science


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: alternating anaerobic and microareobic bioreactor

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: Brazil

ncbi_isolation_source: Milker s hand

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Sao Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal


ncbi_organism_name: Exiguobacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp.


ncbi_country: United Kingdom: London

ncbi_submitter: Imperial College London


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Quebec

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120219


ncbi_organism_name: Cereibacter johrii

ncbi_submitter: University of the Philippines Los Banos


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Tokyo University of Pharmacy & Life Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Devosia sp.

ncbi_submitter: Monash University


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lutispora sp.

ncbi_submitter: University of Iowa


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Spirochaetaceae bacterium UBA5328

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Lavras

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium brasilense

ncbi_submitter: Universidade Federal do Parana (UFPR)


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: Bangladesh: Narsingdi

ncbi_isolation_source: Droppings

ncbi_submitter: University of Dhaka


ncbi_organism_name: Salmonella enterica subsp. enterica


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_submitter: Swiss Tropical and Public Health Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: Norway

ncbi_isolation_source: Head ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: USA

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Minnesota


ncbi_organism_name: Streptomyces sviceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ralstonia wenshanensis

ncbi_submitter: LM-UGent


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: A fermented food Zha-chili

ncbi_organism_name: Clostridium sp. HBUAS56017

ncbi_submitter: Hubei University of Arts and Science


ncbi_isolation_source: Seafood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: AOP31_B2_surf _bin _23

ncbi_organism_name: Fusobacterium sp.

ncbi_strain_identifiers: AOP31_B2_surf _bin _23

ncbi_submitter: Genoscope


ncbi_country: China: Shenzhen Children s Hospital

ncbi_isolation_source: stool

ncbi_submitter: ShenZhen Children's Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Solimonas sp.


ncbi_assembly_name: Rumen uncultured genome RUG11853

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Angelakisella sp.


ncbi_organism_name: uncultured Schaedlerella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Rothia dentocariosa

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium CG_4_10_14_0_2_um_filter_50_16


ncbi_assembly_name: IMG-taxon 2585428073 annotated assembly

ncbi_organism_name: Thermosipho atlanticus DSM 15807

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_country: Poland: Poznan

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: South Korea

ncbi_organism_name: Oceanisphaera avium

ncbi_submitter: Kyung Hee University


ncbi_country: Thailand

ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: shrimp culture ponds

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Turkey

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Aarhus University


ncbi_country: Australia: Queensland; Lake Wivenhoe

ncbi_isolation_source: freshwater

ncbi_organism_name: Cylindrospermopsis raciborskii C03

ncbi_submitter: Griffith University


ncbi_country: China: Sichuan

ncbi_isolation_source: Poultry

ncbi_organism_name: Escherichia albertii

ncbi_strain_identifiers: Sample 166

ncbi_submitter: Zigong Center for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Gaiellaceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: SAN Group Biotech Germany


ncbi_organism_name: Roseburia intestinalis


ncbi_organism_name: Candidatus Tripitaka californicus

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Hypogeohydatales;f__Candidatus Hypogeohydataceae;g__Candidatus Tripitaka;s__Candidatus Tripitaka californicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Hypogeohydatales;f__Candidatus Hypogeohydataceae;g__Candidatus Tripitaka;s__Candidatus Tripitaka californicus


ncbi_organism_name: Acinetobacter sp. 22524

ncbi_submitter: Yantai University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Limosilactobacillus reuteri subsp. suis

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Ministry for Primary Industries


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. NW959

ncbi_submitter: Sichuan University


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Desulfocapsaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPLOWO2_02_FULL_44_18


ncbi_country: Pacific Ocean: off Costa Rica Margin

ncbi_isolation_source: marine sediment from IODP Expedition 334

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Delaware

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Firmicutes bacterium AF25-13AC

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF25-13AC


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_isolation_source: Caspian sea 150 m depth


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Rhizobiales bacterium 3FA27D7

ncbi_submitter: University of Trento


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Tang lab


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Distal colon

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: UNESP-FCAV


ncbi_country: USA: Gainesville

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Geneva University Hospitals


ncbi_country: Japan: Chubu

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Exiguobacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp.


ncbi_country: Colombia: Risaralda

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Anaerobiospirillum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3017

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Poland: Torun Basin

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces pinistramenti

ncbi_submitter: Nicolaus Copernicus University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Switzerland: Lake Zurich; 5 m depth

ncbi_organism_name: Candidatus Planktophila versatilis

ncbi_submitter: University of Zurich

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila versatilis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila versatilis


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: legume-root nodule

ncbi_organism_name: Rhizobium sp. R72

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_country: Greece

ncbi_isolation_source: plant root

ncbi_organism_name: Plastoroseomonas hellenica

ncbi_submitter: UNIVERSITY OF GENT


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Anaerofustis stercorihominis


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Radboudumc


gtdb_type_species_of_genus: t

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_strain_identifiers: ATCC 4720

ncbi_submitter: Universidad de Salamanca


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H59329

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: California; Davis

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_isolation_source: mutton

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Salmonella enterica


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Osaka Instutute of Public Health


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter japonicus


ncbi_isolate: metabat2_XCR1_HOM_7864_bwa.26 MAG

ncbi_strain_identifiers: metabat2_XCR1_HOM_7864_bwa.26 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Germany: Lower Saxony

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Bern


ncbi_country: Trinidad and Tobago: Trinidad

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The University of The West Indies, St. Augustine


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Castellaniella ginsengisoli

ncbi_submitter: The University of Georgia


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Duncaniella muris


ncbi_country: United Kingdom: Wirral; Neston

ncbi_strain_identifiers: cCpun

ncbi_submitter: University of Liverpool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Amoebophilaceae;g__Candidatus Cardinium;x__unclassified Candidatus Cardinium;s__Cardinium endosymbiont of Culicoides punctatus


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pedobacter albus

ncbi_submitter: Kyonggi university


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1472 from squamous cell carcinomas patient MST012

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Queensland


ncbi_country: South Korea: Namhae

ncbi_organism_name: Vreelandella titanicae

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: stool

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. DC_10-450


ncbi_country: USA: Morgantown

ncbi_organism_name: Serratia marcescens

ncbi_submitter: West Virginia University


ncbi_organism_name: Bartonella sp. OC29QHQL

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from transplant house

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: USA

ncbi_isolation_source: Soil

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Mississippi state university


ncbi_organism_name: uncultured Johnsonella sp.

ncbi_submitter: EMG


ncbi_isolation_source: intestinal content

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: ChinaCDC


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Desulfosporosinus sp.

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_isolation_source: not known

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: SC


ncbi_country: France: Marseille

ncbi_isolation_source: Bronchial aspiration

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: China

ncbi_isolation_source: sickbed swab

ncbi_submitter: Zhaoqin Center for Disease Control and Prevention


ncbi_country: Denmark: Odense

ncbi_organism_name: Streptococcus gallolyticus subsp. gallolyticus

ncbi_submitter: Region Zealand


ncbi_organism_name: Curtobacterium sp. PhB128

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Gansu

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_isolation_source: flower shop

ncbi_organism_name: Citrobacter sp. H12-3-2

ncbi_submitter: South China Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Desulfuromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Japan: Sesoko Isalnd; Okinawa

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_organism_name: Jannaschia sp. 2305UL9-9

ncbi_submitter: Hannam University


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_country: Thailand

ncbi_isolation_source: Citrus sp.

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Streptococcus pyogenes ABC020057449

ncbi_submitter: Broad Institute


ncbi_isolation_source: gut

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: University of Alabama at Birmingham


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: Denmark

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli O7:H4

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_submitter: AAFC


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Streptococcus gallolyticus subsp. gallolyticus

ncbi_submitter: Region Zealand


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Streptococcus parasuis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Ireland

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0234


ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: Guangdong Women and Children Hospital


ncbi_organism_name: uncultured Roseburia sp.


ncbi_submitter: HPA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: China: Zhejiang

ncbi_isolation_source: soil sample from cotton field

ncbi_organism_name: Ochrobactrum sp. DDT2

ncbi_submitter: Zhejiang Univesity


ncbi_organism_name: Roseobacter sp. HKCC-CH-9324

ncbi_submitter: Shenzhen Research Institute, The Chinese University of Hong Kong


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Lund University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Brazil

ncbi_organism_name: Mycolicibacterium sp. CBMA 234

ncbi_strain_identifiers: CBMA 234

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_submitter: Instituto de Quimica


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA

ncbi_organism_name: Burkholderia orbicola

ncbi_submitter: University of Michigan


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3643

ncbi_submitter: University of Queensland


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Campylobacter sp. LMG 7929

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Shandong Agricultural University


ncbi_organism_name: Streptomyces paradoxus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: BTP

ncbi_organism_name: Burkholderia thailandensis Phuket 4W-1

ncbi_strain_identifiers: Phuket 4W-1

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Egypt

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: stool

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolate: AOP32_A1_surf _bin _9

ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_strain_identifiers: AOP32_A1_surf _bin _9

ncbi_submitter: Genoscope


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paraburkholderia sp. NPDC080076


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: uncultured Cyclobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Aerococcaceae bacterium

ncbi_submitter: University of Minnesota


ncbi_isolate: AOP43_B2_surf _bin _4

ncbi_organism_name: Brevibacterium linens

ncbi_strain_identifiers: AOP43_B2_surf _bin _4


ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC087866


ncbi_organism_name: Gillisia xinjiangensis

ncbi_submitter: Ningbo University


ncbi_organism_name: Sutterella parvirubra


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4571_4 depth 0-3 cm

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bulleidia sp.


ncbi_organism_name: Kouleothrix sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Beside Boulder

ncbi_submitter: University of Duisburg-Essen


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Nocardia sp. NBC_01009

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Stercoripulliclostridium;s__Candidatus Stercoripulliclostridium merdigallinarum


ncbi_country: Senegal

ncbi_isolation_source: Palm wine

ncbi_organism_name: Leuconostoc palmae

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Anaerostipes hadrus


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV089

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_assembly_name: freshwater MAG --- Loclat_bin-16982

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH PA23-28

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Microscillaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Alloprevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Erken-D9_bin-0237

ncbi_organism_name: uncultured Holophagaceae bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Brazil: Recife

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: Australia: Tasmania; Dairy Farm

ncbi_isolation_source: dairy Farm Milk Chiller

ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Tasmania


ncbi_organism_name: Vibrio rumoiensis

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: Bangladesh

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: LPKP

ncbi_submitter: Lab of Forest Resource protection and Utilization


ncbi_country: Austria

ncbi_isolation_source: nasal

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: AGES


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Butyricimonas paravirosa

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: caecum

ncbi_organism_name: Olsenella sp. An270

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: BGI


ncbi_isolation_source: cabbage leaves

ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: DX

ncbi_submitter: Jiangsu Academy of Agricultural Sciences


ncbi_organism_name: uncultured Stomatobaculum sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Sutterellaceae bacterium


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: vagiva

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_organism_name: Phocaeicola dorei


ncbi_country: USA

ncbi_isolation_source: Wyoming Soil

ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: Ohio State university


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Changsha

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xiangya hospital, Central South University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_country: Chile: Tarapaca; Salar de Huasco; H5 site

ncbi_isolation_source: Sediment sample

ncbi_organism_name: Exiguobacterium sp. SH5S32

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. SH5S32


ncbi_country: Russia: Rostov-on-Don

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Research Institute for Plague Control


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: CAU


ncbi_country: USA: PA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M2


ncbi_country: Australia: Adelaide

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of South Australia


ncbi_country: Ecuador

ncbi_isolation_source: urine

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: UAEM


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Washington

ncbi_isolation_source: Healthy pacfiic oyster larvae

ncbi_organism_name: Vibrio sp. 99-8-1

ncbi_submitter: Oregon State University


ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_strain_identifiers: SE-RD

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Actinomyces gerencseriae DSM 6844

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Stony Brook University


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10577

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Candidatus Avelusimicrobium ruminicola

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Illinois

ncbi_isolation_source: Spinal fluid

ncbi_organism_name: Neisseria meningitidis


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Flaviaestuariibacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Paracoccus marcusii

ncbi_strain_identifiers: KGP

ncbi_submitter: Vellore Institute of Technology


ncbi_organism_name: Bifidobacterium breve


ncbi_country: Germany: Greifswald

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human gut


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: RIKEN-BRC


ncbi_country: Poland

ncbi_organism_name: Escherichia coli

ncbi_submitter: Biobank Lab, Department of Molecular Biophysics, Faculty of Biology and Environmental Protection, Univeristy of Lodz, Poland


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_country: USA: Georgia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Texas A&M University


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Aquimonas sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Dialister invisus

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Brevundimonas sp. MEB006b

ncbi_submitter: University of Chicago


ncbi_organism_name: Aerococcus urinaeequi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: IMG-taxon 2667527404 annotated assembly

ncbi_organism_name: Pseudonocardia oroxyli

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Redwood City; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Enterobacter sp. RHBSTW-00974

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_country: Poland: Vistula river in Warsaw center

ncbi_organism_name: Janthinobacterium rivuli

ncbi_submitter: University of Warsaw


ncbi_isolation_source: cucumber rhizosphere

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG481

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Zhejiang university


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Antarctobacter heliothermus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallis sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_strain_identifiers: DSM 10

ncbi_submitter: University of Hohenheim

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: Kenya: Kisumu

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- MJ120924A_bin-543

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Australia: Melbourne

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_isolation_source: secretions

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: HI

ncbi_isolation_source: seawater

ncbi_organism_name: Photobacterium angustum

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: other

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. SID7816

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Proteus sp. G2657

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2657


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: EMG


ncbi_country: China: Shandong

ncbi_isolation_source: human oral cavity

ncbi_organism_name: Streptococcus oralis

ncbi_strain_identifiers: SOT

ncbi_submitter: Shandong University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Portugal: Grandola; Herdade da Barroca da Serra

ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: Universidade do Minho


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Stenotrophomonas sp. UBA7606


ncbi_organism_name: Streptococcus infantis


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: Canada: Brooks

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0535

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: USA: California

ncbi_isolation_source: Creek sediment

ncbi_organism_name: Aromatoleum toluclasticum

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_assembly_name: freshwater MAG --- Loclat_bin-05265

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: South Korea

ncbi_isolation_source: Jeotgal

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Kyunghee University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Ares Genetics GmbH


ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: HKUST


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Nocardia brasiliensis NBRC 14402

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: China: Gaungdong

ncbi_isolation_source: feces

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: INIA P734

ncbi_isolate: INIA P734

ncbi_isolation_source: human breast milk

ncbi_organism_name: Bifidobacterium breve

ncbi_strain_identifiers: INIA P734

ncbi_submitter: UVEG


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Hangzhou First People's hospital


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Kvitko Lab


ncbi_organism_name: Albidovulum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Chlorobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Paenibacillus sp. FSL R5-0636

ncbi_submitter: Penn State


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Puyang Oil Field General Hospital


ncbi_organism_name: Salmonella sp. NW64

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces angustmyceticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Yoonia sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Ascidiaceihabitans sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Dong-A University


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Psychroserpens sp.


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Crocinitomicaceae bacterium


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Coxiellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xiamen University


ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: USP


ncbi_country: Norway

ncbi_isolation_source: fish gut

ncbi_organism_name: Shewanella baltica

ncbi_submitter: Institute of Marine Research


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Eubacterium sp. CAG:86

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:86


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Comamonas sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Biotechnology, BTU Cottbus-Senftenberg


ncbi_organism_name: Bacillus anthracis str. A2012

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. A2012


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA

ncbi_organism_name: Listeria innocua

ncbi_submitter: Michigan Department of Health and Human Services


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Brazil: Recife

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_country: South Korea: Janggu-do

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Altererythrobacter lutimaris

ncbi_submitter: Korea University


ncbi_country: USA: West Virginia

ncbi_isolation_source: Poultry house water

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: IMG-taxon 2667528178 annotated assembly

ncbi_organism_name: Nitratireductor aquibiodomus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Lysobacter sp. ISL-54

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 48:i:z


ncbi_organism_name: Bacillus cereus


ncbi_country: Atlantic Ocean

ncbi_isolation_source: intestine

ncbi_organism_name: Pseudoalteromonas sp. APC 3358

ncbi_submitter: University College Cork


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Avimonas sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avimonas;x__unclassified Candidatus Avimonas;s__Candidatus Avimonas sp.


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Virginia

ncbi_isolation_source: vaginal

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Consortium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Rossellomorea sp. GCM10028870

ncbi_strain_identifiers: LNNU Bl-46

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Caulobacter sp. BE254

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Veillonella atypica

ncbi_submitter: University of Trento


ncbi_organism_name: Thermoleophilales bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Paraprevotella clara


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG152

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: New Zealand: North Canterbury; near Tuahiwi

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Canterbury


ncbi_country: South Africa: Manguzi Hospital - MDR TB Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0045

ncbi_submitter: Broad Institute


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-148

ncbi_submitter: JCVI


ncbi_organism_name: Parabacteroides sp. PM6-13


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: James Cook University


ncbi_isolation_source: Cheese

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Bacteriology, Basic Medicine, Kyushu University Faculty of Medical Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia

ncbi_isolation_source: sediments hypersaline lake

ncbi_organism_name: Hydrogenovibrio halophilus DSM 15072

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ares Genetics GmbH


ncbi_country: USA: PA

ncbi_isolation_source: spleen (Sus scrofa)

ncbi_submitter: FDA/CFSAN


ncbi_country: Portugal: Algarve

ncbi_isolation_source: Sea cave

ncbi_organism_name: Pseudoalteromonas sp. 2CM36K

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Thailand: Roi et

ncbi_isolation_source: bile

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kasetsart University


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: wastewater treatment plant efflux

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Microcoleus sp. Pol12B5

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 02T2A

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_submitter: University of Birmingham


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Methylomagnum ishizawai

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Israel: Jerusalem

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hebrew University


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Candidatus Bipolaricaulis sibiricus

ncbi_submitter: Colorado State University

ncbi_taxonomy: d__Bacteria;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;s__Candidatus Bipolaricaulis sibiricus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;s__Candidatus Bipolaricaulis sibiricus


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Pacific Ocean

ncbi_isolation_source: basaltic crustal fluids

ncbi_submitter: University of Hawaii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium JdFR-48


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Switzerland

ncbi_organism_name: Paenibacillus turicensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces pig

ncbi_submitter: FDA/CFSAN


ncbi_country: Hungary: Orgovany

ncbi_isolate: Kecskemet-Hungary; ATCC BAA-846

ncbi_organism_name: Allorhizobium ampelinum S4

ncbi_strain_identifiers: Kecskemet-Hungary;ATCC BAA-846;S4

ncbi_submitter: Agrobacterium consortium


ncbi_country: USA: New York

ncbi_isolation_source: pure bacterial culture

ncbi_organism_name: Acetobacter malorum

ncbi_submitter: Cornell University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_assembly_name: assembly Coobra isolate 8

ncbi_isolation_source: Alpha-amylase enzym 4g (Coobra)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Sciensano


ncbi_country: Switzerland: Basel

ncbi_isolation_source: clinical sample

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_assembly_name: freshwater MAG --- Ja1_bin-2461

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_country: China: Heilongjiang Province

ncbi_isolation_source: cucumber rhizosphere

ncbi_organism_name: Fictibacillus enclensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: Japan: Yamanashi; Kiyosato Hokuto-shi

ncbi_isolate: Adelges kitamiensis 18-608

ncbi_strain_identifiers: Adelges kitamiensis 18-608

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidatus Vallotiella;x__unclassified Candidatus Vallotiella;s__Candidatus Vallotiella sp. (ex Adelges kitamiensis)


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay bottom sediments

ncbi_organism_name: Desulfovibrio sp. X2

ncbi_submitter: Oak Ridge National Lab


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Sao Paulo


ncbi_country: United Kingdom: Esthwaite Water

ncbi_isolation_source: Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water

ncbi_organism_name: Burkholderiales bacterium PBB6

ncbi_submitter: CNRS-AMU


ncbi_country: South Africa

ncbi_organism_name: Pleomorphomonas koreensis DSM 23070

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG14033

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_country: Germany

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SurvCARE


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R664;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Taiwan

ncbi_isolation_source: Taichung Veterans General Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Chung Cheng University


ncbi_assembly_name: Salmonella enterica CVM 43799 v1.0

ncbi_country: USA

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 118

ncbi_organism_name: Staphylococcus arlettae

ncbi_strain_identifiers: SNUC 1401

ncbi_submitter: University of Calgary


ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater effluent sample

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Roseateles sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China

ncbi_organism_name: Chryseobacterium paridis

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Spain: Formentera; Pityuses; Balearic Islands

ncbi_isolation_source: sea coast [ENVO:00000303]|shoreline [ENVO:00000486]|rhizosphere [ENVO:00005801]

ncbi_organism_name: Bacillus sp. RHFS10

ncbi_submitter: University of Naples Federico II

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RHFS10


ncbi_organism_name: Saccharothrix violaceirubra

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Butyricicoccus faecihominis

ncbi_submitter: University College Cork


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: kefir

ncbi_organism_name: Lentilactobacillus parakefiri

ncbi_strain_identifiers: KR

ncbi_submitter: SysMilk


ncbi_organism_name: Streptomyces lividans TK24

ncbi_submitter: Broad Institute


ncbi_organism_name: Collinsella sp. LCP21S3_C3

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Viet Nam

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Czech Republic

ncbi_isolation_source: CSF


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: James Cook University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Companilactobacillus paralimentarius

ncbi_submitter: VRIJE UNIVERSITEIT BRUSSEL


ncbi_organism_name: Klebsiella aerogenes


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Duodenibacillus massiliensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: USA: Ohio

ncbi_submitter: USDA


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Pseudomonas sp. MYb2

ncbi_submitter: Zoological Institute, Kiel University


ncbi_country: Algeria: Medea

ncbi_isolation_source: lymph nodes

ncbi_organism_name: Pseudochrobactrum algeriensis

ncbi_submitter: INRAE - Institut national de recherche pour l'agriculture, l'alimentation et l'environnement


ncbi_assembly_name: IMG-taxon 2593339195 annotated assembly

ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: Pacific Ocean: Northwest

ncbi_isolation_source: deep water

ncbi_organism_name: Idiomarina zobellii

ncbi_strain_identifiers: KMM 231

ncbi_submitter: University of New Hampshire - Manchester


ncbi_country: China: Hangzhou

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Extensimonas soli

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: China: Zhengzhou

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Burkholderia mallei

ncbi_strain_identifiers: JHU

ncbi_submitter: USAMRIID


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Pseudomonas protegens CHA0

ncbi_submitter: Biology Centre CAS


ncbi_country: South Africa: Rietvlei

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0090

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Thailand: Saraburi

ncbi_isolation_source: rice root

ncbi_organism_name: Chitinophaga oryzae

ncbi_submitter: King Mongkut's Institute of Technology Ladkraabang