ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field NE area of North Tower vent

ncbi_isolation_source: biosyringe of microbial iron mat on a black smoker

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: University of Bergen


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_assembly_level: Contig

ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_country: USA: New York

ncbi_isolation_source: environment; non-food

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: The Rockefeller University


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Tennessee

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Vanderbilt University Medical Center


gtdb_representative: t

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: Poland: Suwalki

ncbi_isolation_source: BAL

ncbi_organism_name: Streptococcus sp. 5004

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: EMG


ncbi_isolation_source: isolated from adult of Haemaphysalis hystricis

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: BGI


ncbi_organism_name: Loktanella salsilacus


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus sp. GDX8P99P

ncbi_submitter: South China Agricultural University


ncbi_country: China: Beijing

ncbi_isolation_source: mash of wine

ncbi_organism_name: Umezawaea beigongshangensis

ncbi_refseq_category: reference genome

ncbi_submitter: Beijing Technology and Business University


ncbi_isolation_source: human gut

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: China: Shanxi

ncbi_isolation_source: vinegar

ncbi_organism_name: Paenibacillus aceti

ncbi_submitter: South China University of Technology

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Bdellovibrio sp. HCB-162

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a composite leachate cistern at an active municipal landfill in Southern Ontario

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Netherlands

ncbi_isolation_source: Gut

ncbi_organism_name: Enterococcus faecium EnGen0035

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: Kansas

ncbi_isolation_source: Coalvale silty clay

ncbi_organism_name: Paenibacillus amylolyticus

ncbi_submitter: Pittsburg State University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Sphingomonas adhaesiva NBRC 15099

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Brazil: Continental slope off northeastern Brazil; 170 km from the coastline and 280 km to the north of the mouth of the Parnaiba River

ncbi_isolation_source: Sediment core

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: UFRJ


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_country: Canada: Calgary

ncbi_isolation_source: urinary infection

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universite Paris Sud


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Porticoccaceae bacterium UBA7411

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured bacterium


ncbi_country: Brazil: Bebedouro; Sao Paulo; SP

ncbi_isolation_source: Agricultural

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: USA: Riverside; Ca

ncbi_isolation_source: Nectary

ncbi_organism_name: Apilactobacillus timberlakei

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Rhodococcus coprophilus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: HRSE 12

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Olsenella uli

ncbi_submitter: EMG


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Photobacterium damselae

ncbi_submitter: Yellow Sea Fisheries Research Institute


ncbi_organism_name: Candidatus Poriferihabitaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Halomonas eurihalina

ncbi_submitter: University of Sevilla, Spain


ncbi_country: USA

ncbi_isolation_source: Uterus

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_country: Colombia: Norte de Santander

ncbi_isolation_source: Blood culture

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Wyoming


ncbi_assembly_name: IMG-taxon 2671180116 annotated assembly

ncbi_organism_name: Dethiosulfovibrio salsuginis

ncbi_strain_identifiers: USBA 82

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Thermogemmatispora sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Mississippi State University


ncbi_organism_name: Xanthomonas citri pv. malvacearum

ncbi_strain_identifiers: WHRI 5232

ncbi_submitter: The Xanthomonas Threats project

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. malvacearum

ncbi_type_material_designation: assembly from pathotype material


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: EMG


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: Richmond Mine ABmuck location

ncbi_organism_name: Leptospirillum ferriphilum

ncbi_submitter: University of Queensland


ncbi_country: USA: Canoe Beach; Nahant; MA

ncbi_isolation_source: Coastal ocean surface water

ncbi_organism_name: Maribacter sp. 6B07

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Indian Ocean

ncbi_isolation_source: seabed sediments

ncbi_organism_name: Gulosibacter sediminis

ncbi_submitter: Xizang minzu University


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: China

ncbi_isolation_source: Waste water treatment plant

ncbi_organism_name: Citrobacter sp. W5

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Actinobacillus sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 23037

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Serratia ficaria

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Canada: Alberta

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: University of Calgary


ncbi_country: South Korea

ncbi_isolation_source: fresh water

ncbi_organism_name: Mucilaginibacter celer

ncbi_submitter: Korea University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: Calakmul

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. KL109B

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: USA: ND

ncbi_isolation_source: waste water

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Kansas

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_assembly_name: IMG-taxon 2603880215 annotated assembly

ncbi_organism_name: Roseibaca calidilacus

ncbi_submitter: DOE - Joint Genome Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Germany: Luebeck

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: metagenome

ncbi_organism_name: Lachnoclostridium sp. An196

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shantou University Medical College


ncbi_organism_name: Escherichia coli

ncbi_submitter: APC Microbiome Ireland


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2639762508 annotated assembly

ncbi_organism_name: Vreelandella aquamarina

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: WS4435 final V2

ncbi_country: Germany: Kulmbach

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China agricultural university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: faecal

ncbi_submitter: SC


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL050PA3

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Cryomorphaceae bacterium


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_level: Chromosome

ncbi_country: Poland: Warsaw

ncbi_isolation_source: bronchial washing

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: Forschungszentrum Borstel, Germany


ncbi_organism_name: Acinetobacter ursingii


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: Environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: unverisity medical center groningen


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Selenomonas sp. F0473

ncbi_submitter: Broad Institute


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Korea: Yecheon

ncbi_isolation_source: Root endosphere

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Rural development administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Shanghai Public Health Clinical Center


ncbi_country: Paraguay: Paraguari

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Pseudacidovorax intermedius

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Singapore

ncbi_isolation_source: Field

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Thailand: Ubon

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-2542

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Lentimonas sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__Verrucomicrobiota incertae sedis;g__Lentimonas;x__unclassified Lentimonas;s__Lentimonas sp.


ncbi_country: Thailand

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: Universidad de Cadiz


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8749

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: uncultured Butyribacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Rhodoglobus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: France

ncbi_submitter: CHU de Bicetre


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_country: Zambia

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae CP1041(14)

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: California

ncbi_isolation_source: crown gall

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: USDA-ARS


ncbi_country: Japan

ncbi_organism_name: Pseudodesulfovibrio portus

ncbi_submitter: Fukui Prefectural University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: [Lactobacillus] timonensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Actinomycetaceae bacterium UMB8041A

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Nocardioides marinisabuli

ncbi_submitter: Yantai University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: New Zealand: Pukekohe

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: Desulfomonilia bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Holdemanella sp.


ncbi_country: Turkey: Bandirma

ncbi_isolation_source: Mucilage in the Sea of Marmara

ncbi_organism_name: Vibrio chagasii

ncbi_submitter: Bursa Uludag University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: Geneva University Hospitals


ncbi_country: Pacific Ocean: Queen Charlotte Sound

ncbi_organism_name: Shewanella metallivivens

ncbi_submitter: Bellevue University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: EMG


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Micrococcales bacterium 73-15

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Streptomyces glaucescens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Kitasatospora sp. NPDC059088


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; seawater

ncbi_organism_name: SAR116 cluster bacterium AG-335-B03

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium AG-335-B03


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Selenomonadaceae bacterium


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: UIUC


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_organism_name: Enterococcus sp. DIV1279b

ncbi_submitter: Broad Institute


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Thessaly


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Yale University


ncbi_organism_name: Escherichia sp. WS2659_2

ncbi_submitter: Center for Disease Control and Prevention


ncbi_submitter: Institut Pasteur


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: University of Minnesota


ncbi_organism_name: Achromobacter xylosoxidans


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Opitutaceae bacterium


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-02725

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- KR5_bin-306


ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Draconibacterium sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: uncultured Negativicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;x__environmental samples;s__uncultured Negativicutes bacterium


ncbi_organism_name: Candidatus Amphirhobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Tethybacterales;f__Candidatus Tethybacteraceae;g__Candidatus Amphirhobacter;x__unclassified Candidatus Amphirhobacter;s__Candidatus Amphirhobacter sp.


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Ruminococcus] lactaris


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence and no molasses

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolate: SPRUCE 29

ncbi_strain_identifiers: SPRUCE 29

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Alteromonas australica


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA:New Jersey; Wharton State Forest; Batona Field

ncbi_isolation_source: gut dissection

ncbi_organism_name: Spiroplasma attinicola

ncbi_submitter: University of Connecticut


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: South China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Leeuwenhoekiella nanhaiensis

ncbi_submitter: Tongji University


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: USA: MO

ncbi_isolation_source: stool sample of individual with bacteremia

ncbi_organism_name: Streptococcus agalactiae GBS11

ncbi_submitter: The Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_country: Russia: Kaluga

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_country: China: Beijing

ncbi_isolation_source: contaminated air [ENVO:01000676]

ncbi_organism_name: Tsuneonella aeria

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_organism_name: Janthinobacterium sp. CG_S6

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: University of Melbourne


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_country: Japan

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured cyanobacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W45757

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: JSS Academy of Higher Education & Research


ncbi_organism_name: Clostridium sulfidigenes


ncbi_country: USA: Licking County; Ohio

ncbi_isolation_source: groundwater well

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium Licking1014_17


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: University of Manitoba


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae


ncbi_assembly_name: IMG-taxon 2657245718 annotated assembly

ncbi_organism_name: Streptomyces sp. TverLS-915

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Prevotella melaninogenica


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA:Little Rock

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Thailand: Ubon; Pibul

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia sp. NRF60-BP8

ncbi_submitter: Northern Arizona University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Flavonifractor sp.


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Cyanobacteria bacterium REEB444

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium REEB444


ncbi_organism_name: Corynebacterium matruchotii


ncbi_isolation_source: fluid l knee

ncbi_organism_name: Staphylococcus sp. HMSC036D05

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas sp. FP1911

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5287

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5287


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Qinghai

ncbi_isolation_source: intestinal content of marmot

ncbi_organism_name: Arthrobacter sp. zg-Y1110

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_country: USA

ncbi_isolation_source: hyporheic zone of the Clark Fork River

ncbi_organism_name: Pseudomonas sp. CF161

ncbi_submitter: Boise State University


ncbi_assembly_name: Rumen uncultured genome RUG13967

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: gut

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Bacillus sp. FSL R5-0512

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R5-0512


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: USA: Oak Ridge; Field Research Center

ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: Australia: WA; Badgingarra

ncbi_organism_name: Mesorhizobium sp. B2-7-1

ncbi_submitter: Curtin University


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_strain_identifiers: HN 16

ncbi_submitter: Shihezi University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Eubacterium sp. AF18-3

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. AF18-3


ncbi_assembly_name: AM04528 assembly

ncbi_isolation_source: Human

ncbi_submitter: inrae nouzilly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Haloferula sp.

ncbi_submitter: EMG


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium CAG:215

ncbi_submitter: DTU


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Janibacter sp. UBA7490

ncbi_submitter: University of Queensland


ncbi_assembly_name: Kosakonia cowanii strain G119

ncbi_organism_name: Kosakonia cowanii

ncbi_strain_identifiers: UFU G119

ncbi_submitter: Federal University of Uberlandia


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_isolation_source: CSF or blood culture

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Anaplasma ovis

ncbi_strain_identifiers: Idaho

ncbi_submitter: IREC-SaBiO


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Caulobacteraceae bacterium


ncbi_country: USA: Anderson Lake; WA

ncbi_isolation_source: lake water

ncbi_organism_name: Aphanizomenon flos-aquae WA102

ncbi_submitter: Oregon State University


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Novosphingobium sp. BK267

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: Tanzania

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_submitter: National Veterinary Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Molade


ncbi_country: South Korea

ncbi_isolate: CNIPBac

ncbi_strain_identifiers: CNIPBac

ncbi_submitter: InfoBoss Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__ant endosymbionts;g__Candidatus Blochmanniella;x__unclassified Candidatus Blochmanniella;s__Blochmannia endosymbiont of Colobopsis nipponica


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0421R

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: USA: Georgia

ncbi_isolation_source: week R5 calf 124 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_isolation_source: GM-anode biofilm

ncbi_organism_name: Rhizobiales bacterium UBA697

ncbi_submitter: University of Queensland


ncbi_country: Russia: Borehole near Beyelii Yar in Tomsk

ncbi_isolation_source: groundwater filtered on 0.22 m filters

ncbi_organism_name: Thermodesulfovibrio sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: uncultured Propionibacterium sp.

ncbi_submitter: EMG


ncbi_assembly_name: Salmonella enterica CVM N30642-R v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: USA: California

ncbi_isolation_source: chicken

ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: USDA


ncbi_organism_name: uncultured Thiobacillus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Venezuela: Caracas

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: USA: International Space Station

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: feces

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Huzhou cdc


ncbi_country: India

ncbi_isolation_source: Chili Powder

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000230


ncbi_submitter: University of KwaZulu Natal


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Italy: PA Bolzano

ncbi_isolation_source: urine

ncbi_submitter: Azienda Sanitaria dell'Alto Adige


ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: University of Waterloo


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: seawater

ncbi_organism_name: Rhodobacterales bacterium HKCCA1059

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: France: Bordeaux

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Aurantimonadaceae;g__Aureimonas;s__Aureimonas ureilytica;x__Aureimonas ureilytica DSM 18598 = NBRC 106430


ncbi_organism_name: uncultured bacterium


ncbi_country: Sweden: Jonstorp

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium mellis

ncbi_submitter: Uppsala university


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR


ncbi_country: China: Beijing

ncbi_submitter: Peking University Third Hospital


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Australia: WA; Canna

ncbi_organism_name: Mesorhizobium sp. CA8

ncbi_submitter: Curtin University


ncbi_organism_name: Helicobacter felis ATCC 49179

ncbi_submitter: Wellcome Trust Sanger Institute


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Portugal: Amadora-Sintra

ncbi_isolation_source: Low Respiratory Tract Infection

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_country: South Africa

ncbi_isolation_source: North West province; South Africa

ncbi_organism_name: Escherichia coli O155:H21

ncbi_submitter: NORTH-WEST UNIVERSITY


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil: north of Parana s state

ncbi_isolation_source: Brazil: north of Parana s state; psciculture

ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: Londrina State University


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 153

ncbi_submitter: Oregon State University


ncbi_organism_name: Caulobacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R37(2017)

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangzhou

ncbi_isolation_source: Pus

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Guangzhou Medical University


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: University of Parma


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Burma

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Milk powder plant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University of Zurich


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Aromatoleum sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with retrograde maize

ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Singapore

ncbi_submitter: The University of Queensland


ncbi_organism_name: Paludibacterium sp. THUN1379

ncbi_submitter: Department of Clinical Laboratory Science Faculty of Health Care, Tenri University


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Ensifer sp. SL37

ncbi_submitter: Joint Microbiome Facility


ncbi_assembly_name: freshwater MAG --- MJ130617B_bin-026

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_country: Viet Nam: An Giang

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Micrococcales bacterium UBA3913

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: Germany

ncbi_submitter: FDA/CFSAN


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: School of Agricultural and Veterinary Sciences, Sao Paulo State University (Unesp)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Saint Louis; MO

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Corynebacterium pilosum

ncbi_submitter: Universidade Federal do Para


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Austria

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Microcoleus sp. S11D4

ncbi_submitter: Palacky University Olomouc


ncbi_country: France

ncbi_isolation_source: cheese (Tome de Savoie)

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: CIRM-BIA 639

ncbi_submitter: Brigham Young University


ncbi_organism_name: Lentilactobacillus raoultii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Staphylococcus aureus A6300

ncbi_submitter: Broad Institute


ncbi_country: Hong Kong

ncbi_isolation_source: Blood

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Citrobacter freundii


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Duganella zoogloeoides

ncbi_submitter: Cultivarium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: seawater

ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: Deep-Sea Bioresource Research Group , Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Denmark

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Canada: Ormstown; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas sp. B21-019

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_isolation_source: terrestrial

ncbi_organism_name: Massilia timonae

ncbi_submitter: University of Queensland


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Staphylococcus saprophyticus


ncbi_country: USA: TX

ncbi_isolation_source: feces parrot

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Zurich


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0883

ncbi_submitter: Broad Institute


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Salmonella sp. 21CR6302

ncbi_submitter: Children's Hospital Affiliated to Zhejiang University School of Medicine


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: First Affiliated Hospital of Guangzhou Medical University,Guangzhou Institute of Respiratory Health,


ncbi_organism_name: Segatella copri


ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Indian Institute of Science Education and Research Kolkata


ncbi_organism_name: Streptomyces sp. NPDC056399

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Rhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: Baise University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: CIRAD


ncbi_country: China: Quanzhou

ncbi_isolation_source: sediment around Spartina alterniflora

ncbi_organism_name: Proteobacteria bacterium DTSAM18

ncbi_submitter: Quanzhou Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium DTSAM18


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Firmicutes bacterium AM55-24TS

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AM55-24TS


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Streptomyces xiamenensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Aeromonas veronii bv. veronii

ncbi_strain_identifiers: CECT 4257

ncbi_submitter: UCONNMISEQ


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Cixi City; Zhejiang Province

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Russia: Kandalaksha Gulf; Zeleny Mys

ncbi_isolation_source: enrichment culture inoculated with microbial mat from coastal zone of meromictic lake

ncbi_organism_name: Chloroflexales bacterium ZM16-3

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany

ncbi_isolation_source: chick-box-paper

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Freie Universitaet Berlin


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Germany: Freising

ncbi_isolation_source: Lupin moromi fermentation

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Canada: Victoria

ncbi_isolation_source: Ixodes auritulus

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Ureibacillus yapensis

ncbi_submitter: Third Institute of Oceanography, State of Oceanic Administration


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: BGI


ncbi_isolation_source: TSA

ncbi_organism_name: Brachybacterium sp. Z12

ncbi_submitter: Kunsan National University


ncbi_organism_name: Schaalia hyovaginalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium GW2011_GWE1_47_12


ncbi_organism_name: Alistipes sp.


ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SRCAMB


ncbi_country: Switzerland

ncbi_isolation_source: Superficial wound

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pseudomonas sp. Teo4

ncbi_submitter: Georg-August-University Goettingen


ncbi_assembly_name: freshwater MAG --- Ki3-D2_bin-0050

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bavariicoccus seileri WCC 4188

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Italy

ncbi_isolation_source: Stool 4

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail fresh mint

ncbi_submitter: USDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Japan: Sapporo

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces cinnamoneus

ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA: Florida Keys; Sand Key

ncbi_isolation_source: marine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: India:Uttar Pradesh

ncbi_isolation_source: Mediastinal lymph node

ncbi_submitter: IVRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Gemella sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces roseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France: Bordeaux

ncbi_isolation_source: Stool

ncbi_organism_name: Escherichia coli O104:H4 str. Ec11-4988

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. Ec11-4988


ncbi_organism_name: Aquifex aeolicus VF5

ncbi_submitter: DIVERSA


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Malaysia: Perak

ncbi_isolation_source: Ulu Slim Hot Spring

ncbi_organism_name: Paenibacillus elgii

ncbi_submitter: University of Malaya


ncbi_organism_name: Methylocystis sp. LW5


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: fecal sample from healthy young woman

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Shanghai Yaodan Biotechnological Co., LTD


ncbi_country: Viet Nam

ncbi_isolation_source: Slaughterhouse

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antwerpen


ncbi_country: USA: FL

ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: China: Wuhan; Donghu Lake

ncbi_isolation_source: lake sediment

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Canada: Manitoba

ncbi_isolation_source: Leg wound

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Microbiology Laboratory


ncbi_country: China:Inner Mongolia

ncbi_isolate: pathogen isolation, culture and biochemical identification method

ncbi_isolation_source: synovial fluid

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: NM 2012;culture and biochemical identification method;pathogen isolation

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_submitter: University of Galway


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: Human (feces)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 69.H.06


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_strain_identifiers: FDC 828

ncbi_submitter: UNESP-FCAV

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Kandleria sp. UBA3741

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: the First Medicine Centre, Chinese PLA General Hospital


ncbi_organism_name: Pseudarthrobacter oxydans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_isolation_source: terrestrial

ncbi_organism_name: Brevundimonas sp.


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: Catheter

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_isolation_source: lake water

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Russia: Republic of Tatarstan

ncbi_isolation_source: potato rhizosphere

ncbi_organism_name: Pseudomonas sp. MG-9

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Acinetobacter baumannii AB_1583-8

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon mucosa

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Yantai University


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_isolation_source: Corneal Scaping

ncbi_organism_name: Pseudomonas aeruginosa BL03

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SurvCARE


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: China

ncbi_isolation_source: chicken carcass

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolate: metabat2_pooled_metaflye.1341 MAG

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_strain_identifiers: metabat2_pooled_metaflye.1341 MAG

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_country: China: Shanghai

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai CDC


ncbi_country: Japan

ncbi_isolation_source: deep-sea hydrothermal vent flange structure

ncbi_organism_name: Nitrosophilus labii

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Science, Hokkaido University


ncbi_country: USA: Utah; Castle Valley

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Utah


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Texas Tech University


ncbi_organism_name: Streptomyces chartreusis NRRL 12338

ncbi_submitter: US Dept of Agriculture, NCAUR-USDA


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: Norway

ncbi_isolation_source: Blood culture

ncbi_submitter: St. Olav University Hospital


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3036

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Argentina

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Xanthomonas sp. LMC-A-07

ncbi_submitter: University of Chicago


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site C

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_assembly_name: Rumen uncultured genome RUG12823

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Candidatus Sumerlaeia bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;c__Candidatus Sumerlaeia;x__unclassified Candidatus Sumerlaeia;s__Candidatus Sumerlaeia bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: Canada: High River

ncbi_isolation_source: Cattle feces

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_submitter: US EPA


ncbi_isolation_source: intestine

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Cytobacillus purgationiresistens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0138

ncbi_submitter: Broad Institute


ncbi_country: USA: IN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: Russia: Moskwa river

ncbi_organism_name: Zavarzinia compransoris


ncbi_country: Ireland: Dublin

ncbi_isolation_source: periorbital

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Trinity College Dublin


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Weihai

ncbi_isolation_source: sediment permeated by saline water

ncbi_organism_name: Lujinxingia vulgaris

ncbi_submitter: Shandong University at Weihai


ncbi_country: Italy

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Ghana: Accra

ncbi_isolation_source: Livestock farm

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Mycoplasmopsis agalactiae

ncbi_submitter: Genoscope


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter gerneri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: EC-Ik-M

ncbi_submitter: QUAID-I-AZAM UNIVERSITY ISLAMABAD


ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_isolation_source: Bovine Faeces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: Ghana

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_country: United Kingdom

ncbi_isolation_source: Duck

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Germany

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: IMG-taxon 2585428090 annotated assembly

ncbi_organism_name: Peptoclostridium litorale DSM 5388

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia: Newcastle

ncbi_organism_name: Collinsella stercoris

ncbi_submitter: University of Queensland


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Chile

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_assembly_name: CITSP

ncbi_organism_name: Citrobacter sp. T1.2D-1

ncbi_submitter: GENGS-CBMSO


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bombiscardovia nodaiensis

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Bacillus cereus group sp. BceL193

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL193


ncbi_organism_name: Klebsiella sp. PB10

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bern


ncbi_isolate: AOP8_A1_surf _bin _7

ncbi_organism_name: Paucilactobacillus nenjiangensis

ncbi_strain_identifiers: AOP8_A1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Candidatus Levibacter sp. Uisw_134_01

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Levibacteraceae;g__Candidatus Levibacter;x__unclassified Candidatus Levibacter;s__Candidatus Levibacter sp. Uisw_134_01


ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Brevibacillus formosus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Parvimonas sp. G1425

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: cold seep

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Thermoleophilaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: uncultured Candidatus Jidaibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Jidaibacter;x__environmental samples;s__uncultured Candidatus Jidaibacter sp.


ncbi_organism_name: Agrobacterium rosae

ncbi_submitter: University of British Columbia


ncbi_submitter: Colorado State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Laboratory of Veterinary Bacteriology UFRGS


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: Megasphaera hexanoica

ncbi_strain_identifiers: MH

ncbi_submitter: Hanyang University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Oswaldo Cruz Institute - Fiocruz


ncbi_organism_name: Lachnospiraceae bacterium HCP1S3_C11

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_submitter: National Institute of Health


ncbi_isolate: AOP1_E1_surf _bin _42

ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_strain_identifiers: AOP1_E1_surf _bin _42

ncbi_submitter: Genoscope

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_submitter: South China Agricultural University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Liard River

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: Lithuanian Research Centre for Agriculture and Forestry


ncbi_organism_name: Klebsiella sp. R55

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Escherichia coli

ncbi_submitter: Quanzhou Women's and Children's Hospital


ncbi_organism_name: Shewanella chilikensis

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Candidatus Ozemobacteraceae bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;c__Candidatus Ozemobacteria;x__Candidatus Ozemobacterales;f__Candidatus Ozemobacteraceae;x__unclassified Candidatus Ozemobacteraceae;s__Candidatus Ozemobacteraceae bacterium


ncbi_country: USA: New York; NY

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Candidatus Planktophila sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__environmental samples;s__uncultured Candidatus Planktophila sp.


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Portland State University


ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Stockholm University


ncbi_assembly_name: Rumen uncultured genome RUG12785

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Undibacterium sp. CCC1.1

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: Russia: St-Petersburg

ncbi_isolation_source: vagina

ncbi_organism_name: Gardnerella swidsinskii

ncbi_submitter: Ghent University