ncbi_country: Croatia: Zagreb

ncbi_isolation_source: breast milk

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: IGA Technology Services Srl


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_level: Complete Genome

ncbi_country: China

ncbi_isolation_source: Oyster

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: university of Shanghai for science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_assembly_name: Escherichia coli CVM N37059PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N37059PS

ncbi_submitter: FDA


gtdb_type_species_of_genus: t

ncbi_isolation_source: Water well

ncbi_organism_name: Budvicia aquatica

ncbi_submitter: SC

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Scaffold

ncbi_country: Russia: Samara

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1322

ncbi_submitter: Broad Institute


gtdb_representative: t

ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Acidovorax soli

ncbi_submitter: department of plant and microbial biology


ncbi_country: Netherlands

ncbi_isolation_source: Primary rapid sand filter

ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Radboud University


ncbi_country: Spain

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Leicester


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. AF39-11AT

ncbi_submitter: BGI


ncbi_isolation_source: sediment

ncbi_organism_name: Cyanobacteria bacterium UBA9226

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA9226


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-156


ncbi_country: China: Shanxi Province

ncbi_isolation_source: respiratory tract of healthy individual

ncbi_organism_name: Corynebacterium argentoratense

ncbi_submitter: Shanxi Medical University


ncbi_country: United Kingdom

ncbi_isolation_source: Homo sapiens

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Adjame


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Jiangxi Agricultural University


ncbi_organism_name: Campylobacter coli


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: mucosa of vagina [UBERON:0004983]

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: TNO


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Germany

ncbi_isolation_source: pig

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 30499

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Shandong

ncbi_isolation_source: fecal swabs from commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Croceicoccus esteveae

ncbi_refseq_category: reference genome

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Fibrobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: BAL

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Colombia

ncbi_isolation_source: Environment

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Antioquia


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: New Zealand: Christchurch

ncbi_submitter: University of Canterbury


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: India: Madhya Pradesh; Sehore; Padli

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Auribacterota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Auribacterota;x__unclassified Candidatus Auribacterota;s__Candidatus Auribacterota bacterium


ncbi_country: Jordan

ncbi_isolation_source: spice

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bradyrhizobium sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GenomeTrakr Project: Ohio Department of Agriculture | Animal Disease Diagnostic Laboratory


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Canaa dos Carajas

ncbi_isolation_source: water

ncbi_organism_name: Hydrotalea sp.


ncbi_isolate: Vpyg symbiont

ncbi_isolation_source: Vangueria pygmaea leaf

ncbi_organism_name: uncultured Paraburkholderia sp.

ncbi_strain_identifiers: Vpyg symbiont

ncbi_submitter: inrae toulouse


ncbi_organism_name: Bartonella sp. AP9QHHD

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Collinsella phocaeensis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Belgium

ncbi_isolation_source: MinION assembly G500 S15BD05371 (as-8)

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sciensano


ncbi_organism_name: Woeseia sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Hylemonella sp.

ncbi_submitter: University of Southern California


ncbi_country: Czech Republic

ncbi_isolation_source: surface water

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: China Agricultural University


ncbi_country: USA: Texas

ncbi_isolation_source: blood

ncbi_submitter: South American MRSA Consortium


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin69

ncbi_isolation_source: soil

ncbi_organism_name: bacterium

ncbi_strain_identifiers: MDV bin69

ncbi_submitter: Monash University


ncbi_submitter: University of Waterloo


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Environmental Microbiology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_organism_name: Streptomyces griseofuscus


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Dyella marensis

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Rhodococcus qingshengii


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_organism_name: Thiohalocapsa sp.

ncbi_submitter: Colorado State University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_organism_name: Salmonella sp. NW221

ncbi_submitter: Sichuan University


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Sulfurimonas sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Paeniclostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolate: SPRUCE 421

ncbi_organism_name: Methylocella sp.

ncbi_strain_identifiers: SPRUCE 421

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Dysosmobacter sp.


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_assembly_name: freshwater MAG --- AM3_bin-0274

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: uncultured Terracidiphilus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mariniblastus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Odoribacter splanchnicus


ncbi_organism_name: Lachnospiraceae bacterium HCP1S3_D4

ncbi_submitter: Quadram Institute Bioscience


ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_submitter: KAUST


ncbi_country: Canada: Lacombe

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: cold seep

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-2461

ncbi_isolation_source: lake water


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Guelph

ncbi_isolation_source: paw

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_isolation_source: Ground beef

ncbi_submitter: US Meat Animal Research Center


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_submitter: The Salmonella enterica serovar Arizonae Genome Sequencing Project

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 62:z4,z23:-


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudoalteromonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-188

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-188


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: University Claude Bernard Lyon 1


ncbi_country: South Africa: North West Province

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Agriculture research council


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Priestia megaterium NCT-2

ncbi_submitter: Shanghai Jiaotong University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Blautia producta

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Escherichia coli

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Cheng Kung University


ncbi_isolation_source: Advanced Water Purification Facility

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Colorado School of Mines


ncbi_isolation_source: Poultry water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_strain_identifiers: Gottschalk 13227

ncbi_submitter: The J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae;x__Streptococcus agalactiae str. Gottschalk 13227


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom: London

ncbi_isolation_source: 2-3 butanediol fermentation

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Imperial College London


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient10 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_submitter: University of Galway


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: gut


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan

ncbi_isolation_source: Brain-Heart-Infusion

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infectious Diseases, National Center for Global Health and Medicine


ncbi_organism_name: Salmonella enterica subsp. diarizonae

ncbi_submitter: U.S. Food and Drug Administration


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: South Korea: Busan

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Niallia sp. RD1

ncbi_submitter: Dong-A university


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_country: China: Ningxia

ncbi_isolation_source: chicken cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_submitter: EPFL


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes communis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: New Zealand: Christchurch

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-210

ncbi_submitter: JCVI


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: AOP35_01H_surf _bin _14

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP35_01H_surf _bin _14

ncbi_submitter: Genoscope


ncbi_organism_name: Micromonospora sp. NBRC 110038

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Enterobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Clavibacter cf. michiganensis LMG 26808

ncbi_submitter: Gent University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;g__Clavibacter;s__Clavibacter michiganensis;x__Clavibacter cf. michiganensis LMG 26808


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Rudjer Boskovic Institute


ncbi_organism_name: Yersinia pestis

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Toho University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R872;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: United Kingdom: Yatesbury House Farm; Avebury; Wilts; Wiltshire

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: Winogradskyella aquimaris

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Reading


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Mageeibacillus sp. UBA3708

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Nesterenkonia sandarakina

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Switzerland

ncbi_submitter: University of Bern


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Houston; TX

ncbi_isolation_source: vagina

ncbi_submitter: Seattle University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Beijing University of Chemical Technology


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: NY; Buffalo

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: University of Iowa


ncbi_country: Spain: Barcelona

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Escherichia coli M2

ncbi_submitter: Department of Pediatrics, Washington University School of Medicine


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Paenibacillus lautus NBRC 15380

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus lautus;x__Paenibacillus lautus NBRC 15380


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Roseovarius sp.

ncbi_submitter: McGill University


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Darwin; Northern Territory

ncbi_isolation_source: brain

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: BDP

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Filomicrobium sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: URMITE


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans M2A

ncbi_submitter: Cornell University


ncbi_organism_name: Nostoc sp. DedQUE07

ncbi_submitter: LANGEBIO


ncbi_country: Australia: WA; Badgingarra

ncbi_organism_name: Mesorhizobium sp. B2-4-15

ncbi_submitter: Curtin University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: China

ncbi_isolation_source: Neurology

ncbi_submitter: Guangzhou Medical University


ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: freshwater MAG --- Loc080925-4m_bin-0676

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Aerococcus christensenii

ncbi_submitter: EMG


ncbi_country: Mozambique

ncbi_organism_name: Mycobacteriaceae bacterium 1482268.1

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Nantong; Jiangsu province

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-00431

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-00431


ncbi_isolation_source: chicken gut

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0974

ncbi_organism_name: Synechococcus lacustris


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: fecal material

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Xinjiang

ncbi_isolation_source: Oil reservoir production water

ncbi_organism_name: Dietzia sp. B19

ncbi_submitter: Peking University


ncbi_organism_name: uncultured Halieaceae bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Pacific Ocean: Axial Seamount

ncbi_isolation_source: hydrothermal fluid

ncbi_organism_name: Desulfovulcanus ferrireducens

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Dialister sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Salmonella sp. SKLX116067

ncbi_submitter: Zhejiang university


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_assembly_name: Pantoea brenneri 3.5.1

ncbi_country: Russia: Agerze; Tatarstan

ncbi_isolation_source: soil

ncbi_organism_name: Pantoea sp. 3.5.1

ncbi_submitter: Kazan Federal University


ncbi_country: Antarctica: Kingfisher Pond

ncbi_organism_name: Pararhizobium antarcticum

ncbi_strain_identifiers: NAQVI 59

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong Province

ncbi_isolation_source: Physical

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Sun Yat-sen University


ncbi_country: Germany: Erlangen

ncbi_isolation_source: perianal skin [UBERON:0012336]

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Proteus sp. PR00224

ncbi_submitter: University of Pittsburgh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. PR00224


ncbi_assembly_level: Chromosome

ncbi_country: USA: DC

ncbi_isolation_source: Peripheral blood

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG424

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China

ncbi_isolation_source: seawater surrounding coral Acropora digitifera under normal condition

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0083R

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus anthracis str. Carbosap

ncbi_strain_identifiers: Carbosap

ncbi_submitter: Army Medical and Veterinary Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. Carbosap


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_isolation_source: patient

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: rectal

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium EnGen0046


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: France

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: KOlimastIR


ncbi_country: USA: Washington; Prosser; Irrigated Agricultural Research and Extension Center (IAREC)

ncbi_organism_name: Streptomyces sp. MSC1_001

ncbi_submitter: Pacific Northwest National Laboratory


ncbi_organism_name: Pseudomonas sp. RA_15y_Pfl2_54

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EBI


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: Australia: Western Australia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: United Kingdom: London

ncbi_isolation_source: Leathery lesion

ncbi_organism_name: Actinomyces oris

ncbi_submitter: King's College London


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacillus gobiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Arenicella sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: USDA


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: PPA


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chungnam national university


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pararhizobium sp. DWP3-4

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Nocardia sp. NPDC059246


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: KU Leuven


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Texas A&M University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_submitter: University of Alberta


ncbi_assembly_name: freshwater MAG --- Loclat_bin-20132

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Salmonella sp. NW673

ncbi_submitter: Sichuan University


ncbi_organism_name: Neolewinella sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Rhodoferax sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Qingdao Agricultural Universtiy


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_isolation_source: bioreactor

ncbi_organism_name: Anaerolineales bacterium UBA7227


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Dallas; TX

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Broad Institute


ncbi_organism_name: Coriobacteriaceae bacterium


ncbi_country: Australia: Melbourne

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Cryptosporangium minutisporangium

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_country: South Korea: Jeju-do

ncbi_isolation_source: soil

ncbi_organism_name: Sphingomonas edaphi

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_organism_name: Lawsonia intracellularis N343

ncbi_submitter: Moredun Research Institute


ncbi_organism_name: Cypionkella sp.

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: AAFC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada (AAFC)


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Thermaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.


ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Labilibaculum sp.

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Japan

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Roseitalea sp.

ncbi_submitter: China University of Geosciences


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Congzhengia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolate: Fergi

ncbi_isolation_source: Mouse faeces

ncbi_strain_identifiers: Fergi

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium tuberculosis XDR KZN 605

ncbi_strain_identifiers: XDR KZN 605

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis XDR KZN 605


ncbi_organism_name: uncultured Blautia sp.


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Melbourne


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Sil RS 31

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The University of Queensland


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum;x__Mycobacterium tuberculosis variant africanum MAL010074


ncbi_country: Greece

ncbi_isolation_source: water

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Porphyromonas levii

ncbi_submitter: University of Calgary


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Adelaide Hills; SA

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Candidatus Pelagibacter sp. Uisw_113

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. Uisw_113


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: Pus

ncbi_submitter: University of Dhaka


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Streptomyces californicus

ncbi_strain_identifiers: NRRL B-2895

ncbi_submitter: University of Illinois

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Carboxydothermus ferrireducens DSM 11255

ncbi_submitter: JGI


ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Treponema denticola

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: Canada: Alberta;Edmonton

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Xinjiang Uyghur Autonomous Region

ncbi_isolation_source: plant

ncbi_organism_name: Aeromicrobium phragmitis

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_country: Mali: Koulikoro

ncbi_isolation_source: stool sample

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_country: USA: VA

ncbi_isolation_source: creek water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Clostridium perfringens CPE str. F4969

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium perfringens;x__Clostridium perfringens CPE;x__Clostridium perfringens CPE str. F4969


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: Bladder urine

ncbi_submitter: Federal University of Rio Grande do Sul (UFRGS)


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Qingyuan People's Hospital


ncbi_country: Canada: BC

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Microcoleus sp. S28C3

ncbi_submitter: Palacky University Olomouc


ncbi_country: Germany

ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Enterococcus sp. FR202

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_country: China: Shanghai

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai JiaoTong University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Paraprevotella xylaniphila

ncbi_submitter: EMG


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Dorea longicatena

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA2502

ncbi_submitter: University of Queensland


ncbi_country: USA: PA

ncbi_isolation_source: feces (Odocoileus virginianus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: blood

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Salmonella sp. NW485

ncbi_submitter: Sichuan University


ncbi_country: Denmark

ncbi_isolation_source: chicken meat

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Java


ncbi_organism_name: Serratia nevei

ncbi_submitter: University of Georgia


ncbi_organism_name: Anoxybacteroides rupiense

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptococcus salivarius


ncbi_strain_identifiers: CRBIP 24.76

ncbi_submitter: Sycou

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus pasteurii;x__Lactobacillus pasteurii DSM 23907 = CRBIP 24.76


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Brazil

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Goucher College; Baltimore; Maryland

ncbi_isolation_source: skin mucus

ncbi_organism_name: Pseudomonas sp. 18.1.10

ncbi_submitter: Goucher College


ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: French Guiana: Kourou; Centre Spatial Guyanais

ncbi_isolation_source: ESA spacecraft assembly clean room

ncbi_organism_name: Corynebacterium glaucum

ncbi_submitter: Bielefeld University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Victoria

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: CSIRO


ncbi_organism_name: Bifidobacterium bifidum


ncbi_isolation_source: Soil

ncbi_organism_name: Pseudomonas sp. 1 R 17

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__unclassified Pseudomonas;s__Pseudomonas sp. 1 R 17


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Emory University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: Fairfax; VA

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Broad Institute


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_country: Kazakhstan: West-Kazakhstan

ncbi_isolation_source: tissue

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_assembly_name: freshwater MAG --- MJ110712A_bin-318

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: WA

ncbi_isolation_source: blood NOS

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002056


ncbi_assembly_name: freshwater MAG --- Umea3_bin-3780

ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Viet Nam

ncbi_isolation_source: muscle with lesion

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Faculty of Fisheries, Kasetsart University


ncbi_country: China: Shanghai City

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Taiwan

ncbi_organism_name: Pseudoteredinibacter isoporae

ncbi_submitter: Guangxi University


ncbi_country: Iran: Tehran

ncbi_isolation_source: stool

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Pasteur Institute of Iran


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Canada: Manitoba

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Spain: Ebro delta; Catalonia

ncbi_isolation_source: gill

ncbi_organism_name: Vibrio alfacsensis

ncbi_strain_identifiers: CAIM 1831

ncbi_submitter: CIAD, A.C.


ncbi_country: Senegal

ncbi_organism_name: Mesorhizobium plurifarium

ncbi_submitter: IRD


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Occiput Swab

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: New York City

ncbi_isolation_source: skin-nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus COAS6052

ncbi_submitter: Broad Institute


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Nevskia sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Marinomonas sp.


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus F74820


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Porcinotec Co., Ltd


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Bacteroidota bacterium


ncbi_organism_name: Streptomyces sp. NPDC058629

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Microbacterium sp. CH-015

ncbi_submitter: Centro Integral de Microscopia Electronica (CIME - UNT - CONICET)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SRCAMB


ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: University of Galway


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Salegentibacter chungangensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: University of verona


ncbi_organism_name: Enterococcus sp. DIV1537a

ncbi_submitter: Broad Institute


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Ha'il


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB241_527I9

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Fenollaria sporofastidiosus

ncbi_submitter: norwich medical school, university of east anglia, uk


ncbi_isolation_source: bioreactor

ncbi_organism_name: Arcobacter sp. UBA2431

ncbi_submitter: University of Queensland


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_assembly_name: Clostridium polynesiense str. MS1

ncbi_organism_name: Clostridium polynesiense

ncbi_submitter: ebi


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia metallica

ncbi_submitter: University of Michigan


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Polynucleobacter meluiroseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- Umea3p1_bin-0339

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Schlesneria sp.

ncbi_submitter: BILS


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Enterococcaceae bacterium


ncbi_isolation_source: spleen and reproductive organs

ncbi_organism_name: Brucella suis

ncbi_strain_identifiers: WS-Be-68;Biovar 2

ncbi_submitter: Vetsuisse Faculty Bern


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Tunisia

ncbi_isolation_source: Respiratory tract

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centre for genomic regulation (CRG)


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Arenicella sp. 4NH20-0111

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NITE)


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Opitutia bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Halalkalibacter oceani

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H3367

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hangzhou

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Mixta calida

ncbi_submitter: BGI


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Italy: Cesano Maderno; Monza e Brianza

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_assembly_name: IMG-taxon 2595698225 annotated assembly

ncbi_organism_name: Ohtaekwangia koreensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Streptomyces sp. NPDC050997

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine

ncbi_organism_name: Pseudohongiella sp.

ncbi_submitter: University of Queensland


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Stappia sp. 22II-S9-Z10

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: China: Jiangxi Province

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Yimella sp. cx-51

ncbi_submitter: China CDC


ncbi_organism_name: Yersinia pestis Angola

ncbi_strain_identifiers: Angola

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Pseudomonas sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium C497

ncbi_submitter: Washington University


ncbi_isolation_source: NHS Scotland

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_country: China: Shanghai

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Oceanospirillales bacterium TMED33

ncbi_submitter: University of Southern California


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolate: Rio ETE_ALG 3VII

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Candidatus Fokinia solitaria

ncbi_strain_identifiers: Rio ETE_ALG 3VII

ncbi_submitter: University of Milan

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Fokinia;s__Candidatus Fokinia solitaria


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: laboratory evolution

ncbi_organism_name: Escherichia coli

ncbi_submitter: Harvard University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Medical Center Goettingen


ncbi_country: China: Shandong

ncbi_isolation_source: Brain tissue of dead ducks

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020044193

ncbi_submitter: Broad Institute


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Rhizobium sp. AN67

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_submitter: National institutes of Food and Drug Control


ncbi_organism_name: Bradyrhizobium sp. S3.9.2


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: California Institute of Technology


ncbi_country: Russia

ncbi_isolation_source: boreal lake water

ncbi_organism_name: Lacipirellula parvula

ncbi_submitter: Laboratory of Genomics of Microorganisms and Metagenomics, Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The British University in Egypt


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: SponGES


ncbi_organism_name: Kluyvera cryocrescens

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: Australia: Perth

ncbi_isolation_source: Retail table eggs

ncbi_submitter: Murdoch University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Pharygitis

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Guangzhou

ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: The Second Clinical College, Guangzhou University of Chinese Medicine


ncbi_country: Sri Lanka: Peradeniya

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: South Korea:Sunchang

ncbi_isolation_source: Jelly

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Arthrobacter psychrochitiniphilus


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AGROSAVIA


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Pseudoflavonifractor sp. BIOML-A3

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Shenzhen

ncbi_organism_name: Dorea longicatena

ncbi_submitter: BGI


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: India: Chandigarh

ncbi_isolation_source: Stool

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbial Technology


ncbi_isolation_source: caecum

ncbi_organism_name: Anaerotignum lactatifermentans

ncbi_submitter: Veterinary Research Institute


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Selenomonadaceae bacterium


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_country: Brazil: Bahia

ncbi_isolation_source: Biofilm formed on glass slides submerged in a sewage for 72 hours

ncbi_organism_name: Leptospira levettii

ncbi_submitter: Federal University of Bahia


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Lachnospira eligens


ncbi_country: China: Qinghai

ncbi_isolation_source: river bed soil

ncbi_organism_name: Devosia sp. MC521

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JSS Academy of Higher Education & Research


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Spain: Bilbao

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: China: Shan Dong

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: jiangnan


ncbi_organism_name: Listeria cossartiae subsp. cayugensis

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cayugensis


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_isolation_source: marine sediment sample bbl-31

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Methylobacterium sp. Leaf465

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Gemmiger formicilis


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Clemson University


ncbi_country: France: Nantes

ncbi_isolation_source: skin and soft tissues infection

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: EA2656 GRAM


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Beijing

ncbi_isolation_source: sheep meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: Novosphingobium marinum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Lebanon

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LAU


ncbi_isolation_source: desert soil

ncbi_organism_name: Herbiconiux sp. SYSU D00978

ncbi_strain_identifiers: SYSU D00978

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: SRCAMB


ncbi_organism_name: Roseateles sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Hebei Academy of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_submitter: The University of Sydney


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Stenotrophomonas sp.


ncbi_country: USA: CA

ncbi_isolation_source: onion waste

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptomyces sp. SAT1

ncbi_submitter: Beijing Forestry University


ncbi_organism_name: Lachnospiraceae bacterium HCP1S3_C8

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_organism_name: Streptococcus suis YS85

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_submitter: University of California at Davis


ncbi_country: Germany: Rotenberg nearStuttgart

ncbi_isolation_source: soil

ncbi_organism_name: Dehalogenimonas etheniformans

ncbi_strain_identifiers: GP

ncbi_submitter: University of Tennessee, Knoxville


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_organism_name: Brucella suis VBI22

ncbi_submitter: Virginia Bioinformatics Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: HKUST


ncbi_organism_name: Sulfuriferula sp.

ncbi_submitter: EPFL


ncbi_isolation_source: stool

ncbi_organism_name: Achromobacter aegrifaciens

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Cameroon

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: DUCHAsp

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Germany

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Robert Koch Institut


ncbi_organism_name: Escherichia coli H591

ncbi_submitter: Broad Institute


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: Canada: Lacombe

ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: USA: MD

ncbi_isolation_source: musca domestica alimentary canal

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Psychromonas sp. MB-3u-54

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: uncultured Desulfobacula sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Corynebacterium casei

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Bariatricus sp. HCP28S3_B10

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Pokkaliibacter sp. CJK22405

ncbi_submitter: Xiamen University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LHUB-ULB


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Streptomyces sp. NPDC020880

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: [Kitasatospora] papulosa


ncbi_organism_name: Variibacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Amycolatopsis sp. NPDC001319