ncbi_country: Denmark

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Carlsberg Research Laboratory


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_genome_representation: full

ncbi_organism_name: Roseobacter sp. HKCCD9037

ncbi_submitter: Chinese University of Hong Kong


ncbi_assembly_level: Scaffold

ncbi_country: China

ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB64

ncbi_submitter: Soochow University


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: Chinese sauerkraut

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Hangzhou Medical College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Vibrio parahaemolyticus RIMD 2210633

ncbi_refseq_category: reference genome

ncbi_submitter: Osaka Univ.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus RIMD 2210633


ncbi_country: Kenya: Nairobi

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Texas Health Science Center


ncbi_isolation_source: not available

ncbi_submitter: SC


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei DL35

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Escherichia coli

ncbi_submitter: Colorado State University


ncbi_country: Italy

ncbi_isolation_source: minced meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


gtdb_representative: t

ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Shaanxi

ncbi_isolation_source: chicken cloacal swab

ncbi_submitter: China Agricultural University


ncbi_country: New Zealand

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Atlantic Beach; North Carolina

ncbi_isolation_source: Ovicells

ncbi_organism_name: Candidatus Endobugula sertula

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Yersinia sp. 2105 StPb PI

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__unclassified Yersinia (in: enterobacteria);s__Yersinia sp. 2105 StPb PI


gtdb_type_species_of_genus: t

ncbi_assembly_level: Chromosome

ncbi_country: Germany: Munich

ncbi_isolation_source: organic material

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: Max von Pettenkofer-Institut

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Synechococcaceae cyanobacterium

ncbi_submitter: Yantai University


ncbi_country: USA: Boston

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides distasonis CL03T12C09

ncbi_submitter: Brigham & Women's Hospital


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Canada: Lacombe

ncbi_organism_name: Treponema porcinum

ncbi_submitter: AAFC


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Staphylococcus capitis


ncbi_organism_name: Pluralibacter gergoviae

ncbi_submitter: EMG


ncbi_isolation_source: bioreactor

ncbi_organism_name: Mesotoga sp. UBA5825

ncbi_submitter: University of Queensland


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus urinae

ncbi_submitter: Loyola University Chicago


ncbi_country: Germany

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Treponema sp. OMZ 789

ncbi_strain_identifiers: OMZ 789

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater from Yellow Sea

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alcaligenaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Stanford University

ncbi_isolation_source: household tap filter

ncbi_organism_name: Proteobacteria bacterium ST_bin15

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium ST_bin15


ncbi_country: Australia: WA; Oasis Farms

ncbi_organism_name: Mesorhizobium sp. WSM4898

ncbi_submitter: Murdoch University


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Isoptericola variabilis


ncbi_country: USA: Lake Erie

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Toledo


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_organism_name: Roseateles saccharophilus

ncbi_strain_identifiers: DSM 654

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: BALF

ncbi_submitter: Shenzhen University


ncbi_country: Ethiopia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Public Health and the Environment (RIVM)


ncbi_country: China: Guangxi

ncbi_isolation_source: Pus

ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Absicoccus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0002

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_organism_name: uncultured bacterium


ncbi_country: USA

ncbi_isolation_source: Air filter

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Escherichia coli EC1846

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Institute for Advanced Biosciences, Keio University


ncbi_organism_name: Brevundimonas aurantiaca


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IL; Urbana

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. MMG1533

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: the First Medicine Centre, Chinese PLA General Hospital


ncbi_isolation_source: fish metagenome

ncbi_organism_name: uncultured Rickettsiella sp.

ncbi_submitter: EMG


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Brazil: Rio Grande do Sul

ncbi_isolation_source: Sunflower (Helianthus annuus) rhizosphere

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: UFRGS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halanaerobiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Acinetobacter faecalis

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences


ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Nitratiruptor sp.

ncbi_submitter: Portland State University


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_isolation_source: serum

ncbi_organism_name: Candidatus Mycoplasma haematohominis

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_isolation_source: mouse gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: MES reactor inoculated with Red Sea brine pool sample

ncbi_organism_name: Methylophaga sp.

ncbi_submitter: KAUST


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: USA: New York

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_assembly_name: Rumen uncultured genome RUG10172

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: pus

ncbi_submitter: University Medical Center Groningen


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: LBMM 6401

ncbi_submitter: University of the Basque Country


ncbi_country: Brazil

ncbi_isolation_source: chicory

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo


ncbi_submitter: Chongqing Medical University


ncbi_country: Kenya: Laikipia

ncbi_isolation_source: Camel

ncbi_submitter: University of Zurich


ncbi_assembly_name: Rumen uncultured genome RUG13077

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_organism_name: Pseudoalteromonas sp. XMcav2-N-2

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Feces

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Yangzhou University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum


ncbi_submitter: Sichuan University


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Butyribacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Washington

ncbi_isolation_source: Public Health Laboratory

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M University - Corpus Christi


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium scardovii

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Streptomyces candidus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-409-P01

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: PA

ncbi_isolation_source: avian liver (Gallus gallus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_strain_identifiers: BT-QVLC

ncbi_submitter: IGSB, Department of Human Genetics

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Johnevansiales;f__Candidatus Johnevansiaceae;g__Candidatus Portiera;s__Candidatus Portiera aleyrodidarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Johnevansiales;f__Candidatus Johnevansiaceae;g__Candidatus Portiera;s__Candidatus Portiera aleyrodidarum;x__Candidatus Portiera aleyrodidarum BT-QVLC


ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: South Korea: Haeeundae; Busan

ncbi_isolation_source: Sea water

ncbi_organism_name: Ramlibacter cellulosilyticus

ncbi_submitter: Dongguk University


ncbi_country: USA: Delaware

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_submitter: VEIL Bradyrhizobium group


ncbi_organism_name: Leeuwenhoekiella palythoae

ncbi_submitter: Tang lab


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Agrobacterium arsenijevicii

ncbi_strain_identifiers: KFB 330

ncbi_submitter: University of Belgrade, Faculty of Agriculture


ncbi_country: Canada: Montreal

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Guangxi

ncbi_organism_name: Salmonella sp. gx-h1

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Poultry

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_country: China: Anhui

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_strain_identifiers: B256;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Formosimonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Allomuricauda sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces lincolnensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Ontario

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WAC00303

ncbi_submitter: University of Toronto


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Ralstonia pseudosolanacearum


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Mississippi

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Streptomyces sp. NPDC079167


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Washington University School of Medicine


ncbi_assembly_name: freshwater MAG --- A1_bin-315

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_country: Japan:Osaka; Toyonaka

ncbi_isolation_source: Homo sapiens

ncbi_organism_name: Mycolicibacterium sp. TY66

ncbi_submitter: Department of Infection Metagenomics


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 2-011-08_S1_C3

ncbi_submitter: IGS


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Sporosarcina sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Streptomyces sp. NPDC000678


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Australia: Moreton Bay; Queensland

ncbi_isolation_source: brown sand

ncbi_organism_name: Marivirga harenae

ncbi_submitter: Korea research institute of Bioscience and Biotechnology


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: JiangSu

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Paraburkholderia bannensis

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Sinorhizobium fredii

ncbi_strain_identifiers: USDA 197

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Hoylesella timonensis


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: gut

ncbi_organism_name: Yokenella regensburgei


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: Colombia: Bogota

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: Ground beef from beef processing plant

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptomyces sp. NPDC049954

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: clinical material

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: University Hospital Tuebingen


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Competibacteraceae bacterium UBA4410

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Competibacteraceae bacterium UBA4410


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Stercoripulliclostridium;s__Candidatus Stercoripulliclostridium merdipullorum


ncbi_organism_name: Actinoplanes sp. NPDC049265


ncbi_country: Germany: Thueringia

ncbi_isolation_source: human blood culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cluster of Excellence Balance of the Microverse


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: EMG


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA7787


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: unknown

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_isolation_source: sheep gut metagenome


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Center for Microbial Communities


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Hyphomicrobium sp.


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Brevinematales bacterium


ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: uncultured Oleiharenicola sp.


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University Medicine Greifswald


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Alcanivoracaceae bacterium MT1

ncbi_submitter: Atmiya University


ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Salmonella sp. C3326

ncbi_submitter: Sichuan University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Nitriliruptorales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Complete genome of Falsihalocynthiibacter sp. SS001

ncbi_organism_name: Falsihalocynthiibacter sp. SS001

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: NH 85

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Gallionella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: Yonsei University


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: (MES) mesopelagic zone

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: China CDC


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_submitter: EMG


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient sediment

ncbi_organism_name: Ruegeria sp. HKCCA5426

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: [Eubacterium] sulci

ncbi_submitter: J. Craig Venter Institute


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Ochrobactrum sp. P6BSIII

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: bacterium D16-56

ncbi_submitter: Chinese Academy of Science


ncbi_country: Algeria

ncbi_isolation_source: soil

ncbi_organism_name: Bosea sp. FBZP-16

ncbi_submitter: Laboratory of Applied Microbiology, University of Bejaia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. FBZP-16


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Bangladesh

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_organism_name: Mucilaginibacter sp. cycad4

ncbi_submitter: University of California, Los Angeles


ncbi_country: India: ICRISAT campus in Hyderabad

ncbi_isolation_source: compost [ENVO:00002170]

ncbi_organism_name: Streptomyces sp. CAI-85

ncbi_submitter: ICRISAT


ncbi_organism_name: Pseudomonas juntendi


ncbi_organism_name: uncultured Romboutsia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lausanne University Hospital


ncbi_country: Taiwan: Mailiao Township; Yunlin County

ncbi_isolation_source: farmland

ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-O16

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: not known


ncbi_country: USA: Wisconsin

ncbi_isolation_source: nasal lavage

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Utah


ncbi_country: India

ncbi_isolation_source: Sea-food

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: RAJIV GANDHI CENTRE FOR BIOTECHNOLOGY


ncbi_isolation_source: vulva

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Metabacillus fastidiosus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus MISS6012

ncbi_submitter: Broad Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured PS1 clade bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__environmental samples;s__uncultured PS1 clade bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: periodontal pocket

ncbi_organism_name: Tannerella forsythia 92A2

ncbi_submitter: TIGR


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Delongbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Delongiibacteriota;x__unclassified Candidatus Delongbacteria;s__Candidatus Delongbacteria bacterium


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pakistan

ncbi_isolation_source: Halophyte Rhizosphere

ncbi_organism_name: Halobacillus halophilus

ncbi_submitter: Forman Christian College


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSUF


ncbi_country: Georgia: Tbilisi

ncbi_submitter: Eliava IBMV

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: France

ncbi_isolate: clinical strain from anonymous patient of Nancy Hospital

ncbi_isolation_source: cerebral abscess

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: UNIVERSITY OF OXFORD


ncbi_country: Cambodia

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agbeni


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_isolation_source: human gut

ncbi_organism_name: Peptoniphilus obesi


ncbi_isolation_source: cervix

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Institutes of Biology and Medical Sciences


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: New Zealand: Tapuata Stream

ncbi_isolation_source: water

ncbi_submitter: Massey University


ncbi_organism_name: Bartonella sp. TS25HLJMH

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: South Korea: Yeongdeok-gun; Gyeongsangbuk-do

ncbi_isolation_source: Stream water

ncbi_organism_name: Phreatobacter aquaticus

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Sphingomonas sp. CCH9-E2

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Sweden

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: Prevotella jejuni

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Roseiarcus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Rhizobium favelukesii

ncbi_submitter: CEBITEC


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1131

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces from Zagget the koala

ncbi_organism_name: Synergistes sp. Zagget9

ncbi_submitter: University of Queensland


ncbi_submitter: Chongqing Medical University


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Thailand

ncbi_isolation_source: urine

ncbi_submitter: JCVI


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1416


ncbi_isolation_source: sheep gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Italy: Panarea

ncbi_organism_name: Gimesia panareensis

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_isolation_source: blood sample from patient with bacteremia

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CIG1057


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Aeromonas sp. s5

ncbi_submitter: Hangzhou CDC


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Diaphorobacter ruginosibacter

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: Biogas plant

ncbi_organism_name: Clostridium sp. ZBS15

ncbi_submitter: KULeuven


ncbi_isolation_source: Cerebral spinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: The laboratory of genetics and plant breeding, The National institute of Agronomy of Tunis


ncbi_organism_name: Staphylococcus aureus M72087

ncbi_submitter: Broad Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Dialister sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IL

ncbi_isolation_source: soil

ncbi_submitter: Cornell University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Proteus terrae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Acidovorax sp. WCS2018Noco2-34

ncbi_submitter: Utrecht University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: hospital

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Denmark

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei TSV44

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Nebraska

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Fusobacterium necrophorum


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Maribacter arcticus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Sudan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Khartoum


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Algeria

ncbi_isolation_source: ready-to-eat foods

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Sciences of Food Production (ISPA)


ncbi_organism_name: Frigoribacterium endophyticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_organism_name: Polymorphobacter multimanifer

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: EMG


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Saprospiraceae bacterium UBA2365


ncbi_country: Ghana

ncbi_isolation_source: cocoa bean heap fermentation

ncbi_organism_name: Lactiplantibacillus fabifermentans DSM 21115

ncbi_submitter: Shanghai Majorbio


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F16104

ncbi_submitter: Broad Institute


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Duke University


ncbi_organism_name: Brucella suis 1330

ncbi_submitter: Virginia Bioinformatics Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Pseudomonas sp. USHLN015

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Lampropedia aestuarii

ncbi_strain_identifiers: YIM MLB12

ncbi_submitter: Yunnan University


ncbi_country: Germany: Berlin

ncbi_isolation_source: feces

ncbi_organism_name: Lactonifactor longoviformis

ncbi_submitter: UCSF


ncbi_country: Russia: Yakutia

ncbi_isolation_source: deep soil layers

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: State Research Center for Applied Microbiology and Biotechnology


ncbi_country: South Korea: Chungcheongbuk-do

ncbi_isolation_source: cucumber

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: FORC 064

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Industrial ABE fermentation

ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: LanzaTech Inc


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira;s__Lachnospira hominis (ex Liu et al. 2021)


ncbi_country: Russia: Republic of Altai; Kosh-Agach District

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague institute "Microbe"


ncbi_isolation_source: Type strain of Lact. xylosus from  Anchu  mash

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Brigham Young University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Aminobacterium mobile

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_assembly_name: freshwater MAG --- LJ_bin-0460

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Bradyrhizobium sp. HKCCYLRH1065

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Metabacillus dongyingensis

ncbi_submitter: Johannes Gutenberg-University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Rhizobium sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_organism_name: uncultured Azospirillaceae bacterium


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Micromonospora citrea

ncbi_submitter: Dalian University of Technology


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Idiomarina loihiensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Anhui University of Science and Technology Affiliated Fengxian hospital ,Shanghai ,China


ncbi_organism_name: Salmonella sp. SKLX062598

ncbi_submitter: Zhejiang university


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_submitter: Kyoto University


ncbi_organism_name: uncultured Peptoniphilaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Blautia faecis


ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Gemmiger formicilis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin2

ncbi_strain_identifiers: MDV bin2

ncbi_submitter: Monash University


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: cold seep

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing; Haidian District; Zhongguancunnandajie; Chinese Agricultral of Academy Sciences

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Chinese Academy of Agricultral Science


ncbi_submitter: Ghent University


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Peribacillus sp. YIM B13481

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Peribacillus;x__unclassified Peribacillus;s__Peribacillus sp. YIM B13481


ncbi_organism_name: Aerococcus viridans

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: uncultured Rickettsia sp.


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: Germany

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_country: Spain: Madrid

ncbi_organism_name: Klebsiella pneumoniae RYC492

ncbi_submitter: Laboratorio de Biología Estructural y Molecular, Facultad de Ciencias, Universidad de Chile


ncbi_isolation_source: human skin

ncbi_organism_name: Staphylococcus succinus

ncbi_submitter: NIH/NHGRI


ncbi_country: China: Hangzhou

ncbi_isolation_source: Broncho-Alveolar Lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: United Kingdom

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Alistipes communis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Seattle

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Laval


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: WA

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: University of Washington


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: China: Southwest

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Acinetobacter sp. SwsAc6

ncbi_submitter: SOUTHWEST MEDICAL UNIVERSITY


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: USDA-ARS


ncbi_country: Australia: Five Islands

ncbi_submitter: OUTBREAK


ncbi_assembly_name: Rumen uncultured genome RUG10839

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Japan: Hokkaido

ncbi_isolate: Mycoplasma arginini #HAZ145_1

ncbi_isolation_source: cow s milk [ENVO_0010035]

ncbi_organism_name: Mycoplasmopsis arginini

ncbi_strain_identifiers: Mycoplasma arginini #HAZ145_1;HAZ145_1

ncbi_submitter: National Institute of Animal Health, National Agriculture and Food Research Organization


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus sp. AFS077874

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS077874


ncbi_country: China: Changchun

ncbi_isolation_source: urine

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: flour/flour products

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Zhejiang

ncbi_isolation_source: Tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: Sweden

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_country: China: Shuozhou

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium populisoli

ncbi_submitter: Beijing Forestry University


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_isolation_source: Groin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_country: USA: Chicago

ncbi_isolation_source: surface biofilm from hospital sink drain

ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: Northwestern University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Tropheryma whipplei str. Sali28

ncbi_submitter: ebi


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0222R

ncbi_submitter: Broad Institute


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Sanya

ncbi_isolation_source: coral

ncbi_organism_name: bacterium SCSIO 12741

ncbi_strain_identifiers: SCSIO 12741

ncbi_submitter: South China Sea Institute of Oceanology

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__bacterium SCSIO 12741


ncbi_organism_name: Gracilimonas sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: AAFC


ncbi_country: China: Henan

ncbi_isolation_source: Hydrothorax and Ascites

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Idiomarina sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R363;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Ireland

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University College Cork


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 106

ncbi_organism_name: Staphylococcus cohnii

ncbi_strain_identifiers: SNUC 5

ncbi_submitter: University of Calgary


ncbi_submitter: University of Connecticut


ncbi_country: United Kingdom:Warwick

ncbi_organism_name: Methylosinus trichosporium OB3b

ncbi_submitter: University of Waterloo


ncbi_country: Australia: WA; Badgingarra

ncbi_organism_name: Mesorhizobium sp. B2-5-2

ncbi_submitter: Curtin University


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Iran: Esfhan

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pasteur Institute of Iran


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: throat

ncbi_submitter: The University of Queensland


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA121

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Acetobacter thailandicus

ncbi_submitter: Cornell University


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with retrograde maize

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R737;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Brucella anthropi

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Akkermansia muciniphila


ncbi_submitter: University of Melbourne


ncbi_organism_name: Cobetia amphilecti

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Africa: Gauteng

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University College Cork


ncbi_organism_name: Plantactinospora veratri

ncbi_submitter: Jiangsu Normal University


ncbi_isolation_source: meat

ncbi_organism_name: Pseudomonas antarctica

ncbi_submitter: CEBITEC


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient57 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_organism_name: Faecalibacterium prausnitzii L2-6

ncbi_submitter: metaHIT


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alistipes putredinis


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_submitter: SC


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Burkholderia pseudomallei


ncbi_assembly_name: freshwater MAG --- MJ-2014-D5_bin-437

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: JCVI


ncbi_organism_name: Shigella boydii

ncbi_submitter: Instituto Leonidas e Maria Deane - Fiocruz Amazonia


ncbi_country: Japan

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_organism_name: Methylibium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: India: Amritapuri; Kollam; Kerala

ncbi_isolation_source: Domestic sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Amrita VIswa Vidyapeetham


ncbi_organism_name: Pedobacter flavus

ncbi_submitter: Kyonggi university


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Infectious Diseases Area, Respiratory Infection and Antimicrobial Resistance Group, Biogipuzkoa Heal


ncbi_organism_name: Enterobacter hormaechei


ncbi_isolation_source: Subsurface water samples were collected at 10 m in Niskinbottles at a station located 8 km west of the mouth of Yaquina Bay; OR

ncbi_organism_name: Thalassobium sp. R2A62

ncbi_submitter: Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Streptomyces griseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Hiroshima University


ncbi_country: USA: Atlanta

ncbi_isolation_source: Digestive tract

ncbi_organism_name: Staphylococcus gallinarum

ncbi_submitter: Emory University


ncbi_country: Brazil: Parauapebas; Para

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium paraense

ncbi_submitter: University of Trento


ncbi_country: India: Polo; Shillong; Meghalaya

ncbi_isolation_source: chicken

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Moscow region

ncbi_isolation_source: genitourinary system

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: SRCAMB


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: China: Anhui

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Pericoronitis

ncbi_organism_name: Dialister pneumosintes

ncbi_strain_identifiers: KCOM 1685

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_organism_name: Pseudomonas sp. 8209

ncbi_submitter: UC San Diego


ncbi_country: USA: NC

ncbi_isolation_source: Clinical Isolate

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Vampirovibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Buffalo Point; MB

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: Colombia: Risaralda

ncbi_isolation_source: Blood culture

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_country: India

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_organism_name: Luteolibacter soli

ncbi_submitter: shandong unviersity


ncbi_country: Germany

ncbi_isolation_source: starter culture

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_country: China: Hong Kong

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Pakistan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_country: China: Sanjiang County; Guangxi Province

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Roseburia sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0269R

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Taiwan

ncbi_submitter: Chang Gung Memorial Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Castellaniella sp.

ncbi_submitter: University of Oklahoma


ncbi_assembly_name: IMG-taxon 2617270923 annotated assembly

ncbi_organism_name: Rhizobium sp. AN5

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Virgibacillus halodenitrificans

ncbi_submitter: URMITE


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_country: Japan

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Butyricimonas virosa DSM 23226

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Odoribacteraceae;g__Butyricimonas;s__Butyricimonas virosa;x__Butyricimonas virosa DSM 23226


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: New Zealand

ncbi_isolation_source: cheese starter

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: CIRM-BIA 84

ncbi_submitter: Brigham Young University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: MN

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 274

ncbi_submitter: SC


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: endosphere

ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: NIOO KNAW


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Abiotrophia sp.


ncbi_country: Australia

ncbi_isolation_source: ear

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Democratic Republic of the Congo

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Thailand: Uttaradit

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kasetsart University


ncbi_isolation_source: wastewater metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Pedobacter mendelii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces sp. NPDC017082

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Salmonella sp. s56259

ncbi_submitter: Zhejiang university


ncbi_submitter: Normandie Univ


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Enterococcus canintestini


ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Washington University in Saint Louis


ncbi_isolate: AOP43_B1_surf _bin _1

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP43_B1_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Bacillus cereus group sp. BC326

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC326


ncbi_organism_name: Mediterraneibacter faecis


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ascidiaceihabitans sp.

ncbi_submitter: Linnaeus University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Nocardiopsis merdipullorum

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Os S e4

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp. NPDC091879

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Kitasatospora sp. NPDC048194


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- AM-2014-D2_bin-148

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_organism_name: Syntrophomonadales bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;c__Syntrophomonadia;o__Syntrophomonadales;x__unclassified Syntrophomonadales;s__Syntrophomonadales bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter sp. 22325

ncbi_submitter: Yantai University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome


ncbi_assembly_name: freshwater MAG --- MJ-2014-D5_bin-408

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Inverness


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Trueperaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: SiChuan

ncbi_isolation_source: pig farm

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_organism_name: Weizmannia sp. CD-2023

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: China:Zhejiang province

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Germany: Sylt

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_assembly_name: freshwater MAG --- Loc080925-6m_bin-0597

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Moscow region

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SRCAMB


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: Switzerland

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: Pandoraea apista

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Brucella abortus NI518

ncbi_submitter: Broad Institute


ncbi_country: Thailand: Nakhonratchasrima

ncbi_isolation_source: rectal swab

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Pseudomonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Mitsuokella multacida

ncbi_submitter: BGI-Shenzhen


ncbi_country: Canada: Mont-Laurier

ncbi_isolation_source: infected lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Egypt: Alexandria

ncbi_submitter: University of East Anglia


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Halomonas sp. C22

ncbi_submitter: Institute of Biotechnology, Vietnam Academy of Science and Technology


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Fujian

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Rumen uncultured genome RUG474

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Xinjiang

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces mutabilis

ncbi_submitter: Tarim University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: China: Jiangxi; Yongping

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_country: Viet Nam

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG