ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Streptococcus intermedius B196

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus intermedius;x__Streptococcus intermedius B196


ncbi_assembly_level: Scaffold

ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus TCH70


ncbi_country: Mozambique

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Betaproteobacteria bacterium PRO3

ncbi_submitter: Peking University


ncbi_organism_name: Prevotella sp.


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 315

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 940

ncbi_submitter: University of Calgary


ncbi_organism_name: Pedobacter sp. ASV2

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pediococcus inopinatus

ncbi_submitter: Shanghai Majorbio

ncbi_type_material_designation: assembly from type material


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


gtdb_representative: t

ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Cleveland Clinic


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2585428076 annotated assembly

ncbi_organism_name: Butyricicoccus pullicaecorum DSM 23266

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_country: Switzerland

ncbi_isolation_source: beef

ncbi_organism_name: Clostridium tagluense

ncbi_submitter: University of Zurich


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: SOX R

ncbi_isolation_source: thiotroph symbiont from mussel gill epithellium

ncbi_strain_identifiers: SOX R

ncbi_submitter: CRC 1182 Origin and Function of Metaorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Bathymodiolus brooksi thiotrophic gill symbiont


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Saprospiraceae bacterium UBA2329

ncbi_submitter: University of Queensland


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_isolate: Brevundimonas sp. G8

ncbi_organism_name: Brevundimonas sp. G8

ncbi_strain_identifiers: Brevundimonas sp. G8

ncbi_submitter: Elham Karimi


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: USA: OK

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Mizoram

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Nocardiopsis sp. Huas11

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Queensland dairy property

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: University of Calgary


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Ketobacter sp.


ncbi_country: South Africa

ncbi_isolation_source: Fresh Produce

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: UPMP 1164

ncbi_submitter: University of Pretoria


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus rhamnosus;x__Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: ABFRH

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Asaia bogorensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Boston

ncbi_isolation_source: URINE

ncbi_organism_name: Klebsiella variicola

ncbi_strain_identifiers: BIDMC 61

ncbi_submitter: Broad Institute


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: United Kingdom

ncbi_isolation_source: symptomatic inner bark

ncbi_organism_name: Brenneria goodwinii

ncbi_submitter: University of the West of England


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_isolation_source: xylene contaminated groundwater

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Duisburg-Essen University


ncbi_isolation_source: pig gut metagenome


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: Texas

ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_organism_name: Streptomyces erythrochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Beijing

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bifidobacterium dentium ATCC 27678

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_organism_name: Porticoccus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Sphingosinicella sp.

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: NNSe 2554

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Denmark

ncbi_isolation_source: gut

ncbi_submitter: University of Southampton


ncbi_organism_name: Paraburkholderia sp. MM5496-R1

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Bioreactor performing anaerobic oxidation of methane coupled to iron reduction

ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Colombia

ncbi_isolation_source: drag swab from a swine farm

ncbi_submitter: Universidad Nacional de Colombia


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: patient with hemolytic uremic syndrome (HUS)

ncbi_organism_name: Escherichia coli O145:H28 str. 4865/96

ncbi_submitter: US FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O145:H28;x__Escherichia coli O145:H28 str. 4865/96


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Pontimonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: South Carolina

ncbi_isolation_source: estuary

ncbi_organism_name: Vibrio sp. JPW-9-11-11

ncbi_submitter: Active Teaching NextGenSequencing Group (GCAT-SEEK)


ncbi_isolation_source: Oceanic sample

ncbi_organism_name: Sulfitobacter sp. M22

ncbi_submitter: University of Oldenburg


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Chapel Hill; North Carolina

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Comamonadaceae bacterium UBA2543

ncbi_submitter: University of Queensland


ncbi_organism_name: Brucella abortus NI645

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Guangzhou

ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: The Second Clinical College, Guangzhou University of Chinese Medicine


ncbi_country: USA

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Coleofasciculaceae cyanobacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Tokyo Medical and Dental University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia wexlerae


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: United Kingdom: Leicester

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Leicester


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiia bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas granadensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_isolation_source: Blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: United Kingdom: Wrexham

ncbi_isolation_source: leachate from landfill lab-scale methanogenic bioreactors

ncbi_organism_name: Anaerorudis cellulosivorans

ncbi_refseq_category: reference genome

ncbi_submitter: SYNBIOGAS Project


ncbi_assembly_name: freshwater MAG --- UppL4_bin-492

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Yunnan

ncbi_isolation_source: tobacco leaves

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Yunnan Academy of Tobacco Agriculture Science


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: Portugal: Leiria

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Universidade de Aveiro


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: USA: Memphis; Nebraska

ncbi_organism_name: Pseudomonas parafulva

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Democratic Republic of the Congo: Kinshasa

ncbi_isolation_source: fecal samples

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Oceanihabitans sp. IOP_32

ncbi_submitter: Third Institute of Oceanography,National Oceanic Adminisstration


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Astrakhan

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Russian Research Anti-Plague Institute Microbe


ncbi_country: Mexico: Mexico city

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNIVERSIDAD NACIONAL AUTONOMA DE MEXICO


ncbi_assembly_name: Rumen uncultured genome RUG13581

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Micromonospora sp. M42

ncbi_submitter: Broad Institute


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Melbourne


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Lebanon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: lebanese american university


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_country: USA: Connecticut; New Haven

ncbi_organism_name: Candidatus Pseudomonas adelgestsugas

ncbi_submitter: Utah State University


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stenotrophomonas sp. UBA5023

ncbi_submitter: University of Queensland


ncbi_country: Switzerland:Lake Cadagno

ncbi_isolation_source: Lake Cadagno chemocline

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillibacter sp. KLE 1728

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Bacillus safensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_isolate: SPRUCE 15

ncbi_organism_name: Geobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 15

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Liu et al. 2021)


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Agricultural University of Athens


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces sp. NPDC056749


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Morganella morganii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Children's Hospital Affiliated to Zhengzhou University


ncbi_assembly_level: Chromosome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sorangium sp. So ce1667

ncbi_strain_identifiers: So ce1667

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce1667


ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Phycisphaeraceae bacterium


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: uncultured Fibrobacteraceae bacterium


ncbi_organism_name: Streptococcus oralis subsp. tigurinus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Blautia faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Institute of Biology, Vietnam Academy of Science and Technology


ncbi_organism_name: Brevibacterium sp. NPDC056726

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Washington University School of Medicine


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Michigan

ncbi_organism_name: Haematobacter missouriensis

ncbi_submitter: CDC


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: USA: California; Modesto

ncbi_organism_name: Armatimonadota bacterium


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: China: Xining

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium sp. WYCCWR 11146

ncbi_strain_identifiers: WYCCWR 11146

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_assembly_name: IMG-taxon 2521172641 annotated assembly

ncbi_organism_name: Pseudomonas sp. LAMO17WK12:I11

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: India: Kolkata

ncbi_isolation_source: fecal sample

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pararhodobacter marinus

ncbi_submitter: Xiamen University


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Taiwan

ncbi_isolation_source: Taichung Veterans General Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Beach Ranger

ncbi_submitter: National Chung Cheng University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA7802

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R783;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: lake water

ncbi_organism_name: Oxalobacteraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_submitter: Soochow University


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Tunku Abdul Rahman


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: microbial mat

ncbi_organism_name: Oscillatoriales cyanobacterium PMM_0008

ncbi_submitter: University of Liege


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Russia: Sverdlovsk Region

ncbi_isolation_source: Ready-to-cook meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Kitasatospora sp. NPDC057692

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EBI


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Maribacter sp. UBA6511

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: unknown


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Hungary

ncbi_submitter: Yale School of Public Health


ncbi_assembly_name: freshwater MAG --- Ja2-D2_bin-0179

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Spain: Seville

ncbi_isolation_source: marsh soil; rhizosphere of the halophyte Arthrocnemum macrostachyum

ncbi_organism_name: Roseibium salinum

ncbi_strain_identifiers: CECT 8816

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: China: Xi an

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College London (UCL)


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: NY; New York City

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Erythrobacter sp. NAP1

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus pneumoniae PNI0076

ncbi_submitter: Washington University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Virginia

ncbi_isolation_source: soil

ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: Wuhan Institute of Virology, Chinese Academy of Sciences


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCLR17_058

ncbi_submitter: University of California, Irvine


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Dickeya zeae

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environmental surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1176

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_country: South Korea: Cheongju-si

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Korea Disease Control and Prevention Agency


ncbi_isolation_source: gut

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Hospital Ramon y Cajal


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Paenibacillus taichungensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Acinetobacter baumannii 573719

ncbi_submitter: Institute for Genome Sciences


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: environmental

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_country: Brazil

ncbi_isolation_source: chicken carcass (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum

ncbi_organism_name: Hoylesella nanceiensis

ncbi_submitter: University of the Sunshine Coast


ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-120

ncbi_submitter: JCVI


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Jet Propulsion Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known


ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: digestive tract (UBERON:0001555); intestine (UBERON:0000160)

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: FL

ncbi_isolation_source: fecal calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Enterococcus faecalis EnGen0330

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Netherlands

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_country: China: Jiangsu

ncbi_isolation_source: gallbladder

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Cupriavidus sp. NPDC089707

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Paenibacillus alvei

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Nostocoides sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_country: Greece

ncbi_isolation_source: rectal

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: bioMerieux


ncbi_country: India: Uttar Pradesh; Ghaziabad; Modinagar

ncbi_isolation_source: Nasal Swab from a Mare

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: ICAR-National Research Centre on Equines


ncbi_country: Colombia

ncbi_isolation_source: Excreted bodily substance

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Enterobacter sp. BWH63

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. BWH63


ncbi_country: USA: Lake Superior

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Chicago


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Mizoram

ncbi_isolation_source: fermented soybean food: Bekang

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Sri Ramachandra Institute of Higher Education and Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: Italy

ncbi_isolation_source: mammal

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Jerusalem


ncbi_country: Australia: Bungalally; Victoria

ncbi_isolation_source: rhizosphere; bulk soil and roots

ncbi_organism_name: Lelliottia sp. WAP21

ncbi_submitter: Deakin University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus benefaciens

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus benefaciens


ncbi_country: Ireland

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Dickeya solani

ncbi_submitter: Sorbonne University


ncbi_country: Bangladesh

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Freising

ncbi_isolation_source: lab-scale biogas fermenter fed with maize silage

ncbi_organism_name: Acetivibrio mesophilus

ncbi_submitter: Technical university of Munich


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: mucosa of vagina [UBERON:0004983]

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: TNO


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_country: Italy:Sicily; Milazzo harbour

ncbi_isolation_source: sea water sediment collected from a depth of about 5 meters

ncbi_organism_name: Thalassolituus oleivorans MIL-1

ncbi_submitter: MPI BREMEN


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Australia: WA; Esperance

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. ES1-1

ncbi_submitter: Curtin University


ncbi_country: Colombia: Narino

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Narino


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa48

ncbi_submitter: King Abdullah University Science and Technology


ncbi_organism_name: Pyrinomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Switzerland

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Bern


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Yale University


ncbi_organism_name: Enterobacter hormaechei subsp. steigerwaltii

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Sphingobium sp. LMA1-1-1.1

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Gluconobacter cerinus

ncbi_submitter: Cornell University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: EMG


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil from wetland

ncbi_organism_name: Terrimonas ginsenosidimutans

ncbi_submitter: Hankyong National University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: Wound Shoulder Right OPERATIVE PRE INCISION

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_assembly_name: freshwater MAG --- Erken-D7_bin-0123

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: CHA Advanced Research Institute


ncbi_country: USA: South Carolina

ncbi_isolation_source: Low salinity river system

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Active Teaching NextGenSequencing Group (GCAT-SEEK)


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Pseudoflavonifractor sp.


ncbi_organism_name: Chloroflexota bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: bioreactor

ncbi_submitter: Queensland university of technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: China: Rudong; Jiangsu

ncbi_organism_name: Agrobacterium salinitolerans

ncbi_submitter: Northeast institute of Geography and Agroecology, Chinese Academy of Sciences


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Kitasatospora fiedleri

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell isolated from 0.8 micron filter from seawater collected from 1m depth in the Scripps Institution of Oceanography Pier

ncbi_organism_name: SAR86 cluster bacterium SAR86E

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium SAR86E


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: cattle

ncbi_submitter: United State Department of Agriculture


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: skin swab1483 from squamous cell carcinomas patient MST013

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_isolation_source: grass rhizosphere

ncbi_organism_name: Pseudomonas sp. B329

ncbi_submitter: Institut de Recherche LABIRIS


ncbi_country: Nigeria

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Cepheid


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Candidatus Multivoraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;f__Candidatus Multivoraceae;x__unclassified Candidatus Multivoraceae;s__Candidatus Multivoraceae bacterium


ncbi_country: France: Creteil

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CHU de Rennes


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Methylobacterium radiotolerans

ncbi_submitter: Universidade de Brasilia


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Ructibacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CHU Arnaud de Villeneuve Montpellier


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_organism_name: Roseateles sp. DB2

ncbi_submitter: Dongguk University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_organism_name: Sphingobacterium spiritivorum

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: PVC group bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_isolation_source: sub-seafloor sulfide deposits

ncbi_organism_name: bacterium BMS3Abin02

ncbi_submitter: JAMSTEC


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: cold seep

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: saline water including plankton

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Uppsala University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Ili; Xinjiang

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_assembly_name: freshwater MAG --- Ki3-D4_bin-560

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rouxiella badensis


ncbi_organism_name: Pseudoruminococcus massiliensis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_country: Germany

ncbi_isolation_source: Shrimps

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: coastal sea water

ncbi_organism_name: uncultured Nitratireductor sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Propionimicrobium sp.

ncbi_submitter: Nanyang Technological University


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: uncultured Chiayiivirga sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New Mexico

ncbi_isolation_source: feces

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Texas Tech University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Gallionella sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Taiwan

ncbi_organism_name: Bacteroides sp. GM023

ncbi_submitter: Food Industry Research and Development Institute


ncbi_isolation_source: fish gut metagenome


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bacteroides xylanisolvens


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: USA: TX

ncbi_isolation_source: chicken liver

ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: Mesorhizobium sp. M0663

ncbi_submitter: Washington State University


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_country: New Zealand: Waimangu

ncbi_isolation_source: hot spring

ncbi_organism_name: Thermus filiformis

ncbi_submitter: Centro Nacional de Pesquisa em Energia e Materiais


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: USA: Carson; CA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Immundisolibacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Mexico

ncbi_submitter: Beijing Institute of Genomics, CAS


ncbi_assembly_name: freshwater MAG --- KTt_bin-1687

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas sp. D2-3

ncbi_submitter: KAUST


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: caecum

ncbi_organism_name: Pseudoflavonifractor sp. An85

ncbi_submitter: Veterinary Research Institute


ncbi_country: United Kingdom

ncbi_isolation_source: clinical sample

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Balearic Islands


ncbi_isolation_source: hospital environment

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: United Kingdom Health Security Agency


ncbi_country: USA: PA

ncbi_isolation_source: dairy cow hide swab

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Australia: Sydney; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: MO

ncbi_isolation_source: granny smith apple

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: MD

ncbi_isolation_source: outbreak

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: DMB SH20160

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Water kefir

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_country: China

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_organism_name: Eubacterium sp.


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: University of Alberta


ncbi_organism_name: Allorhizobium ampelinum

ncbi_strain_identifiers: KFB 254

ncbi_submitter: Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), EP


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Wenyingzhuangia aestuarii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Belgium: Ghent

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ANIWHA


ncbi_country: Canada: Ontario

ncbi_isolation_source: Ground Beef

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Streptomyces chumphonensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: Peadiatric - mop

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Japan

ncbi_submitter: Tokyo Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Armatimonadota;c__;o__;f__;g__Candidatus Nitrosymbiomonas;s__Candidatus Nitrosymbiomonas proteolyticus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__Armatimonadota incertae sedis;g__Candidatus Nitrosymbiomonas;s__Candidatus Nitrosymbiomonas proteolyticus


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium GW2011_GWD2_36_198


ncbi_organism_name: Pyramidobacter piscolens

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Moraxella catarrhalis 12P80B1

ncbi_submitter: Center for Genomic Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_submitter: Tarim University


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Queensland


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Ruminococcus sp.


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. TH177-1LC

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. TH177-1LC


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: South China University of Technology


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_organism_name: Thalassolituus alkanivorans

ncbi_submitter: fudan university


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_assembly_name: freshwater MAG --- MJ110629A_bin-037

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: University of California, Riverside


ncbi_country: United Kingdom

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Swansea University


ncbi_country: United Kingdom: Leamington Spa

ncbi_isolation_source: garden soil

ncbi_organism_name: Rhodococcus sp. SC4

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. SC4


ncbi_organism_name: Aequorivita sp.

ncbi_submitter: Ocean University of China


ncbi_country: China: Shizuishan

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Anhui Medical University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar 58:l,z13,z28:z6


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Nanyang Technological University


ncbi_country: USA: South Carolina

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: SWINE CARCASS

ncbi_organism_name: Escherichia coli

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna


ncbi_country: Japan: Chiba

ncbi_isolation_source: Water

ncbi_organism_name: Erythrobacter sp. KY5

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Bacillus badius NBRC 15713

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Pseudobacillus;s__Pseudobacillus badius;x__Bacillus badius NBRC 15713


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Anaeromassilibacillus sp.

ncbi_submitter: EMG


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Aneurinibacillus migulanus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolate: Patient #38

ncbi_isolation_source: Skin

ncbi_organism_name: Cutibacterium acnes

ncbi_strain_identifiers: Patient #38

ncbi_submitter: sapienza university


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: subgingival dental plaque

ncbi_organism_name: Porphyromonas gingivalis

ncbi_strain_identifiers: KCOM 2797

ncbi_submitter: Chosun University


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Portugal: Porto

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: Brazil: Botucatu

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: PA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: India

ncbi_isolation_source: seafood

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Nitte University Centre for Science Education and Research


ncbi_organism_name: Salmonella sp. C3318

ncbi_submitter: Sichuan University


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong CDC


ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: ARRIAM


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: University of Alberta


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 229

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_isolation_source: GM-anode biofilm

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Queensland


ncbi_submitter: Norwegian Defence Research Establishment


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. Je 1-4 4N24_ara

ncbi_submitter: Bielefeld University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__unclassified Streptomyces;s__Streptomyces sp. Je 1-4 4N24_ara


ncbi_country: USA: Vacaville city on Solano county

ncbi_isolation_source: Biological material

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.1 filter

ncbi_organism_name: Bdellovibrionales bacterium GWA1_52_35

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universiteit Gent


ncbi_country: New Zealand: Taranaki

ncbi_submitter: Massey University


ncbi_country: Netherlands

ncbi_isolation_source: rectal swab

ncbi_submitter: University Medical Center Groningen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Massachusetts

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Houston; Texas; Michael E. DeBakey VA Medical Center

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia: Perak

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Mangrovimonas xylaniphaga

ncbi_submitter: UNIVERSITI SAINS MALAYSIA


ncbi_isolation_source: Ileo-caecum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Facultad de Quimica


ncbi_submitter: North West University


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Kitchen C

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Maryland Baltimore


ncbi_country: China: Changzhou;Jiangsu

ncbi_isolation_source: Aerobic activated sludge

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: South China University of Technology


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_organism_name: Enterobacter cloacae complex sp. IR5378

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5378


ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Princeton University


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: isolate

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Shandong University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute of Health, Department of Medical Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lachnospira eligens


ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Sahlgrenska University Hospital


ncbi_isolate: SPRUCE 223

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_strain_identifiers: SPRUCE 223

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Pacific Ocean

ncbi_isolation_source: basaltic crustal fluids

ncbi_organism_name: Nitrospirae bacterium JdFR-86

ncbi_submitter: University of Hawaii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium JdFR-86


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_assembly_name: freshwater MAG --- Loclat_bin-15156

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_assembly_name: Rumen uncultured genome RUG633

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Laboratorios veterinarios Lasser


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Oviedo


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Agrofirma Urozhaynaya LLC


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: abscess l neck

ncbi_organism_name: Propionibacterium sp. HMSC065F07

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1030

ncbi_submitter: The Chinese University of Hong Kong


ncbi_submitter: Washington University School of Medicine


ncbi_country: France

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Trueperella sp. HMSC08H06


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Palmer LTER


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Ghana: Pakro

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_country: China

ncbi_isolation_source: iron mine soil

ncbi_organism_name: Nocardioides immobilis

ncbi_strain_identifiers: CCTCC AB 2017083

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Broiler parent61

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Queensland


ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV086

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Leptospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: lab selection

ncbi_organism_name: Streptococcus iniae

ncbi_strain_identifiers: ISNO

ncbi_submitter: USDA, ARS


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_country: South Africa

ncbi_isolation_source: CSF + Blood

ncbi_submitter: WTSI


ncbi_organism_name: Flavisphingomonas formosensis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_isolation_source: river water

ncbi_organism_name: Duganella levis

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDX8P19P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_country: Sweden

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Stenotrophomonas sp. C2852

ncbi_submitter: Instituto Nacional de Rehabilitacion


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__;c__;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Coneutiohabitans;s__Candidatus Coneutiohabitans thermophilus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Coneutiohabitans;s__Candidatus Coneutiohabitans thermophilus


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Enterobacter sp. RHBSTW-00422

ncbi_submitter: The REHAB Consortium


ncbi_country: USA: Stanford campus; California

ncbi_organism_name: Rosenbergiella nectarea subsp. apis

ncbi_submitter: Complutense University of Madrid


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Polystyrene-feeding group superworm gut

ncbi_organism_name: Candidatus Enterococcus leclercqii

ncbi_submitter: The University of Queensland


ncbi_country: USA: Boston; MA

ncbi_isolation_source: Non-ICU

ncbi_organism_name: Staphylococcus aureus M0240

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella aerogenes


ncbi_isolation_source: Mouth of wild rat

ncbi_organism_name: Streptococcus ferus DSM 20646

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus ferus;x__Streptococcus ferus DSM 20646


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Malaysia: Johor Bharu

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_country: USA: PA

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Shewanella sp. Actino-trap-3

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: India: Madurai

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus alvei

ncbi_submitter: Madurai Kamaraj University


ncbi_country: China: Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Firmicutes bacterium CAG:176

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:176


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_country: Russia: Moscow

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alphaproteobacteria bacterium UBA1330


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centre pasteur du Cameroun


ncbi_country: Cote d Ivoire

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom: Bristol

ncbi_organism_name: Candidatus Riesia pediculicola

ncbi_strain_identifiers: BR-HL

ncbi_submitter: InfoBoss Research Center


ncbi_isolation_source: human

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Smithella sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-358

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Saprospiraceae bacterium

ncbi_strain_identifiers: new MAG-358

ncbi_submitter: Micoorganism


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shenzhen

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: BGI


ncbi_country: Hong Kong

ncbi_isolation_source: Stanley WWTPs_10 WWTPs influent

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Blautia excrementigallinarum

ncbi_submitter: Quadram Institutte


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: England

ncbi_isolation_source: Cecal contents

ncbi_organism_name: Collinsella sp. UBA1827

ncbi_submitter: University of Queensland


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam