ncbi_assembly_name: freshwater MAG --- G-1_bin-305

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: BILS


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rickettsia typhi

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: feces


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kasetsart University


ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Caecum


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Maricaulis sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: USA: GA

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark: Slagelse

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Region Zealand


ncbi_country: China: Tianjin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tianjin Medical University


ncbi_organism_name: Micromonospora sp. NPDC048169

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acetobacter peroxydans

ncbi_refseq_category: reference genome

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_level: Complete Genome

ncbi_country: Germany: near Munchenroda; Jena

ncbi_isolation_source: pine forrest soil between two spruce trees

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Malacoplasma sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa BWHPSA017

ncbi_submitter: Broad Institute


ncbi_country: Russia: Saratov

ncbi_organism_name: Escherichia coli

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Centre of Biotechnology of Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: respiratory secretions

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CDPH


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_submitter: BIOTEC


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus LAC

ncbi_strain_identifiers: LAC

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_assembly_level: Chromosome

ncbi_country: France

ncbi_isolate: Various

ncbi_isolation_source: Human

ncbi_strain_identifiers: Various

ncbi_submitter: IP

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum


ncbi_organism_name: Sagittula sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: IMG-taxon 2654587900 annotated assembly

ncbi_organism_name: Halobacillus alkaliphilus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia: Brisbane

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Rothia terrae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: Arkansas

ncbi_isolation_source: shrimp

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: Qatar

ncbi_isolation_source: fecal swab

ncbi_submitter: Qatar University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium RIFCSPHIGHO2_01_FULL_55_24


ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_country: Estonia

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Indian Ocean

ncbi_isolation_source: Sulfide

ncbi_organism_name: Seohaeicola saemankumensis

ncbi_submitter: Third Institute of Oceanography,National Oceanic Adminisstration


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- A3_bin-273

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 281

ncbi_submitter: SC


ncbi_country: Spain: Asturias

ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_country: China: Sichuan

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Patient 19;Isolate 01

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: CAU


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter cloacae


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_assembly_name: Salmonella enterica CVM N43820 v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Longicatena sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: tea

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Methylobacterium sp. NPDC097158

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Proteiniphilum sp. UBA5506

ncbi_submitter: University of Queensland


ncbi_country: Australia: Melbourne; Middle Park Beach

ncbi_isolation_source: beach sand

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Auckland


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Campylobacter coli JV20

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: uncultured Erysipelothrix sp.

ncbi_submitter: EMG


ncbi_organism_name: Salmonella sp. SJTUF15579

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudoalteromonas espejiana

ncbi_submitter: DinsdaleLab Sequences


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Microvirga sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Thalassospira profundimaris

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_submitter: National Health Research Institutes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Candidatus Methylomirabilales bacterium

ncbi_submitter: Monash University

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;x__unclassified Candidatus Methylomirabilales;s__Candidatus Methylomirabilales bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_organism_name: Trinickia sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Xinjiang Academy of Agriculture and Reclamation Science


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Hospital for Skin Diseases, Institute of Dermatology, Chinese Academy of Medical Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Cancer Hospital Chinese Academy of Medical Sciences, Shenzhen Center


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Brazil: Braganca

ncbi_submitter: LNCC


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: Universite Laval


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: Streptococcus intermedius B196

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus intermedius;x__Streptococcus intermedius B196


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: Cambridge; Massachusetts

ncbi_isolation_source: stool

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: UCSF


ncbi_organism_name: Kineosporiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: Intestinal shrimp

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Faculty of Science, Prince of Songkla University


ncbi_country: USA: Minnesota

ncbi_isolation_source: brain

ncbi_submitter: University of Saskatchewan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Chryseobacterium indologenes


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Acinetobacter sp. Leaf130

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Hawaii

ncbi_organism_name: Streptomyces sp. SID7909

ncbi_submitter: University of Wisconsin Madiso


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EBI


ncbi_country: USA

ncbi_isolation_source: Urine Clean Catch

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_submitter: University of Oxford


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Morocco: Marrakech

ncbi_isolation_source: municipal mesophilic anaerobic sewage sludge digester

ncbi_organism_name: Desulfobulbus oligotrophicus

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Hubei

ncbi_isolation_source: Rice wine Koji

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: USA: Washington State

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_strain_identifiers: MRSP 684

ncbi_submitter: Washington State University


ncbi_genome_representation: partial

ncbi_organism_name: Streptomyces venezuelae

ncbi_strain_identifiers: SvWT

ncbi_submitter: Shandong University


ncbi_country: South Africa: Western Cape

ncbi_isolation_source: Likely Sputum

ncbi_organism_name: Mycobacterium tuberculosis F11

ncbi_submitter: Broad Institute


ncbi_organism_name: Novipirellula sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Uganda: Bwera General Hospital

ncbi_submitter: Makerere University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__aphid secondary symbionts;g__Candidatus Williamhamiltonella;s__Candidatus Williamhamiltonella defendens


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Leibniz Institute for Natural Product Research and Infection Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Tongji University


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rennes Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: EMG


ncbi_country: China: the East China Sea

ncbi_isolation_source: enrichment culture inoculated with surface estuarine sediment

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Shanghai Jiao Tong University (SJTU)


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Providencia rustigianii

ncbi_submitter: University of Georgia


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_isolation_source: bronchial fluid

ncbi_organism_name: Mycobacterium tuberculosis 1821ADB38

ncbi_submitter: Vanderbilt University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Bullifex sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus suis YS104

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: uncultured Metamycoplasma sp.


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_country: China: Henan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolate: metabat2_coassembly_bwa.536 MAG

ncbi_organism_name: Candidatus Coproplasma avistercoris

ncbi_strain_identifiers: metabat2_coassembly_bwa.536 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;s__Candidatus Coproplasma avistercoris


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: Miguel Servet University Hospital


ncbi_country: Thailand: Ubon

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: The University of Texas at Dallas


ncbi_country: Germany: Goettingen

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae SK1902

ncbi_submitter: Read Laboratory, Emory University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: [Eubacterium] siraeum DSM 15702

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;s__[Eubacterium] siraeum;x__[Eubacterium] siraeum DSM 15702


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Christensenella sp. UBA3700

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Jiangsu Province Academy of Agricultural Sciences


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_assembly_name: IMG-taxon 2599185168 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFPP05

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guangzhou

ncbi_isolation_source: Banana leaf sheaths

ncbi_organism_name: Dickeya dadantii

ncbi_submitter: College of Plant Protection, South China Agricultural University


ncbi_isolation_source: freshwater

ncbi_organism_name: Anabaena sp. FACHB-1237

ncbi_submitter: South China Normal University


ncbi_organism_name: uncultured Salinivenus sp.


ncbi_organism_name: Collinsella sp. i05-0019-G5

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Onthoplasma faecigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: root

ncbi_organism_name: Bacillus sp. L381

ncbi_submitter: JINAN UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. L381


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: Tunisia: Tunis

ncbi_isolation_source: bovine milk 2

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cepheid


ncbi_country: Chile: Rengo

ncbi_isolation_source: Cankerous wood

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: INIA Rayentue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV2948

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2948


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: Freshwater

ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: Centre for Industrial Biotechnology Studies


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: skin and soft tissue

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: rotten onion

ncbi_organism_name: Corynebacterium glutamicum ATCC 14067

ncbi_submitter: South China University of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Department of Medical Microbiology and Parasitology,Shanghai Jiao Tong University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum;sb__Bifidobacterium longum subsp. longum;x__Bifidobacterium longum subsp. longum JDM301


ncbi_country: China: Jiangsu

ncbi_submitter: Yangzhou University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG10091

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile DA00154

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China:Yongchuan District;Chongqing

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter cloacae complex sp. ECL72

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. ECL72


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Lebanese American University


ncbi_country: Netherlands: Groesbeek

ncbi_isolation_source: wastewater treatment plant activated sludge

ncbi_organism_name: Candidatus Contendobacter sp.

ncbi_submitter: Radboud University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Contendibacter;x__unclassified Candidatus Contendobacter;s__Candidatus Contendobacter sp.


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 240

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_isolation_source: sediment

ncbi_organism_name: Cyanobacteria bacterium UBA9273

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA9273


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Xiamen University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Maunalua Bay; Oahu; Hawaii

ncbi_isolation_source: Sand flats

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Slovakia: Samorin

ncbi_isolation_source: mill for raw meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Seattle

ncbi_isolation_source: throat of cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: ZheJiang university


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: subsurface soil of Tianjin coal mine

ncbi_organism_name: Cellulomonas carbonis T26

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Italy: Gulf of Naples

ncbi_isolation_source: marine water

ncbi_organism_name: Maricaulaceae bacterium NA33B04

ncbi_submitter: CNRS


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: hydrothermal sediments

ncbi_organism_name: Aeribacillus kexueae

ncbi_submitter: Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: France: Caen

ncbi_isolation_source: Stools

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Normandy university


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Ontario; Scarborough

ncbi_isolation_source: meat

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hvittingfoss;x__Salmonella enterica subsp. enterica serovar Hvittingfoss str. SA20014981


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Vampirovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_country: USA: Canoe Beach; Nahant; MA

ncbi_isolation_source: Coastal ocean surface water

ncbi_organism_name: Pseudoalteromonas sp. 3D05

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 369


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_submitter: University of Sheffield


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Netherlands: Nijmegen

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Boston College


ncbi_isolate: clinical strain from anonymous patient of Limoges Hospital

ncbi_isolation_source: blood culture

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: INRA Toulouse


ncbi_organism_name: uncultured Iamiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Niger: Saga; Niamey

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Sydney

ncbi_organism_name: Escherichia coli

ncbi_submitter: OUTBREAK


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Portugal

ncbi_isolation_source: urine

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_country: Germany: Cologne

ncbi_organism_name: Ensifer sp. Root258

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Oceanicaulis sp.


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Caldithrix sp.

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Salmonella sp. SKLX107337

ncbi_submitter: Zhejiang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_strain_identifiers: NA 31

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Cyclobacterium xiamenense

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur de la Guadeloupe


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Municipal Center for Disease Control and Prevention


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Nocardioides daphniae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Limnochordia bacterium


ncbi_country: China: Sanya

ncbi_isolation_source: coral

ncbi_organism_name: bacterium SCSIO 12696

ncbi_strain_identifiers: SCSIO 12696

ncbi_submitter: South China Sea Institute of Oceanology

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__bacterium SCSIO 12696


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Myroides odoratus

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Tokyo

ncbi_isolation_source: blood

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__environmental samples;s__uncultured Candidatus Rokubacteria bacterium


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Salmonella sp. SKLX117463

ncbi_submitter: Zhejiang university


ncbi_organism_name: Anaeromassilibacillus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: nutrient broth

ncbi_organism_name: Mesorhizobium sp. INR15

ncbi_submitter: University of New South Wales


ncbi_submitter: Shanghai Institutes for Biological Sciences (SIBS) of Chinese Academy of Sciences (CAS)


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Aarhus University


ncbi_country: Ireland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: GA

ncbi_isolation_source: Environmental

ncbi_submitter: Florida Department of Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: Germany: Goettingen

ncbi_isolation_source: tomato rhizosphere

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: USA: CO

ncbi_isolation_source: milk bovine cow

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Hospital Muenster


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Gallionella sp.

ncbi_submitter: University of Waterloo


ncbi_country: Kenya

ncbi_isolation_source: milk

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil with plant cover day5_noCT

ncbi_submitter: Colorado State University


ncbi_country: Canada: Powell Lake South basin; British Columbia

ncbi_isolation_source: lake water

ncbi_organism_name: Streptomycetaceae bacterium

ncbi_submitter: Dalhousie University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Pedobacter cryoconitis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Jersey

ncbi_submitter: University of Bath


ncbi_organism_name: Candidatus Geothermincolales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Geothermincolia;o__Candidatus Geothermincolales;x__unclassified Candidatus Geothermincolales;s__Candidatus Geothermincolales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enteroscipio rubneri

ncbi_submitter: EMG


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Burkholderiales bacterium


ncbi_country: Taiwan

ncbi_isolation_source: mice feces

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: Chang Gung University


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Los Alamos National Lab


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Belgium

ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: Brachyspiraceae bacterium


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: Instituto Nacional de Salud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium GW2011_GWA2_37_7


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC052535

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: HN

ncbi_isolation_source: soil sample from arsenic pollution region

ncbi_organism_name: Sinorhizobium sp. GL28

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Mycolicibacterium elephantis DSM 44368

ncbi_submitter: Uppsala University


ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Christensenellaceae bacterium


gtdb_type_species_of_genus: t

ncbi_submitter: Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Fusobacteriati;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum;sb__Fusobacterium nucleatum subsp. nucleatum;x__Fusobacterium nucleatum subsp. nucleatum ATCC 25586


ncbi_country: USA: Conch Reef; Key Largo; Florida

ncbi_isolation_source: marine sponge

ncbi_organism_name: Brevibacterium sp. R8603A2

ncbi_submitter: Institute of Marine and Environmental Technology


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Qatar

ncbi_isolation_source: fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Qatar University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Methylobacterium fujisawaense

ncbi_submitter: The University of Chicago


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Wolbachia endosymbiont of Drosophila ananassae

ncbi_submitter: University of Maryland Baltimore


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China: Sichuan

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AGROSAVIA


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Cypionkella sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp. Marseille-P3684

ncbi_submitter: URMITE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Aequorivita sp. UBA3185

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Petrimonas sp.

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: Rhode Island

ncbi_isolate: I

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: D344RRF x C68;I

ncbi_submitter: brown University/Rhode Island Hospital


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Brocadiia bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;x__unclassified Candidatus Brocadiia;s__Candidatus Brocadiia bacterium


ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: USA: GA

ncbi_isolation_source: Chicken Wings

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: PTC fluid

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Philippines

ncbi_submitter: USAMD-AFRIMS


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: Parabacteroides gordonii


ncbi_organism_name: Streptomyces sp. NPDC006251

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_country: Singapore

ncbi_isolation_source: 30 degree sequencing batch reactor activited sludge day 315

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: Activated sludge

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Iraq: Baghdad

ncbi_isolation_source: ear swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Erciyes University


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus agalactiae LDS 628

ncbi_strain_identifiers: LDS 628

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylobacter sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: Single-strain biofilm on Detroit 562 cells

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Emory University


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: USA: South Dakota

ncbi_isolation_source: cecum

ncbi_organism_name: Bacteroidales bacterium SW292

ncbi_submitter: South Dakota State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium SW292


ncbi_country: France

ncbi_organism_name: Staphylococcus argensis

ncbi_submitter: INSERM U1047


ncbi_organism_name: Halopseudomonas sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Nebraska

ncbi_isolation_source: placenta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: United State Department of Agriculture


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Prevotella sp. CAG:474

ncbi_submitter: DTU


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Arcicella sp. LKC2W

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_strain_identifiers: ACAM 615

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Alteromonadales;f__Alteromonadaceae;g__Brumicola;s__Brumicola pallidula;x__Brumicola pallidula DSM 14239 = ACAM 615


ncbi_country: American Samoa

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Spirulina sp. SIO3F2

ncbi_submitter: UCSD


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_strain_identifiers: Salmonella enterica subsp. enterica serovar Typhi ZJ98-11

ncbi_submitter: Yuan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Portugal: Algarve

ncbi_isolation_source: Sea cave

ncbi_organism_name: Pseudoalteromonas sp. 2CM37A

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_organism_name: Candidatus Sedimenticola sp. 20ELBAFRAG

ncbi_submitter: University of Vienna


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada: British Columbia

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Copenhagen


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Tula region

ncbi_isolation_source: skin surface

ncbi_organism_name: Streptomyces sp. Lzd4kr

ncbi_submitter: IBPM RAS


ncbi_country: China: Guangdong

ncbi_organism_name: Mycoplasmopsis anatis

ncbi_submitter: WENS Foodstuff Group Co., Ltd. Rsearch Institute


ncbi_country: Russia: St.Petersburg

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: ARRIAM


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Christensenella sp.

ncbi_submitter: University of Iowa


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Mycobacteroides sp. H002

ncbi_submitter: US EPA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: EBI


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Tennessee;Knoxville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Exiguobacterium sp. UBA3144

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. UBA3144


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Aminobacterium sp. UBA4834


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Warsaw University of Life Sciences, Institute of Veterinary Medicine


ncbi_organism_name: Streptomyces sp. NPDC127197

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: Universidade Federal do Rio de Janeiro

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: uncultured Pirellulaceae bacterium


ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: San Diego State University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Sanya people's hospital


ncbi_organism_name: Streptomyces olivaceus


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Antwerp


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Yantai University


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: CSIR-National Environmental Engineering Research Institute (NEERI)


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 14d patty soil

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Peking university


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-1118

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: USA: White Oak Rive Estuary; North Carolina

ncbi_isolation_source: Sulfate-rich zone estuary sediments 8-12 cm

ncbi_organism_name: Myxococcales bacterium SG8_38

ncbi_submitter: University of Texas


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Fidelibacterota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: ECO 015

ncbi_submitter: Monash University


ncbi_country: China: Nanning

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Guangxi Academy of Sciences, China


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Lentimonas sp.

ncbi_submitter: Yantai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__Verrucomicrobiota incertae sedis;g__Lentimonas;x__unclassified Lentimonas;s__Lentimonas sp.


ncbi_country: Egypt

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Roseateles terrae

ncbi_strain_identifiers: CECT 7247

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Africa: Northwest of Grahamstown

ncbi_isolation_source: Farm Water Source

ncbi_organism_name: Enterococcus gallinarum

ncbi_strain_identifiers: Five

ncbi_submitter: University of Regina


ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Francisella opportunistica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium colombiense

ncbi_submitter: JCVI


ncbi_organism_name: Pseudomonas sp. SJZ080


ncbi_country: USA

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: USA: Pittsburgh

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China: Guangdong

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_name: Rumen uncultured genome RUG10068

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_assembly_name: IMG-taxon 2617270733 annotated assembly

ncbi_organism_name: Paracoccus alkenifer

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Alabama

ncbi_organism_name: Serratia marcescens

ncbi_submitter: KRIBB


ncbi_organism_name: Hydrogenophaga intermedia

ncbi_submitter: Biology Centre CAS


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_country: China

ncbi_isolation_source: anaerobic digsetion effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Roseibacillus sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: Germany: Magdeburg

ncbi_isolation_source: gastric antrum

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_submitter: Chinese National HGC, Shanghai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Lai;x__Leptospira interrogans serovar Lai str. 56601


ncbi_country: USA: Georgia

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. GAFFF1

ncbi_submitter: Emory University


ncbi_country: USA: Lake Erie

ncbi_organism_name: Hylemonella sp.

ncbi_submitter: University of Michigan


ncbi_assembly_name: Rumen uncultured genome RUG10517

ncbi_organism_name: uncultured Bacteroidota bacterium


ncbi_organism_name: Cronobacter sakazakii 696

ncbi_submitter: LifeTech


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 10519

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Belgium

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: GBBC 3229

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_organism_name: Bordetella pertussis B0558

ncbi_submitter: RIVM


ncbi_country: Brazil: Recife

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_isolation_source: lake water

ncbi_organism_name: Nostocaceae cyanobacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Peptococcaceae;g__Desulforamulus;s__Desulforamulus hydrothermalis;x__Desulforamulus hydrothermalis Lam5 = DSM 18033


ncbi_submitter: UNIMI


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Chile

ncbi_isolation_source: Penguin

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: Hong Kong: Chek Chau

ncbi_organism_name: Ruegeria sp. HKCCD7318

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Roseburia inulinivorans


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock bioreactor

ncbi_organism_name: Magnetospirillum sp. 64-120

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 81-176


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Romboutsia ilealis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: sepsis

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_isolation_source: clinical material

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_country: Japan

ncbi_isolation_source: Soil

ncbi_organism_name: Saccharococcus caldoxylosilyticus

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_country: France

ncbi_isolation_source: mediterranean seawater

ncbi_organism_name: Gammaproteobacteria bacterium MOLA455

ncbi_submitter: Observatoire Oceanologique de Banyuls-sur-Mer


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Eubacteriaceae bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Coprococcus sp.


ncbi_country: Denmark

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lejia lagoon

ncbi_isolation_source: bare soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium RIFCSPLOWO2_02_FULL_42_37


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ATCC

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: KAIST


ncbi_country: Spain: Asturias

ncbi_isolation_source: Cabrales Cheese

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: IPLA-CSIC


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Italy: Bresso; MI

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Motilimonas sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Alteromonadales;x__Alteromonadales genera incertae sedis;g__Motilimonas;x__unclassified Motilimonas;s__Motilimonas sp. 1_MG-2023


ncbi_organism_name: Lachnospira eligens


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Canada: Alberta

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eggerthellaceae bacterium


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: Guaymas Basin sediment: dive 4572 depth 12-15 cm; dive 4572 depth 0-3 cm; dive 4484 depth 3-4 cm; dive 4484 depth 0-1 cm

ncbi_organism_name: Thermoflexia bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides caccae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfococcaceae bacterium

ncbi_submitter: University of Bremen


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Public University of Navarra

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: sturter culture BOLGARI

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Turicimonas muris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Klebsiella michiganensis KCTC 1686

ncbi_strain_identifiers: KCTC 1686

ncbi_submitter: Macrogen Inc.


ncbi_country: Japan

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Toho university


ncbi_isolation_source: burned soil

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Jilin

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: blood culture

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_country: Colombia: Caldas

ncbi_isolation_source: Abdominal wall abscess

ncbi_submitter: International Center for Microbial Genomics - Universidad El Bosque


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Sphingomonas ginsenosidimutans

ncbi_submitter: Northeastern University


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: MS

ncbi_isolation_source: Clinical specimen

ncbi_organism_name: Staphylococcus aureus DAR3529

ncbi_submitter: Broad Institute


ncbi_organism_name: Thauera aminoaromatica

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Clostridioides difficile CD38

ncbi_submitter: Institute for Genome Sciences


ncbi_country: South Africa

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Institute of Environmental Science and Research (ESR)


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Colwellia sp.

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: National Kaohsiung Normal University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.121 MAG

ncbi_isolate: bin.121 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Polaribacter sp. SA4-10

ncbi_strain_identifiers: bin.121 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_organism_name: Roseibacillus sp.

ncbi_submitter: Dekas Lab, Stanford University