ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University School of Medicine


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_isolation_source: fermentation

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_isolation_source: cold seep

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: faculty of agriculture, university of belgrade

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Clemson University


ncbi_country: China: Jiangxi

ncbi_isolation_source: Acid mine drainage

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_strain_identifiers: DX

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Dyadobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Hong Kong

ncbi_isolation_source: stool

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-4275

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8946

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Atribacter alterifermentans

ncbi_submitter: Technical University of Denmark

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: ice core

ncbi_organism_name: Cryobacterium sp. Y29

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: uncultured bacterium


ncbi_assembly_level: Complete Genome

ncbi_country: Indian Ocean

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Crassaminicella thermophila

ncbi_refseq_category: reference genome

ncbi_submitter: Institute of Deep-Sea Science and Engineering, CAS


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: KOlimastIR


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Dalian

ncbi_organism_name: Lactobacillus sp. LMY-20

ncbi_submitter: Dalian University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_assembly_name: freshwater MAG --- T7_bin-629

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC070D05

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_country: USA: Pennsylvania

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Abditibacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 11265

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_isolation_source: not known


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Denmark: Hjorring

ncbi_isolation_source: activated sludge from Hjor_18-Q3-R7-51

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Aalborg University


ncbi_assembly_name: PMEN

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mitsuokella multacida


ncbi_organism_name: uncultured Candidatus Moduliflexus sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Candidatus Moduliflexota;c__Candidatus Moduliflexia;o__Candidatus Moduliflexales;f__Candidatus Moduliflexaceae;g__Candidatus Moduliflexus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Moduliflexota;c__Candidatus Moduliflexia;o__Candidatus Moduliflexales;f__Candidatus Moduliflexaceae;g__Candidatus Moduliflexus;x__environmental samples;s__uncultured Candidatus Moduliflexus sp.


ncbi_submitter: bioMerieux


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nonomuraea sp. NPDC003709

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhodococcus pyridinivorans


ncbi_organism_name: Sphingomonas sp. gentR

ncbi_strain_identifiers: gentR

ncbi_submitter: Jiangxi Agricultural University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_assembly_name: Rumen uncultured genome RUG10290

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: Austria: Grossglockner area; Alps

ncbi_isolation_source: alpine soil

ncbi_organism_name: Sphingomonas alpina

ncbi_submitter: University of Bonn


ncbi_country: Italy

ncbi_organism_name: Bacillus sp. AG442

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AG442


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: Two-stage PNA wastewater reactor

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Washington


ncbi_country: Switzerland

ncbi_isolation_source: cucumber roots

ncbi_organism_name: Pseudomonas sp. P97.38

ncbi_submitter: JLU


ncbi_country: Iran

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: Intraabdominal infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: Oregon

ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:-


ncbi_country: Bangladesh

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: icddrb


ncbi_country: USA: Tatoosh Island; Washington

ncbi_isolation_source: kelp blade surface swab

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Washington-Seattle


ncbi_isolate: CON6 bin30

ncbi_organism_name: Fibrobacter sp.

ncbi_strain_identifiers: CON6 bin30

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: University of Galway


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Shanghaitech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus NCTC 8325;x__Staphylococcus aureus subsp. aureus RN4220


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_isolation_source: Anaerobic digestion effluents of chicken manure

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: uncultured Megasphaera sp.


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: basaltic crustal fluids

ncbi_organism_name: Candidatus Desulfopertinax cowenii

ncbi_submitter: University of Hawaii


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_submitter: USUHS


ncbi_organism_name: Pseudescherichia sp.


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Haemophilus influenzae


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: jejunum

ncbi_organism_name: Methylorubrum populi

ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Mar Menor (Region de Murcia)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad de Alicante


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Hong Kong

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: HKU


ncbi_assembly_name: Salmonella enterica CVM N51244 v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Chicken Wings

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: ProBone


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: Spain

ncbi_isolation_source: clam larvae aquaculture

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: enrichment of activated sludge from Daejeon WWTP

ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: KAIST


ncbi_country: China: Suzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Suzhou Hospital of Traditional Chinese Medicine


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. S41-2

ncbi_submitter: Soochow University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: UZ Gent


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: BGI


ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: water from CO2 storage reservoir

ncbi_organism_name: Sulfuricurvum sp. PD_MW2

ncbi_submitter: National Energy Technology Laboratory


ncbi_organism_name: uncultured Bythopirellula sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agriculture University


ncbi_organism_name: Klebsiella cf. planticola B43

ncbi_submitter: Kazusa DNA Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nangjing

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Toho University


ncbi_country: China: Henan

ncbi_organism_name: Escherichia sp. XD12


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Instituto de Quimica


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_submitter: Massey University


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Extibacter muris

ncbi_submitter: University of Chicago


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Belgium

ncbi_submitter: University of Liege


ncbi_organism_name: Salmonella sp. NW1180

ncbi_submitter: Sichuan University


ncbi_organism_name: Citrobacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: South Korea: GwangJu

ncbi_isolation_source: kimchi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: wikim 18

ncbi_submitter: WIKIM


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Eremococcus coleocola ACS-139-V-Col8

ncbi_submitter: J. Craig Venter Institute


ncbi_country: United Kingdom

ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG12984

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1561

ncbi_submitter: Broad Institute


ncbi_country: Svalbard

ncbi_isolation_source: sea water

ncbi_organism_name: Salinibacterium sp. NSLL35

ncbi_submitter: Shandong University


ncbi_organism_name: Shewanella submarina

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Lebanon

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American University


ncbi_country: USA: Texas

ncbi_organism_name: Comamonas odontotermitis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolate: E. coli RL465

ncbi_strain_identifiers: E. coli RL465

ncbi_submitter: JUSTUS LIEBIG UNIVERSITAT


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Sphingobacterium sp. UBA1498

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Quadram Institutte


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The British University in Egypt


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Sulfuritalea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: United State Department of Agriculture


ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC058807

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 761

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Salmonella sp. C3321

ncbi_submitter: Sichuan University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: uncultured Sulfurovum sp.


ncbi_organism_name: Yoonia sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Robiginitalea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: feces

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: Human

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Menzies School of Health Research


ncbi_isolation_source: fermented vinegar broth

ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: Korea University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Prevotella scopos JCM 17725

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella scopos;x__Prevotella scopos JCM 17725


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - thermal hydrolysis pre-treatment sludge

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Guangxi University


ncbi_isolation_source: human skin metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: uncultured Lachnobacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Taiwan

ncbi_isolation_source: tissue

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Streptomyces sp. SS162

ncbi_submitter: Center for Research and Application in Bioscience


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Nevskia sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Antecubital fossa swab

ncbi_organism_name: Niallia taxi

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Zhangzhou

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus sp. FJAT-49711

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-49711


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Calistoga

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: USA: Utah

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Wageningen University and Research


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: University of Southern California


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: filter from dairy farm

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhodoluna limnophila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Noviherbaspirillum sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_submitter: Tsinghua University


ncbi_country: USA

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes


ncbi_country: Slovakia

ncbi_isolation_source: bryndza cheese

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Natural Sciences of the Comenius University in Bratislava


ncbi_country: USA: Minnesota

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Netherlands: Ooijpolder

ncbi_isolation_source: biomass on anode of bioreactor after 21 days

ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Xenorhabdus mauleonii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: the hong kong university of science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Arcanobacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Sputum

ncbi_organism_name: Pseudomonas sp. Marseille-Q5115

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Xenorhabdus nematophila

ncbi_submitter: Northwest A&F University


ncbi_country: China: Guangdong

ncbi_isolation_source: Guangdong; China

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Clostridium fessum

ncbi_submitter: BGI-Shenzhen


ncbi_country: China

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: GensKey Medical Technology Co. Ltd.


ncbi_isolation_source: isolated from the sediment in the Norilsk hydrometallurgy tailings dam

ncbi_organism_name: Desulfosporosinus sp. OT

ncbi_strain_identifiers: OT

ncbi_submitter: Asbach


ncbi_organism_name: Mesorhizobium sp. M1163

ncbi_submitter: Washington State University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia: WA; Badgingarra

ncbi_organism_name: Mesorhizobium sp. B2-2-4

ncbi_submitter: Curtin University


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces griseofuscus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: INRAE


ncbi_country: Puerto Rico

ncbi_isolation_source: food whole grain corn

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Lund University


ncbi_country: Burkina Faso

ncbi_isolation_source: eggs

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: Bull prepuce

ncbi_organism_name: Campylobacter fetus subsp. venerealis

ncbi_strain_identifiers: TD

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces from Zagget the koala

ncbi_organism_name: Ruminococcus sp. Zagget11

ncbi_submitter: University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2639762519 annotated assembly

ncbi_organism_name: Arthrobacter woluwensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Gardnerella vaginalis 409-05

ncbi_submitter: J. Craig Venter Institute


gtdb_type_species_of_genus: t

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universite de Caen


ncbi_submitter: Chulalongkorn university


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_country: USA: Hawaii

ncbi_isolation_source: decaying wood

ncbi_organism_name: Flavobacterium akiainvivens

ncbi_submitter: University of Hawaii at Manoa


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0884

ncbi_submitter: Broad Institute


ncbi_country: Thailand: Songkhla

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Planktosalinus sp.

ncbi_submitter: Rutgers University


ncbi_submitter: University Hospital- Biomedical Research Institute


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Montreal


ncbi_organism_name: Sporosarcina pasteurii

ncbi_strain_identifiers: DSM 33

ncbi_submitter: Air Force Research Laboratory


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Klebsiella variicola


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China:Guangdong; Shenzhen

ncbi_isolation_source: anal swabs

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: BGI-Shenzhen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: Scarlet fever

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Agricultural Bioresources Research Institute


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F92119_080312


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_country: Malaysia

ncbi_isolation_source: soil sample

ncbi_organism_name: Microtetraspora sp. AC03309

ncbi_submitter: Sarawak BIodiversity Centre


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2623621014 annotated assembly

ncbi_organism_name: Clostridium sp. DSM 8431

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;x__unclassified Clostridium;s__Clostridium sp. DSM 8431


ncbi_country: Japan

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Toho University


ncbi_country: USA: Colorado

ncbi_isolation_source: agricultural soil; no till

ncbi_organism_name: Citricoccus sp. WCRC_4

ncbi_submitter: Colorado State University


ncbi_assembly_name: gabuh107pb v01

ncbi_organism_name: Acinetobacter baumannii UH10707

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: Stool Specimen

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: icddr,b


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_organism_name: Eisenbergiella porci

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Wujia chipingensis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: contaminated soil

ncbi_submitter: Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium;s__Novosphingobium album (ex Liu et al. 2023)


ncbi_country: Netherlands: Nadir Nadir MP005 microfiltration flat sheet membrane

ncbi_isolation_source: tap water membrane filter

ncbi_organism_name: Sphingomonas paucimobilis

ncbi_submitter: Arizona State University


ncbi_country: China: Sichuan

ncbi_isolation_source: goat

ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Southwest University for Nationalities


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: river water

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Centre pasteur du Cameroun


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus M49501

ncbi_submitter: Broad Institute


ncbi_organism_name: Arthrobacter sp. USHLN218

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Ottowa

ncbi_organism_name: Paenarthrobacter aurescens

ncbi_submitter: Emory University


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: Ocean University of China


ncbi_isolation_source: sputum sample from patient with lung infection

ncbi_organism_name: Mycobacteroides abscessus M152

ncbi_submitter: Universiti Malaya, Kuala Lumpur


ncbi_isolation_source: diabetic foot ulcer sample 5

ncbi_organism_name: Corynebacterium sp. LK26

ncbi_submitter: UPenn


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Colombia: Sucre

ncbi_isolation_source: Blood culture

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_country: France

ncbi_isolation_source: cheese rind

ncbi_organism_name: Advenella sp. FME57

ncbi_submitter: INRA


ncbi_isolation_source: SWINE FECES

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romana


ncbi_isolation_source: kimchi

ncbi_strain_identifiers: KCTC 3527

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;x__Leuconostoc gelidum group;s__Leuconostoc gelidum;sb__Leuconostoc gelidum subsp. gelidum;x__Leuconostoc gelidum subsp. gelidum KCTC 3527


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Colombia

ncbi_isolation_source: Fecal samples of patients suffering diarrhea

ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: Singapore: Singapore General Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_assembly_name: freshwater MAG --- Loclat_bin-13126

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alcaligenes nematophilus

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University (BSMRAU)


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: uncultured Sangeribacter sp.


ncbi_submitter: Washington University in St Louis


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nantong Center for Disease Control and Prevention


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Salmonella sp. NW108

ncbi_submitter: Sichuan University


ncbi_organism_name: Desulfatirhabdiaceae bacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha intestinigallinarum


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Bacillus pacificus

ncbi_strain_identifiers: TIAC 4009

ncbi_submitter: Ghent University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Technology Agartala


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guizhou Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Ochrobactrum sp. BD23

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Streptomyces sp. NPDC001594

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: SponGES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: CCX

ncbi_submitter: Enze Hospital


ncbi_isolate: SPRUCE 321

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 321

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: concordia university


ncbi_organism_name: Oenococcus kitaharae

ncbi_submitter: Teagasc


ncbi_country: India: Sativali

ncbi_isolation_source: Hot spring sediment

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus sp. GDB20D122A5

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: SCOPE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: AAFC


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Gambia

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_isolation_source: See Cohan et al. Evolution; 1991

ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: Weizmann institute for Science


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Candidatus Brocadia sp.

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp.


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_country: USA: Florida

ncbi_isolation_source: Swine feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: USA: California

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UCI 66

ncbi_strain_identifiers: UCI 66

ncbi_submitter: Broad Institute


ncbi_organism_name: Psychrobacillus sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: Rhizosphere of camphor trees

ncbi_organism_name: Pseudomonas sp. BN515


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Nonlabens marinus S1-08

ncbi_submitter: Atmosphere and Ocean Research Institute, Univ. Tokyo


ncbi_isolation_source: terrestrial

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_country: Nepal: Chitwan

ncbi_isolation_source: lungs

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Michigan State University


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: water

ncbi_organism_name: Prochlorococcus sp. UBA7854


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: 1-5 micron

ncbi_organism_name: Vibrio sp. F12

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Jilin

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Salmonella enterica CVM 43828 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Salmonella sp. NW105

ncbi_submitter: Sichuan University


ncbi_isolation_source: Sea water

ncbi_organism_name: Aquimarina megaterium

ncbi_submitter: CENTRE OF MARINE SCIENCES


ncbi_organism_name: Candidatus Nanosynbacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;x__unclassified Candidatus Nanosynbacteraceae;s__Candidatus Nanosynbacteraceae bacterium


ncbi_organism_name: Algiphilus sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Pseudomonas sp. efr-133-R2A-59

ncbi_submitter: University of Chicago


ncbi_country: China

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Schaalia odontolytica

ncbi_strain_identifiers: NCTC 9935

ncbi_submitter: University of Malaya


ncbi_country: Chile

ncbi_isolation_source: ice cream

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: South Africa

ncbi_isolation_source: lung

ncbi_submitter: San Diego State University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: China: rice field

ncbi_isolation_source: soil biofilm

ncbi_organism_name: Microbacterium testaceum

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: microbial mat

ncbi_organism_name: Chroococcales cyanobacterium PMM_0021

ncbi_submitter: University of Liege


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Canada: Lacombe

ncbi_organism_name: Selenomonas sp.

ncbi_submitter: AAFC


ncbi_country: Turkey: Samsun

ncbi_organism_name: Streptomyces sp. RT42

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Enterococcus hulanensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: marine water

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Nebraska

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Nebraska Medical Center


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Makerere University


ncbi_organism_name: [Pasteurella] mairii

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;x__Pasteurellaceae incertae sedis;x__[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex;s__[Pasteurella] mairii


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_strain_identifiers: Fiocruz LV2841

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2841


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: human

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Ileibacterium valens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Devosiaceae bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: China: Ngari; Tibet

ncbi_isolation_source: sediment samples of Dongcuo Lake

ncbi_organism_name: Myxococcus sp. SDU36

ncbi_submitter: Shandong University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caccae


ncbi_organism_name: Flavobacterium ammonificans

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Maywood; IL

ncbi_submitter: Loyola University Chicago


ncbi_country: India: KA

ncbi_isolation_source: homogenate diseased silkworms

ncbi_organism_name: Sphingobacterium paucimobilis HER1398

ncbi_submitter: University of British Columbia


ncbi_organism_name: Acinetobacter sp. KAM396

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: Rwanda: Kicukiro

ncbi_isolation_source: blood

ncbi_submitter: University of Rwanda

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: New Zealand

ncbi_isolation_source: low density polyethylene (LPDE) from waste management plant

ncbi_organism_name: Shewanella sp. SM103

ncbi_submitter: AgResearch


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: University of Chicago


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus sp. Marseille-P8640

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_country: Taiwan: Taoyuan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_submitter: Microbial Ecology and Technology Research Group, Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;f__Minisyncoccaceae;g__Candidatus Microsyncoccus;s__Candidatus Microsyncoccus archaeolyticus


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: France:Paris; Seine River

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Parsi-Saclay/ UMR1184


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Microbacterium sp. NPDC058389

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: Aberystwyth

ncbi_isolation_source: throat

ncbi_organism_name: Fusobacterium necrophorum

ncbi_submitter: Cardiff Metropolitan University


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_assembly_name: freshwater MAG --- Ja2-D4_bin-0730

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcus sp.

ncbi_submitter: BILS


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Ventricola gallistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;s__Candidatus Ventricola gallistercoris


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Neisseriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: South China Sea

ncbi_isolation_source: Sea water

ncbi_organism_name: Desulfovibrio sp. JC010

ncbi_submitter: OUC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: USA: San Diego

ncbi_isolation_source: Aquarium filter

ncbi_organism_name: Pseudoalteromonas luteoviolacea

ncbi_submitter: San Diego State University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Kingella denitrificans


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: artisanal dairy product

ncbi_submitter: Danone Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei;sb__Lacticaseibacillus paracasei subsp. paracasei;x__Lacticaseibacillus paracasei subsp. paracasei Lpp43


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-318

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-318


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;s__Candidatus Colwellbacteria bacterium RIFCSPLOWO2_02_FULL_44_20b


ncbi_country: Japan: Tokushima

ncbi_organism_name: Pseudomonas lactucae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Aston University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: India

ncbi_organism_name: Mycolicibacterium novocastrense

ncbi_submitter: JCVI


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Cronobacter dublinensis subsp. dublinensis

ncbi_submitter: University of Wyoming


ncbi_country: South Korea: South Sea

ncbi_isolation_source: intestine

ncbi_organism_name: Shewanella algae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22905;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Sichuang

ncbi_isolation_source: fish viscera

ncbi_organism_name: Listeria monocytogenes


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 329

ncbi_organism_name: Staphylococcus agnetis

ncbi_strain_identifiers: SNUC 3610

ncbi_submitter: University of Calgary


ncbi_organism_name: Gaiella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: caecum

ncbi_organism_name: Collinsella sp. An268

ncbi_submitter: Veterinary Research Institute


ncbi_country: Thailand: Trang

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Brazil: Belem

ncbi_organism_name: Vibrio cholerae IEC224

ncbi_submitter: Instituto Evandro Chagas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae IEC224


ncbi_country: Micronesia: Yap

ncbi_isolation_source: heart fluid

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: Ligilactobacillus salivarius


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0394

ncbi_submitter: Broad Institute


ncbi_isolation_source: wastewater

ncbi_organism_name: Acholeplasmataceae bacterium


ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW215-R2

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolate: Urine

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STw 127;NILS65:B2;STp 33;O6:H31;Urine

ncbi_submitter: UMR 1137 IAME


ncbi_country: China: Jiangsu

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: EMG


ncbi_country: Russia: Kemerovo Oblast; Kuzbass

ncbi_isolation_source: coal

ncbi_organism_name: Hydrogenibacillus schlegelii

ncbi_submitter: Research Center of Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;f__Bacillales Family X. Incertae Sedis;g__Hydrogenibacillus;s__Hydrogenibacillus schlegelii


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 44298_6

ncbi_submitter: Institute for Genome Sciences


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bacteroides sp. GD17

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 18

ncbi_organism_name: Chlorobiaceae bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_isolation_source: Tracheal Aspirate/Wash

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: USA: San Diego County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Zhejiang

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: France: Normandie

ncbi_isolation_source: starch

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: INRA A3

ncbi_submitter: TU Muenchen


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Turkey: Mugla

ncbi_organism_name: Chryseobacterium muglaense

ncbi_submitter: Erciyes University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Hefei

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: the First Affiliated Hospital of Anhui Medical University


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Syntrophaceae bacterium


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Laboratory of Applied Microbiology, Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Switzerland: Chrutzelried Forest; Canton Zurich

ncbi_isolation_source: base of tree

ncbi_organism_name: Pseudomonas fungipugnans

ncbi_submitter: Gebert Rüf Stiftung


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Pseudarthrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces sp. NPDC060010

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus cereus


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Rubrivivax sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Flavobacterium algoriphilum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal University of Agriculture Abeokuta


ncbi_organism_name: Streptomyces rubiginosohelvolus


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Xanthomarina gelatinilytica

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: uncultured Leptospiraceae bacterium


ncbi_organism_name: Streptomyces sp.


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Hydromonas sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_isolation_source: metagenome

ncbi_organism_name: Aerococcaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: Von Damm hydrothermal vent plume at depth 2041m

ncbi_organism_name: Methylophaga sp. UBA2012


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Thermoanaerobaculales bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Phalera bucephala


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine

ncbi_organism_name: Opitutia bacterium


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Lund University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Lachnospiraceae bacterium HCP1S3_C2

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: New Zealand

ncbi_isolation_source: Diphtheritic lesion

ncbi_organism_name: Corynebacterium sp. 48B

ncbi_submitter: Northumbria University


ncbi_isolation_source: human gut

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Actinomyces bowdenii

ncbi_submitter: King's College London


ncbi_country: Brazil

ncbi_organism_name: Paraburkholderia atlantica

ncbi_submitter: University of Pretoria


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Maanshan; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: South china normal university


ncbi_country: China

ncbi_isolation_source: faece

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 55

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Succinivibrionaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: Cleveland Clinic


ncbi_country: Russia: North Caucasus region

ncbi_organism_name: Neorhizobium galegae

ncbi_submitter: ARRIAM


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL020141

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ktedonobacterales bacterium


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Canada: Lacombe

ncbi_organism_name: Actinomyces urogenitalis

ncbi_submitter: AAFC


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: manure wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Norway

ncbi_isolation_source: Tissue from head

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Acetobacter syzygii

ncbi_submitter: Teagasc


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-552

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: China: Huizhou

ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Qipengyuania aestuarii

ncbi_submitter: Guangdong Academy of Sciences


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_assembly_name: freshwater MAG --- KR_bin-2728

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Capnocytophaga sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Apibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Myroides sp. mNGS23_01

ncbi_submitter: dianzhenduan


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Thermosipho melanesiensis BI429

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Japan

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Toho University