ncbi_country: USA: Atlanta

ncbi_isolation_source: Flood water

ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Czech Republic

ncbi_genome_representation: full

ncbi_isolation_source: strawberry

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: FDA/CFSAN


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Rhodanobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_assembly_name: F

ncbi_isolate: F

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: F

ncbi_submitter: DTU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Trichococcus flocculiformis

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Center for Microbial Communities


ncbi_country: Atlantic Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pelomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Quebec

ncbi_isolation_source: combination of 24 samples (8 from lake Croche; 8 from Montjoie and 8 from Simoncouche) collected from 2013 through 2014

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Joint Genome Institute


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_assembly_level: Chromosome

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Sciensano

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Portugal

ncbi_isolation_source: expectoration

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Max Rubner-Institut


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Muribaculum caecicola

ncbi_refseq_category: reference genome

ncbi_submitter: University of Toronto

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Candidatus Onthovivens sp.

ncbi_submitter: Liverpool School of Tropical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Onthovivens;x__unclassified Candidatus Onthovivens;s__Candidatus Onthovivens sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Michigan

ncbi_organism_name: Rhizobium sp. PvP014

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Australia: Goolwa; Lake Alexandrina

ncbi_isolation_source: freshwater

ncbi_organism_name: Nodularia spumigena CS-590/01A

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: cotton tampon

ncbi_submitter: University of Birmingham

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter radioresistens;x__Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: EPFL


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_country: Italy: Milano

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


gtdb_type_species_of_genus: t

ncbi_country: Netherlands: The Netherlands; Rotterdam; Dokhaven

ncbi_organism_name: Plasticicumulans acidivorans


ncbi_country: USA: South San Francisco

ncbi_isolation_source: soil from salt pond MetaG R2A_C_D2_MG under conditions of wetland restoration

ncbi_organism_name: Candidatus Palauibacterales bacterium

ncbi_submitter: Universidad de Alicante

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;x__unclassified Candidatus Palauibacterales;s__Candidatus Palauibacterales bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Arthrobacter sp.


ncbi_organism_name: Microcystis viridis FACHB-1342

ncbi_submitter: South China Normal University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Klebsiella sp. WP7-S18-CRE-03

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_assembly_name: freshwater MAG --- Loc090721-7m_bin-112

ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: BILS


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1292

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_isolation_source: excreted bodily substance

ncbi_organism_name: Staphylococcus aureus 12-03481


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Capnocytophaga sputigena


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lyngbya sp.

ncbi_submitter: CSIR-Centre for Cellular and Molecular Biology


ncbi_isolation_source: Cattle faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Escherichia sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Peru

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR5877


ncbi_organism_name: Collinsella bouchesdurhonensis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Pedobacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: ACVCM

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: Selenomonadaceae bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: France

ncbi_isolation_source: cheese rind

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: INRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_country: China: Shanghai

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Japan: Shizuoka Prefecture

ncbi_organism_name: Pseudomonas ficuserectae

ncbi_strain_identifiers: ICMP 7849

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas ficuserectae


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: USA: California

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter californiensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O145:NM;x__Escherichia coli O145:NM str. 2010C-3521


ncbi_assembly_name: Salmonella enterica CVM N29382-R v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Pork Chop

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ohio


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York; Riverdale

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Treponema sp.

ncbi_submitter: INRA


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Pakistan: Lahore

ncbi_isolation_source: plant root

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Forman Christian College


ncbi_country: Australia: Victoria

ncbi_isolation_source: bile

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Cheese

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-359-E06

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Black Sea sulfidic water cellulose enrichment

ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_isolate: AOP5_B1_surf _bin _13

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP5_B1_surf _bin _13

ncbi_submitter: Genoscope


ncbi_country: Thailand:Phang Nga Bay

ncbi_isolation_source: soil sample

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: University of Tuebingen


ncbi_country: Sweden: Norrkoeping

ncbi_isolation_source: Raw water

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Uppsala University


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0214R

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: blood

ncbi_submitter: University of West London


ncbi_country: Canada: Alberta

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_organism_name: Candidatus Competibacter sp.

ncbi_submitter: Technische Universiteit Delft

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;x__unclassified Candidatus Competibacter;s__Candidatus Competibacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Salmonella sp. 741265081_PST

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Nanyang Technological University


ncbi_isolate: SPRUCE 565

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 565

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: Water

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Ibadan, Nigeria


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: France: Riquewihr

ncbi_isolation_source: soil

ncbi_organism_name: Ectopseudomonas mendocina

ncbi_submitter: University of Malaya


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Toho University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: McGill University - Macdonald Campus


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cornell University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Delftia tsuruhatensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_submitter: Institute of Medical Sciences


ncbi_organism_name: Salmonella sp. SC43

ncbi_submitter: Sichuan University


ncbi_organism_name: Serratia sp. CY43514

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY43514


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Porphyrobacter sp.


ncbi_organism_name: Peptoniphilaceae bacterium SGI.137

ncbi_submitter: University of Manitoba


ncbi_organism_name: Pseudarthrobacter polychromogenes

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_isolate: AOP18_A2_surf _bin _15

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP18_A2_surf _bin _15

ncbi_submitter: Genoscope


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC058667

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Maryland


ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: national health research institutes


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: EPFL


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: Redwood City; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Macellibacteroides fermentans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: South Korea: Jeonnam Shinan

ncbi_isolation_source: seawater

ncbi_submitter: National Institute of Fisheries Science


ncbi_organism_name: Bacillus cereus


ncbi_organism_name: Parasynechococcus sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Nonomuraea sp. CA-218870

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: BGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Ruminococcus sp.


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of three-weeks old elephant

ncbi_organism_name: Dialister sp. UBA1703

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caecimuris


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Candidatus Proelusimicrobium volucris


ncbi_organism_name: Enterococcus sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. A-M2

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acutalibacter muris


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Hong Kong

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus C0637

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: the seqafrica consortium


ncbi_country: Ireland

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Roseobacteraceae bacterium


ncbi_country: USA: New York

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Enterobacteriaceae bacterium S5_ASV_15

ncbi_submitter: Washington University in St. Louis


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Ruminococcus sp.


ncbi_country: Australia: Melbourne

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: Russia: Lake Baikal

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Brazil

ncbi_organism_name: Providencia stuartii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_isolate: VTEC

ncbi_isolation_source: feces

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: maternal feces

ncbi_organism_name: Eggerthella sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Victivallales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Homo sapiens

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Adjame


ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Sichuang

ncbi_isolation_source: fish viscera

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus UCIM6076

ncbi_submitter: Broad Institute


ncbi_isolation_source: Caecum


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Tissue No. 1 Right HUMERAL MEMBRANE

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Aphodoplasma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Aphodoplasma;x__unclassified Candidatus Aphodoplasma;s__Candidatus Aphodoplasma sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Cloacibacillus sp.

ncbi_submitter: EMG


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: Germany: North Sea around Helgoland

ncbi_isolation_source: Seawater from the North Sea by Helgoland

ncbi_organism_name: Sulfitobacter indolifex

ncbi_submitter: Leibniz Institute DSMZ


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Beijing

ncbi_submitter: China Agricultural University


ncbi_country: China: Hubei

ncbi_isolation_source: Rice wine Koji

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: shaoxing people's hospital


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Kenya: JKUAT Farm; Juja

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Adiutrix sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Desulfarculia;o__Candidatus Adiutricales;f__Candidatus Adiutricaceae;g__Candidatus Adiutrix;x__unclassified Candidatus Adiutrix;s__Candidatus Adiutrix sp.


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Italy

ncbi_isolation_source: central venous catheter

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: China

ncbi_isolation_source: feces


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Nitrosomonadaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Aeromonas schubertii

ncbi_strain_identifiers: CECT 4240

ncbi_submitter: UCONNMISEQ


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_submitter: SC


ncbi_organism_name: Kocuria marina

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Neisseria uirgultaei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Robiginitalea sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Southern Ocean: Drake Passage

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Italy: Apulia; Bari

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bari "Aldo Moro", Bari, Italy


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 57

ncbi_strain_identifiers: CHS 57

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 57


ncbi_organism_name: Candidatus Scalinduaceae bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;x__unclassified Candidatus Scalinduaceae;s__Candidatus Scalinduaceae bacterium


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Dorea longicatena CAG:42

ncbi_submitter: DTU


ncbi_country: China: Shanghai

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Fudan University


ncbi_assembly_name: De novo assembly of KCRI isolate RDK05_518B

ncbi_isolation_source: wound swab sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: South Korea: Dokdo Island

ncbi_organism_name: Shewanella maritima

ncbi_submitter: National Marine Biodiversity Institute of Korea


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Opitutus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Corynebacterium argentoratense DSM 44202

ncbi_submitter: Bielefeld University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__candidate division WS6 bacterium RIFOXYC1_FULL_33_9


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria animaloris

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bradyrhizobium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: tip

ncbi_organism_name: Staphylococcus aureus M0749


ncbi_organism_name: Lysinibacillus sp. FSL K6-0057

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Lysinibacillus;x__unclassified Lysinibacillus;s__Lysinibacillus sp. FSL K6-0057


ncbi_assembly_name: IMG-taxon 2681812962 annotated assembly

ncbi_organism_name: Terribacillus aidingensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_country: USA

ncbi_organism_name: Escherichia coli O26:NM str. 2010C-4347

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:NM;x__Escherichia coli O26:NM str. 2010C-4347


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-I21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Comamonas aquatica

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Indian Ocean

ncbi_organism_name: Salipiger marinus

ncbi_submitter: Third Institute of Oceanography,National Oceanic Adminisstration


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Uruguay: Lavalleja

ncbi_isolation_source: lymph nodes

ncbi_submitter: Institut Pasteur de Montevideo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Micromonospora ureilytica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pullichristensenella;s__Candidatus Pullichristensenella excrementipullorum


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: [Actinobacillus] rossii

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;x__Pasteurellaceae incertae sedis;x__[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex;s__[Actinobacillus] rossii


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_organism_name: uncultured Kiritimatiellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_country: Switzerland

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: EBI


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Cyclobacterium marinum


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: China Agricultural University


ncbi_country: Mexico: Cuatro Cienegas

ncbi_organism_name: Streptomyces sp. CC224E

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_country: Afghanistan

ncbi_isolation_source: Tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Brevifollis sp.


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_country: Portugal: at [115]; diving spot near Leixes Harbour

ncbi_isolation_source: subtidal sample; epilithic (6 m depth); near the south quay of the Leixes harbour

ncbi_organism_name: cf. Phormidesmis sp. LEGE 11477

ncbi_submitter: CIIMAR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Phormidesmis;x__unclassified Phormidesmis;s__cf. Phormidesmis sp. LEGE 11477


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: burned soil

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Australia: Warburton; Victoria

ncbi_isolation_source: Rural River

ncbi_organism_name: Campylobacter volucris

ncbi_submitter: Monash University


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 1513

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: China

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Rhopobota naevana


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Streptomyces lavendulae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Streptomyces diastaticus


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;x__unclassified Rickettsiales;s__Rickettsiales endosymbiont of Leucozona glaucia


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: uncultured Maribacter sp.


ncbi_isolate: AOP15_D2_surf _bin _1

ncbi_organism_name: Pseudomonas helleri

ncbi_strain_identifiers: AOP15_D2_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Southampton


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_submitter: University of Galway


ncbi_organism_name: Enterococcus sp. DIV0072

ncbi_submitter: Broad Institute


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_4 depth 0-3 cm

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: rabbit gut


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Marinovum sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Alphaproteobacteria bacterium UBA6477

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: Canada: Pitt River; British Columbia

ncbi_isolation_source: lichen surface

ncbi_organism_name: Streptomyces uncialis

ncbi_submitter: The Scripps Research Institute


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: China: Shandong

ncbi_strain_identifiers: LCL

ncbi_submitter: liaocheng university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Abortusequi


ncbi_country: Hong Kong: Chek Chau

ncbi_organism_name: Roseobacter sp. HKCCD7371

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Muribaculaceae bacterium


ncbi_assembly_name: IMG-taxon 2711768653 annotated assembly

ncbi_organism_name: Caballeronia arationis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Peru: Lima

ncbi_isolation_source: mining drainage

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterobacter sp. 237C8

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: EPFL


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: sepsis

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: University of Chicago


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Wenzhou

ncbi_isolation_source: soil

ncbi_organism_name: Lysinibacillus sp. A4

ncbi_submitter: Wenzhou University


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Gaiellaceae bacterium


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Blautia sp.


ncbi_country: Morocco: Merzouga

ncbi_isolation_source: desert sand

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: MedBiotech laboratory, faculty of medicine and pharmacy, rabat/ Mohamed V university rabat


ncbi_isolation_source: clinical isolation of a TTP patient with HIV infection

ncbi_strain_identifiers: ZJUJY

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: freshwater MAG --- MJ110516B_bin-1057

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Prevotella sp. CAG:891

ncbi_submitter: DTU


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_organism_name: Flavobacterium sp. UBA5153

ncbi_submitter: University of Queensland


ncbi_country: China: Qingfeng

ncbi_isolation_source: bark

ncbi_organism_name: Acinetobacter qingfengensis

ncbi_strain_identifiers: CCUG 69710T

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Sphingobacterium multivorum

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Belgium

ncbi_isolation_source: milk sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ANIWHA


ncbi_organism_name: uncultured Roseburia sp.


ncbi_isolation_source: fermented fish

ncbi_organism_name: Weissella thailandensis

ncbi_strain_identifiers: KCTC 3751

ncbi_submitter: ChunLab


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Hydrogenophilales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Singapore: Clementi Park

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Intestinibacillus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Yantai University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Rothia sp.


ncbi_country: Denmark: Hovedstaden;Copenhagen

ncbi_isolation_source: Proficiency Panel Isolate

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Sweden: Orebro

ncbi_isolation_source: orthopedic joint implant

ncbi_organism_name: Finegoldia magna

ncbi_submitter: Aarhus University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: burned soil

ncbi_organism_name: Caulobacter sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: caecum

ncbi_organism_name: Megasphaera sp. An286

ncbi_submitter: Veterinary Research Institute


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: National Centre of Microbiology


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Qingdao

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shandong University


ncbi_organism_name: Candidatus Avelusimicrobium faecicola

ncbi_submitter: AAFC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Faecalibaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: Ngtc RS 9

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Pseudomonas syringae pv. tomato T1

ncbi_submitter: The Sainsbury Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato;x__Pseudomonas syringae pv. tomato T1


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Czech Republic: Krivoklatsko forestland

ncbi_isolation_source: mud from a seasonal creek

ncbi_organism_name: Acinetobacter sp. ANC 4654

ncbi_submitter: National Institute of Public Health


ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Panama: Pacific Ocean

ncbi_isolation_source: wood

ncbi_organism_name: Loktanella sp. S4079

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Candidatus Ratteibacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Ratteibacteria;x__unclassified Candidatus Ratteibacteria;s__Candidatus Ratteibacteria bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Acidaminococcus timonensis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: Japan:Chiba; Kashiwa; Lake Teganuma

ncbi_isolation_source: lake surface water

ncbi_organism_name: Limnohabitans sp. TEGF004

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0987

ncbi_submitter: Broad Institute


ncbi_submitter: UNIMI


ncbi_country: South Korea: Gapcheon

ncbi_isolation_source: Environmental water sample

ncbi_organism_name: Pseudarcicella sp. GAP-15

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: China: Hangzhou

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Yersinia mollaretii

ncbi_submitter: SRCAMB


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Xanthomonas sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Brevibacterium permense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: intestine from infant

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: UMass Amherst


ncbi_organism_name: Metabacillus fastidiosus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-B03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Institute of Environmental Science and Research


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: China:Guangxi province;Liuzhou city

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: South china agriculture university


ncbi_country: Laos

ncbi_isolation_source: chicken meat

ncbi_submitter: University of Bern


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: USA: Pittsburgh; Pennsylvania Magee Womens Hospital

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Flavobacterium johnsoniae

ncbi_submitter: Banfield Lab


ncbi_country: USA: Houston; Texas

ncbi_isolation_source: laboratory generated strain

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: CARMiG (Center for Antimicrobial Resistance and Microbial Genomics)


ncbi_country: Chile: OHiggins Region

ncbi_isolation_source: tomato with bacterial canker symptoms at La Sagrada Familia

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Huzhou CDC


ncbi_country: USA: Bokeelia Pier; Pine Island; FL

ncbi_isolation_source: Gill tissue

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Stewartia floridana


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Tenacibaculum sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: Brevundimonas kwangchunensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: JJYY

ncbi_submitter: Hubei Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Curtobacterium sp. WHRI 8282

ncbi_strain_identifiers: WHRI 8282

ncbi_submitter: University of Exeter


ncbi_country: Mexico

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNAM


ncbi_isolation_source: poulrty - laying hens

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: Atlantic Ocean

ncbi_isolation_source: pentadecane enrichment inoculated with seawater

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Califronia


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sandaracinum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Processed meat patties

ncbi_submitter: University of Johannesburg


ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: USA: Washington; Richmond Mine C75

ncbi_isolation_source: biofilm

ncbi_organism_name: Leptospirillum ferriphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Belgium

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus thuringiensis

ncbi_strain_identifiers: delfin

ncbi_submitter: Aarhus University


ncbi_country: USA

ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Campylobacter sp. RM12647

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Alaska; Fairbanks

ncbi_organism_name: Pseudomonas sp. TH41

ncbi_submitter: University of Alaska Fairbanks


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Vienna


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_country: India: Rajakkamangalam; Kanyakumari

ncbi_isolation_source: Fermented rice

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: King Saud University


ncbi_country: China: Qinhai

ncbi_organism_name: Vibrio qinghaiensis

ncbi_submitter: South China Botanical Garden, Chinese Academy of Sciences


ncbi_country: Iran

ncbi_organism_name: Spiroplasma citri

ncbi_submitter: shiraz university


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli T1282_01

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Russia: Cheboksary

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_country: United Kingdom: London

ncbi_isolation_source: Subgingival plaque

ncbi_organism_name: Prevotella intermedia

ncbi_submitter: University of Leicester


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Christensenella hongkongensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: India

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington State University


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Emory University School of Medicine


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Candidatus Thioglobus autotrophicus

ncbi_submitter: SCOPE

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;s__Candidatus Thioglobus autotrophicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;s__Candidatus Thioglobus autotrophicus


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0092

ncbi_submitter: Broad Institute


ncbi_organism_name: Brucella intermedia

ncbi_submitter: SC


ncbi_organism_name: uncultured Amnibacterium sp.

ncbi_submitter: Spribille Lab


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Guangzhou

ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: The Second Clinical College, Guangzhou University of Chinese Medicine


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Zipacnadia bacterium

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;c__Candidatus Zipacnadia;x__unclassified Candidatus Zipacnadia;s__Candidatus Zipacnadia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Chishui River; Guizhou Province

ncbi_isolation_source: freshwater

ncbi_organism_name: Flavobacterium sp. GSA192

ncbi_submitter: Beijing University of Chemical Technology


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus IS-111


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Prevotellaceae bacterium


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Streptomyces sp. NBC_00073

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Saccharofermentans sp.


ncbi_organism_name: Micromonospora chersina


ncbi_organism_name: Bacillus cereus group sp. MYBK132-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK132-1


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Lunds Universitet


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Chile: Maria Elena; Atacama

ncbi_isolation_source: desert soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The Atacama Project


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin55

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_strain_identifiers: MDV bin55

ncbi_submitter: Monash University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: University of California Davis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Ca. E. baccata DD2

ncbi_isolate: Candidatus Entotheonella baccata DD2

ncbi_organism_name: Candidatus Entotheonella sp. DD2

ncbi_strain_identifiers: Candidatus Entotheonella baccata DD2

ncbi_submitter: Eidgenoessische Technische Hochschule Zuerich

ncbi_taxonomy: d__Bacteria;p__Candidatus Tectimicrobiota;c__Candidatus Entotheonellia;o__Candidatus Entotheonellales;f__Candidatus Entotheonellaceae;g__Candidatus Entotheonella;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Candidatus Tectimicrobiota;c__Candidatus Entotheonellia;o__Candidatus Entotheonellales;f__Candidatus Entotheonellaceae;g__Candidatus Entotheonella;x__unclassified Candidatus Entotheonella;s__Candidatus Entotheonella sp. DD2


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: anaerobic digester metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Jiangxi; ChengMenShan


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Clemson University


ncbi_country: Russia: Kazan; Tatarstan; local market

ncbi_isolation_source: sauerkraut

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: kazan federal university


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Alberta


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Germany: Wernigerode

ncbi_isolation_source: laboratory

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Micromonospora zamorensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Beijing

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China: Jiangsu

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Yangzhou University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: LNCC


ncbi_country: Switzerland

ncbi_isolation_source: chicken cecum

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: ETH Zurich


ncbi_country: USA

ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides fragilis str. 3725 D9 ii

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. 3725 D9 ii


ncbi_country: China: Henan Province

ncbi_isolation_source: animal feces

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Yangzhou


ncbi_organism_name: Nevskiaceae bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: South Korea: Seoul

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Coprobacillaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Toronto

ncbi_isolation_source: Raw Milk

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Candidatus Faecicola pullistercoris

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Faecicola;s__Candidatus Faecicola pullistercoris


ncbi_organism_name: Syntrophorhabdus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG14301

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water spring sample 20 PSU in less than .8 micron size fraction

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Rhodococcus baikonurensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridioides difficile P77

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Moline; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Peru

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_country: New Zealand: South Island; Marlborough; Capsize Point

ncbi_isolation_source: marine sponge

ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: VICTORIA UNIVERSITY WELLINGTON


ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_isolation_source: STP sludge

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EBI


ncbi_country: China

ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Nitrospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: skin

ncbi_organism_name: Microbacterium sp. ACRRU

ncbi_strain_identifiers: ACRRU

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Loyola University Chicago


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lactobacillaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: DOE JGI


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: mid-vaginal wall

ncbi_organism_name: Veillonellaceae bacterium M2-8

ncbi_submitter: Virginia Commonwealth University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of East Anglia


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Thomasclavelia sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: France: Savoie region; French Alps

ncbi_organism_name: Mycoplasma feriruminatoris

ncbi_submitter: INRA Univ Bordeaux


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_country: Mongolia: Bayan-Ulgij aimag; Sagsai sum

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague institute "Microbe"


ncbi_country: China:Zhejiang Province

ncbi_isolation_source: sputum

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Pharygitis

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: California; Davis

ncbi_isolation_source: Kombucha

ncbi_organism_name: Bacillus sp. KbaL1

ncbi_submitter: UCDavis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. KbaL1


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Leptospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Campinas

ncbi_organism_name: Pseudomonas sp. MN1F

ncbi_submitter: UNICAMP


ncbi_country: USA

ncbi_isolation_source: groin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Australia

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Ahrensia sp.


ncbi_country: China: Weihai

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodobacteraceae bacterium WD3A24

ncbi_submitter: Shandong University in Weihai


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Guangdong

ncbi_isolation_source: kefir grains

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: South China Agricultural University


ncbi_country: Jersey

ncbi_organism_name: Staphylococcus simiae

ncbi_submitter: University of Bath


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Longicatena sp. 210702-DFI.1.196

ncbi_submitter: University of Chicago


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Streptococcus agalactiae SS1218

ncbi_submitter: IP


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Naval Medical Research Center


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea:Jeollabuk-do; Gimje-si

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: China: Ordos

ncbi_isolation_source: soil

ncbi_organism_name: Aliidiomarina soli

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: USA: Apopka Florida

ncbi_isolation_source: subaerial and terrestrial within greenhouses

ncbi_organism_name: Iningainema tapete BLCC-T55

ncbi_submitter: University of Florida


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: United Kingdom: Edinburgh

ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_country: USA: California; Eel River; Cedar Creek

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Oscillatoriales cyanobacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Stutzerimonas balearica


ncbi_organism_name: Amycolatopsis sp. cg13

ncbi_submitter: hunankejidaxue


ncbi_isolation_source: ballast tank

ncbi_organism_name: Oceanococcus sp.

ncbi_submitter: Shandong university