ncbi_country: Czech Republic: Pardubice region

ncbi_isolation_source: collection strain

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: State Veterinary Institute Prague


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Germany

ncbi_genome_representation: full

ncbi_isolation_source: Wild bird

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Vibrio porteresiae

ncbi_submitter: Hokkaido University


ncbi_assembly_level: Scaffold

ncbi_country: USA: Maywood; IL

ncbi_organism_name: Gardnerella pickettii

ncbi_submitter: Loyola University Chicago


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Ear swab

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: University of Bern


gtdb_representative: t

ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Coleofasciculus sp. FACHB-T130

ncbi_submitter: South China Normal University


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Norway: Baerum

ncbi_isolation_source: Wastewater pump station

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


gtdb_type_species_of_genus: t

ncbi_isolation_source: Gingival margin

ncbi_organism_name: Lautropia mirabilis

ncbi_refseq_category: reference genome

ncbi_submitter: SC

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: CLUE-TERRA


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apis

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: faeces;Qinghai;China

ncbi_organism_name: Arthrobacter caoxuetaonis

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Russia: Krasnodar Krai; Gladkovsky mud volcano

ncbi_isolation_source: pool on the surface of a mud volcano

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Cycloclasticus pugetii

ncbi_submitter: University of East Anglia


ncbi_country: USA:Las Vegas

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Rikenellaceae bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0786

ncbi_submitter: Broad Institute


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium


ncbi_organism_name: Candidatus Nitrospira inopinata

ncbi_submitter: Department of Microbiology and Ecosystem Science, University of Vienna


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Porphyromonadaceae bacterium UBA3321


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Washington State University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: New York

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: University of Chicago


ncbi_country: China: Guangdong

ncbi_isolation_source: beach

ncbi_organism_name: Demequina lignilytica

ncbi_strain_identifiers: SYSU T0a273

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: Mexico

ncbi_isolation_source: Coriander

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000208


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Poland: Lublin

ncbi_organism_name: Legionella lytica

ncbi_submitter: UMCS


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: Denmark

ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Lachnospiraceae bacterium UBA1755

ncbi_submitter: University of Queensland


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cepheid


ncbi_country: Brazil: Abrolhos

ncbi_organism_name: Vibrio rhodolitus

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: uncultured Undibacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_isolation_source: cecal sample

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Geotalea uraniireducens Rf4

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Sungiibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Sungiibacteriota;s__Candidatus Sungiibacteriota bacterium


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (MCD) from International Space Station

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: J.Craig Venter Institute


ncbi_organism_name: Streptomyces angustmyceticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Poland

ncbi_isolation_source: wound

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Fimadaptatus sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimadaptatus;x__unclassified Candidatus Fimadaptatus;s__Candidatus Fimadaptatus sp.


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Massilia sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Methylobacterium sp. B34

ncbi_submitter: Kazusa DNA Research Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: phyllosphere

ncbi_organism_name: Pseudomonas sp. S49

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland


ncbi_country: Denmark: Copenhagen

ncbi_submitter: Roskilde University


ncbi_organism_name: Caenibacillus caldisaponilyticus

ncbi_submitter: Kyoto Prefectural University


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Anaeroplasmataceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: rat gut

ncbi_organism_name: Ruminococcaceae bacterium UBA3315


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M20180

ncbi_submitter: Broad Institute


ncbi_country: France: Marseille

ncbi_isolation_source: rectal swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: IHU Mediteranee Infection


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Tsuneonella suprasediminis

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium RIFCSPHIGHO2_01_FULL_35_32


ncbi_country: China

ncbi_isolation_source: synovial fluid

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Zhengzhou University


ncbi_country: Brazil

ncbi_isolation_source: leaf

ncbi_strain_identifiers: IBSBF 2673

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. IBSBF 2673


ncbi_organism_name: Nevskiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Sri Lanka

ncbi_isolation_source: vaginal swab pre-delivery

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Terryibacteriota;s__Candidatus Terrybacteria bacterium RIFCSPLOWO2_01_FULL_58_14


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_organism_name: Aminipila sp.


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_organism_name: Burkholderia ambifaria MEX-5

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_assembly_name: IMG-taxon 2619619030 annotated assembly

ncbi_organism_name: Aliiroseovarius crassostreae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: USFDA


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Henan Agricultural University


ncbi_country: Mali

ncbi_submitter: Broad Institute


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Portland State University


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: respiratory tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Chlorobium antarcticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Italy

ncbi_isolation_source: ready to eat food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_country: Thailand: Trang

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Treponema sp.


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: UNESP-FCAV


ncbi_country: India: Maharashtra

ncbi_isolation_source: soda lake

ncbi_organism_name: Georgenia satyanarayanai

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: FSBI "Centre for Strategic Planning" of FMBA of Russia


ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Sulfurimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Enterococcus sp. DIV0841a

ncbi_submitter: Broad Institute


ncbi_organism_name: Paenarthrobacter sp. NPDC057355

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Staphylococcaceae bacterium


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_organism_name: Lacunisphaera sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: Lachnospirales bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: NNEfae 2894


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Hominisplanchenecus sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China: Anhui; Tongling

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_organism_name: Thermoanaerobacteraceae bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: OPISTHori

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_organism_name: Streptomyces humidus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_organism_name: Eubacteriales bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA

ncbi_isolation_source: Vulva

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Malaysia: Johor

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Mangrovimonas sp. CR14

ncbi_submitter: FACULTY OF SCIENCE, UNIVERSITI TEKNOLOGI MALAYSIA


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_isolation_source: lake water

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Urinary tract

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Vibrio ichthyoenteri ATCC 700023

ncbi_submitter: FDA


ncbi_organism_name: Streptomyces sp. SID5785

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of California, Berkeley


ncbi_country: Malaysia: Kuala Lumpur; Gombak River

ncbi_isolation_source: river water

ncbi_submitter: Tsukuba University


ncbi_organism_name: Streptomyces sp. SX92

ncbi_submitter: Henan University of Science and Technology


ncbi_organism_name: Streptomyces fumanus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Kitasatospora sp. NPDC048538

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Streptomyces rubiginosohelvolus


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Farm environmental

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: Universidad Nacional Autonoma de Mexico. Centro de Ciencias Genomicas


ncbi_country: Australia: Melbourne

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_country: South Korea

ncbi_isolation_source: fermented soybean paste (doenjang)

ncbi_organism_name: Mammaliicoccus lentus F1142

ncbi_submitter: Korea Food Research Institute


ncbi_isolation_source: skin

ncbi_organism_name: Mycobacterium ulcerans str. Harvey

ncbi_strain_identifiers: Harvey

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium ulcerans group;s__Mycobacterium ulcerans;x__Mycobacterium ulcerans str. Harvey


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: kimchi

ncbi_organism_name: Weissella cibaria

ncbi_submitter: World Institute of Kimchi


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: PA

ncbi_isolation_source: rectum (Canis lupus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: University of Bern


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. TMT1-2-2

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep sea mooring chain biofilm

ncbi_organism_name: Desulfocapsa sp.

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Palmer LTER


ncbi_submitter: NCTR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Japan

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: sediment

ncbi_organism_name: Priestia flexa

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium UBA6228


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: France

ncbi_isolation_source: PACA; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_country: Finland

ncbi_isolation_source: freshwater

ncbi_organism_name: Planktothrix agardhii NIVA-CYA 126/8

ncbi_strain_identifiers: 8;NIVA-CYA 126

ncbi_submitter: Institute for Limnology


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Acetivibrionales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_country: China

ncbi_organism_name: Salmonella sp. 2021-43

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sandaracinus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Michigan

ncbi_isolation_source: Residence shower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Veillonella atypica KON

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: animal manure

ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Chinese Academy of Science


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 155


ncbi_organism_name: Gallibacterium anatis

ncbi_strain_identifiers: SCPM-O-B-15497 (Shiryaevo PSK-6)

ncbi_submitter: SRCAMB


ncbi_country: Belgium: Comblain-au-Pont

ncbi_isolation_source: cave

ncbi_organism_name: Streptomyces lunaelactis

ncbi_submitter: Center for Protein Engineering


ncbi_isolation_source: Faeces


ncbi_submitter: KRIBB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus sonorensis;x__Bacillus sonorensis NBRC 101234 = KCTC 13918


ncbi_organism_name: Streptomyces decoyicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,12:d:-


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Sphingobium yanoikuyae

ncbi_strain_identifiers: A-TP

ncbi_submitter: Carlos Chagas Filho Institute of Biophysics


ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: Hacettepe University


ncbi_country: Indonesia: Bogor

ncbi_isolation_source: Indonesian Tempeh

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_strain_identifiers: II EMP3

ncbi_submitter: Atma Jaya Catholic University of Indonesia


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Coxiella burnetii Cb185

ncbi_submitter: ebi


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France:French Brittany

ncbi_isolation_source: patient clinical isolate

ncbi_submitter: Houston Methodist Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: EMG


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: uncultured Solobacterium sp.


ncbi_country: USA: Boston; MA along the Charles River

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of British Columbia


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolate: SPRUCE 266

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_strain_identifiers: SPRUCE 266

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Granulicatella sp.


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: AnHui

ncbi_organism_name: Pandoraea sp. XJJ-1

ncbi_submitter: East China University of Science and Technology


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Spain: Santa Cruz de Tenerife

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Mesorhizobium ciceri WSM4083

ncbi_submitter: JGI


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: BEI Resources


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus

ncbi_submitter: BGI


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:552

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:552


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University First Hospital


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Italy

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: USA: New York City

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_isolation_source: cave community

ncbi_organism_name: Brachybacterium paraconglomeratum LC44

ncbi_submitter: Michael G. DeGroote Institute for Infectious Disease Research


ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_country: India: Uttar Pradesh

ncbi_isolation_source: chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: National Health Research Institutes


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_organism_name: Helicobacter pylori NQ315

ncbi_submitter: MHH Hannover Medical School


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: sediment

ncbi_organism_name: Nitratireductor pacificus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Czech Republic

ncbi_isolation_source: rectum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Janibacter sp. Y6

ncbi_submitter: Chulalongkorn University


ncbi_country: USA: Tennessee

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Colorado State University


ncbi_country: China

ncbi_isolation_source: hyperthermophilic anaerobic system

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: India

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus VP250

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus VP250


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Malaysia

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Malaya


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Germany

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolate: Butyricicoccus pullicaecorum_25.3(T)

ncbi_isolation_source: chicken intestinal content

ncbi_organism_name: Butyricicoccus pullicaecorum

ncbi_strain_identifiers: Butyricicoccus pullicaecorum_25.3(T)

ncbi_submitter: Ghent University-Faculty of Veterinary medicine


ncbi_assembly_name: freshwater MAG --- KR2_bin-0225

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Kvitko Lab


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: China: Fangchenggang City; Guangxi Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_submitter: KAUST


ncbi_organism_name: Synechococcus sp. H55.8

ncbi_submitter: University of Montana


ncbi_submitter: University of Lethbridge


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Succinatimonas sp.

ncbi_submitter: EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Tenacibaculum xiamenense

ncbi_submitter: INRA


ncbi_isolation_source: Effluent treatment plant

ncbi_organism_name: Exiguobacterium alkaliphilum 12/1

ncbi_submitter: CSIR-IGIB, New Delhi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium alkaliphilum;x__Exiguobacterium alkaliphilum 12/1


ncbi_organism_name: Terrimesophilobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Litorivicinus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Solibacillus sp. FSL W7-1472

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Solibacillus;x__unclassified Solibacillus;s__Solibacillus sp. FSL W7-1472


ncbi_country: USA

ncbi_isolation_source: probiotic prodcut

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Evolve Biosystems Inc.


ncbi_organism_name: Tolypothrix campylonemoides VB511288_2

ncbi_submitter: Indian Institute Of Chemical biology


ncbi_country: Japan

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Meijo University faculty of pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterobacter sp. BWH 37

ncbi_strain_identifiers: BWH 37

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. BWH 37


ncbi_organism_name: Limimaricola sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: Hheil

ncbi_organism_name: Helicobacter heilmannii

ncbi_submitter: UGENT


ncbi_organism_name: Blastococcus sp.

ncbi_submitter: Zhejiang University


ncbi_isolate: Psychrobacter immobilis NCIMB362

ncbi_isolation_source: gills of Lethrinus nebulosus

ncbi_organism_name: Psychrobacter immobilis

ncbi_strain_identifiers: Psychrobacter immobilis NCIMB362

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Shanghai

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Planktothrix sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Kenya: Kisumu

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Pseudomonas viridiflava


ncbi_country: China: Lu Zhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SOUTHWEST MEDICAL UNIVERSITY


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Pseudoxanthomonas winnipegensis

ncbi_submitter: University of Fribourg


ncbi_isolate: AOP1_B1_surf _bin _7

ncbi_organism_name: Neisseriaceae bacterium

ncbi_strain_identifiers: AOP1_B1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FFoQSI


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Neolewinella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas solani

ncbi_submitter: Center for Biological Research Margarita Salas, CSIC


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Exiguobacterium mexicanum

ncbi_submitter: Shandong First Medical University & Shandong Academy of Medical Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium mexicanum


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_organism_name: Streptomyces avermitilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas sp. UV AK001

ncbi_strain_identifiers: UV AK001

ncbi_submitter: Central University of Kerala


ncbi_organism_name: uncultured Terracidiphilus sp.


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 3360

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Streptomyces sp. cg28

ncbi_submitter: Hunan University of Science and Technology


ncbi_organism_name: Streptomyces sp. NPDC001568


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: New Zealand: Campbell Island

ncbi_isolation_source: water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Massey University


ncbi_isolation_source: human gut

ncbi_organism_name: Provencibacterium massiliense


ncbi_organism_name: Escherichia coli

ncbi_submitter: Iowa State University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Russia: Moscow

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Desulfatitalea sp. UBA4791

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: river water

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: NSU Genome Research Institute (NGRI), North South University


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Thermogemmatispora sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Kitasatospora sp. Root187

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_isolation_source: anammox granule sludge

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Chongqing university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14345

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Clostridioides difficile P59

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Cheese

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 4b;x__Listeria monocytogenes serotype 4b str. 02-1792


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_organism_name: Staphylococcus aureus M1104

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG14809

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: cold seep

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: USA: California

ncbi_isolation_source: rectal swab from healthy college student

ncbi_submitter: Santa Clara University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Melbourne

ncbi_isolation_source: respiratory

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_country: South Africa:Cape Town

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: East China University of Science and Technology


ncbi_country: France: Besancon

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: Germany

ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_isolation_source: Human

ncbi_organism_name: Achromobacter piechaudii

ncbi_submitter: GHENT UNIVERSITY


ncbi_country: France

ncbi_organism_name: Borreliella valaisiana

ncbi_submitter: INRAe


ncbi_country: China: Beijing

ncbi_isolation_source: bile

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Caminibacter pacificus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Buchnera aphidicola (Formosaphis micheliae)

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_isolation_source: sludge

ncbi_organism_name: Methylocystis echinoides

ncbi_submitter: Soil Biology and Chemistry, Department of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0378

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: BILS


ncbi_country: Japan: Miyazaki city

ncbi_isolation_source: Kaeda river; Miyazaki; Japan

ncbi_organism_name: Grimontia kaedaensis

ncbi_submitter: University of Miyazaki


ncbi_isolation_source: mammary gland

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Spirosoma telluris

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Bengbu

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Geobacter sp.


ncbi_organism_name: Lacticaseibacillus casei

ncbi_submitter: University of Life Sciences in Lublin


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Monschaui


ncbi_country: Italy: Trento; Comano Thermal Spring

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Candidatus Troglogloeales bacterium

ncbi_submitter: University of Trento

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Candidatus Troglogloeales;x__unclassified Candidatus Troglogloeales;s__Candidatus Troglogloeales bacterium


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eubacterium ventriosum


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Psychrobacter sp. TB20-MNA-CIBAN-0197

ncbi_submitter: University of Florence


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: Photorhabdus cinerea

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Cryomorphaceae;x__unclassified Cryomorphaceae;s__Cryomorphaceae bacterium BACL23 MAG-120924-bin60


ncbi_organism_name: Nocardiopsis sp. NPDC058789

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: California Department of Public Health


ncbi_submitter: University of Lethbridge


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Dehalobacter sp. DCM

ncbi_strain_identifiers: DCM

ncbi_submitter: Institute of Applied Ecology (CAS)


ncbi_country: China: Guangzhou; Guangdong

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanfang Hospital


ncbi_isolation_source: clinical

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Paraburkholderia caffeinilytica

ncbi_submitter: University of Illinois at Chicago


ncbi_country: Australia

ncbi_isolation_source: Pinot Noir

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_isolate: Urine

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STw 69;STp 3;NILS50:D;O15:H18;Urine

ncbi_submitter: UMR 1137 IAME


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Bacillus mycoides


ncbi_country: USA: Iowa

ncbi_submitter: USDA


ncbi_country: United Kingdom: Yorkshire and the Humber

ncbi_submitter: REHAB


ncbi_country: South Korea

ncbi_isolation_source: Liver and spleen

ncbi_organism_name: Escherichia coli O1:K1:H7

ncbi_strain_identifiers: APEC E16002

ncbi_submitter: Seoul National University


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Avelusimicrobium faecicola


ncbi_country: Canada: Farnham; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Italy

ncbi_isolation_source: environmental swab sponge dairy facility blue cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Poultry

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPHIGHO2_02_FULL_42_12


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0305260.5

ncbi_submitter: IGS


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Enterobacter cancerogenus

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: Russia: Moscow

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Research Institute for Plague Control


ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Sheba Medical Center


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces rimosus subsp. rimosus

ncbi_strain_identifiers: NRRL B-2660

ncbi_submitter: University of Illinois


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad de Zaragoza, Facultad de Veterinaria


ncbi_organism_name: Staphylococcus lugdunensis


ncbi_country: South Korea: Daepo Beach; Yellow Sea

ncbi_isolation_source: tidal flat; seawater

ncbi_organism_name: Marinobacter flavimaris

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_country: Germany: Jena

ncbi_isolation_source: rectal swab neonate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jena University Hospital


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: caecum

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Veterinary Research Institute


ncbi_country: Germany

ncbi_isolation_source: milk powder

ncbi_organism_name: Anoxybacillus flavithermus

ncbi_submitter: Technical University Munich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway

ncbi_isolation_source: Tracheal secretion

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_42_14


ncbi_country: USA: Florida; Tampa

ncbi_isolation_source: Patient stools

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of South Florida


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Thiofilum sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: Lamb

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni


ncbi_isolation_source: metagenome

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: addis ababa university


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Finland

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactococcus cremoris


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus AGEN6042

ncbi_submitter: Broad Institute


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Desertifilum sp. FACHB-1129

ncbi_submitter: South China Normal University


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: USA: North Carolina

ncbi_organism_name: Caballeronia sp. TF1N1

ncbi_submitter: University of Texas at Arlington


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_country: USA: WA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: Candidatus Methylopumilus planktonicus

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Uppsala University


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2700988688 annotated assembly

ncbi_organism_name: Fibrobacter sp. UWEL

ncbi_strain_identifiers: UWEL

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea: Jeju

ncbi_isolation_source: cabbage

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Gachon University


ncbi_organism_name: Arthrobacter rhombi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli


ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_organism_name: Desulfurella sp.

ncbi_submitter: The University of Auckland


ncbi_organism_name: Pseudomonas trivialis

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_isolation_source: invasive

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC077G12

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Serratia sp. CY83950

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY83950


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces lavendulae subsp. lavendulae

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Japan

ncbi_organism_name: Olsenella sp. GAM18

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Waterloo


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Chemisches und Veterinaeruntersuchungsamt Stuttgart


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Yale University


ncbi_organism_name: Acidobacteriota bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter sp. 22452

ncbi_submitter: Yantai University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Fibrobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Cyanobacteriota bacterium


ncbi_organism_name: Glutamicibacter protophormiae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Salamanca


ncbi_organism_name: Bacillus cereus group sp. BC7

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC7


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC012769

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_organism_name: Thermoguttaceae bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Elusimicrobiaceae bacterium


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Research Center of Biotechnology


ncbi_organism_name: Photorhabdus akhurstii subsp. bharatensis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin66

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_strain_identifiers: KAP bin66

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Streptomyces parvulus


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Streptomyces anulatus


ncbi_organism_name: Nitrospirota bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: South Africa: Westen Cape

ncbi_isolation_source: Paediatrics (neonatalogy)

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Sphingomonas oligophenolica

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hato


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Centro Universitario de la Cienega, Universidad de Guadalajara.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: Alphaproteobacteria bacterium bin95

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Enterococcus faecalis EnGen0341

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudoalteromonas sp. UBA846

ncbi_submitter: University of Queensland


ncbi_country: Hungary: Siklos

ncbi_isolation_source: Xylene degrading microaerobic enrichment culture from petroleum contaminated site

ncbi_organism_name: Geopseudomonas aromaticivorans

ncbi_submitter: Hungarian University of Agriculture and Life Sciences(Formerly Szent Istvan University)


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces sp. NPDC047829

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangzhou

ncbi_isolation_source: anal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: USA: New Hampshire

ncbi_isolation_source: transcending colon brush

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Micropruina sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Shenzhen

ncbi_organism_name: Eubacterium sp. AM46-8

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. AM46-8


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Leptolinea sp. HRD-7

ncbi_submitter: Applied Chemistry and Life Science, Toyohashi University of Technology


ncbi_organism_name: Candidatus Neomicrothrix sp. UBA4147

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA4147


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Michigan


ncbi_country: Bahamas

ncbi_organism_name: Nonlabens spongiae

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Randers

ncbi_isolation_source: activated sludge from Rand_18-Q3-R56-63

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: China: Hu Bei; Zhu Xi

ncbi_isolation_source: deep rotten corm

ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: South and Central University for Nationalities


ncbi_country: Canada: British Columbia

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_strain_identifiers: LI C6 FM3-F

ncbi_submitter: Vancouver Island University


ncbi_organism_name: Stenotrophomonas indicatrix

ncbi_submitter: Institute of Agrophysics, Polish Academy of Sciences


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Shanghai Ocean University


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus sp. IVB6233

ncbi_submitter: University of Bern


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_strain_identifiers: CF-Marseille

ncbi_submitter: Genomic Research Laboratory, Division of Infectious Diseases, Geneva University Hospitals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus str. CF-Marseille


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Alteromonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Ngtc CS 8

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: Suriname: Paramaribo

ncbi_isolation_source: Perineum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Durham; NH

ncbi_isolation_source: root nodules

ncbi_organism_name: Actinomadura sp. DC4

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Nanjing University


ncbi_country: Mali

ncbi_isolation_source: fermented cow milk

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Brigham Young University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Stockholm University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_submitter: Monash University


ncbi_isolation_source: Environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin swab

ncbi_organism_name: Micrococcus lylae

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: sputum from cystic fibrosis patients

ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: Universidade do Estado do Rio de Janeiro


ncbi_isolation_source: caecum

ncbi_organism_name: Anaerotruncus colihominis

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Laos

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Colorado State University


ncbi_assembly_name: Rumen uncultured genome RUG426

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_submitter: University of Barcelona


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Colon


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: China CDC


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Neokomagataea tanensis NBRC 106556

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: Germany: Konstanz

ncbi_isolation_source: dissected gut

ncbi_organism_name: Flavobacterium succinicans

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: EMG


ncbi_country: Germany: Lower Saxony

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: China: Shenyang

ncbi_isolation_source: lake water

ncbi_organism_name: Legionella septentrionalis

ncbi_submitter: kingMed Center for Clinical Laborary


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: wenzhou medical university


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics