ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Stanford University School of Medicine


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Maledivibacter sp.

ncbi_submitter: The University of Melbourne


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Guizhou university


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Anaerotruncus colihominis

ncbi_submitter: EMG


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ectopseudomonas chengduensis

ncbi_submitter: IBR-CONICET


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_organism_name: uncultured Prevotella sp.


ncbi_assembly_name: Rumen uncultured genome RUG14003

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: orthopedic device (ODRI) sonication fluid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidade Federal de Sao Paulo (UNIFESP)


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Varibaculum cambriense

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Colombia: Santander de Quilichao

ncbi_isolation_source: cassava fermentation tank

ncbi_organism_name: Pseudomonadaceae bacterium UBA5811

ncbi_submitter: University of Queensland


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Candidatus Purcelliella pentastirinorum

ncbi_submitter: University of Hawaii at Manoa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Purcelliella;s__Candidatus Purcelliella pentastirinorum


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Clostridioides sp. ES-S-0190-01

ncbi_submitter: Northern Arizona University


ncbi_assembly_level: Chromosome

ncbi_assembly_name: E coli IVRI_FBI_606

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Phycicoccus elongatus

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Lower Respiratory Tract Secrection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Korea Polar Research Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Leibniz Institute of Photonic Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_submitter: Crop Diseases, Pests, Genetics Research


ncbi_organism_name: uncultured Algoriphagus sp.

ncbi_submitter: EMG


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Brachybacterium fresconis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Streptomyces sp. NPDC012389

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


gtdb_representative: t

ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Sphingopyxis terrae subsp. ummariensis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: UNIVERSITY ALGIERS 1 Benyoucef BENKHEDDA


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lachnospira sp.


ncbi_organism_name: Candidatus Megaera sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Candidatus Megaera;x__unclassified Candidatus Megaera;s__Candidatus Megaera sp.


ncbi_organism_name: Limosilactobacillus oris


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: KU Leuven


ncbi_submitter: University Hospital of Besancon


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5268

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5268


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EBI


ncbi_assembly_name: freshwater MAG --- MJ-2014-D6_bin-178

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Parasutterella sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: uncultured Phaeodactylibacter sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Kingella oralis

ncbi_submitter: EMG


ncbi_country: USA: North Carolina

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: NABI 331

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_organism_name: uncultured Acidimicrobiia bacterium


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: GA; Athens

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Vibrio diazotrophicus

ncbi_submitter: University of Georgia


ncbi_organism_name: Candidatus Electrothrix gigas

ncbi_submitter: University of Antwerp


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Germany: Bonn

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Technische Universitaet Dresden, Medical Faculty 'Carl Gustav Carus'


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: DTA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phocaeicola abscessus


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_strain_identifiers: Duyster

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Valbuzzi;x__Leptospira interrogans serovar Valbuzzi str. Duyster


ncbi_country: China

ncbi_organism_name: Desulfovibrio sp. ZJ369

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: gut

ncbi_organism_name: Bacteroides sp. 47

ncbi_submitter: Ming Chuan University


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: Rectum

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Wadsworth Center - NYS DOH


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Bhaia

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIFESP


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22472;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Croatia: Split

ncbi_isolation_source: urinary tract infection

ncbi_submitter: AstraZeneca


ncbi_assembly_name: Burkholderia  cenocepacia BCC0644

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Australia: Ulupna; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: department of plant and microbial biology


ncbi_submitter: China Agricultural University


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. L-M44

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0498

ncbi_submitter: Broad Institute


ncbi_country: Switzerland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium GWA2_34_9


ncbi_organism_name: Bacillus cereus

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Arizona

ncbi_isolation_source: Implant infection

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: Spain

ncbi_isolation_source: Skin Swab

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_isolation_source: human gut

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: University of Calgary


ncbi_country: China: Jiangsu

ncbi_isolation_source: Dead waterfowl

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_assembly_name: freshwater MAG --- MJ110629B_bin-211

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Hungatella sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Ghana: Greater Accra

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Ghana


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Health Canada


ncbi_country: Slovakia

ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Fusobacterium gonidiaformans


ncbi_country: Pacific Ocean

ncbi_isolation_source: shrimp

ncbi_organism_name: Psychrobacter sp. YP14

ncbi_submitter: The First Institute of Oceanography,SOA


ncbi_organism_name: Aeromonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: Columbia University Medical Center


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Northwestern University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Microbiology, Juntendo University School of Medicine


ncbi_country: Japan:Hokkaido; Sapporo; Hokkaido University; Ono pond

ncbi_isolation_source: pond water

ncbi_organism_name: Comamonadaceae bacterium OS-4

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_submitter: Shandong University


ncbi_isolation_source: Blood

ncbi_submitter: Erasmus University Medical Center


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Aarhus University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Research Network Zoonotic Infectious Diseases


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: EMG


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Micromonospora sp. NPDC051296

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Texas

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Enterobacter sp. Sphag1F

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Technical University of Munich


ncbi_country: Tanzania

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Kenya: Lake Magadi

ncbi_isolation_source: dry sediment

ncbi_organism_name: Evansella sp. LMS18

ncbi_submitter: Georg-August-University Goettingen


ncbi_isolate: AOP31_B2_surf _bin _21

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP31_B2_surf _bin _21

ncbi_submitter: Genoscope


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pantoea sp. UBA7401

ncbi_submitter: University of Queensland


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: IP


ncbi_isolation_source: yogurts

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: Inner Mongolia University


ncbi_country: Spain: Alfacada pond; Ebro delta; Tarragona

ncbi_isolation_source: epidermal mucus of Anguilla anguilla fishes in Ebro delta

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: China: Dongying City; Shandong Province

ncbi_isolation_source: Soil

ncbi_organism_name: Halomonas huangheensis

ncbi_refseq_category: reference genome

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Brazil: Pao Pulo

ncbi_isolation_source: Chrysomya sp.

ncbi_submitter: Biology Centre, ASCR, v.v.i.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Kinetoplastidibacterium;s__Candidatus Kinetoplastidibacterium crithidiae


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Dyella marensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG14106

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: marine

ncbi_organism_name: Afipia sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Segatella copri

ncbi_submitter: Stanford University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Anaerocolumna sp.


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Drexel University College of Medicine


ncbi_country: Germany

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Oman

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Sultan Qaboos University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Aquimarina sp. AD10

ncbi_submitter: University of New South Wales


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: China: Jiangmen

ncbi_organism_name: Ideonella alba

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_submitter: China Agricultural University


ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Actinobaculum sp.

ncbi_submitter: EMG


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Radboud University Nijmegen


gtdb_type_species_of_genus: t

ncbi_organism_name: Gelidibacter algens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Iraq: Basrah

ncbi_isolation_source: burn wound

ncbi_submitter: Al-Basrah University


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_isolation_source: Environmental; soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Costa Rica: San Jose

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Universidad de Costa Rica


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Cellulomonas cellasea DSM 20118

ncbi_submitter: State Key Laborary of Agricultural Microbiology


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Pseudomonas sp. NY15374

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: WA

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Washington


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Oxalobacter sp.

ncbi_submitter: Quadram Institute BioScience


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_country: Taiwan

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: Academia Sinica


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: LC-Ikematsu

ncbi_submitter: National Institute of Technology, Okinawa College


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T55960

ncbi_submitter: Broad Institute


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Lloydbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Lloydiibacteriota;x__unclassified Candidatus Lloydbacteria;s__Candidatus Lloydbacteria bacterium


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Gilvibacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_country: USA

ncbi_isolation_source: castle waste-corn fermentation

ncbi_organism_name: Lactobacillus amylovorus

ncbi_strain_identifiers: CIRM-BIA 669

ncbi_submitter: Brigham Young University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Desulforudis sp. 1190

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Candidatus Desulforudaceae;g__Candidatus Desulforudis;x__unclassified Candidatus Desulforudis;s__Desulforudis sp. 1190


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H23829


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Faeces

ncbi_organism_name: Parvibacter caecicola

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_isolation_source: sputum induced

ncbi_organism_name: Pseudomonas sp. HMSC065H02

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Copenhagen


ncbi_country: Canada: Alberta

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Alberta


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Turku


ncbi_country: China: Chongqing

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Enterobacter cloacae complex sp. ECL405

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. ECL405


ncbi_country: USA: Vidalia Region; GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: EMG


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of Jyvaskyla


ncbi_isolate: Alteromonas macleodii BGP9

ncbi_isolation_source: alginate-supplemented microcosm

ncbi_organism_name: Alteromonas macleodii

ncbi_strain_identifiers: Alteromonas macleodii BGP9

ncbi_submitter: Institute for Chemistry and Biology of the Marine Environment


ncbi_isolation_source: soil

ncbi_organism_name: Treponema sp. UBA1798

ncbi_submitter: University of Queensland


ncbi_organism_name: Pelistega suis

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_9 depth 9-12 cm

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: New Zealand

ncbi_isolation_source: potato tubers

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Symbiopectobacterium;x__unclassified Symbiopectobacterium;s__Candidatus Symbiopectobacterium sp. NZEC151


ncbi_organism_name: Brevundimonas diminuta


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_submitter: Colorado State University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: South Korea

ncbi_isolation_source: ginseng rhizosphere soil

ncbi_organism_name: Mesorhizobium sp. DCY119

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Aerococcus tenax

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium GWC2_55_46


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- A-1_bin-126

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Raoultella ornithinolytica


ncbi_organism_name: Hyunsoonleella sp. 2307UL5-6

ncbi_submitter: Hannam University


ncbi_organism_name: uncultured Halomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Alloalcanivorax xenomutans

ncbi_strain_identifiers: AX

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: RR

ncbi_submitter: University College Cork


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Prolixibacteraceae bacterium


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Syntrophobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Chromatiales bacterium


ncbi_organism_name: uncultured Nitrospirales bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Ruminiclostridium sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA:New York City

ncbi_isolation_source: terrestrial

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: University of Queensland


ncbi_country: Spain

ncbi_isolation_source: Hospital Universitario Valencia Tres cruces (Valencia)

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centro Nacional de Análisis Genómico


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_assembly_name: Rumen uncultured genome RUG13416

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Pseudomonadota bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Pseudomonas fulva


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-K16

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: South Korea: Incheon

ncbi_isolation_source: chicken soup

ncbi_organism_name: Bacillus cereus

ncbi_submitter: FOOD-borne Pathogen Omics Research Center, FORC


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. H27-H5

ncbi_submitter: Ondokuz Mayis University


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Idiomarina sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Salmonella sp. SAL4360

ncbi_submitter: Zhejiang university


ncbi_assembly_name: freshwater MAG --- E14_bin-2811

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: USA: Alaska; Fairbanks

ncbi_organism_name: Bacillus sp. TH12

ncbi_submitter: University of Alaska Fairbanks

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. TH12


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: Singapore

ncbi_isolation_source: Swimming Pool Backwash

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: SCELSE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: sediment from a sea cucumber culture pond

ncbi_organism_name: Polaribacter tangerinus

ncbi_submitter: Shandong Uniwersity at Weihai


ncbi_country: Ireland

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University College Cork


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ICE 597

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Clostridium sp. CAG:307_30_263

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 31

ncbi_strain_identifiers: CHS 31

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 31


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Ruminococcus bromii


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-278

ncbi_submitter: JCVI


ncbi_isolation_source: Panax notoginseng with root rot

ncbi_organism_name: Chryseobacterium sp. MA9

ncbi_submitter: Kunming University of Science and Technology


ncbi_isolation_source: Poultry feed

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: Luxembourg: Schifflange

ncbi_isolation_source: water

ncbi_organism_name: Chitinophagaceae bacterium UBA4128

ncbi_submitter: University of Queensland


ncbi_assembly_name: IMG-taxon 2608642105 annotated assembly

ncbi_organism_name: Sarcina sp. DSM 11001

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Sarcina;x__unclassified Sarcina;s__Sarcina sp. DSM 11001


ncbi_organism_name: Sphingobacterium sp. BIGb0165

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella sp. 79012

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acetoanaerobium sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Italy: Viterbo

ncbi_isolation_source: hot spring water

ncbi_organism_name: Tepidimonas taiwanensis

ncbi_submitter: University of Rome "Foro Italico"


ncbi_organism_name: Ancylobacter pratisalsi

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Hong Kong

ncbi_isolation_source: Stool

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Taiwan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Taiwan University Hospital


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: feces

ncbi_organism_name: bacterium


ncbi_organism_name: Sphingobium xenophagum NBRC 107872

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Scardovia wiggsiae

ncbi_submitter: EMG


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- T7_bin-407

ncbi_isolation_source: lake water

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: France: not applicable

ncbi_isolation_source: sea

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Croatian Veterinary Institute


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 8

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_organism_name: Candidatus Metalachnospira sp.

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Metalachnospira;x__unclassified Candidatus Metalachnospira;s__Candidatus Metalachnospira sp.


ncbi_isolation_source: Groin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_country: Switzerland

ncbi_isolation_source: stool


ncbi_country: Ethiopia

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: University of Exeter


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_organism_name: Burkholderia anthinoferrum

ncbi_submitter: The University of Queensland


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Enterobacter cloacae complex sp. ECL68

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. ECL68


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: NNAb 2494

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Paraburkholderia sp. BL23I1N1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: human skin

ncbi_organism_name: Peptoniphilus lacrimalis

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Pseudomonas haemolytica

ncbi_submitter: University of Balearic Islands


ncbi_country: Viet Nam: Dong Nai

ncbi_isolation_source: urethral exudate

ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: PIHCM 20152

ncbi_submitter: Pasteur Institute of Ho Chi Minh City


ncbi_country: New Zealand

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Massey University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- MJ120620B_bin-224

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Japan

ncbi_isolation_source: hospital sewage

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from newly infected colony LG

ncbi_organism_name: Halodesulfovibrio sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Enterococcus sp. E5-80

ncbi_submitter: Institute of Marine Research


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_organism_name: Sporosarcina contaminans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_country: Russia: Sverdlovsk Region

ncbi_isolation_source: Ready-to-cook meat cutlets

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Hong Kong

ncbi_isolation_source: activated sludge

ncbi_organism_name: Arthrobacter sp. D2

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: France

ncbi_isolation_source: Remains of reconstituted infant formula fed to infant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_country: Russia: Karachayevo-Circassian Republic; Khabez district

ncbi_isolation_source: fetus

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces xinghaiensis

ncbi_strain_identifiers: OlgR

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics GmbH


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Stanford Healthcare


ncbi_country: Czech Republic: C. Budejovice

ncbi_isolation_source: Tissue

ncbi_organism_name: Acinetobacter haemolyticus NIPH 261

ncbi_strain_identifiers: NIPH 261

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Legionellales bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Enterobacteriaceae bacterium UBA6637


ncbi_assembly_name: IMG-taxon 2599185184 annotated assembly

ncbi_organism_name: Mucilaginibacter sp. NFR10

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: USA

ncbi_organism_name: Bartonella sp. AR 15-3

ncbi_submitter: University of Basel


ncbi_isolation_source: groundwater

ncbi_organism_name: Prolixibacteraceae bacterium


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridium sp. AM42-36

ncbi_submitter: BGI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North West University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolate: SPRUCE 663

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 663

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Tidjanibacter sp.


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Yimella sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: surface swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M35965

ncbi_submitter: Broad Institute


ncbi_organism_name: Brevibacterium picturae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Kangwon National University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: environment

ncbi_organism_name: Paenarthrobacter nicotinovorans

ncbi_submitter: University of Melbourne


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces thermoviolaceus subsp. thermoviolaceus

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Streptococcus agalactiae GB00914

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Faecalibacillus faecis

ncbi_submitter: University of Chicago


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: Quadram Institutte


ncbi_country: USA: Shark River Island; NJ

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Allorhizobium sp.


ncbi_organism_name: uncultured Synergistaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Chungbuk University


ncbi_organism_name: Helcococcus bovis

ncbi_submitter: University of Florida


ncbi_organism_name: Bacillus cereus group sp. BceL044

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL044


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Fibrobacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__environmental samples;s__uncultured Fibrobacterota bacterium


ncbi_organism_name: Streptomyces sp. NPDC087310


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Terriglobales bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Monash University


ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing University of Chinese Medicine


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Streptomyces sp. NPDC058284

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Gallintestinimicrobium sp.


ncbi_organism_name: Defluviitoga tunisiensis

ncbi_submitter: University of British Columbia


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: South Africa

ncbi_organism_name: Pantoea allii

ncbi_submitter: University of Georgia


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Ulvibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Kenya: Kisumu

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rickettsia typhi

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- KT5_bin-767

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: Gruyere

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy: Venice Lagoon

ncbi_isolation_source: marine sediment

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: National Institute of Oceanography and Applied Geophysics - OGS


ncbi_country: Canada: Ontario

ncbi_isolation_source: blood

ncbi_submitter: Public Health Ontario laborato

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Vibrio gallaecicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human feces metagenome


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:Delaware Bay; Delaware

ncbi_isolation_source: bay water summer N sample 29 PSU in greater than .8 micron size fraction

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Australia: Five Islands

ncbi_organism_name: Escherichia coli

ncbi_submitter: OUTBREAK


ncbi_country: Martinique

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: University of Florida MREC


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_country: Japan: Aburatsubo Inlet; Kanagawa Prefecture

ncbi_isolation_source: surface saline water

ncbi_organism_name: Reichenbachiella sp. MSK19-1

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: plant matter

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Yamanashi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Pakistan

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium bangladeshense

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_assembly_name: Rumen uncultured genome RUG14728

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Pseudomonas shirazica

ncbi_submitter: VKM/UNIQEM/IEGM


ncbi_country: USA

ncbi_organism_name: Escherichia coli 89.0511

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-2501

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Yunnan Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_country: USA: New York City

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R45(2017)

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: the hong kong university of science and technology


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.768 MAG

ncbi_isolate: bin.768 MAG

ncbi_isolation_source: North Atlantic

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_strain_identifiers: bin.768 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Jiangsu; Suzhou

ncbi_isolation_source: Urinary tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Florida;Grecian Rocks

ncbi_isolation_source: marine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Escherichia coli

ncbi_submitter: King Abdulaziz University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_submitter: Guangxi Institute of Fisheries


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Meijo University faculty of pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: New Zealand:Dunedin

ncbi_isolation_source: oral swab from healthy volunteer

ncbi_organism_name: Streptococcus salivarius M18

ncbi_submitter: University of Otago


ncbi_country: USA: TN

ncbi_isolation_source: ground turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:-;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM N23850


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Oilseed rape rhizosphere

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: USA: Colorado

ncbi_isolation_source: blood

ncbi_organism_name: Bartonella quintana

ncbi_submitter: Division of Vector-Borne Diseases, Centers for Disease Control and Prevention


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-0222

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_submitter: Puyang Oil Field General Hospital


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: Broiler

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_country: Russia: Kazan

ncbi_isolation_source: feces

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Kazan Federal University


ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: USA: Redwood City; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Bangladesh

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_country: USA: FL; Looe Key

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Marisediminitalea aggregata

ncbi_submitter: Meyer Microbes Lab


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Pseudomonas sp. C9-3

ncbi_submitter: University of Mississippi


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Swansea University


ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual K

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- MJ120827A_bin-148

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Nocardia brasiliensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cpo142

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Australia: Erskine River

ncbi_isolation_source: sediments

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin17

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: LAG bin17

ncbi_submitter: Monash University


ncbi_organism_name: Hydrogenobacter thermophilus

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: EMG


ncbi_country: Guinea-Bissau

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Bristol Laboratories

ncbi_organism_name: Streptomyces ossamyceticus

ncbi_strain_identifiers: NRRL B-3822

ncbi_submitter: USDA/ARS/NCAUR


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: KU Leuven


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Australia: Orpheus Island

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Butyrivibrio sp. VCB2001

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: eye (uveitis)

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Institute for Microbiology and Epizootics, Freie University Berlin


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environmental surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Bacillus pumilus


ncbi_organism_name: Bacillus thuringiensis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Fudan University


ncbi_country: Spain

ncbi_isolation_source: inside the caves of Drach

ncbi_organism_name: Martelella mediterranea DSM 17316


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_country: USA: MD

ncbi_organism_name: Shigella flexneri

ncbi_strain_identifiers: DMB SH20017

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Alistipes sp. DJF_B185

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: water

ncbi_organism_name: Microbacterium foliorum

ncbi_submitter: Shandong First Medical University


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with retrograde maize

ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_isolation_source: Fecal sample from botulism case

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Health Canada


ncbi_country: Ghana

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Luebeck


ncbi_submitter: the seqafrica consortium


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Candidatus Infernicultor aquiphilus

ncbi_taxonomy: d__Bacteria;p__Atribacterota;c__Candidatus Phoenicimicrobiia;o__Candidatus Pheonicimicrobiales;f__Candidatus Phoenicimicrobiaceae;g__Candidatus Infernicultor;s__Candidatus Infernicultor aquiphilus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;c__Candidatus Phoenicimicrobiia;o__Candidatus Pheonicimicrobiales;f__Candidatus Phoenicimicrobiaceae;g__Candidatus Infernicultor;s__Candidatus Infernicultor aquiphilus


ncbi_country: Denmark

ncbi_isolation_source: Turkey meat

ncbi_organism_name: Enterococcus faecalis EnGen0073

ncbi_submitter: Broad Institute


ncbi_country: USA: St. Louis

ncbi_isolation_source: Connective tissue

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Cornell University


ncbi_country: South Korea: Yongyu-do

ncbi_isolation_source: tidal flat

ncbi_organism_name: Flavobacteriaceae bacterium YJPT1-3

ncbi_submitter: Korea University


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0048


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Pseudomonas tremae

ncbi_submitter: University of Arizona


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: INSERM


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Atlantic Ocean: Sargasso Sea

ncbi_organism_name: Proteobacteria bacterium UBA5953

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA5953


ncbi_isolate: metabat2_coassembly_bwa.433 MAG

ncbi_organism_name: Clostridiales bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.433 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-b_bin-546

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_country: Poland: Warsaw

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_country: Thailand: Hat Yai City; Songkhla province

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Lubbock


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA

ncbi_organism_name: Neisseria meningitidis NM2657

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom: London

ncbi_isolation_source: patient with whooping cough in Japan.

ncbi_organism_name: Bordetella pertussis Tohama I

ncbi_strain_identifiers: Tohama I

ncbi_submitter: Serum Institute of India


ncbi_country: Russia: Sea of Japan

ncbi_isolation_source: deep surface-sediment sample

ncbi_organism_name: Devosia submarina

ncbi_submitter: Zhejiang Wanli University


ncbi_country: USA: TX

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: Butyrivibrio sp. XPD2006

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Ili; Xinjiang

ncbi_isolation_source: Yoghurt

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: shanghai jiao tong university


ncbi_country: Brazil: Cerrado; SP

ncbi_isolation_source: Brazilian Cerrado

ncbi_organism_name: Pseudonocardia sp. ICBG162

ncbi_submitter: University of Sao Paulo


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Brevibacillus porteri

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Fluviicola sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces smyrnaeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Desulfotignum sp.

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Salmonella sp. NW876

ncbi_submitter: Sichuan University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Fimisoma sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimisoma;x__unclassified Candidatus Fimisoma;s__Candidatus Fimisoma sp.


ncbi_isolate: isolate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Salmonella sp. SAL04178

ncbi_submitter: Zhejiang university


ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Instituto de Biotecnologia Ambiental y Salud (INBIAS-CONICET))

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Vulcanimicrobiota bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Canada: Vancouver

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Caldilineales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Blastomonas fulva

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Japan: Nakabusa Onsen; Nagano Prefecture

ncbi_isolation_source: sulfidic hot spring

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EBI


ncbi_assembly_name: freshwater MAG --- AM_bin-3362

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium