ncbi_organism_name: Candidatus Kerfeldbacteria bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;x__unclassified Candidatus Kerfeldbacteria;s__Candidatus Kerfeldbacteria bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


gtdb_representative: f

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_assembly_level: Scaffold

ncbi_organism_name: Deferrisomatales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: University of Fribourg


ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Desulfobacterium sp. N47

ncbi_submitter: University of Duisburg-Essen


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Haukeland University Hospital


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Academia Sinica


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: small intestine

ncbi_organism_name: Vagococcus martis

ncbi_refseq_category: reference genome

ncbi_submitter: Kyung Hee University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_country: Iceland

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans 66-2A

ncbi_submitter: Cornell University


ncbi_country: USA: MD

ncbi_organism_name: Shigella boydii

ncbi_strain_identifiers: DMB SH129

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Clostridium beijerinckii

ncbi_strain_identifiers: NRRL B-528

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidiferrobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: United Kingdom

ncbi_strain_identifiers: Buibui

ncbi_submitter: University of Bath

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar japonensis


ncbi_isolation_source: intestinal content

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: ChinaCDC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: dtu national food institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Nitrosopumilus sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica bacterium RIFCSPHIGHO2_02_FULL_46_11


ncbi_submitter: National Chung Hsing University


ncbi_country: Thailand


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: Actinidia chinensis

ncbi_organism_name: Pseudomonas savastanoi

ncbi_submitter: Zhongkai University of Agriculture and Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi


ncbi_country: China

ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter cumulans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Minas Gerais; Nova Lima; Iron quadrangle

ncbi_isolation_source: stalk

ncbi_organism_name: Curtobacterium flaccumfaciens

ncbi_submitter: BIGA


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: Guangxi University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: chlorinated drinking water; site 4

ncbi_organism_name: Porphyrobacter sp.

ncbi_submitter: University of Glasgow


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: Biomin Research Center


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The General Hospital of the People's Liberation Army


ncbi_assembly_name: freshwater MAG --- KR2_bin-0523

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: La Porte; Indiana

ncbi_organism_name: Pseudomonas congelans

ncbi_submitter: Max Planck Institute


ncbi_country: Netherlands

ncbi_isolation_source: Dept of Medical Microbiology; University Medical Center Groningen

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Rhodanobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Korea

ncbi_isolation_source: Korean fermented food

ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: Korea Food Research Institute


ncbi_country: Russia: left bank of the Anyuy River; Chukotka; Arctic Far East

ncbi_isolation_source: the small intestine of a 50000 y.o. permafrost Bison priscus mummy

ncbi_organism_name: Paenibacillus sp. BGI2013

ncbi_submitter: ANBIS


ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Taibai Mountain in Shaanxi Province

ncbi_isolation_source: surface-sterilized stem

ncbi_organism_name: Solirubrobacter taibaiensis

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Pelagimonas sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Pakistan: Faisalabad; Dairy Farm

ncbi_isolation_source: cattle farm waste water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__Bacteroidota incertae sedis;s__Candidatus [Bacteroides] periocalifornicus


ncbi_country: Ireland

ncbi_isolation_source: Skim milk powder (medium heat)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Teagasc Agriculture and Food Development Authority


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of California Berkeley


ncbi_submitter: Southwest University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA4995

ncbi_submitter: University of Queensland


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit meat cut

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Uruguay: Rio Negro

ncbi_isolation_source: lymph nodes

ncbi_submitter: Institut Pasteur de Montevideo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hydrogenoanaerobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 co-cultured with S. maltophilia 8 g/ml treated Synthetic Cystic Fibrosis Media for 24 days

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Idiomarina abyssalis


ncbi_country: Mali: Sgou Niono

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: University of Florida


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Harvard University


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_assembly_level: Chromosome

ncbi_organism_name: Thiomonas sp. OC7

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp. OC7


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: pig gut metagenome


ncbi_isolation_source: Faeces


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Helicobacter winghamensis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: BGI


ncbi_organism_name: Pseudomonas putida KT2440

ncbi_submitter: TIGR


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Lysobacter sp.

ncbi_submitter: Colorado State University


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 302

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SNUC 1352

ncbi_submitter: University of Calgary


ncbi_country: China: Luoyang

ncbi_isolation_source: cave

ncbi_organism_name: Ornithinimicrobium cavernae

ncbi_submitter: Sun Yat-sen University


ncbi_country: Japan:Okianwa; Miyakojima; Higashihenna cape

ncbi_organism_name: Mesorhizobium sp. L-2-11

ncbi_submitter: Sato Lab., Molecular Genetics and Physiology, Graduate School of Life Sciences, Tohoku University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Abuja


ncbi_country: Gambia: Basse Santa Su

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Burkholderiales bacterium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Agrobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kasetsart University


ncbi_organism_name: Capnocytophaga granulosa

ncbi_submitter: SC


ncbi_isolation_source: sediment

ncbi_organism_name: Microbacterium esteraromaticum

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces sp. NPDC000658

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: EMG


ncbi_organism_name: Xanthomonas vesicatoria

ncbi_strain_identifiers: WHRI 8302

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Coprococcus sp.


ncbi_country: South Korea

ncbi_isolation_source: Korean traditional nuruk

ncbi_organism_name: Paenibacillus nuruki

ncbi_submitter: National Academy of Agrigultural Science


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. H27-G5

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Stockholm University


ncbi_country: China

ncbi_isolation_source: Procapra picticaudata

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: China CDC


ncbi_country: Kenya

ncbi_isolation_source: blood

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Erythrobacteraceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: Colombia: Antioquia; Bello

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antioquia


ncbi_country: Spain

ncbi_isolation_source: drinking water

ncbi_organism_name: Methylobacterium adhaesivum

ncbi_strain_identifiers: CECT 7069

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_organism_name: Metabacillus bambusae

ncbi_submitter: Chungnam National University


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Seoul

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yonsei University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_assembly_name: Rumen uncultured genome RUG13906

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Japan: Tokyo

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The University of Tokyo Hospital


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Cytobacillus sp. IB215316

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterococcus faecalis F01966

ncbi_submitter: The Genome Institute


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab arm

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_country: China: Jilin

ncbi_organism_name: Bifidobacterium sp. M0353

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudomonas sp. EL_65y_Pfl2_R96

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Skin wing membrane

ncbi_organism_name: Staphylococcus kloosii

ncbi_submitter: University of Bath


ncbi_organism_name: Lysinibacillus irui

ncbi_submitter: Universidade do Porto


ncbi_organism_name: Bacillus thuringiensis serovar muju

ncbi_strain_identifiers: BGSC 4BL1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar muju


ncbi_country: Ghana

ncbi_isolation_source: Human sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: TU Delft


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Paratractidigestivibacter sp.


ncbi_country: Australia: Melbourne

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cepheid


ncbi_organism_name: Xanthomonas sp. PPL139

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NT

ncbi_submitter: SC


ncbi_country: USA: TX

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point D

ncbi_organism_name: Sulfuricurvum sp. RIFOXYD12_FULL_44_77

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Patulibacter defluvii

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Streptomyces spiralis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Desulfonatronovibrionaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Prosthecobacter debontii

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Maribacter confluentis

ncbi_strain_identifiers: CECT 8869


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Candidatus Minusculum obligatum

ncbi_submitter: University of Maryland Center for Environmental Science

ncbi_taxonomy: d__Bacteria;p__Minisyncoccota;c__Minisyncoccia;o__Candidatus Phycocordibacterales;f__Candidatus Phycocordibacteraceae;g__Candidatus Minusculum;s__Candidatus Minusculum obligatum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Candidatus Phycocordibacterales;f__Candidatus Phycocordibacteraceae;g__Candidatus Minusculum;s__Candidatus Minusculum obligatum


ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Peptococcaceae bacterium


ncbi_organism_name: Desulfonatronovibrio sp.


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella sp. NW477

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Draconibacterium sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Aestuariivita sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Wolbachia sp.

ncbi_submitter: Northwest A&F University


ncbi_assembly_name: freshwater MAG --- E-3_bin-137

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Madurai Kamaraj University


ncbi_country: China

ncbi_isolation_source: lagoon

ncbi_organism_name: Croceicoccus estronivorus

ncbi_submitter: institue of urban environment


ncbi_country: Spain: Santa pola

ncbi_isolation_source: banquettes

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: University of Alicante


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei MSHR4377

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Acidaminococcus sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Yersinia pestis K11973002

ncbi_submitter: Beijing Genomics Institute


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: CO; Palisade

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Mailhella merdavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: rice straw

ncbi_organism_name: Actinoalloteichus caeruleus

ncbi_strain_identifiers: NRRL B-2194

ncbi_submitter: University of Illinois


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Freie Universitaet Berlin


ncbi_country: Brazil: Vicosa

ncbi_isolation_source: dairy goats with persistent mastitis after therapy with enrofloxacin

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: UFMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_country: Germany

ncbi_isolation_source: environment

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_assembly_name: freshwater MAG --- Umea_bin-04588

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_country: USA: Washington; University Place

ncbi_isolation_source: One-stage PNA wastewater reactor

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Washington


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Pooled sheep fecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Nanjing

ncbi_isolation_source: hair of a 22-year-old girl

ncbi_organism_name: Sphingomonas hominis

ncbi_strain_identifiers: HHU CXW

ncbi_submitter: Hohai University


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_country: China: Wuhan

ncbi_isolation_source: seawater layers

ncbi_organism_name: Vreelandella aquamarina

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: environmental: river near WWTP effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Shewanella oncorhynchi

ncbi_submitter: Nofima


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Rennes

ncbi_isolation_source: Nasal carriage

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_organism_name: Mycoplasmoides gallisepticum

ncbi_submitter: Shandong Agricultural University


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin22

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: MDV bin22

ncbi_submitter: Monash University


ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Institute of Agricultural Resources and Environment, Guangdong Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Tomato Plant Rhizosphere

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Evtepia gabavorous


ncbi_country: Turkey: Central Anatolia; Kayseri

ncbi_isolation_source: fish farm

ncbi_organism_name: Pseudomonas sivasensis

ncbi_submitter: University of Balearic Islands


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_organism_name: Neisseria meningitidis alpha704

ncbi_submitter: CeBiTec


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Acidithiobacillus ferriphilus

ncbi_submitter: China University of Geosciences


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Comenius University Science Park


ncbi_country: Canada: Saanich Inlet 48; Vancouver Island; BC

ncbi_isolation_source: Intertidal zone

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Switzerland: Bern

ncbi_organism_name: Erysipelotrichaceae bacterium I46

ncbi_submitter: University of Bern


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Lewinella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Germany

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Bielefeld University


ncbi_organism_name: Streptomyces sp. NPDC088116

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Firmicutes bacterium CAG:341

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:341


ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tui Malila hydrothermal plume 10m

ncbi_organism_name: Campylobacterales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Brittany

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Anses


ncbi_country: France

ncbi_isolation_source: Minced meat


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 173 (3-9175482)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 173 (3-9175482)


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: the seqafrica consortium


ncbi_country: Japan

ncbi_isolation_source: throat swab

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Department of Bacteriology II, National Institute of Infectious Diseases


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU092

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Shigella flexneri K-227

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: lake water

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Life Sciences in Lublin


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: India: Nagpur

ncbi_isolation_source: Domestic sewage

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: India

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: WAGENINGEN UNIVERSITY, LABORATORY OF SYSTEMS AND SYNTHETIC BIOLOGY.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: ATCC BAA-2112

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_assembly_name: IMG-taxon 2700988689 annotated assembly

ncbi_organism_name: Fibrobacter sp. UWCM

ncbi_strain_identifiers: UWCM

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Yale

ncbi_isolation_source: Fresh water

ncbi_organism_name: Tolypothrix sp. PCC 7601

ncbi_submitter: Helmholtz - Centre for Environmental Research


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Instituto de Investigaciones Biomedicas, UNAM


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: freshwater lake Microcystis colony

ncbi_organism_name: Burkholderia sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: MRSA surveillance in man and animal


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: DGA CBRN Defence Center


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: New Zealand: Canterbury

ncbi_isolation_source: Shellfish

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Lincoln University


ncbi_country: South Korea: Jeju-do; Jeju-si; Doryeonnam 6-gil

ncbi_isolation_source: air

ncbi_organism_name: Hymenobacter aerilatus

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides sp. CF01-10NS

ncbi_submitter: BGI


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: University of Hohenheim

ncbi_isolate: SUNI

ncbi_isolation_source: beetle abdomen

ncbi_strain_identifiers: SUNI

ncbi_submitter: Johannes Gutenberg-University Mainz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Shikimatogenerans;s__Candidatus Shikimatogenerans bostrichidophilus


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Tissierella praeacuta

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Thailand

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Proteiniphilum sp. UBA5218

ncbi_submitter: University of Queensland


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany

ncbi_isolation_source: gut

ncbi_strain_identifiers: Isolate-013 (NCI)

ncbi_submitter: UniKlinik RWTH Aachen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-013 (NCI)


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Japan: Yokosuka

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: University of Texas at San Antonio


ncbi_organism_name: Neorhizobium galegae bv. orientalis

ncbi_submitter: UH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Halomonas pelophila

ncbi_submitter: Dongguk University


ncbi_country: China: Shanghai

ncbi_submitter: China Agricultural University


ncbi_country: Australia: Queensland

ncbi_isolation_source: bile

ncbi_organism_name: Campylobacter bilis

ncbi_submitter: RMIT University


ncbi_country: USA

ncbi_submitter: University of Minnesota


ncbi_country: Poland

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin N2.18

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Portnoybacteria bacterium

ncbi_strain_identifiers: bin N2.18

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;x__unclassified Candidatus Portnoybacteria;s__Candidatus Portnoybacteria bacterium


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus urinae

ncbi_submitter: Loyola University Chicago


ncbi_country: Spain

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University of Parma


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Enorma phocaeensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobaculum sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0532

ncbi_submitter: Broad Institute


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2134


ncbi_organism_name: Pseudomonas sp. MS646

ncbi_submitter: Mississippi State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificota bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Collinsella stercoris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Iowa State University


ncbi_organism_name: Streptomyces sp. NPDC088090

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC056049


ncbi_organism_name: Shewanella sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Sphingorhabdus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: MH-PR

ncbi_submitter: Armament and Defence Technology Agency


ncbi_submitter: Global Health Research Unit

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Blautia obeum


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Idiomarina sp. ST20R2A10

ncbi_submitter: Pavol Jozef Safarik University


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: EMG


ncbi_isolate: SPRUCE 472

ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_strain_identifiers: SPRUCE 472

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptomyces diastaticus


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Abditibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Colorado

ncbi_isolation_source: hyporheic zone

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus koreensis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: wound vulva

ncbi_organism_name: Corynebacterium sp. HMSC065H09

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Exeter


ncbi_country: South Korea: Yong-in

ncbi_isolation_source: tree

ncbi_organism_name: Hufsiella arboris

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_organism_name: Candidatus Olsenella avistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-238

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chromatiales bacterium

ncbi_strain_identifiers: new MAG-238

ncbi_submitter: Micoorganism


ncbi_organism_name: uncultured Cellulomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Lidao Town; Rongcheng; Weihai

ncbi_isolation_source: brown alga

ncbi_organism_name: Winogradskyella immobilis

ncbi_submitter: shandong university


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Germany

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- C24_bin-0223

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: BILS


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Utrecht University


ncbi_country: Spain: Madrid

ncbi_isolation_source: Broncho aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: Salmonella enterica CVM N46826 v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Enterococcus sp. UD-01

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ligilactobacillus animalis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer N sample 29 PSU in less than .8 micron size fraction

ncbi_submitter: Clemson University


ncbi_organism_name: Erwinia sp. P7711

ncbi_submitter: Masaryk University


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Leptospira kirschneri

ncbi_submitter: insititute for microbiology and immunology, faculty of medicine, univerza v ljubljani


ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Natronohydrobacter sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Shigella sp. FJ200714

ncbi_submitter: Fujian Medical University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: IHU Mediteranee Infection


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain

ncbi_isolation_source: urine

ncbi_submitter: University of Barcelona


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: South Korea

ncbi_isolation_source: algae and water

ncbi_organism_name: [Muricauda] lutisoli

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Chromobacterium amazonense

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Taiwan: Fushan; Yilan

ncbi_isolation_source: animal feces

ncbi_organism_name: Weissella muntiaci

ncbi_submitter: Food Industry Research and Development Institute


ncbi_isolation_source: Not known

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: IL

ncbi_isolation_source: Canned tomatoes

ncbi_organism_name: Brevibacillus porteri

ncbi_submitter: NCAUR-ARS-USDA


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA59

ncbi_submitter: Broad Institute


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: wound

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Italy

ncbi_organism_name: Brucella suis F9/06-1


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Bacillus sp. AG4(2022)

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AG4(2022)


ncbi_country: USA: Florida keys

ncbi_isolation_source: Unidentified ascidian from marine environment

ncbi_organism_name: Micromonospora sp. WMMA2032

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii


ncbi_organism_name: Proteus sp. fly-1067

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. fly-1067


ncbi_organism_name: uncultured Saccharofermentans sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Liechtenstein

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Shanghai Ocean University


gtdb_type_species_of_genus: t

ncbi_country: Japan

ncbi_organism_name: Rarobacter faecitabidus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Kitasatospora sp. NBC_01246

ncbi_submitter: Technical University of Denmark


ncbi_country: Indonesia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: Korean Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Acidovorax sp.

ncbi_submitter: Tsinghua University


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: USFDA


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: AAFC


ncbi_country: India


ncbi_country: South Korea

ncbi_isolation_source: sea water mixed with spring water; Jeju Island

ncbi_organism_name: Leisingera aquaemixtae

ncbi_strain_identifiers: CECT 8399

ncbi_submitter: UVEG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Czech Republic

ncbi_isolation_source: culture collection

ncbi_organism_name: Rhodospirillum rubrum

ncbi_strain_identifiers: DSM 467

ncbi_submitter: Brno University of Technology


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_isolation_source: blood from hospitalized preterm neonate

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Klebsiella sp. 129229

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus sp. HMSC035B04

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Tunisia

ncbi_isolation_source: seafood

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Weifang

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: metagenome

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_organism_name: Listeria monocytogenes SHL008

ncbi_submitter: University of Maryland, College Park


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Mexico: Navolato; Sinaloa

ncbi_isolation_source: Culiacan River; San Pedro

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: USA: NM

ncbi_isolation_source: mosquito gut; after a blood meal

ncbi_organism_name: Pseudomonas sp. Ag1

ncbi_submitter: New Mexico State University


ncbi_country: Denmark

ncbi_isolation_source: not known


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cepheid


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: New Zealand: Auckland

ncbi_submitter: Massey University


ncbi_country: USA: WI

ncbi_isolation_source: food dried chocolate organic shake

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Yersinia frederiksenii

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: human gut

ncbi_organism_name: Sutterella parvirubra

ncbi_submitter: EMG


ncbi_organism_name: Acetobacter pasteurianus NBRC 3188

ncbi_strain_identifiers: NBRC 3188

ncbi_submitter: Yamaguchi University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: France: Evreux

ncbi_isolation_source: scapula

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Rouen University


ncbi_country: Brazil: Minas Gerais; Ouro Branco

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: ICMP 5712

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Caldibacillus thermoamylovorans

ncbi_submitter: University of Chicago


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Germany

ncbi_isolation_source: ear swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Swansea University


ncbi_country: United Arab Emirates: Coast of the Arabian Gulf

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: NYUAD


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Colorado


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Prevotella denticola F0289

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: intestinal contents

ncbi_organism_name: Arthrobacter jinronghuae

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_country: Germany: Wietze

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: China: Wuhan

ncbi_isolation_source: frost damaged plant

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: Denmark: Odense

ncbi_isolation_source: nose swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Odense University Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Veillonella sp.


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Instituto de Quimica


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Bacteroides heparinolyticus


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Escherichia coli

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Citrobacter braakii

ncbi_strain_identifiers: DR 63-CEF

ncbi_submitter: CEITEC VETUNI


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: University of Hyderabad


ncbi_organism_name: Xanthobacter sp. V8C-5

ncbi_submitter: Harvard Medical School


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas sp. NPDC087612

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Serratia sp. CY75931

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY75931


ncbi_organism_name: uncultured Lyngbya sp.


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_submitter: Technical University of Munich


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Brevundimonas aurantiaca

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptomyces virginiae


ncbi_organism_name: Lacticaseibacillus jixianensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Clear Labs, Inc.


ncbi_country: China: Shanghai

ncbi_isolation_source: S2-enrichment culture from tap water-filter-nitrite

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Fudan University


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Vibrio parahaemolyticus TUMSAT_H10_S6

ncbi_submitter: Tokyo University of Marine Science and Technology


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Thermoclostridium caenicola

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: TX

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: gut

ncbi_organism_name: Catenibacterium sp.

ncbi_submitter: University of Queensland


ncbi_country: Russia: Solikamsk; Perm region

ncbi_isolation_source: potash mine tailings

ncbi_organism_name: Salinicola sp. MH3R3-1

ncbi_submitter: University of Southern Mississippi


ncbi_organism_name: Candidatus Midichloria mitochondrii

ncbi_submitter: National Institute of Public Health and Environment (RIVM)


ncbi_country: Hong Kong

ncbi_isolation_source: hospital

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio sp. 947

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Enterococcus sp. C63

ncbi_submitter: Northwest A & F University


ncbi_isolate: Pectobacterium versatile A96-S13-F16

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium versatile

ncbi_strain_identifiers: Pectobacterium versatile A96-S13-F16

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Portland State University


ncbi_country: Czech Republic: Pribram

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter sp. NIPH 284

ncbi_strain_identifiers: NIPH 284

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_isolation_source: ocular surface swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Blood from adult

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Paenibacillus sepulcri

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Puniceicoccaceae bacterium


ncbi_submitter: University of Sheffield


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Adlercreutzia sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris


ncbi_assembly_name: Rumen uncultured genome RUG14758

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-5965

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_country: USA: Michigan

ncbi_isolation_source: parasitized Rhagoletis pomonella larvae

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Symbiopectobacterium;x__unclassified Symbiopectobacterium;s__Candidatus Symbiopectobacterium sp. Dall1.0


ncbi_country: Brazil: Parana; Londrina

ncbi_submitter: Universidade Estadual de Londrina