ncbi_organism_name: uncultured Lachnospiraceae bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Australia: Newcastle

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: University of Queensland


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: freshwater MAG --- Ki3-D4_bin-450

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_assembly_level: Scaffold

ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Brazil

ncbi_isolation_source: pecked egg yolk

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_assembly_level: Chromosome

ncbi_country: Trinidad and Tobago: Trinidad; Lopinot

ncbi_isolation_source: Lettuce Plant

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: The University of the West Indies


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: t

ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Desulfofervidaceae bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Desulfofervidia;o__Candidatus Desulfofervidales;f__Candidatus Desulfofervidaceae;x__unclassified Candidatus Desulfofervidaceae;s__Candidatus Desulfofervidaceae bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum;x__Mycobacterium tuberculosis variant africanum MAL010071


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Escherichia coli

ncbi_submitter: IST Austria


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Marinoscillum sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Pilosibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: IMG-taxon 2654588122 annotated assembly

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptomyces sp. SBR177

ncbi_submitter: Indian Institute of Science Education and Research Kolkata


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: North Korea

ncbi_isolation_source: healthy Korean feces

ncbi_organism_name: Bacteroides humanifaecis

ncbi_submitter: Korean Collection for Type Culture, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Cellulosilyticaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Amycolatopsis sp.


ncbi_organism_name: Ktedonobacterales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_isolation_source: wastewater

ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: Southwest Medical University


ncbi_submitter: Northeast Forestry University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacteriaceae bacterium UBA2004

ncbi_submitter: University of Queensland


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Gillisia sp. Hel_I_86

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University College Cork


ncbi_country: China: WuHan

ncbi_isolation_source: bioaerosol of a chicken farm

ncbi_submitter: Hubei Academy of Agricultural Sciences


ncbi_organism_name: Pseudomonas orientalis

ncbi_submitter: UAEU


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Maryland

ncbi_isolation_source: peri-anal swab

ncbi_organism_name: Klebsiella pneumoniae 11227-1

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Novome Biotechnologies


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Raoultella sp. 18111

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Polymyxin B

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Queensland


ncbi_country: China: Guangzhou

ncbi_isolation_source: compost

ncbi_organism_name: Pseudoxanthomonas composti

ncbi_refseq_category: reference genome

ncbi_submitter: School of Environment

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: Fortiea sp. LEGE XX443

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Fortieaceae;g__Fortiea;x__unclassified Fortiea;s__Fortiea sp. LEGE XX443


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: Germany

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Brazil: Sao Paulo; Promissao

ncbi_isolation_source: Skin lesion from a Brazilian Purpuric Fever case

ncbi_organism_name: Haemophilus influenzae biotype aegyptius

ncbi_submitter: Institute of Biology - University of Campinas


ncbi_organism_name: Hydrogenophaga sp. 5NK40-0174

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NITE)


ncbi_country: Argentina

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: Instituto de Investigaciones en Biociencias Agricolas y Ambientales


ncbi_country: USA: Shenandoah; Iowa

ncbi_isolation_source: Apple seedling crown gall

ncbi_organism_name: Agrobacterium tumefaciens str. B6

ncbi_submitter: Monash University Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Agrobacterium;x__Agrobacterium tumefaciens complex;s__Agrobacterium tumefaciens;x__Agrobacterium tumefaciens str. B6


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: cecum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KPC

ncbi_submitter: MIT


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: GA

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_country: USA: Utah

ncbi_isolation_source: infant

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food

ncbi_submitter: University of British Columbia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Edinburgh


ncbi_country: China

ncbi_isolation_source: gut microbiota

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_organism_name: Candidatus Onthoplasma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Christensenellales;f__Christensenellaceae;x__Christensenellaceae incertae sedis;g__Candidatus Onthoplasma;x__unclassified Candidatus Onthoplasma;s__Candidatus Onthoplasma sp.


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Thermoanaerobaculaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


gtdb_type_species_of_genus: t

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: USA: Madison; Wisconsin

ncbi_isolation_source: Culture tube

ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: IFF Health & Biosciences


ncbi_organism_name: Mesorhizobium sp. M0955

ncbi_submitter: Washington State University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Marinomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guangzhou;Guangdong

ncbi_isolation_source: River

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sun Yat-sen University


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: intestinal content

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: ChinaCDC


ncbi_organism_name: Propionibacteriaceae bacterium Y2011

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Actinomadura livida

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Denmark

ncbi_isolation_source: Scotch pine

ncbi_strain_identifiers: BGSC 4BY1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar sylvestriensis


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Minnesota


ncbi_country: Italy: S. Piero a Sieve

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Bacteroides sp. CAG:770

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Weissella sp.


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Thiocyanate bioreactor

ncbi_organism_name: Comamonas sp. SCN 67-35

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_assembly_name: Rumen uncultured genome RUG12080

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: Umea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Halanaerobium sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Pseudomonas neuropathica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Birmingham


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antwerp


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Cytobacillus firmus


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lysobacter sp.


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Erwiniaceae bacterium CAU 1747

ncbi_submitter: Chung-Ang University


ncbi_organism_name: uncultured Polyangiaceae bacterium


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Nitrospiria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Holden; MA

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Rubritalea spongiae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: Propionibacteriaceae bacterium Y2011

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Dialister invisus


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: EMG


ncbi_country: Italy: PA Bolzano

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Azienda Sanitaria dell'Alto Adige


ncbi_country: Egypt

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Faculty of Pharmacy, Cairo University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Tang lab


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Oceanobacter kriegii DSM 6294

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Antarctica: King George Island

ncbi_organism_name: Aeromicrobium sp. A1-2

ncbi_submitter: Polar Research Institute of China


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V22_P2S10T140

ncbi_submitter: Instituto de ecologia


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: American Samoa

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Symploca sp. SIO1C2

ncbi_submitter: UCSD


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Poland

ncbi_isolation_source: rectal swab

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Photobacterium halotolerans


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0706

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Plantibacter sp. ME-Dv--P-122b

ncbi_submitter: University of Chicago


ncbi_country: India: Bay of Bengal; off the coast of Gopalpur

ncbi_organism_name: Planococcus plakortidis

ncbi_submitter: University of Malaya


ncbi_organism_name: Streptomyces sp. NBC_00464

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: freshwater MAG --- Ki3-D2_bin-1766

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Amycolatopsis sp. cmx-4-31

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: South Korea: Cheongju

ncbi_isolation_source: soil sediment

ncbi_organism_name: Herbaspirillum chlorophenolicum

ncbi_submitter: INCT FOR BIOLOGICAL NITROGEN FIXATION


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3632

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: South Africa

ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: NCPPB 889

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter sp. 88816

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 88816


ncbi_country: Taiwan

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: Academia Sinica


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Parolsenella catena


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Guerande

ncbi_isolation_source: hypersaline coastal mats

ncbi_organism_name: Roseofilum halophilum BLCC-M91

ncbi_submitter: University of Florida


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Dongguan Tungwah Hospital


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_country: India

ncbi_isolation_source: soil sample

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Sardar Patel University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Escherichia coli KTE3

ncbi_submitter: Broad Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Helmholtz Center Munich


ncbi_organism_name: Bacillus benzoevorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: IN

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus toyonensis


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Central Florida


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China:Changchun;Zuojia Zhen

ncbi_isolation_source: animal droppings

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Graduate School of Chinese Academy of Agricultural Sciences


ncbi_country: USA: California

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UCI 58

ncbi_strain_identifiers: UCI 58


ncbi_country: China: Dongguan

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 17E624

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Northeastern University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_country: USA: Berkley; California

ncbi_isolation_source: Mesocom

ncbi_organism_name: Enterobacter hormaechei


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: The Johns Hopkins University Applied Physics Laboratory


ncbi_country: Antarctica

ncbi_isolation_source: humic substance-rich maritime tundra soil

ncbi_organism_name: Pseudomonas sp. PAMC 29040

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori GAM249T

ncbi_submitter: Washington University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Winogradskya consettensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 87 (4-5977630)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 87 (4-5977630)


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_submitter: PARUL UNIVERSITY


ncbi_country: Australia: Adelaide; Flinders University campus

ncbi_organism_name: Actinopolymorpha pittospori

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Austria: Upper Austria; Danube

ncbi_isolation_source: river water

ncbi_strain_identifiers: KpWDA

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: China: Jiangsu

ncbi_organism_name: Acinetobacter sp. YH12119

ncbi_submitter: South China Agricultural University


ncbi_country: United Arab Emirates

ncbi_isolation_source: urine

ncbi_submitter: UQ


ncbi_organism_name: Diaphorobacter nitroreducens


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MS

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus aureus DAR3859


ncbi_organism_name: Actinoplanes sp. GCM10030250

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Texas

ncbi_isolation_source: hydraulic fracturing flowback water

ncbi_organism_name: Marinobacter sp. G11

ncbi_submitter: Michigan Technological University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Baskent University Medical Faculty


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China

ncbi_isolation_source: agricultural seawater

ncbi_organism_name: Sneathiella limimaris

ncbi_submitter: Third Institute of Oceanography


ncbi_assembly_name: Rumen uncultured genome RUG10833

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: BLOOD

ncbi_submitter: SC


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; high temperature high CO2

ncbi_organism_name: Candidatus Hopanoidivorans cymbastelae

ncbi_submitter: Australian Institute of Marine Science


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Proteus terrae

ncbi_submitter: City University of Hong Kong


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Singapore

ncbi_isolation_source: Subtidal Marine Sponge

ncbi_organism_name: Bacillus sp. 005/A4HT-01/001

ncbi_submitter: National Institute of Education

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 005/A4HT-01/001


ncbi_country: Malaysia

ncbi_isolation_source: Mangrove

ncbi_organism_name: Sinomonas humi

ncbi_strain_identifiers: MUSC 117

ncbi_submitter: University of Malaya


ncbi_organism_name: Aliiroseovarius sp. S253

ncbi_submitter: Shenzhen University


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Germany

ncbi_isolation_source: water

ncbi_organism_name: Lelliottia aquatilis

ncbi_submitter: Justus-Liebig University


ncbi_organism_name: Ruminococcus sp. SR1/5

ncbi_submitter: MetaHIT


ncbi_organism_name: Streptomonospora wellingtoniae

ncbi_submitter: Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_organism_name: Acinetobacter radioresistens


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_submitter: Swiss Tropical and Public Health Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut tissue

ncbi_organism_name: Gilliamella sp. ESL0232

ncbi_submitter: University of Lausanne


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R17(2017)

ncbi_submitter: University of Sao Paulo


ncbi_country: France: Camargue

ncbi_organism_name: Pectobacteriaceae bacterium C52

ncbi_submitter: CNRS UMR5240


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: sea water

ncbi_organism_name: marine gamma proteobacterium HTCC2089

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__K189A clade;s__marine gamma proteobacterium HTCC2089


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Gemmiger faecavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;s__Candidatus Gemmiger faecavium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudarthrobacter polychromogenes

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Alsea Valley; Benton Co.; OR

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: USDA


ncbi_isolation_source: Albacore tuna-anal vent

ncbi_organism_name: Photobacterium angustum

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Synechocystis sp.

ncbi_submitter: Rutgers University


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: Water Quality Control Lab, Division of Environmental Engineering, Faculty of Engineering, Hokkaido University


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Fusobacterium ulcerans

ncbi_submitter: University of Chicago


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom: England

ncbi_isolation_source: Ascitic fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_country: USA: South Dakota

ncbi_isolation_source: field isolate

ncbi_organism_name: Brucella abortus 84-0928

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_isolation_source: urine

ncbi_submitter: Swansea University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Escherichia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: SurvCARE


ncbi_organism_name: Ruminococcus champanellensis

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: burned soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Enterobacteriaceae bacterium B14

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminobacter sp.


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Switzerland: Lake Zurich; 5 m depth

ncbi_organism_name: Candidatus Planktophila versatilis

ncbi_submitter: University of Zurich

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila versatilis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila versatilis


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Marmoricola sp. OAE513

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Hokkaido; Tobetsu-cho

ncbi_organism_name: Veillonella sp. S13053-19

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_organism_name: Streptomyces paradoxus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: infection

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: France: Marseille

ncbi_organism_name: Faecalibacterium sp. Marseille-Q3530

ncbi_submitter: Institut hospitalo-universitaire en maladies infectieuses de Marseille


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Pseudomonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Lachnospira eligens


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Angelakisella sp.


ncbi_organism_name: Flavobacteriaceae bacterium GF1

ncbi_submitter: Department of Marine Bioscience Atomosphere and Ocean Research Institute, The University of Tokyo


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: Lysinibacillus odysseyi

ncbi_strain_identifiers: 34 hsl

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Seoul National University


ncbi_organism_name: Streptomyces nitrosporeus


ncbi_organism_name: Xanthomonas campestris pv. armoraciae

ncbi_strain_identifiers: WHRI 6376

ncbi_submitter: University of Warwick


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: uncultured Arcobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: McGill University


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus cereus group sp. BC3

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC3


ncbi_organism_name: Marinoscillum luteum

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Deqing People's Hosipital


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Cyanobacteria bacterium J06643_5

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06643_5


ncbi_organism_name: Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- Day6-2_bin-572

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Dietzia psychralcaliphila

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Thomasclavelia sp.


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Polynucleobacter brandtiae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Manitoba


ncbi_country: China: Harbin

ncbi_isolation_source: soil

ncbi_organism_name: Nonomuraea lactucae

ncbi_submitter: School of life science


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Nigeria: Osun State; Ede

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella quasivariicola

ncbi_submitter: African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University


ncbi_organism_name: uncultured Lachnoanaerobaculum sp.

ncbi_submitter: EMG


ncbi_country: Czech Republic

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Legionella sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_country: Japan

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Bacteriology, Graduate School of Medicine, Gunma University


ncbi_organism_name: Cereibacter sphaeroides 2.4.1

ncbi_submitter: Broad Institute


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0072


ncbi_country: Mexico

ncbi_isolation_source: urine

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_isolation_source: chicken waste

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Piscinibacter sp.

ncbi_submitter: Aalborg University


ncbi_assembly_name: Rumen uncultured genome RUG14696

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Terriglobales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Shewanella vesiculosa

ncbi_submitter: MacLea Laboratory


ncbi_country: USA: Lake Erie

ncbi_organism_name: Cellulophaga sp. BC115SP

ncbi_submitter: University of Toledo


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Instituto de Quimica


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: National University of Singapore


ncbi_assembly_name: freshwater MAG --- MJ110830B_bin-146

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Georgia


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Thermacetogenium sp. UBA4966

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- MJ110830A_bin-404


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: University of Technology Sydney


ncbi_country: China: Jilin

ncbi_organism_name: Bifidobacterium polysaccharolyticum

ncbi_submitter: China Agricultural University


ncbi_country: USA: University of Pittsburgh Medical Center; Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Baylor College of Medicine


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriaceae bacterium UBA4033


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Furfurilactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MD

ncbi_isolation_source: Dietary Supplements

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Porphyromonadaceae bacterium UBA7095


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Okinawa Prefectural Institute of Health and Environment


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: San Leandro; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Egerieousia excrementavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Egerieousia;s__Candidatus Egerieousia excrementavium


ncbi_country: China

ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus safensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Priestia flexa

ncbi_submitter: Leading Biological and Agricultural Limited Company


ncbi_organism_name: Neisseria meningitidis 2005172

ncbi_submitter: IGS


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cardiff University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Brachybacterium paraconglomeratum

ncbi_submitter: Nanjing University


ncbi_country: Kenya

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: MMUST biological


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: Unknown

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 68.U.05


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: Switzerland

ncbi_submitter: University of Bern


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: USA: Morgantown

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: West Virginia University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Throat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Canada: Calgary

ncbi_isolation_source: rectal swab

ncbi_submitter: Calgary Laboratory Services


ncbi_country: USA: Ohio

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_submitter: Karolinska Institute


ncbi_submitter: Hangzhou Medical College


ncbi_country: USA: WA

ncbi_submitter: US Food and Drug Administration


ncbi_country: Canada

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Candidatus Bathyarchaeia archaeon

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Archaea;x__Thermoproteati;p__Candidatus Bathyarchaeota;c__Candidatus Bathyarchaeia;x__unclassified Candidatus Bathyarchaeia;s__Candidatus Bathyarchaeia archaeon


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Traorella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA

ncbi_isolation_source: BAL

ncbi_organism_name: Pseudomonas aeruginosa BWHPSA046

ncbi_submitter: Broad Institute


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: SCAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Fusicatenibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Slovenia

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: DGA CBRN Defence Center


ncbi_country: Sudan: Khartoum; Ibrahim Malik Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Olleya sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Streptococcus suis

ncbi_submitter: VASIB: Verringerung des Einsatzes von Antibiotika in der Schweinehaltung durch Integration epidemiologischer Informationen aus klinischer, hygienischer, mikrobiologischer und pharmakologischer tierärztlicher Beratung - Reduction of antibiotic


ncbi_country: Ireland

ncbi_isolation_source: Dairy

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University College Cork


ncbi_assembly_name: IMG-taxon 2700988714 annotated assembly

ncbi_organism_name: Actinomadura meyerae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Saccharicrinis sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_organism_name: Bifidobacteriaceae bacterium MCC02033

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_country: United Kingdom

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Bath


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 287


ncbi_submitter: Center for Life Sciences, National Laboratory Astana, Nazarbayev University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: Max Planck Institute for Evolutionary Biology


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_submitter: International Tuberculosis Research Center


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Apilactobacillus kunkeei

ncbi_submitter: China Agricultural University


ncbi_isolation_source: artisanal dairy product

ncbi_submitter: Danone Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei;sb__Lacticaseibacillus paracasei subsp. paracasei;x__Lacticaseibacillus paracasei subsp. paracasei Lpp14


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_isolation_source: human skin

ncbi_organism_name: Mycolicibacterium obuense

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: wheat rhizosphere from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-R-24

ncbi_submitter: Rothamsted Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Veillonella sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: East China Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Metabacillus sediminilitoris

ncbi_submitter: Shanghai Ocean University


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany

ncbi_isolation_source: environment

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Gracilimonas sp.

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_organism_name: Cyanobacteria bacterium P01_H01_bin.105

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_H01_bin.105


ncbi_country: Ecuador: Quito

ncbi_submitter: Universidad San Francisco de Quito


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Japan: Osaka

ncbi_isolation_source: activated sludge

ncbi_organism_name: Sphingomonas sp. IC081

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: China: Hubei

ncbi_isolation_source: lung

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Coxiella sp.


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC006386

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: PA

ncbi_isolation_source: animal

ncbi_organism_name: Prescottella equi

ncbi_submitter: Penn State University


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Cyanobium sp. PLM2.Bin73

ncbi_submitter: University of Calgary


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea water

ncbi_organism_name: Marinibacterium profundimaris

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Balneolaceae bacterium UBA5089

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__unclassified Balneolaceae;s__Balneolaceae bacterium UBA5089


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: IN

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Fusobacterium varium

ncbi_submitter: EMG


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Enterobacter sp. EC_62

ncbi_submitter: University of Ibadan, Nigeria


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Caulobacter sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: infected rice leaf

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Guangxi University


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: bacterium

ncbi_submitter: GNS Science


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Galway


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: North South University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__environmental samples;s__uncultured Candidatus Saccharimonadales bacterium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Kitasatospora sp. NPDC058201

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Alcaligenes aquatilis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Rhodanobacteraceae bacterium


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: [Clostridium] innocuum


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_isolate: Passages #2 and #5

ncbi_organism_name: Hydrogenophaga sp. BL-A-41-H2

ncbi_strain_identifiers: Passages #2 and #5

ncbi_submitter: Boudreau Lab


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Cadiz


ncbi_organism_name: uncultured Sangeribacter sp.


ncbi_organism_name: Streptomyces sp. NPDC001914


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Aquaticitalea sp.

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: Chryseotalea sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Bacteroides nordii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Borkfalkia ceftriaxoniphila


ncbi_organism_name: Serratia sarumanii

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_strain_identifiers: CFBP 3388

ncbi_submitter: Universidad Publica de Navarra

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: East China Normal University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-07191

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Treponema sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: gut metagenome

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Argentina: Cordoba; Oncativo

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Centro de Investigaciones y Transferencias, Universidad Nacional de Villa Maria (CIT-CONICET)


ncbi_isolate: AOP1_A1_surf _bin _13

ncbi_organism_name: Enterococcus viikkiensis

ncbi_strain_identifiers: AOP1_A1_surf _bin _13

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacterium pyruvativorans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Northeastern University


ncbi_isolation_source: human gut

ncbi_organism_name: Collinsella sp. AF02-46-1

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Brazil: Bahia

ncbi_isolation_source: cocoa fermentation

ncbi_organism_name: Acetobacter senegalensis

ncbi_submitter: Faculdade de Ciencias Farmaceuticas de Ribeirao Preto


ncbi_country: Brazil

ncbi_submitter: Faculty of Pharmacy - U. Porto


ncbi_country: Greece: Chalcis

ncbi_isolation_source: Chicken breast conveyor belt

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Northumbria University


ncbi_assembly_name: freshwater SAG --- RF-1857-SP43-464-A3_S5

ncbi_isolation_source: freshwater

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Madison; Wisconsin

ncbi_isolation_source: nasal lavage fluid

ncbi_organism_name: Rothia aeria

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Jinchen; Shanxi Province

ncbi_isolation_source: coal mine water

ncbi_organism_name: Pannonibacter carbonis

ncbi_submitter: China University of Petroleum


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O121:H19;x__Escherichia coli O121:H19 str. 2011C-3500


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Kenya

ncbi_organism_name: Treponema sp. UBA6326

ncbi_submitter: University of Queensland


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella;s__Legionella lansingensis;x__Legionella lansingensis DSM 19556 = ATCC 49751


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_country: USA: Black Creek Nat. Ref.; Vermont

ncbi_isolation_source: root nodule

ncbi_organism_name: Frankia sp. R82

ncbi_submitter: Texas State University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Eubacteriales Family XIII. Incertae Sedis bacterium


ncbi_organism_name: Epilithonimonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Veillonella parvula


ncbi_organism_name: Acidaminococcus fermentans


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: New Zealand: Waikato

ncbi_organism_name: Legionella micdadei

ncbi_submitter: University of Canterbury


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Nocardia amikacinitolerans


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Technische Universiteit Delft


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: IA


ncbi_isolation_source: URINE

ncbi_organism_name: Klebsiella pneumoniae BIDMC 18B

ncbi_strain_identifiers: BIDMC 18B

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae BIDMC 18B


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Madagascar: Sud-Ouest Pointe Barrow

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Dulcina madagascariensis)


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: marine sediment

ncbi_organism_name: Brevibacterium sp. H-BE7

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oxalobacter sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_strain_identifiers: Hangzhou

ncbi_submitter: Nilaparvata lugens Genome Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Arsenophonus;s__Candidatus Arsenophonus nilaparvatae;x__Candidatus Arsenophonus nilaparvatae str. Hanzhou


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Arizona

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Rariglobus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lactobacillus intestinalis


ncbi_country: Austria

ncbi_isolation_source: drain

ncbi_organism_name: Arthrobacter sp. BF1

ncbi_submitter: FFoQSI GmbH


ncbi_country: Greece: Larimna

ncbi_isolation_source: Artemia live feed

ncbi_organism_name: Vibrio sp. La 4.2.2

ncbi_submitter: Agricultural University of Athens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__unclassified Vibrio;s__Vibrio sp. La 4.2.2


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudomonas sp. AH2 (2023)

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Imported/domestic retail Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: mesophilic anaerobic digestion

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Xinjiang

ncbi_isolation_source: Cotton field soil

ncbi_organism_name: Streptomyces gossypii

ncbi_submitter: Nanjing Normal University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: SRCAMB


ncbi_submitter: BCO Bacterial Genomes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;x__Staphylococcus cohnii species complex;x__unclassified Staphylococcus cohnii species complex;s__Staphylococcus cohnii species complex 1637


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium sp. E136

ncbi_submitter: JCVI


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Roseburia sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: South Africa: Westen Cape

ncbi_isolation_source: Paediatrics (haematology)

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Pseudomonas sp. NA13

ncbi_submitter: Institute of Vegetables and flowers


ncbi_organism_name: Vibrio tubiashii ATCC 19109

ncbi_submitter: Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio oreintalis group;s__Vibrio tubiashii;x__Vibrio tubiashii ATCC 19109


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: NEW YORK UNIVERSITY SCHOOL OF MEDICINE


ncbi_assembly_name: IMG-taxon 2690315646 annotated assembly

ncbi_organism_name: Frankineae bacterium MT45

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Turkey

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Israel

ncbi_isolation_source: soil

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Broad Institute


ncbi_country: South Korea

ncbi_isolation_source: red alga

ncbi_organism_name: Alkalicoccobacillus porphyridii

ncbi_submitter: Chung-Ang University


ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Hallerella succinigenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Cobetia sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_submitter: University of Alberta


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Nankai University


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LAU


ncbi_country: Russia: Kazan

ncbi_isolation_source: feces from HP_010

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Marinicella sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: India

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Germany

ncbi_submitter: Wroclaw University of Environmental and Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: China: Qinghai

ncbi_isolation_source: rectum

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NWAFU


ncbi_country: Russia

ncbi_isolation_source: groundwater

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oleiphilus sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: sewage

ncbi_submitter: SC


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: IMG-taxon 2663762719 annotated assembly

ncbi_organism_name: Sunxiuqinia elliptica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG13558

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-2928

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Hospital Universitario Son de Espases (Palma de Mallorca)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_country: Hungary: Siklos

ncbi_organism_name: Hydrogenophaga aromaticivorans

ncbi_submitter: Szent Istvan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: metagenome

ncbi_organism_name: Halothiobacillus neapolitanus

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Alloprevotella sp.


ncbi_assembly_name: JGI assembly

ncbi_organism_name: Candidatus Thermokryptus mobilis

ncbi_submitter: DOE - Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Kryptoniota;c__;o__;f__;g__Candidatus Thermokryptus;s__Candidatus Thermokryptus mobilis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;g__Candidatus Thermokryptus;s__Candidatus Thermokryptus mobilis


ncbi_country: USA: Ithaca; New York

ncbi_organism_name: Paenibacillus jamilae

ncbi_submitter: DOE Joint Genome Institute