ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Banfield Lab, University of California, Berkeley


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Klebsiella pneumoniae


ncbi_assembly_level: Contig


ncbi_country: China

ncbi_isolation_source: ICU

ncbi_submitter: Guangzhou Medical University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_assembly_level: Chromosome

ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TRS12

ncbi_submitter: Vanderbilt University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Campylobacter hominis

ncbi_submitter: SC

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Bacillus sp. FSL L8-0528

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL L8-0528


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: uncultured Clostridium sp.


gtdb_representative: t

ncbi_country: USA: WA

ncbi_isolation_source: Oncorynchus kisutch

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;s__Flavobacterium psychrophilum;x__Flavobacterium psychrophilum DSM 3660 = ATCC 49418


ncbi_organism_name: uncultured Cyclobacteriaceae bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_isolation_source: terrestrial

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Bacteroides clarus

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Treponema sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human feces metagenome


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE67

ncbi_submitter: Broad Institute


gtdb_type_species_of_genus: t

ncbi_isolation_source: source of origin unknown

ncbi_strain_identifiers: DSM 507

ncbi_submitter: Georg-August-University Goettingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Aliivibrio;s__Aliivibrio fischeri;x__Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter bizzozeronii

ncbi_submitter: University of Antwerp, Belgium


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_submitter: Public Health Laboratory


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas taiwanensis


ncbi_country: China: Heilongjiang

ncbi_isolation_source: Bovine; diarrhoea; faecal isolate

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Genome Center


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Terrestrial

ncbi_organism_name: Nodosilinea sp. FACHB-13

ncbi_submitter: South China Normal University


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The First Affiliated Hospital of College of Medicine, Zhejiang University


ncbi_country: China: South China Sea

ncbi_isolation_source: Deep sediment

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: Enterobacter cloacae complex sp. IR5379

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5379


ncbi_country: China: Suzhou

ncbi_isolation_source: hospital wastewater

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: USA: Waikapalae cave; Hawaii

ncbi_isolation_source: cave walls

ncbi_organism_name: Stenomitos rutilans HA7619-LM2

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Pseudomonas sp. CCC4.1

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_submitter: Christian Medical College


ncbi_country: USA: MD

ncbi_isolation_source: oyster

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: China: Innermogolia

ncbi_isolation_source: sediments

ncbi_organism_name: Desulfamplus sp.

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Desulfoferula mesophila

ncbi_refseq_category: reference genome

ncbi_submitter: Institute of Low Temperature Science, Hokkaido University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Acinetobacter sp. MD2

ncbi_submitter: Cornell University


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Blautia sp. MCC289

ncbi_submitter: University College Cork


ncbi_country: Viet Nam

ncbi_isolation_source: stomach

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Arizona


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: periprosthetic tissue specimen

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: Saudi Arabia: Thuwal

ncbi_isolation_source: deep sea sediment in Red Sea

ncbi_submitter: CBRC, KAUST


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: isolate

ncbi_isolation_source: Horse

ncbi_organism_name: Brucella intermedia

ncbi_strain_identifiers: isolate

ncbi_submitter: Faculty of Health Sciences


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: China: Changbai Mountain

ncbi_isolation_source: black soil

ncbi_organism_name: Acinetobacter sp. BS1

ncbi_submitter: Fudan University


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Bacteroides acidifaciens


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hazara University


ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: marine

ncbi_organism_name: Maribacter sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H84958

ncbi_submitter: Broad Institute


ncbi_country: Lithuania

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Hospital of North Norway


ncbi_assembly_name: Salmonella enterica CVM 43750 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_isolation_source: Haemodialysis water

ncbi_organism_name: Roseateles puraquae

ncbi_submitter: Northwest A&F University


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Neobacillus sp.

ncbi_submitter: Colorado State University


ncbi_country: Guinea-Bissau

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: ACVGN

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Singapore

ncbi_isolation_source: air

ncbi_organism_name: Agrococcus sp. SGAir0287

ncbi_submitter: Nanyang Technological University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_strain_identifiers: Bir 184


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_isolation_source: sheep gut metagenome


ncbi_country: Chile: Puerto Guadal; Aysen Region

ncbi_isolation_source: soil

ncbi_organism_name: Acidithiobacillus sp. PG05

ncbi_submitter: UNAB


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_country: Germany: Hamburg

ncbi_organism_name: Nitrosospira sp. Nsp2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: Butyricimonas faecihominis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio mediterranei

ncbi_submitter: NSW Department of Primary Industries


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Broad Institute


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.783 MAG

ncbi_isolate: bin.783 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Owenweeksia sp. TMED14

ncbi_strain_identifiers: bin.783 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_country: France

ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: EMG


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Clostridioides difficile DA00128

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M20894


ncbi_strain_identifiers: Philadelphia 1

ncbi_submitter: Columbia Genome Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella;s__Legionella pneumophila;sb__Legionella pneumophila subsp. pneumophila;x__Legionella pneumophila subsp. pneumophila str. Philadelphia 1


ncbi_country: Japan

ncbi_organism_name: Azospirillum sp. TSH100

ncbi_submitter: Nanjing Tech University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-222

ncbi_submitter: JCVI


ncbi_organism_name: Streptomyces rubrogriseus

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: Netherlands

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean

ncbi_isolation_source: water

ncbi_organism_name: Prochlorococcus marinus str. MIT 0912

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Prochlorococcaceae;g__Prochlorococcus;s__Prochlorococcus marinus;x__Prochlorococcus marinus str. MIT 0912


ncbi_assembly_name: IMG-taxon 2597490342 annotated assembly

ncbi_organism_name: Azotobacter beijerinckii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: uncultured Limnohabitans sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Croatia: Rovinj

ncbi_isolation_source: sponge

ncbi_organism_name: Micromonospora sp. RV43

ncbi_submitter: University of Wuerzburg


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_country: USA: IA

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Screen swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: not known


ncbi_country: China: Sinkiang

ncbi_isolation_source: home-made cheese

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Pakistan: Sindh

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Mohammad Ali Jinnah University


ncbi_organism_name: Serratia ficaria


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridium sp. AF12-19

ncbi_submitter: BGI


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: FDA/CFSAN


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: USA

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM418

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Segatella salivae

ncbi_submitter: EMG


ncbi_country: Japan:Shizuoka; Atami Botanical Research Garden

ncbi_organism_name: Pseudanabaena sp. ABRG5-3

ncbi_submitter: Department of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo


ncbi_country: France

ncbi_organism_name: Pseudomonas sp. Marseille-Q1929

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Facultad de Quimica


ncbi_organism_name: Alistipes sp.


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Aminobacterium sp. UBA4902

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Georgia

ncbi_isolation_source: Matsoni fermented milk product

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Ljubljana


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Bdellovibrionales bacterium


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of South Florida


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Brucella lupini

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: National Cheng Kung University Hospital


ncbi_organism_name: Xenorhabdus nematophila

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Isosphaeraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Agrobacterium sp.


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Psychroserpens sp. S379A

ncbi_submitter: Shenzhen University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Acinetobacter sp. TY2

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: University of Alberta


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: University Hospital Center and University of Lausanne


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Fimisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimisoma;x__unclassified Candidatus Fimisoma;s__Candidatus Fimisoma sp.


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: pig gut metagenome


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Mycoplasma sp. 1458C

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Gemmatimonadetes bacterium T265

ncbi_submitter: Hirosaki University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__unclassified Gemmatimonadota;s__Gemmatimonadetes bacterium T265


ncbi_organism_name: Bradyrhizobium sp. F1.2.8

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Niger

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Japan

ncbi_isolation_source: soy sauce

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Austria: Innsbruck

ncbi_isolation_source: glacier s cryoconite from Alps mountain

ncbi_organism_name: Janthinobacterium lividum PAMC 25724

ncbi_submitter: korea Polar Research Institute


ncbi_country: USA: Madison; Wisconsin

ncbi_organism_name: Francisella philomiragia


ncbi_country: India: Vellore

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Christian Medical College


ncbi_country: Sweden

ncbi_isolation_source: lymph galnd

ncbi_organism_name: Mycobacterium tuberculosis BTB04-001

ncbi_submitter: Broad Institute


ncbi_country: Greece

ncbi_isolation_source: catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Larissa


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Christiangramia sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia:Valle del Cauca;Bahia Malaga

ncbi_isolation_source: mud

ncbi_organism_name: Pseudoalteromonas xiamenensis

ncbi_strain_identifiers: PSDB

ncbi_submitter: Universidad de los Andes


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: China

ncbi_isolation_source: spoiled jelly

ncbi_organism_name: Sporolactobacillus pectinivorans

ncbi_submitter: Shenzhen Academy of Metrology and Quality Inspection


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: soil

ncbi_organism_name: Prescottella equi

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Thermoanaerobacterium saccharolyticum

ncbi_submitter: Lab. of Aqua. Mol. Biol. and Biotech.


ncbi_organism_name: Streptomyces sp. NPDC002328

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Rumen uncultured genome RUG12528

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: New Hampshire

ncbi_isolation_source: transverse colon lumen

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of New Hampshire


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: EMG


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium RIFCSPHIGHO2_12_FULL_50_11


ncbi_organism_name: uncultured Methylocucumis sp.


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: wastewater

ncbi_organism_name: Trichococcus sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital,School of Medicine,Zhejiang University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: China:Jiangsu Province

ncbi_isolation_source: local geographical source

ncbi_organism_name: Priestia flexa

ncbi_strain_identifiers: KLBMP 4941

ncbi_submitter: Jiangsu Normal University


ncbi_country: USA: Durham; NC

ncbi_isolation_source: urine; straight cath

ncbi_submitter: University of Alabama in Huntsville


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany

ncbi_isolation_source: environment

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: India: Arabian Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National Institute of Ocean Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Oxalobacteraceae bacterium


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_country: China: south China sea

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Janibacter cremeus

ncbi_strain_identifiers: SCSIO 52865

ncbi_submitter: South China Sea Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_organism_name: Arthrospira sp. PLM2.Bin9

ncbi_submitter: University of Calgary


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: JCVI


ncbi_organism_name: Alloprevotella sp.


ncbi_country: Finland

ncbi_organism_name: Streptococcus halichoeri

ncbi_submitter: Helsinki University


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom:Hertfordshire

ncbi_isolation_source: wound


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium CG1_02_31_12


ncbi_assembly_name: 19_85 assembly

ncbi_isolation_source: Animal

ncbi_submitter: inrae nouzilly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Santa Barbara Zoo

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: University of Chicago


ncbi_country: Malaysia

ncbi_isolation_source: chili

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Malaya


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Aga Khan University Hospital


ncbi_country: Burkina Faso

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: coastal sediment

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: freshwater aquarium

ncbi_organism_name: Fortiea contorta PCC 7126

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Fortieaceae;g__Fortiea;s__Fortiea contorta;x__Fortiea contorta PCC 7126


ncbi_isolate: Vin1 symbiont

ncbi_isolation_source: Vangueria infausta leaf

ncbi_organism_name: uncultured Paraburkholderia sp.

ncbi_strain_identifiers: Vin1 symbiont

ncbi_submitter: inrae toulouse


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: China: Qinghai

ncbi_isolation_source: sediment

ncbi_organism_name: Ornithinimicrobium cryptoxanthini

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: South Korea: Gyeonggi-do

ncbi_isolation_source: chicken meat

ncbi_submitter: Korea University Graduate School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4:-:1,2


ncbi_isolation_source: marine

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: INRA


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan: Okayama

ncbi_isolation_source: supragingival dental plaque

ncbi_organism_name: Capnocytophaga haemolytica

ncbi_submitter: The Forsyth Institute


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Candidatus Brocadiia bacterium

ncbi_submitter: NanJing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;x__unclassified Candidatus Brocadiia;s__Candidatus Brocadiia bacterium


ncbi_country: China: Wenzhou

ncbi_isolation_source: Seawater and soil samples

ncbi_organism_name: Stenotrophomonas sp. TD3

ncbi_submitter: Wenzhou University


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-244

ncbi_submitter: Broad Institute


ncbi_country: Sweden: Orebro

ncbi_isolation_source: cornea

ncbi_organism_name: Corynebacterium macginleyi

ncbi_submitter: Aarhus University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: SCUT


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D5_bin-0047

ncbi_organism_name: uncultured Rhodopila sp.

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alloprevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Granulicatella sp.


ncbi_country: Brazil

ncbi_isolation_source: kidney

ncbi_organism_name: Francisella orientalis

ncbi_submitter: Aquacen - National Reference Laboratory for Aquatic Animal Diseases, Brazilian Ministry of Fisheries and Aquaculture and Laboratory of Cellular and Molecular Genetics, Federal University of Minas Gerais


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa JD335

ncbi_submitter: University of Ottawa


ncbi_country: Malaysia: Pantai Sekinchan; Selangor

ncbi_isolation_source: Ex-situ cultivation bioreactor using corn curb in a mixture of seawater; seawater sediment; and sea mud

ncbi_organism_name: Roseovarius sp. PS-C2

ncbi_submitter: Malaysia Genome Institute, National Institutes of Biotechnology Malaysia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Belgium: Ghent

ncbi_isolation_source: milk samples

ncbi_submitter: ANIWHA


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: South Carolina

ncbi_isolation_source: feces

ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: University of Connecticut Graf Lab


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: IMG-taxon 2622736502 annotated assembly

ncbi_organism_name: Aquimarina spongiae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Ireland

ncbi_organism_name: Fructobacillus fructosus

ncbi_submitter: Teagasc Food Research Centre


ncbi_isolation_source: terrestrial

ncbi_organism_name: Thermotoga petrophila

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Blautia sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Iamiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Coastal Water

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_country: China: Weihai

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodohalobacter mucosus

ncbi_submitter: Shandong University


ncbi_country: South Korea:Seoul

ncbi_organism_name: Microbacterium testaceum

ncbi_submitter: Seoul National University


ncbi_isolation_source: aspirate left nose

ncbi_organism_name: Pseudomonas sp. HMSC058C05

ncbi_submitter: The Genome Institute at Washington University


ncbi_submitter: ICLAS Monitoring Center, Central Institute for Experimental Animals


ncbi_country: Bangladesh

ncbi_isolation_source: clinical sample

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus sp. HMSC056D01


ncbi_country: France

ncbi_submitter: Rennes Hospital


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC052610

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Fusobacteriaceae bacterium AM62-5ACA

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ningbo University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Northeast Forestry University


ncbi_country: USA: Georgia

ncbi_isolation_source: Vidalia onion field

ncbi_organism_name: Pantoea stewartii subsp. indologenes

ncbi_strain_identifiers: PANS 07-4

ncbi_submitter: University of Georgia


ncbi_country: USA: New York

ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae NYC_2011_05_13

ncbi_submitter: Read Laboratory, Emory University


ncbi_organism_name: Halomonas organivorans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: South Africa: Durban

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Brazil: Belem

ncbi_isolation_source: water

ncbi_submitter: University of Sao Paulo


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: Oral microbiome

ncbi_organism_name: Weissella confusa

ncbi_strain_identifiers: NN 1

ncbi_submitter: Sofia University "St. Kliment Ohridski"


ncbi_country: France: CHU Rennes Pontchaillou

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_isolation_source: compost

ncbi_organism_name: Thermoactinomyces vulgaris

ncbi_submitter: NCAUR-ARS-USDA


ncbi_organism_name: Acinetobacter baumannii 45002_8

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Italy: Province of Bologna

ncbi_organism_name: Campylobacter vulpis

ncbi_submitter: C. vulpis


ncbi_country: China: guangzhou

ncbi_submitter: Zhujiang Hospital, Southern Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: ileum

ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: University of Minnesota


ncbi_country: USA: Chicago

ncbi_isolation_source: blood

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_submitter: JCVI


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Psychrobacter sp. 2U2

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Chromohalobacter canadensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_submitter: Center for Microbial Communities


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: USDA, ARS, WRRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Shanghai CDC


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fusobacteriota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Fusobacteriati;p__Fusobacteriota;x__environmental samples;s__uncultured Fusobacteriota bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: University of Szeged


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-a_bin-204

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Sphingopyxis sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: USA: GA

ncbi_isolation_source: Young Chickens

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N60252F

ncbi_submitter: FDA


ncbi_country: Italy

ncbi_isolation_source: Blood culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain: Santander

ncbi_isolation_source: Picon Bejes-Tresviso cheese

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Institute of Biomedicine and Biotechnology of Cantabria (IBBTEC), Intergenomics group


ncbi_country: Russia: Taman Peninsula; Golubitskoye Lake

ncbi_isolation_source: enrichment culture from mud volcano

ncbi_organism_name: Gudongella sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Borreliella garinii

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: Animal and Plant Health Agency


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_submitter: CRC AquaDiva


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_submitter: University of Bern


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Konstanz


ncbi_country: USA: Ohio

ncbi_isolation_source: intra-abdominal

ncbi_submitter: JCVI


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: Human

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Infection, Veterinary & Ecological Sciences


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Prevotella sp. UBA3837

ncbi_submitter: University of Queensland


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: China: Yellow Sea and East China Sea

ncbi_isolation_source: soil sediment

ncbi_organism_name: Exiguobacterium sp. s35

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s35


ncbi_organism_name: Peribacillus castrilensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus urinae

ncbi_submitter: Loyola University Chicago


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: stool


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: uncultured Sulfurovum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_organism_name: Synergistota bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: dental calculus from oral cavity

ncbi_organism_name: Tetzosporium hominis

ncbi_submitter: Human Microbiology Institute


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Canada: Sarnia oil refinery

ncbi_isolation_source: Carbon granules from GAC filter

ncbi_organism_name: Candidatus Manganitrophus sp.

ncbi_submitter: Western University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Candidatus Troglogloeales;f__Candidatus Manganitrophaceae;g__Candidatus Manganitrophus;x__unclassified Candidatus Manganitrophus;s__Candidatus Manganitrophus sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWF2_33_16

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWF2_33_16


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Leon University


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Iran: Tehran

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Puerto Rico: Maunabo

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia sp. Bp9090

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Erwinia sp. E_sp_B04_8

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 314

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_submitter: University of Bern


ncbi_organism_name: Ralstonia pickettii


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_isolation_source: clinical material

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Enterobacter hormaechei


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Klebsiella sp. 141219

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Tateyamaria sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Shanghai

ncbi_isolation_source: intestines

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: CAS Center for Excellence in Molecular Plant Sciences


ncbi_organism_name: Coprothermobacter proteolyticus

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE2

ncbi_isolation_source: lake water

ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Michigan


ncbi_country: Spain

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_organism_name: Saccharicrinis sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Shenzhen

ncbi_isolation_source: Bloodstream

ncbi_organism_name: Peptoniphilus genitalis

ncbi_submitter: The Seventh Affiliated Hospital, Sun Yat-sen University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA: University Park

ncbi_organism_name: Picosynechococcus sp. PCC 8807

ncbi_submitter: Pennsylvania State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_assembly_name: Rumen uncultured genome RUG11801

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: MS

ncbi_isolation_source: Arm

ncbi_organism_name: Staphylococcus aureus DAR3933

ncbi_submitter: Broad Institute


ncbi_isolation_source: Groin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_organism_name: Cyanobacteria bacterium J06597_16

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06597_16


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf081

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: uncultured Syntrophobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Sedimenticola;x__unclassified Sedimenticola;s__Candidatus Sedimenticola sp. (ex Thyasira tokunagai)


ncbi_country: USA

ncbi_organism_name: Bordetella pertussis STO1-CHOC-0018

ncbi_submitter: JCVI


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: silage

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Loigolactobacillus;s__Loigolactobacillus coryniformis;sb__Loigolactobacillus coryniformis subsp. coryniformis;x__Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001


ncbi_isolate: AOP32_A1_surf _bin _5

ncbi_organism_name: Corynebacterium sp.

ncbi_strain_identifiers: AOP32_A1_surf _bin _5

ncbi_submitter: Genoscope


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: South Korea: Buyeo-gun

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Seoul National University


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Seattle

ncbi_isolation_source: vagina

ncbi_organism_name: Gardnerella sp. DNF01162

ncbi_submitter: University of Washington


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: feces

ncbi_organism_name: Enterocloster clostridioformis


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: ruminal fluid

ncbi_organism_name: Selenomonas caprae

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: Milaca; MN

ncbi_organism_name: Chryseobacterium ginsenosidimutans

ncbi_strain_identifiers: THG 15

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica bacterium RIFCSPLOWO2_01_FULL_45_10


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus capitis


ncbi_country: USA: NY

ncbi_organism_name: Staphylococcus aureus DAR951

ncbi_submitter: Broad Institute


ncbi_isolation_source: maize fermentation

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: USA: California

ncbi_isolation_source: rectal swab from healthy college student

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_country: China: Hangzhou

ncbi_isolation_source: puncture fluid

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Synergistes jonesii

ncbi_submitter: European Bioinformatics Institute


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolate: Nitrospira sp. RBC073

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Nitrospira sp.

ncbi_strain_identifiers: Nitrospira sp. RBC073

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Coprococcus catus

ncbi_submitter: University of Chicago


ncbi_country: Poland: Warsaw

ncbi_isolation_source: conjugation experiment

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Medicines Institute


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiohalobacter sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Peru: Independence Bay

ncbi_organism_name: Vibrio mediterranei

ncbi_submitter: Universidad Cientifica del Sur


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Elusimicrobiales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacillus mobilis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bacteroides acidifaciens


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7222


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Actinomyces graevenitzii


ncbi_organism_name: uncultured Synergistales bacterium


ncbi_country: USA: Decorah; IA

ncbi_organism_name: Pseudomonas reinekei

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acidomonas methanolica

ncbi_strain_identifiers: NRIC 0498

ncbi_submitter: Tokyo University of Agriculture


ncbi_assembly_name: freshwater MAG --- Ki2-D1_bin-0520

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Germany: Freising

ncbi_isolation_source: feces

ncbi_organism_name: Eisenbergiella porci

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Group Que, Inselspital Bern


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Infective secretion

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China agricultural university


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Brucellaceae bacterium UBA2630

ncbi_submitter: University of Queensland


ncbi_country: Turkey

ncbi_organism_name: Rhodobacter capsulatus

ncbi_submitter: Istanbul Technical University, Institute of Science


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Henan

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Serbia: Crnjelovo-Bijelina

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: peanut butter

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: human gut

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_organism_name: Candidatus Scatomorpha merdavium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha merdavium


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Sphingobacterium siyangense

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: Mycoplasma sp. 6243

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Purdue University


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Mississippi State University


ncbi_organism_name: Thainema sp.

ncbi_submitter: Jadavpur University


ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chirstian Medical College


ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Photobacterium kagoshimensis

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: national health research institutes


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin87

ncbi_isolation_source: soil

ncbi_organism_name: bacterium

ncbi_strain_identifiers: MDV bin87

ncbi_submitter: Monash University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_submitter: Handley Lab, University of Auckland


ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Actinomyces oris


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Culicoidibacterales bacterium

ncbi_submitter: Sichuan University


ncbi_assembly_name: freshwater MAG --- Loc090519-5m_bin-0291

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: rinse from chicken carcass

ncbi_submitter: USDA-ARS-USNPRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: Pleural liquid

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: aspirate abdominal

ncbi_organism_name: Staphylococcus sp. HMSC066C03

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia sp. AF02-12

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Czech Republic

ncbi_isolation_source: roes

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_strain_identifiers: jikry 5

ncbi_submitter: Masaryk University


ncbi_isolation_source: blood of laboratory mouse

ncbi_organism_name: Borrelia hermsii MTW

ncbi_strain_identifiers: MTW

ncbi_submitter: Integrated Genomics


ncbi_organism_name: Bergeyella sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Actinomyces urogenitalis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: California; Modesto

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Jiangsu

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Brazil: Savana

ncbi_isolation_source: endophyte

ncbi_organism_name: Pseudomonas sp. UFMG81

ncbi_submitter: Federal University of Minas Gerais


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Lutibacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Fusobacterium sp.


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Escherichia coli 681

ncbi_submitter: University Medical Center Utrecht


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Auburn University


ncbi_organism_name: Faecalibacillus faecis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: sea water

ncbi_organism_name: Bacteroidetes bacterium MED-G20

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium MED-G20


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Montana State University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Xanthomonas phaseoli

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Zhejiang

ncbi_isolation_source: root

ncbi_organism_name: Herbaspirillum rubrisubalbicans

ncbi_submitter: Zhejiang University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Rumen uncultured genome RUG12730

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Hong Kong

ncbi_isolation_source: biofilm full-scale rotating biological contactor (RBC)

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: GA

ncbi_isolation_source: mushroom

ncbi_organism_name: Listeria monocytogenes


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-63

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_strain_identifiers: new MAG-63

ncbi_submitter: Micoorganism


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Pleural Tube

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Qinghai

ncbi_organism_name: Apibacter sp. B3883

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa NCGM2.S1

ncbi_submitter: National Center for Global Health and Medicine


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Moritella dasanensis ArB 0140

ncbi_submitter: Nanjing Agriculture University


ncbi_country: United Kingdom:Preston

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Corynebacterium matruchotii


ncbi_country: Mexico: Llibres; Puebla

ncbi_isolation_source: Biological sample (left flank of goat)

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Sri Lanka: Batticaloae

ncbi_isolation_source: blood and joint fluid of melioidosis patient

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: General Sir John Kotelawala Defence Uinversity


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_country: USA: Greene County; Ohio

ncbi_isolation_source: groundwater well (0.1 _m fraction)

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium Gr01-1014_3


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_submitter: Christian Medical College


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1017

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_isolate: Fecal samples

ncbi_isolation_source: ALLERGYFLORA birth-cohort

ncbi_strain_identifiers: Fecal samples

ncbi_submitter: UMR 1137 IAME


ncbi_country: Brazil: Sao Jose do Rio Preto

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: FAMERP


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Slovenia

ncbi_organism_name: Prevotella sp. E9-3

ncbi_submitter: University of Ljubljana


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Bacteroidetes bacterium ADurb.BinA395

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium ADurb.BinA395


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: Hong Kong:Kiu Tsui Chau

ncbi_organism_name: Roseobacter sp. HKCCD4356

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWC1_45_9


ncbi_country: China:Hebei; Zhangjiakou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Academy of Medical Sciences &Peking Union Medical College


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA3595

ncbi_submitter: University of Queensland


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology