ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_level: Contig

ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_assembly_name: freshwater MAG --- Umea1_bin-0672

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


gtdb_representative: t

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Spain: Andratx

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_00264

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rennes Hospital


ncbi_organism_name: Ruminococcus bovis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Spain: Ribadeo; Galicia

ncbi_isolation_source: larvae in seawater tank

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MS

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR3781

ncbi_submitter: Broad Institute


ncbi_isolation_source: human skin

ncbi_organism_name: Gordonia bronchialis

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Lindowiibacteriota;x__unclassified Candidatus Lindowiibacteriota;s__Candidatus Lindowbacteria bacterium RIFCSPLOWO2_02_FULL_62_12


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_country: Canada: Nunavut; Northern Canada; Alexandra Fiord

ncbi_isolate: AFD bin46

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: AFD bin46

ncbi_submitter: Monash University


ncbi_country: USA: California

ncbi_isolation_source: bulk soil

ncbi_organism_name: Bradyrhizobium sp. CW12

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptomyces sp. NBC_01455


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_strain_identifiers: acrnj

ncbi_submitter: NHGRI/NIH


ncbi_country: Canada: Quebec; Quebec

ncbi_isolation_source: Root nodule from soybean plant inoculated with root zone soil from Amphicarpaea bracteata

ncbi_organism_name: Bradyrhizobium barranii subsp. barranii

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_country: China: Shatin

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: blood

ncbi_submitter: The Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 2010K-0271


ncbi_country: China: Hangzhou; Zhejiang

ncbi_isolation_source: Intracranial infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Serratia nevei

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Faecalicoccus pleomorphus

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Ant nest

ncbi_organism_name: Streptomyces antnestii

ncbi_refseq_category: reference genome

ncbi_submitter: University of New Hampshire


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Ectothiorhodospiraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Salad

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum;x__Mycobacterium tuberculosis variant africanum MAL010129


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: human gut

ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0378

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_country: Nigeria

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AF32-2AC

ncbi_submitter: BGI


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Candidatus Fervidibacter sp.

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;x__unclassified Candidatus Fervidibacter;s__Candidatus Fervidibacter sp.


ncbi_organism_name: Anaerorhabdus sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Longicatena sp. 210702-DFI.1.255

ncbi_submitter: University of Chicago


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Persephonella sp.

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_organism_name: Haemophilus influenzae


ncbi_country: South Korea: Buyeo

ncbi_isolation_source: rhizosphere of tomato

ncbi_organism_name: Brucella anthropi

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Colombia: Cali

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_country: USA

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus H43700

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus sp. FSL R7-0166

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R7-0166


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: China: Wenzhou

ncbi_isolation_source: sputum

ncbi_submitter: School of Laboratory Medicine and Life Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: New York

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Denmark

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum


ncbi_country: China

ncbi_isolation_source: seed

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Chinese Academy of Agricultural Sciences (CAAS)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Tanzania: DAR ES SALAAM

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_submitter: Swansea University


ncbi_assembly_name: Rhodobacteraceae bacterium Alg231_04

ncbi_isolate: Rhodobacteraceae bacterium Alg231_04

ncbi_isolation_source: sea water

ncbi_organism_name: Rhodobacteraceae bacterium Alg231-04

ncbi_strain_identifiers: Rhodobacteraceae bacterium Alg231_04

ncbi_submitter: Elham Karimi


ncbi_country: Lebanon: Tripoli

ncbi_isolation_source: newborn stool

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: CMUL 139

ncbi_submitter: Aix Marseille University / Lebanese University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Faecalimonas sp.


ncbi_organism_name: Odoribacter laneus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella sp. K128

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Escherichia marmotae

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinshan District Center for Disease Control and Prevention


ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Anaeromicropila sp.


ncbi_organism_name: Candidatus Flemingiibacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Flemingiibacterium;x__unclassified Candidatus Flemingiibacterium;s__Candidatus Flemingiibacterium sp.


ncbi_organism_name: Mediterraneibacter faecis


ncbi_submitter: Yangzhou University


ncbi_organism_name: Ornithinimicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacillus sp. AF62

ncbi_submitter: Unversidad Michoacana de San Nicolas de Hidalgo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AF62


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Uruguay

ncbi_isolation_source: activated sludge reactor flocs

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Biological Research Institute "Clemente Estable"


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Firmicutes bacterium CAG:103

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:103


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Streptomyces sp. NPDC102279

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Toho university


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- AlinenSediments_bin-3940

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: BILS


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus aureus A5937

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Tetragenococcus halophilus subsp. flandriensis

ncbi_submitter: Genome Research Center, NODAI Research Institute, Tokyo University of Agriculture


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Fervidobacterium sp.


ncbi_country: Spain: Madrid

ncbi_isolation_source: blood culture from a patient in a burn unit

ncbi_submitter: Oh no sequences! Era7 Bioinformatics R&D group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae KpQ24


ncbi_assembly_level: Chromosome

ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Germany

ncbi_isolation_source: surface water

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Masaryk University


ncbi_organism_name: Listeria swaminathanii

ncbi_submitter: University of Tennessee


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Litorilinea sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Huashan Hospital


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudomonadaceae bacterium UBA6949

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Novosphingobium sp. 1748

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bacillus infantis

ncbi_submitter: University of Alaska Anchorage


ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain

ncbi_isolation_source: Mastitic milk

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_country: New Zealand

ncbi_isolation_source: blood

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Bacillus safensis

ncbi_submitter: University of Malaya


ncbi_organism_name: Streptomyces roseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: California

ncbi_organism_name: Bacillus sp. TBS-096

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. TBS-096


ncbi_organism_name: Klebsiella sp. 128897

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: USA: SD

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Proteus sp. G2664

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2664


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail chicken skin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United States Department of Agriculture


ncbi_country: Pakistan: Bahwalpur; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. B_2

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Helicobacter typhlonius


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_50_17


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 35

ncbi_submitter: Lebanese American University


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Federal University of Minas Gerais

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Salmonella sp. KL14053

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: Cambodia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Paenibacillus azoreducens

ncbi_submitter: Obihiro University of Agriculture and Veterinary Medicine


gtdb_type_species_of_genus: t

ncbi_country: China:Yunnan; Xishuangbanna

ncbi_isolation_source: Surface-sterilized roots

ncbi_organism_name: Plantactinospora mayteni

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: USA: Lake Erie

ncbi_isolation_source: Lake Erie

ncbi_organism_name: Deinococcus sp. JMULE3

ncbi_submitter: James Madison University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_country: Israel: Negev desert

ncbi_isolation_source: desert sand [ENVO_00005800]

ncbi_organism_name: Bartonella krasnovii

ncbi_submitter: Hebrew university


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: PARUL UNIVERSITY


ncbi_isolate: metabat2_XCR1_HOM_6759_bwa.61 MAG

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_strain_identifiers: metabat2_XCR1_HOM_6759_bwa.61 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA2413


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Halieaceae bacterium UBA3099


ncbi_country: China: Beijing

ncbi_isolation_source: Vallisneria natans rhizosphere

ncbi_organism_name: Devosia sp. FKR38

ncbi_submitter: Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- AM-2014-D8_bin-0653

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EBI


ncbi_country: India: Kerala; Western Ghats; Neyyar Wild Life Sanctuary; Agasthyamala

ncbi_isolation_source: forest soil

ncbi_organism_name: Streptosporangium nondiastaticum

ncbi_submitter: Jawaharlal Nehru Tropical Botanic Garden & Research Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia: Segamat

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Monash University Malaysia


ncbi_country: Hong Kong

ncbi_isolation_source: Blood

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China:Hunan Province

ncbi_isolate: Tobacco rhizosphere soil

ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter ludwigii

ncbi_strain_identifiers: JP9;Tobacco rhizosphere soil

ncbi_submitter: Shandong Agricultural University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: EMG


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: USA

ncbi_organism_name: Leptospira noguchii str. 2006001870

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Vibrio cholerae HC-48A1

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Ethiopia

ncbi_isolation_source: injera fermented dough

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Brigham Young University


ncbi_organism_name: Chitinophaga pinensis DSM 2588

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;f__Chitinophagaceae;g__Chitinophaga;s__Chitinophaga pinensis;x__Chitinophaga pinensis DSM 2588


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_assembly_name: Peptoclostridium difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: vagina

ncbi_organism_name: Peptostreptococcus sp. MV1

ncbi_submitter: JCVI


ncbi_submitter: Norwegian Veterinary Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Argentina: Tandil

ncbi_submitter: Universidad de Chile


ncbi_country: India

ncbi_organism_name: Xanthomonas axonopodis pv. martyniicola

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_submitter: Institute of Marine Research


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pullichristensenella;s__Candidatus Pullichristensenella stercoripullorum


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: Rickettsia rickettsii str. Iowa

ncbi_strain_identifiers: Iowa

ncbi_submitter: Rocky Mountain Laboratories

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia rickettsii;x__Rickettsia rickettsii str. Iowa


ncbi_isolation_source: Caecum

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Xenobia bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Candidatus Xenobia;x__unclassified Candidatus Xenobia;s__Candidatus Xenobia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolate: SPRUCE 311

ncbi_organism_name: Terriglobia bacterium

ncbi_strain_identifiers: SPRUCE 311

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: Tracheal lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Canada: Rouyn-Noranda

ncbi_isolation_source: throat

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Laval


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Kitasatospora sp. NPDC093102

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: bioreactor treating saline wastewater (1% salinity) containing high content of P

ncbi_organism_name: Candidatus Accumulibacter adiacens

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter adiacens


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-322

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-322


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bythopirellula sp.

ncbi_submitter: University of California Davis


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: child feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: India: Pune; Maharashtra

ncbi_organism_name: Shouchella clausii

ncbi_submitter: MACS Agharkar Research Institute, Pune (MS) India


ncbi_organism_name: Anaerococcus sp.

ncbi_submitter: University of Minnesota


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Micromonospora chersina

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Mesorhizobium sp. M0514

ncbi_submitter: Washington State University


ncbi_organism_name: Aequorivita sp. Q41

ncbi_submitter: Cong Sun Research Group


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Brazil: Amazon

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: China Agricultural University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Okayama University


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Streptomycetaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Glaciecola sp. 2405UD65-10

ncbi_submitter: Hannam University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Morganella morganii

ncbi_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion


ncbi_organism_name: uncultured Rhodovarius sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Streptomyces sp. ARC14

ncbi_submitter: University of California, San Diego


ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_organism_name: Marinifilum sp. RC60d5

ncbi_submitter: Shandong University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Streptomyces sp. NPDC085614

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. C3340

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Pelovirga sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Terracidiphilus sp.


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Microbacterium sp. PA5

ncbi_submitter: Zhejiang University


ncbi_organism_name: Priestia sp. YIM B13546

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;x__unclassified Priestia;s__Priestia sp. YIM B13546


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Candidatus Limiplasma merdipullorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma merdipullorum


ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_organism_name: Pirellula sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Thauera sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: Connecticut; Southington

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Michigan State University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: (DCM) deep chlorophyll maximum layer

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3221-1

ncbi_submitter: Broad Institute


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Fisheries Research Institute of Jiangxi Province


ncbi_organism_name: Streptomyces avermitilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA3168

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Veillonella sp.


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: INRA-MIG


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_organism_name: Streptomyces violaceochromogenes

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: France: Rocamadour PDO area

ncbi_isolation_source: raw milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Toulouse Biotechnology Institute


ncbi_organism_name: uncultured Allisonella sp.

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: Morganella morganii

ncbi_submitter: National Chung Cheng University


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: South Africa: Finsch mine in Finsch district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Desulfosudis oleivorans

ncbi_submitter: University Duisburg-Essen


ncbi_country: China: Qinghai-Tibet Plateau

ncbi_isolation_source: lake water

ncbi_organism_name: Halomonas sp. QHL1

ncbi_submitter: Qinghai University Medical College


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Cronobacter dublinensis subsp. dublinensis

ncbi_submitter: University of Wyoming


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin9

ncbi_isolation_source: soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_strain_identifiers: LAG bin9

ncbi_submitter: Monash University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: chicken litter

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Myxococcus fulvus

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Nonlabens ulvanivorans


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Campylobacter fetus subsp. fetus

ncbi_submitter: Munster Technological University


ncbi_country: France: Nantes

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile P1

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: USA: New York State

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Cornell University


ncbi_assembly_name: Rumen uncultured genome RUG12529

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Africa: Capetown

ncbi_isolation_source: flocculating fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Tajikistan: Tursunzoda

ncbi_isolation_source: tumor

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University of Bergen


ncbi_country: France: Chambery

ncbi_isolation_source: Parenteral nutrition bags for newborns

ncbi_organism_name: Rouxiella chamberiensis

ncbi_submitter: Charles Sturt University


ncbi_country: China

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S077

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S077


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium UBA919


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_strain_identifiers: Schu S4

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. tularensis;x__Francisella tularensis subsp. tularensis SCHU S4;x__Francisella tularensis subsp. tularensis str. SCHU S4 substr. SL


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Trebonia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV2756C6

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2756C6


ncbi_country: China: Dalian

ncbi_isolation_source: Phenol treatment bioreactors

ncbi_organism_name: Pseudomonas sp. PI1

ncbi_submitter: Dalian University of Technology


ncbi_isolation_source: Urology Surgery

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Guangzhou Medical University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Minnesota

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus sp. UMNPBX1

ncbi_submitter: University of Minnesota


ncbi_country: Sweden

ncbi_isolation_source: groin

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: EA2656 GRAM


ncbi_country: China: Anhui

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: Germany: Landstuhl

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China: Ningxia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Aestuariivirga sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division CSSED10-310;s__candidate division CSSED10-310 bacterium


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_submitter: China-Japan Friendship Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_country: Spain

ncbi_isolation_source: Oysters; cultured off the Spanish Mediterranean coast

ncbi_organism_name: Vibrio lentus

ncbi_strain_identifiers: CECT 5110

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Planctomycetia bacterium


ncbi_isolation_source: vaginal metagenome


ncbi_country: France

ncbi_isolation_source: liver abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Absicoccus intestinalis

ncbi_submitter: RWTH


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Paenalcaligenes sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: College of Animal Science and Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rickettsia typhi

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_isolation_source: throat of asymptomatic infant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcales cyanobacterium


ncbi_country: Belgium

ncbi_isolation_source: Zoo Antwerpen

ncbi_submitter: Faculty of Veterinary Medicine, Ghent University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Loclat_bin-08023

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Bifidobacterium mongoliense

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pseudonocardia alni

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter pittii


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: NY

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus aureus DAR1874

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_country: China

ncbi_isolation_source: pickle

ncbi_organism_name: Levilactobacillus mulengensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 1

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Hungatella sp.


ncbi_assembly_name: Rumen uncultured genome RUG14162

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Italy: Florence

ncbi_isolation_source: nose lavage

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Intrasporangium sp.

ncbi_submitter: University of Sao Paulo


ncbi_country: USA

ncbi_organism_name: Mycobacterium tuberculosis H37Rv

ncbi_submitter: University of British Columbia


ncbi_organism_name: Rhodococcus rhodochrous J38

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Brucella pituitosa

ncbi_submitter: Max-Planck-Institute for Evolutionary Biology


ncbi_country: Japan

ncbi_isolation_source: patient suffering from lung nocardiosis

ncbi_organism_name: Nocardia terpenica

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Paracoccus yeei

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EMG


ncbi_isolation_source: Fluid

ncbi_organism_name: Staphylococcus aureus DAR966


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus pumilus


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Neorhizobium galegae


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA3325

ncbi_submitter: University of Queensland


ncbi_country: Netherlands

ncbi_isolation_source: Systemic

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: Pre-slaughter chicken

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: USA: Texas

ncbi_isolation_source: urine

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22528;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Leptospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Ferruginibacter sp.


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AM93-12TA

ncbi_submitter: BGI-Shenzhen


ncbi_country: Iceland:US Naval Hospital

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M12717

ncbi_submitter: Broad Institute


ncbi_country: South Korea: Changnyeong

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Hanyang University


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Staphylococcus aureus T45974


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: UIUC


ncbi_assembly_name: freshwater MAG --- AM-2014-D2_bin-780

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: BILS


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: ground chicken meat

ncbi_submitter: USDA


ncbi_country: Turkmenistan: Balkany

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague institute "Microbe"


ncbi_country: Mexico

ncbi_strain_identifiers: BGSC 4AC1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar mexicanensis


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Pyrogenes;x__Leptospira interrogans serovar Pyrogenes str. SriLanka2


ncbi_isolation_source: goose egg

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Potsdam


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jena University Hospital


ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa

ncbi_organism_name: Pantoea sp. MHSD4

ncbi_submitter: University of Johannesburg


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_country: China: Beijing

ncbi_isolation_source: throat swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Lethbridge


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: Brazil: Minas Gerais; Iron Quadrangle

ncbi_isolation_source: cave soil

ncbi_organism_name: Enterobacteriaceae bacterium 89

ncbi_submitter: BIGA


ncbi_submitter: National Institute of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hormaechei


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_assembly_name: Rumen uncultured genome RUG575

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Brisbane

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: The University of Queensland


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Syntrophaceae bacterium


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC127079

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Institut Pasteur


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Catenibacterium faecis

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Nanjing University


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Finnish Food Authority


ncbi_submitter: University of Calgary


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus sp. AZ192

ncbi_submitter: Broad Institute


ncbi_organism_name: Brachybacterium sp. AOP3-A1-3

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Candidatus Cryosericum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;x__unclassified Candidatus Cryosericum;s__Candidatus Cryosericum sp.


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: India: Veraval; Gujarat

ncbi_isolation_source: fish drying yard

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Bioinnovations, Mumbai, India


ncbi_country: France

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: INSERM U1047


ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Peking University


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lacticaseibacillus paracasei


ncbi_country: United Kingdom

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_assembly_name: IMG-taxon 2693429897 annotated assembly

ncbi_organism_name: Allgaiera indica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: OH

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Sweden

ncbi_isolation_source: industry

ncbi_organism_name: Pseudomonas sivasensis

ncbi_submitter: University of Balearic Islands


ncbi_country: Antarctica: McMurdo Sound

ncbi_isolation_source: pond sediment

ncbi_organism_name: Psychromonas antarctica

ncbi_submitter: Nottingham Trent University


ncbi_country: USA: California

ncbi_organism_name: Streptomyces sp. st140


ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Jena; garden Neugasse

ncbi_isolation_source: leaf [PO:0025034 leaf]

ncbi_organism_name: Pseudomonas siliginis

ncbi_submitter: Friedrich-Schiller-Universitaet


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: India

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Translational Health Science and Technology Institute (THSTI)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Zhejiang University


ncbi_country: USA:Wyoming; Yellowstone National Park; Smoking Gun OF hot spring

ncbi_isolation_source: alkaline hot spring microbial mat

ncbi_organism_name: Roseiflexus sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_assembly_name: Isolate 8

ncbi_submitter: Kalmar county hospital


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Iowa


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium breve


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: IA

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Oceanobacillus profundus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_assembly_name: Kosakonia cowanii strain D1

ncbi_organism_name: Kosakonia cowanii

ncbi_strain_identifiers: UFU D1

ncbi_submitter: Federal University of Uberlandia


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Alistipes inops


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: Malaysia: Universiti Teknologi Malaysia; Greenhouse

ncbi_isolation_source: soil cooling of temperate crop in the tropical climate

ncbi_organism_name: Agromyces sp. C10

ncbi_submitter: Fundamental Research Grant Scheme (FRGS)


ncbi_country: Japan

ncbi_isolation_source: fecal material [ENVO:00002013]

ncbi_organism_name: Bifidobacterium catenulatum subsp. catenulatum

ncbi_submitter: Yakult Central Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Polaromonas sp. 16-63-31


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Brazil: Campinas

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Clone isolated from the evolution experiment described in Ketola et al. 2013 (doi: 10.1111/evo.12148)

ncbi_submitter: UNIVERSITY OF JYVASKYLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens ATCC 13880


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 66

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: South Korea: Chungnam

ncbi_isolation_source: center of the feces

ncbi_organism_name: Kribbibacterium absianum

ncbi_submitter: ABS Research Support Center


ncbi_isolation_source: chicken

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SE8a


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.595 MAG

ncbi_isolate: bin.595 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Formosa sp. Hel3_A1_48

ncbi_strain_identifiers: bin.595 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Veterinary College


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Flavobacterium sp. LB2P53

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter sp. CA2-7

ncbi_submitter: Seoul Women's university


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Moscow


ncbi_country: Colombia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Escherichia coli 99.0713

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Spain: Lugo

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: Comoros

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: Argentina

ncbi_organism_name: Streptomyces sp. M7

ncbi_submitter: PROIMI


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: Environment

ncbi_submitter: US Food and Drug Administration


ncbi_assembly_name: freshwater MAG --- Umea1_bin-3045

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14735

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Yunnan

ncbi_isolation_source: geothermally heated soil sample

ncbi_organism_name: Thermus tengchongensis

ncbi_submitter: School of Life Science


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: water from hydrothermal vent

ncbi_organism_name: Thermosipho melanesiensis

ncbi_submitter: University of Oslo


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Human feces

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Corynebacterium auriscanis

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AGROSAVIA


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: people's hospital of xiushan county


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: rat gut

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Hubei Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_isolate: Rhizobiales sp. RBC019

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_strain_identifiers: Rhizobiales sp. RBC019

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Parabacteroides gordonii

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: Phayao; Thailand

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_submitter: University of Toronto


ncbi_isolation_source: bile

ncbi_organism_name: Vibrio fluvialis


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Turkey: Golcuk

ncbi_isolation_source: lake sediment

ncbi_organism_name: Actinomadura sp. GC306

ncbi_submitter: Ondokuz Mayis University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_assembly_name: Rumen uncultured genome RUG12772

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: USA: Lincoln; NE

ncbi_organism_name: Rouxiella chamberiensis

ncbi_submitter: University of Coimbra


ncbi_country: Germany

ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Legionella pneumophila subsp. raphaeli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: OR

ncbi_organism_name: Bordetella pertussis


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago