ncbi_organism_name: Achromobacter sp. Marseille-Q4962

ncbi_submitter: IHU - Mediterranee Infection


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: Poland: Warsaw

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Aeromonas sp. ARM81

ncbi_submitter: University of Warsaw, Faculty of Biology


gtdb_representative: t

ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: China: Junggar Basin; Xinjiang

ncbi_organism_name: Yersinia pestis 2501

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 2501


ncbi_country: Norway: Troms

ncbi_isolation_source: eye

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_organism_name: Planktomarina temperata

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Yonsei University


ncbi_country: China: Tibet; Daggyai hot spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Candidatus Solincola daggyaiensis

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Candidatus Geothermincolia;o__Candidatus Geothermincolales;f__Candidatus Geothermincolaceae;g__Candidatus Solincola;s__Candidatus Solincola daggyaiensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Geothermincolia;o__Candidatus Geothermincolales;f__Candidatus Geothermincolaceae;g__Candidatus Solincola;s__Candidatus Solincola daggyaiensis


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Catenibacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: SampleC

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nocardia puris NBRC 108233

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Nocardia;s__Nocardia puris;x__Nocardia puris NBRC 108233

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Chromosome

ncbi_country: Thailand: Nakhon Sawan

ncbi_isolation_source: food

ncbi_organism_name: Enterobacter chuandaensis

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_assembly_level: Complete Genome

ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Pseudooceanicola sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Brevundimonas diminuta


ncbi_organism_name: uncultured Algimonas sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: University of Pittsburgh


ncbi_assembly_name: IMG-taxon 2617270914 annotated assembly

ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Campylobacter sp. 1

ncbi_submitter: University of California at Davis


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA:New York; EastHarlem

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Germany

ncbi_isolation_source: hatchery swab

ncbi_submitter: Robert Koch Institute


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Anode biofilm

ncbi_organism_name: Dysgonomonas sp. UBA7698

ncbi_submitter: University of Queensland


ncbi_organism_name: Flavobacterium circumlabens

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Anaerococcus sp.

ncbi_submitter: EMG


ncbi_country: USA: Illinois

ncbi_strain_identifiers: MN 50

ncbi_submitter: USDA-ARS


ncbi_country: Nicaragua: Managua

ncbi_isolation_source: antrum; stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Aquimarina sp. EL_43


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium RIFOXYB2_FULL_38_10


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Argentina

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR5868

ncbi_submitter: Broad Institute


ncbi_isolation_source: honey

ncbi_organism_name: Cohnella xylanilytica

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_country: USA: Seattle

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: lake water

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Adhaeribacter terrigena

ncbi_submitter: Kyungpook National University


ncbi_country: USA

ncbi_isolation_source: spacecraft surface

ncbi_organism_name: Sporosarcina aquimarina

ncbi_strain_identifiers: MER 20

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


gtdb_type_species_of_genus: t

ncbi_organism_name: Parvularcula bermudensis HTCC2503

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: animal; clinical

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Tennessee


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_submitter: Washington University


ncbi_country: China: Anhui

ncbi_isolation_source: Intestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Dialister sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom: Scotland; Queen Elizabeth University Hospital Glasgow

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Aberdeen


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Xiamen University


ncbi_country: Paraguay: Villeta

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_assembly_name: IMG-taxon 2651870305 annotated assembly

ncbi_organism_name: Stenotrophomonas indicatrix

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Mitsuokella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_organism_name: Draconibacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Denmark: Slagelse

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Region Zealand


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: USA: NY

ncbi_isolation_source: intestine (Canis lupus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_organism_name: Anabaena sp. PCC 7938

ncbi_submitter: South Dakota State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Anabaena;x__unclassified Anabaena;s__Anabaena sp. PCC 7938


ncbi_country: France: Normandy

ncbi_isolation_source: necropsy

ncbi_submitter: LABEO


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_country: USA: Texas

ncbi_isolation_source: field isolate

ncbi_organism_name: Brucella abortus 89-0363

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Campylobacter coli

ncbi_submitter: dtu national food institute


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Universidad Austral de Chile


ncbi_assembly_name: Rumen uncultured genome RUG13237

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Sichuan

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: West China hospital of Sichuan university


ncbi_assembly_name: Rumen uncultured genome RUG11430

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Israel

ncbi_isolation_source: soil

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Balearic Islands


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Klebsiella sp. GG_Kp176

ncbi_submitter: Max Rubner-Institut


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Monash University


ncbi_country: Spain

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: Argentina

ncbi_isolation_source: cheese

ncbi_organism_name: Enterococcus durans

ncbi_submitter: IBR


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1839R

ncbi_submitter: Broad Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Olsenella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Undibacterium sp. SXout20W

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC059761

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Yan an university


ncbi_organism_name: Amaricoccus sp.

ncbi_submitter: University of Fribourg


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NBC_00080

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Enterocloster clostridioformis


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Synergistota bacterium

ncbi_submitter: University of British Columbia


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut


ncbi_isolation_source: Bulgur

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Kenya

ncbi_organism_name: Brucella abortus 63/294

ncbi_submitter: Broad Institute


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter sp. 'aerobic (ED)'

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: North Dakota

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Goat raw milk Rocamadour

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Brigham Young University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Ruegeria pomeroyi

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolate: AOP43_B1_surf _bin _5

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: AOP43_B1_surf _bin _5

ncbi_submitter: Genoscope


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Flavobacterium ranwuense

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: New Zealand

ncbi_organism_name: Leptospira interrogans serovar Pomona

ncbi_submitter: Massey University


ncbi_organism_name: Burkholderia cepacia

ncbi_strain_identifiers: BCTT

ncbi_submitter: The University of the West Indies


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Texas Tech University


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_submitter: Intermountain Healthcare


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Chicken litter

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Variovorax paradoxus


ncbi_organism_name: Faecalibacillus sp.


ncbi_country: Sweden

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Menzies School of Health Research


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Malaysia: Sabah

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Universiti Malaysia Sabah


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Agromyces sp. G08B096

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: EMG


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8803

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W31947

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Australia: Hobart

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA3268


ncbi_organism_name: Luteolibacter yonseiensis

ncbi_submitter: Shandong university


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Nocardia sp. NPDC052254

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_country: China: Yunnan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV195

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Michigan

ncbi_isolation_source: University of Michigan Health System

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Michigan


ncbi_organism_name: Morganella morganii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acidaminobacteraceae bacterium


ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: Pacific Ocean: Hydrate Ridge North

ncbi_isolation_source: sample #5133; Elevator 3A push core 47; collected at Hydrate Ridge North during Jason II dive J2-593 from an area of active seepage marked by bubble ebullition and surface expression of white microbial mat

ncbi_organism_name: Desulfobulbaceae bacterium S5133MH15

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5382

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5382


ncbi_organism_name: Bifidobacterium crudilactis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Nonomuraea sp. NPDC049152

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Zhejiang Provinc

ncbi_isolation_source: blood

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Zhejiang Province Center for Disease Control and Prevention


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Dermacoccus nishinomiyaensis


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Yersinia pestis PY-95

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B187;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: coastal sediment

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-1696

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_assembly_name: Rumen uncultured genome RUG12506

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hangzhou First People's Hospital


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Gansu Provincial People's Hospital


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Rhizobium sp. CFBP 8762

ncbi_submitter: INRAE


ncbi_organism_name: Enterocloster aldenensis


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: Colon biopsy

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_submitter: Graduate School of Life and Environmental Sciences, Osaka Prefecture University


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong

ncbi_isolation_source: air medium

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Russia

ncbi_isolation_source: not known


ncbi_country: China: Hainan

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12137


ncbi_isolation_source: blood and spinal fluid

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Chiba University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: EMG


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Pedobacter sp.

ncbi_submitter: Colorado State University


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Croceivirga lutea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: India: Vellore

ncbi_organism_name: Shigella sp. FC1708

ncbi_submitter: Christian Medical College


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Serratia marcescens


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA1523

ncbi_submitter: University of Queensland


ncbi_country: Indonesia

ncbi_isolation_source: yoghurt

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 1056

ncbi_submitter: Brigham Young University


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Fastidiosipila sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: unknown

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: UNIVERSITY OF JENA


ncbi_organism_name: Mesorhizobium sp. M0848

ncbi_submitter: Washington State University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Defluviicoccus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Dalian Polytechnic University


ncbi_organism_name: Brucella ceti TE28753-12


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_isolation_source: saline alkaline soil

ncbi_organism_name: Oceanobacillus alkalisoli

ncbi_submitter: Institute of Soil Fertilizer and Environment Resources


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Beijing

ncbi_isolation_source: rhizosphere soil of Celery

ncbi_organism_name: Paenibacillus apii

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Flammeovirgaceae bacterium UBA2786

ncbi_submitter: University of Queensland


ncbi_organism_name: Sphaerospermopsis kisseleviana

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Australian Institute of Marine Science

ncbi_isolation_source: seawater

ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Neisseria sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EBI


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA:Florida; Florida Keys

ncbi_organism_name: Micromonospora sp. WMMD1076

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Nebraska

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Washington University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Psychrobacillus psychrotolerans

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_country: China: Fuzhou

ncbi_isolation_source: deli meat samples

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- AM_bin-0220

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: South Africa: Finsch mine in Finsch district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Candidatus Aquidulcis sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;g__Candidatus Aquidulcis;x__unclassified Candidatus Aquidulcis;s__Candidatus Aquidulcis sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: wildlife

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Andres Bello


ncbi_submitter: Translational Health Science and Technology Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada

ncbi_organism_name: Helicobacter pylori R055a

ncbi_submitter: IGS


ncbi_submitter: University of Iowa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;x__unclassified Candidatus Polarisedimenticolia;s__Candidatus Polarisedimenticolia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Queensland

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Wyoming


ncbi_organism_name: Candidatus Kuenenia sp.

ncbi_submitter: EPFL

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__unclassified Candidatus Kuenenia;s__Candidatus Kuenenia sp.


ncbi_organism_name: [Ruminococcus] lactaris


ncbi_submitter: Labbmm Biomol Group


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: EMG


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_K_4

ncbi_organism_name: uncultured Rudaea sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_submitter: PARUL UNIVERSITY


ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_organism_name: Streptomyces sp. NPDC094153

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter pseudoroggenkampii

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Muriicola sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterobacter sp. BNK-13

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Siena College


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: South African National Antarctic Programme


ncbi_organism_name: Avibacterium paragallinarum

ncbi_strain_identifiers: SCPM-O-B-16400 (26z Pocrov)

ncbi_submitter: SRCAMB


ncbi_organism_name: uncultured Dechloromonas sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Rhodothermales bacterium


ncbi_organism_name: Dialister invisus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces cyaneofuscatus


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Fibrobacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Konstanz


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Stockholm University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured bacterium


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Basel


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter japonicus


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Chosun University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Thermocrinis jamiesonii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: Corneal Scraping

ncbi_organism_name: Pseudomonas aeruginosa BL11

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Cornell University


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: USA: Michigan

ncbi_isolation_source: School hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: University of California, Riverside


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: EMG


ncbi_country: China:Naqu City

ncbi_organism_name: Flaviflexus equikiangi

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_country: Sweden: Lund

ncbi_organism_name: Aerococcus urinae

ncbi_submitter: Region Zealand


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas sp. PA-3-6E

ncbi_submitter: NIAB East Malling Research


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Aerococcus mictus


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: National Taiwan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Candidatus Aegiribacteria sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__FCB group incertae sedis;g__Candidatus Aegiribacteria;x__unclassified Candidatus Aegiribacteria;s__Candidatus Aegiribacteria sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Streptomyces sp. NBC_01216

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: Brazil: Belem

ncbi_isolation_source: meat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_country: Japan: Pacific Ocean

ncbi_isolation_source: Sea water (open ocean)

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Netherlands: Maasland

ncbi_isolation_source: soil using lettuce seedlings as bait

ncbi_organism_name: Sphingobium xanthum

ncbi_submitter: Huazhong Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Listeria innocua

ncbi_submitter: PulseNet USA


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: Hong Kong

ncbi_isolation_source: Shatin WWTPs_74 WWTPs influent

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The University of Hong Kong


ncbi_country: Israel: Beit Yanai beach

ncbi_isolation_source: seawater

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Portugal

ncbi_isolation_source: not known


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sulfuritalea hydrogenivorans sk43H

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: IMG-taxon 2667528161 annotated assembly

ncbi_organism_name: Caenispirillum bisanense

ncbi_strain_identifiers: USBA 140

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Mycobacterium seoulense

ncbi_submitter: Affiliated Dongyang Hospital of Wenzhou Medical University


ncbi_organism_name: Pseudomonas sp. SJZ083

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Antarctica: South Shetland Islands

ncbi_isolation_source: soil

ncbi_organism_name: Psychrobacter sp. PAMC 21119

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_assembly_name: freshwater MAG --- Ja1-D2_bin-1642

ncbi_submitter: BILS


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Thiohalomonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Australia: Newcastle

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_organism_name: Anabaenopsis circularis NIES-21

ncbi_submitter: Toyohashi University of Technology


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Russia: Samara

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Netherlands: Burgers  Zoo; Arnhem

ncbi_organism_name: Candidatus Cardinium sp. cByotN1

ncbi_submitter: International Brevipalpus Genome Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Amoebophilaceae;g__Candidatus Cardinium;x__unclassified Candidatus Cardinium;s__Candidatus Cardinium sp. cByotN1


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1471

ncbi_submitter: Broad Institute


ncbi_isolation_source: abscess pelvic

ncbi_organism_name: Streptococcus sp. HMSC076H08

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Taiwan

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Shanghai Jiaotong University school of medicin


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_country: USA: GA

ncbi_isolation_source: forest

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Inverness


ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-1 day 1477

ncbi_organism_name: Geotoga sp.

ncbi_submitter: The Ohio State University


ncbi_isolation_source: lake water

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University hospital Lubeck


ncbi_country: USA

ncbi_organism_name: Glaesserella parasuis 84-17975

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: respiratory tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Jamaica: West Indies

ncbi_isolation_source: sugarcane

ncbi_organism_name: Pseudomonas sp. RIT412

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Acetobacter sp. DmW_125

ncbi_submitter: Brigham Young University


ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Lachnospiraceae bacterium MD308

ncbi_submitter: Broad Institute


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: AtoGen Co., Ltd.


ncbi_country: Taiwan: Taoyuan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Streptomyces sp. NPDC005951

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Surgical wound

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Bangladesh

ncbi_isolation_source: Pig Farm

ncbi_submitter: Uppsala University


ncbi_country: Mauritius: Albion

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Mauritius


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: MS

ncbi_isolation_source: Young Chickens

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N60190F

ncbi_submitter: FDA


ncbi_country: China: Shanghai City

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Zhejiang University


ncbi_country: China: Huizhou

ncbi_isolation_source: wound

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Riemerella anatipestifer RA-CH-2

ncbi_submitter: Avian Disease Research Center, Sichuan Agricultural University


ncbi_country: Russia: Moscow

ncbi_organism_name: Diplocloster modestus

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sanguinis SK1056

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae KP3-S

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Buchnera aphidicola (Takecallis taiwana)

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Streptomyces violaceusniger

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: uncultured Actinomycetaceae bacterium


ncbi_country: China: South China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Cocleimonas sp.

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Antarctica: Armona point ASPA 133

ncbi_organism_name: Pseudochrobactrum sp. Wa41.01b-1

ncbi_submitter: Network for Extreme Environment Research


ncbi_organism_name: uncultured Rhodobiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Streptococcus sanguinis SK355


ncbi_organism_name: Streptomyces pilosus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Costa Rica: San Jose

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Universidad de Costa Rica


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1641 from squamous cell carcinomas patient MST029

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Permafrost

ncbi_organism_name: Paracoccus yeei

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: France

ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Australia: Victoria

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Clostridia bacterium


ncbi_country: USA: Birmingham; Alabama

ncbi_isolation_source: cervicovaginal lavage

ncbi_organism_name: Candidatus Lachnocurva vaginae

ncbi_submitter: University of Maryland Baltimore


ncbi_organism_name: Sulfuricella sp.


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Salmonella sp. NW48

ncbi_submitter: Sichuan University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Porphyromonadaceae bacterium UBA4625

ncbi_submitter: University of Queensland


ncbi_organism_name: Nocardia brasiliensis

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Motiliproteus sp.

ncbi_submitter: University of East Anglia


ncbi_country: China: Jinhua

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Butyricicoccaceae bacterium


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sp. GD04058

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: skin of a pig

ncbi_organism_name: Macrococcus armenti

ncbi_submitter: University of Bern


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: South Africa:Carletonville

ncbi_isolation_source: urethral

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of California, Berkeley


ncbi_isolate: Bacillus sp. 349Y

ncbi_organism_name: Bacillus sp. 349Y

ncbi_strain_identifiers: Bacillus sp. 349Y

ncbi_submitter: Elham Karimi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 349Y


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_organism_name: Streptomyces sp. NBC_00055

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Ataturk Universitesi


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Milan


ncbi_organism_name: Thermoanaerobaculum sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Enterovibrio sp. 27052020O

ncbi_submitter: University of Miyazaki


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: MPI for marine Microbiology


ncbi_submitter: China Jiliang University


ncbi_submitter: University Hospital Basel


ncbi_organism_name: Sulfurihydrogenibium sp.


ncbi_organism_name: Roseburia inulinivorans


ncbi_organism_name: Bacillaceae bacterium No. 88

ncbi_submitter: Bei Hang Univercity

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;x__unclassified Bacillaceae;s__Bacillaceae bacterium No. 88


ncbi_organism_name: Streptomyces sp. NPDC057250

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: bacterium


ncbi_country: Atlantic Ocean

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EBI


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: North Carolina State University


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Carlos Chagas - Fiocruz Parana


ncbi_organism_name: Mycolicibacterium parafortuitum

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_isolation_source: pig gut metagenome


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Institute of Animal Husbandry and Veterinary, Hubei Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T44444

ncbi_submitter: Broad Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Corynebacterium durum

ncbi_submitter: Oregon Health and Science University


ncbi_country: Mexico

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: INSTITUTO NACIONAL DE SALUD


ncbi_country: Spain

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University of Parma


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Johnsonella sp.


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_country: South Korea

ncbi_isolation_source: Porcine feces

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Seoul National University


ncbi_organism_name: Erysipelotrichales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ralstonia solanacearum PSI07

ncbi_submitter: CEA-Genoscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia solanacearum;x__Ralstonia solanacearum PSI07


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Universidad Nacional de La Plata


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: China: Yuncheng

ncbi_isolation_source: salt lake

ncbi_organism_name: Agromyces agglutinans

ncbi_submitter: Henan Normal University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: New York

ncbi_isolation_source: normally sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Research Institute


ncbi_country: Ireland

ncbi_organism_name: Mycolicibacterium mucogenicum

ncbi_submitter: St. James's Hospital


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: Italy

ncbi_isolation_source: lymph node wild boar

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: unpasteurized egg white

ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Otago


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: USA: Walter Reed Army Medical Center; Washington; DC

ncbi_organism_name: Acinetobacter baumannii OIFC137

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-4227

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Stutzerimonas degradans

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. SJL17-4

ncbi_submitter: USDA ARS


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: AAFC


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: soil

ncbi_organism_name: Herbaspirillum sp. WKF16

ncbi_submitter: Wonkwang University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_organism_name: Cardiobacterium hominis


ncbi_country: China

ncbi_isolation_source: sediment

ncbi_organism_name: Pontiellaceae bacterium B1224

ncbi_submitter: Marine College


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: Norway

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria innocua

ncbi_submitter: Nofima


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: water

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: Nebraska

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Russia

ncbi_isolation_source: milk products

ncbi_organism_name: Lactiplantibacillus plantarum 2165

ncbi_submitter: Kingston Uniiversity


ncbi_organism_name: uncultured Planifilum sp.


ncbi_country: Germany

ncbi_isolation_source: Bronchial secretions/BAL

ncbi_submitter: SurvCARE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Biogas Institute of Ministry of Agriculture and Rual Affairs


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_country: Russia: Moscow

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus intestinalis


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;x__unclassified Candidatus Zambryskiibacteriota;s__Candidatus Zambryskiibacteriota bacterium


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Basurto University Hospital


ncbi_isolation_source: stool

ncbi_organism_name: Blautia producta

ncbi_submitter: QuantHealth


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Dactylosporangium matsuzakiense

ncbi_strain_identifiers: VKM Ac-1321

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Coxiellaceae bacterium


ncbi_country: China: Daggyai Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_country: South Korea

ncbi_organism_name: Novosphingobium sp. MW5

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Brevibacillus parabrevis

ncbi_strain_identifiers: NRRL NRS 605

ncbi_submitter: NCAUR-ARS-USDA


ncbi_isolate: metabat2_coassembly_bwa.129 MAG

ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_strain_identifiers: metabat2_coassembly_bwa.129 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0268

ncbi_submitter: Broad Institute


ncbi_isolation_source: human blood of bacteremia patient

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_country: USA: Scott Valley; California

ncbi_isolation_source: plant stem

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: Australia

ncbi_isolation_source: sewage from residential aged care facility

ncbi_organism_name: Stenotrophomonas sp. Sm5341

ncbi_submitter: Medical Research Future Fund


ncbi_organism_name: uncultured Parasphingorhabdus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Chiang Mai University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sobrinus TCI-367

ncbi_submitter: JCVI


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: Singapore

ncbi_isolation_source: supermarket

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: South Korea: Incheon

ncbi_isolation_source: sediment

ncbi_organism_name: Oricola thermophila

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_submitter: Quadram Institutte


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3745

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3745


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Vienna


ncbi_country: France: Zellenberg

ncbi_organism_name: Exiguobacterium acetylicum

ncbi_submitter: Kher Heng Leong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium acetylicum


ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Paraburkholderia kirstenboschensis

ncbi_submitter: University of California Berkeley


ncbi_country: USA: WA

ncbi_isolation_source: food

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: The University of Texas at San Antonio


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USDA-ARS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Hamburg

ncbi_isolation_source: water rainwater-tap Botanic Garden Hamburg

ncbi_organism_name: Duganella sp. HH101

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: EPFL


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sp. GD03862

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: New Mexico

ncbi_isolation_source: feces

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Bacteroides uniformis dnLKV2


ncbi_organism_name: Streptomyces sp. NBC_00101

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: cornea

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of New South Wales


ncbi_isolation_source: Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: Puerto Rico: JUNCOS

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: intestinal content

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: ChinaCDC


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Butyricicoccus faecihominis

ncbi_submitter: University of Chicago


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Ferrovum sp. 34-44-207


ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli KTE145

ncbi_submitter: Broad Institute


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: United Kingdom: Cardiff

ncbi_isolation_source: Dental implant

ncbi_organism_name: Prevotella scopos JCM 17725

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella scopos;x__Prevotella scopos JCM 17725


ncbi_organism_name: Pirellula sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SRCAMB


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptococcus suis


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Paenibacillus rhizolycopersici

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: Chongqing three gordes medical college


ncbi_isolation_source: Terrestrial

ncbi_organism_name: Microcoleus sp. FACHB-1515

ncbi_submitter: South China Normal University


ncbi_assembly_name: gabuh8807 v01

ncbi_organism_name: Acinetobacter baumannii UH8807

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Russia: Moscow

ncbi_isolation_source: vent. liquor

ncbi_organism_name: Acinetobacter baumannii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Washington; Hanford 300 Area; IFRC

ncbi_isolation_source: Hanford 300 Area IFRC 399-1-60 Groundwater

ncbi_organism_name: Parcubacteria bacterium C7867-008

ncbi_submitter: Pacific Northwest National Laboratroy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Parcubacteria;s__Parcubacteria bacterium C7867-008


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France: Tahiti

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Ireland: Cork

ncbi_isolation_source: Peripheral Blood Culture (three separate sets; anaerobic bottles only)

ncbi_organism_name: Campylobacter fetus

ncbi_submitter: Cork Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: intestine

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: yogurt

ncbi_organism_name: Lacticaseibacillus paracasei subsp. tolerans

ncbi_submitter: Howard University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: India: South Sikkim

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Tepidimonas fonticaldi

ncbi_submitter: Institute of Microbial Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG