ncbi_country: Netherlands

ncbi_submitter: University of Groningen, University Medical Center Groningen


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: China: Hangzhou

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_organism_name: Anaeromassilibacillus senegalensis

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Luzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_country: Brazil: Sao Paulo; Conceicao

ncbi_organism_name: Erwinia psidii

ncbi_strain_identifiers: LPF 640

ncbi_submitter: Universidade de Brasilia


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Leuconostoc sp.

ncbi_submitter: NIH/NHGRI


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: rhizophere

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: Shandong Agricultural University


ncbi_organism_name: Bacillus sp. FSL P2-0099

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL P2-0099


ncbi_isolation_source: seed

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Instituto de Investigaciones Biologicas Clemente Estable


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 6508

ncbi_submitter: University of Exeter


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Actinomycetaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: University College Dublin


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Fujian Medical University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Jiangnan University


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: USA: NJ

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_assembly_name: freshwater MAG --- Loc090519-7m_bin-1544

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_country: USA: VA

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Dallas; Texas

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_assembly_level: Chromosome

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: KU Leuven


ncbi_country: China: Zhengzhou

ncbi_isolation_source: respiratory tract specimen

ncbi_submitter: Children's Hospital Affiliated to Zhengzhou University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG11273

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Burkholderia multivorans


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P4 CL A21

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Ruminococcus flavefaciens ND2009

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacterium sp. 14-2

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. 14-2


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Candidatus Albibeggiatoa psychrophila

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Napa Valley; California

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_strain_identifiers: Stag's Leap

ncbi_submitter: USDA-ARS


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_country: Canada: Calgary

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Australia: NSW

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_organism_name: Glaesserella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Prince of Songkla University


ncbi_assembly_name: Rumen uncultured genome RUG10255

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: Retail pork

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Taipei Medical University


ncbi_country: Russia: Moscow

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas plecoglossicida

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ GmbH


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: beetle eggs

ncbi_organism_name: Variovorax sp.

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Leuconostoc suionicum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Switzerland

ncbi_isolation_source: environmental swab veterinary clinic

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_organism_name: Novosphingobium indicum

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: EMG


ncbi_country: Germany: Schoenbuch

ncbi_isolation_source: blood sample

ncbi_organism_name: Bartonella schoenbuchensis R1

ncbi_submitter: University of Basel


ncbi_assembly_name: IMG-taxon 2724679814 annotated assembly

ncbi_organism_name: Flavobacterium hercynium

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Arthrobacter woluwensis NBRC 107840

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: High River

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium sp. ESL0745

ncbi_submitter: University of Lausanne


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_organism_name: Patescibacteria group bacterium UBA6028

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA6028


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_country: China

ncbi_organism_name: Pseudotamlana haliotis

ncbi_submitter: Insititute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: WHOY

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: WTSI


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pittsburgh


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-1487

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriia bacterium

ncbi_submitter: BILS


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Oscillospiraceae bacterium AF88-14pH9A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Lachnospiraceae bacterium TF10-8AT

ncbi_submitter: BGI


ncbi_organism_name: Coprobacillus sp. K06

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: ICAR-Indian Veterinary Research Institute


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Germany

ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Bartonella clarridgeiae ATCC 51734

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: coral

ncbi_organism_name: Ruegeria sp. R8_2

ncbi_submitter: University of Konstanz


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: USA: Iowa

ncbi_organism_name: Bordetella bronchiseptica F-1

ncbi_submitter: JCVI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: Isfahan University of Technology


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Sulfurovum sp. CS9

ncbi_submitter: Institute of oceanology, Chinese Academy of Sciences


ncbi_organism_name: Pseudorhodoplanes sp.


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Streptomyces sp. NPDC016640

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Minisyncoccales bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;s__Minisyncoccales bacterium


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Legionellales bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Center for Industrialization of Agricultural and Livestock Microorganisms


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Streptomyces collinus


ncbi_organism_name: Acetobacter papayae

ncbi_submitter: Teagasc


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. 310G5

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 310G5


ncbi_organism_name: Escherichia coli

ncbi_submitter: Goethe University Frankfurt


ncbi_isolate: SPRUCE 544

ncbi_organism_name: Ignavibacteria bacterium

ncbi_strain_identifiers: SPRUCE 544

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: spacecraft surface

ncbi_organism_name: Neobacillus niacini

ncbi_strain_identifiers: MER TA 87

ncbi_submitter: Jet Propulsion Laboratory


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: China: Tibet

ncbi_isolation_source: saline lake

ncbi_organism_name: Salegentibacter lacus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: India

ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_submitter: INRA


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22521;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: China: Wuhan

ncbi_isolation_source: river water

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: The First Affiliated Hospital of Medical School


ncbi_isolation_source: termite gut

ncbi_submitter: Tokyo Institute of Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South Dakota State University


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium sp. 1245801.1

ncbi_submitter: JCVI


ncbi_isolation_source: sediment

ncbi_organism_name: Phaeobacter italicus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Texas

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Kangiella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: rat gut

ncbi_organism_name: Clostridiales bacterium UBA7044

ncbi_submitter: University of Queensland


gtdb_type_species_of_genus: t

ncbi_country: Saudi Arabia: Thuwal

ncbi_isolation_source: Lab-scale microbial electrolysis cell

ncbi_organism_name: Trichloromonas acetexigens

ncbi_submitter: king Abdullah university of science and technology (KAUST)


ncbi_organism_name: Anoxybacillus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Japan:Japan Sea

ncbi_isolation_source: marine water

ncbi_organism_name: Alteromonas sp. I4

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_country: USA: Virginia

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: iowa state university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Guangzhou

ncbi_isolation_source: hospital patient with urinary tract infection

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Parasphingorhabdus sp.


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Washington University in St. Louis


ncbi_country: Germany: Goettingen

ncbi_isolation_source: tomato rhizosphere

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: China: Weihai

ncbi_isolation_source: deep sea

ncbi_organism_name: Kocuria rosea

ncbi_submitter: Harbin Institute of Technology


ncbi_country: French Guiana: Petit Saut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Klebsiella sp. SORGH_AS_1173

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: NY

ncbi_isolation_source: canine feces

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Changsha

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Xiangya hospital, Central South University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Chile: Los Lagos; Cahuelmo Hot Spring

ncbi_isolation_source: non-acidic hot spring microbial mat

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: chicken litter

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: the rhizosphere soil of tea tree

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Anhui Normal University


ncbi_isolation_source: denitrifying biofilm treating seawater

ncbi_organism_name: Hyphomicrobium nitrativorans NL23

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Desulfomicrobium sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Candidatus Binatus sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;x__unclassified Candidatus Binatus;s__Candidatus Binatus sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: ISVV


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium GW2011_GWA1_44_25


ncbi_organism_name: Petrotoga sp. 9T1HF07.CasAA.8.2

ncbi_submitter: University of Alberta


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Marine research


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Zhejiang Institute for Food and Drug Control


ncbi_assembly_name: IMG-taxon 2623620611 annotated assembly

ncbi_organism_name: Micromonospora chersina

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Brazil:Sao Paulo

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Guangxi; Longshenao


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Denmark

ncbi_isolation_source: skin

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: dairy product

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Kingston University London, United Kingdom


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_country: Israel: Jerusalem; The Tisch Family Biblical Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: The Hebrew University of Jerusalem


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Photobacterium sanguinicancri

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecalis EnGen0365

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2593339146 annotated assembly

ncbi_organism_name: Ruminococcus sp. YRD2003


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Paenibacillus sp. FSL R10-2736

ncbi_submitter: Penn State


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site C

ncbi_isolation_source: Beach sand

ncbi_organism_name: Anderseniella sp.

ncbi_submitter: Monash University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: Iran

ncbi_organism_name: Mycobacterium tuberculosis NRITLD14


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UK Health Security Agency


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_submitter: EPFL


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: INRA


ncbi_organism_name: Actinocorallia glomerata

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Streptomyces rubradiris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Roseivirga ehrenbergii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus italicus


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Oahu; Hawaii

ncbi_isolation_source: water

ncbi_organism_name: Luteimonas sp. JM171

ncbi_submitter: University of Hawaii at Manoa


ncbi_organism_name: Paracoccaceae bacterium


ncbi_country: China: Fujian

ncbi_isolation_source: Dead waterfowl

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. 2011EL-1675A


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Clostridioides sp. ZZV15-6383

ncbi_submitter: Northern Arizona University


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_isolation_source: osteomyelitis

ncbi_submitter: NYU Langone Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus str. Newman


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Seawater from Hwajinpo

ncbi_organism_name: Pseudoruegeria aquimaris

ncbi_strain_identifiers: CECT 7680

ncbi_submitter: UVEG


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Tunisia

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: ANSES


ncbi_organism_name: Candidatus Puniceispirillales bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__Candidatus Puniceispirillales bacterium


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Xiamen University


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Galbitalea soli

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: NNAb 2481

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_organism_name: Yersinia pseudotuberculosis


ncbi_organism_name: Francisella philomiragia


ncbi_organism_name: Streptomyces sp. NPDC006435

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_organism_name: uncultured Lichenihabitans sp.

ncbi_submitter: Spribille Lab


ncbi_assembly_name: Rumen uncultured genome RUG11330

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: SCOPE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belgium

ncbi_isolation_source: field experiment

ncbi_organism_name: Curtobacterium flaccumfaciens pv. betae

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_country: Italy

ncbi_isolation_source: food

ncbi_organism_name: Yersinia intermedia

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 1

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: Streptomyces sp. GSL17-113

ncbi_submitter: University of Utah


ncbi_country: USA: California

ncbi_isolation_source: aquarium

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of California, Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. DP16D-R1

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Spain: Asturias

ncbi_organism_name: Vreelandella subglaciescola

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: Poultry faeces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_organism_name: Hydrocurvibacter mobilis

ncbi_submitter: Third institute of oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Streptomyces canus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Dysosmobacter sp. HCP28S3_G4

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Thermus aquaticus

ncbi_submitter: Montana State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: uncultured Caldilineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: Shanxi Agricultural University


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: University of the Pacific


ncbi_organism_name: Holdemanella biformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Algiphilus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BiOSSE


ncbi_organism_name: Empedobacter stercoris

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Cadiz


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: University of Surrey


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_organism_name: Deinococcaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Kribbella sp. NPDC004875

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Central Florida


ncbi_organism_name: Flavobacterium sp. ZS1P14

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_strain_identifiers: 22f fall

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycoplasma capricolum subsp. capricolum

ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capricolum


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Bacillales bacterium UBA5026

ncbi_submitter: University of Queensland


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Lab of Microbial Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- MJ111018B_bin-0900

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Pseudarthrobacter oxydans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Rhizobacter sp. Root16D2

ncbi_submitter: Max Planck Institute for Plant Breeding Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp. Root16D2


ncbi_country: Japan

ncbi_organism_name: Streptobacillus moniliformis

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bilophila sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bangladesh: Natore

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Bangladesh Agricultural University


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: China: Anhui

ncbi_isolation_source: Diapulate

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oceanococcus sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Stanford University


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: Rumen uncultured genome RUG13202

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus F45759

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Cold smoked salmon dry salted

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_country: Australia: NSW

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Prevotella jejuni


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus epidermidis


ncbi_country: China: Dongguan City

ncbi_isolation_source: compost windrow

ncbi_organism_name: Desulforamulus ferrireducens

ncbi_submitter: Guangdong Institute of Eco-Environmental Science & Technology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Anaeroplasmataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_country: USA: Tucson; AZ

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_country: Sri Lanka

ncbi_isolation_source: neonatal anal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_submitter: Guangxi Institute of Fisheries


ncbi_country: France

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: iai - institu des agents infectieux


ncbi_country: China: Guangzhou

ncbi_isolation_source: WAQ

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital of Southern Theatre Command of PLA


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Methylophaga sp.

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_country: Germany

ncbi_isolation_source: insect intestine

ncbi_organism_name: Yokenella regensburgei ATCC 49455

ncbi_submitter: UW-GEL (University of Wisconsin - Genome Evolution Laboratory)


ncbi_organism_name: Rickettsia prowazekii str. BuV67-CWPP

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: fermented milk

ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Key Laboratory of Dairy Biotechnology and engineering


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: marine college, shandong university


ncbi_country: Mexico: Cancun

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WAC04189

ncbi_submitter: McMaster University


ncbi_organism_name: Micromonospora echinofusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Athalassotoga sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Liaocheng

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acetomicrobium sp.


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sapienza University of Rome


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_country: Canada: Alberta

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Peru

ncbi_isolation_source: kidney/liver

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Instituto Tecnologico de la Produccion


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: airways; upper respiratory tract

ncbi_organism_name: Streptococcus parasanguinis ATCC 903

ncbi_strain_identifiers: ATCC 903

ncbi_submitter: Baylor College of Medicine


ncbi_country: South Korea

ncbi_organism_name: Ornithinimicrobium avium

ncbi_submitter: Kyung Hee University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Fusobacterium sp. DD40

ncbi_submitter: University of Calgary


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chulabhorn Research Institute


ncbi_organism_name: Thermodesulfobacteriales bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Nocardiopsis tropica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Ecuador: Cuenca

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Micropruina sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0126

ncbi_submitter: Broad Institute


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Kunming

ncbi_isolation_source: feces

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Oregon State University


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bacteroides sp. NMBE5

ncbi_submitter: National Centre for Cell Science


ncbi_organism_name: Candidatus Buchananbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Buchananiibacteriota;x__unclassified Candidatus Buchananbacteria;s__Candidatus Buchananbacteria bacterium


ncbi_organism_name: Bacteroides cellulosilyticus


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_country: USA: DC

ncbi_isolation_source: Urine clean catch

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D10_bin-0295

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11301

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-152

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_strain_identifiers: CECT 4199

ncbi_submitter: UCONNMISEQ


ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: University Claude Bernard Lyon 1


ncbi_isolation_source: sheep gut metagenome


ncbi_isolation_source: Caecum


ncbi_organism_name: uncultured Anderseniella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AP

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_country: Brazil: Pelotas

ncbi_isolation_source: tracheal aspirate

ncbi_submitter: Universidade Federal de Pelotas


ncbi_country: Thailand: Narathiwat

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: USA: Maine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maine at Presque Isle


ncbi_isolation_source: pig gut metagenome


ncbi_country: Ecuador: Quito

ncbi_submitter: Universidad San Francisco de Quito


ncbi_country: Panama

ncbi_organism_name: Bradyrhizobium sp. Cp5.3

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 325

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SNUC 1323

ncbi_submitter: University of Calgary


ncbi_country: India: Chilika lake

ncbi_isolation_source: lake sediment

ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: KIIT University


ncbi_country: China: Jiangsu

ncbi_isolation_source: seawater from white shrimp (Litopenaeus vannamei) tank

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_assembly_name: Rumen uncultured genome RUG14032

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Blautia caecimuris

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: The University of Texas at Dallas


ncbi_country: Canada: Southern Alberta

ncbi_isolation_source: Water line; poultry barn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: JiangSu

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: China: Zhengzhou

ncbi_isolation_source: stool

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Klebsiella aerogenes

ncbi_strain_identifiers: AHR-KA 1

ncbi_submitter: Universidade Federal de Sao Carlos


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Southern California


ncbi_assembly_name: Rumen uncultured genome RUG414


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pseudothermotoga sp.

ncbi_submitter: marine college, shandong university


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: CA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA/CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_assembly_name: Burkholderia  cenocepacia BCC0687

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Poland

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_country: India: Vellore

ncbi_submitter: Christian Medical College


ncbi_country: China: South China Sea

ncbi_isolation_source: sea mud

ncbi_organism_name: Streptomyces sp. NA13

ncbi_submitter: Institute of Applied Ecology, Chinese Academy of Sciences


ncbi_isolation_source: lung tissue

ncbi_organism_name: Mycobacterium malmoense

ncbi_submitter: Uppsala University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_country: Italy

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Universita degli Studi di Firenze


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium CG2_30_43_15


ncbi_country: Ireland

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: Kimchi

ncbi_organism_name: Secundilactobacillus kimchicus JCM 15530

ncbi_submitter: Shanghai Majorbio


ncbi_organism_name: Streptomyces sp. NPDC088847

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: FL

ncbi_isolation_source: feces

ncbi_submitter: US Food and Drug Administration


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Helicobacter pylori SA224C

ncbi_submitter: MHH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jilin Agricultural University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Megasphaera sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Ectopseudomonas khazarica


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: IBCH RAN


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Phocaeicola plebeius


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Japan: Hakuba Happo Hot Spring

ncbi_isolation_source: hot spring

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: University of Hawaii Graf Lab


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Xiamen University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from upstream of wastewater treatment plant

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Halanaerobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Iowa State University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: Avena fatua rhizosphere soil middle density fraction time point 6 weeks

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_assembly_name: freshwater MAG --- AM4_bin-138

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental swab

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome


ncbi_country: Russia: Severnaya Zemlya; Krasnoyarsk region

ncbi_isolation_source: water

ncbi_organism_name: Gordonia amicalis

ncbi_strain_identifiers: IEGM 1400

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: China: Liangcheng

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter terrenus

ncbi_submitter: Inner Mongolia agricultural university, college of life science


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Portland State University


ncbi_assembly_name: J

ncbi_isolate: J

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: J

ncbi_submitter: DTU


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Jejunum

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: IMG-taxon 2619619006 annotated assembly

ncbi_organism_name: Alkalibacterium thalassium

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Quanzhou Normal University


ncbi_assembly_name: freshwater MAG --- AM-2014-D5_bin-327

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_assembly_name: WHOX

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: WTSI


ncbi_country: Venezuela: Auyan Tepui

ncbi_isolation_source: Mat on a water body surface in quartzite Imawari Yeuta cave

ncbi_organism_name: Paraburkholderia bryophila

ncbi_submitter: University of Bologna


ncbi_isolation_source: coral

ncbi_organism_name: Cyanobacteria bacterium UBA11691

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA11691


ncbi_country: Italy

ncbi_isolation_source: rice rhizosphere

ncbi_organism_name: Pseudomonas sp. 86_A

ncbi_submitter: International Centre for Genetic Engineering and Biotechnology (ICGEB)


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: SciBear LLC


ncbi_isolation_source: vegetables

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Salmonella Syst-OMICS


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: INRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Ja_bin-3167

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Nevskiaceae bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_51_10


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia seminalis

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Polaribacter atrinae

ncbi_submitter: marine college, shandong university


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Corynebacterium variabile

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Morocco: Rabat-Sale-Zemmour-Zaer; Khemisset Province

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shandong University


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Corynebacterium glyciniphilum AJ 3170

ncbi_submitter: BGI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_assembly_name: Salmonella enterica CVM N46855 v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Port Gibson; NY

ncbi_isolation_source: lung tissue

ncbi_organism_name: Mycoplasmopsis arginini

ncbi_submitter: National Research Council (CNR)


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_isolation_source: fresh feces

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_country: Australia: Carnarvon

ncbi_organism_name: Bradyrhizobium semiaridum

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_country: USA: Arizona

ncbi_organism_name: Brucella canis

ncbi_submitter: Viginia Tech University


ncbi_organism_name: Paenibacillus kribbensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: the hong kong university of science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Escherichia coli O157:H7 str. 08-3037

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 08-3037


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- MJ130820A_bin-253

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_submitter: Washington University in St. Louis


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_submitter: US EPA


ncbi_organism_name: Dakarella massiliensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: New York

ncbi_isolation_source: water

ncbi_organism_name: Janthinobacterium sp. BJB1

ncbi_submitter: GCAT-SEEK


ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Mexico

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: University of Georgia


ncbi_organism_name: Megasphaera sp.


ncbi_country: USA: WA

ncbi_isolation_source: glenoid tissue from a patient with failed shoulder athroplasty

ncbi_organism_name: Cutibacterium acnes P06A

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_organism_name: Legionellales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptomyces sp. NPDC029006

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolate: SPRUCE 92

ncbi_organism_name: Holophaga sp.

ncbi_strain_identifiers: SPRUCE 92

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacillus cereus group sp. BceL051

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL051


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: Aarhus University


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Palacky University Olomouc


ncbi_country: Hong Kong

ncbi_isolation_source: salmon sashimi

ncbi_organism_name: Vibrio parahaemolyticus VIP4-0219

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus VIP4-0219


ncbi_organism_name: uncultured Sulfitobacter sp.


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Hydrotalea sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Collinsella tanakaei

ncbi_submitter: Veterinary Research Institute


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad de Guadalajara


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Upper gallery; floor level; 50-70 cm from the wall

ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_organism_name: Chlamydia muridarum MopnTet14

ncbi_submitter: Oregon State University


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: Paediatrics

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolate: AOP1_B1_coeur _bin _6

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: AOP1_B1_coeur _bin _6

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Hyphomonas sp.


ncbi_country: China: Jiangsu

ncbi_isolation_source: Intestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Jersey

ncbi_submitter: University of Bath


ncbi_country: Argentina: Pergamino

ncbi_isolation_source: Wheat rhizospheric soil

ncbi_organism_name: Pseudomonas pergaminensis

ncbi_submitter: Universidad Nacional de Quilmes


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_country: Brazil

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Heidelberg

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei subsp. oharae

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. oharae


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Amazonas Hematology and Hemotherapy Hospital Foundation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: Packed chicken meat

ncbi_organism_name: Photobacterium carnosum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Monash University


ncbi_country: USA: Arizona

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Ibaraki; Tsukuba

ncbi_isolate: SMPLAKAE

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: SMPLAKAE

ncbi_submitter: John McCutcheon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: Canada: Manitoba

ncbi_isolation_source: Leg wound

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: feces

ncbi_submitter: Leiden University Medical Center


ncbi_organism_name: Ochrobactrum sp. BD22

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: Deciduous woodland; University campus

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2599185298 annotated assembly

ncbi_organism_name: Klenkia taihuensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_organism_name: Kangiella taiwanensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: International Flavors & Fragrances (IFF)


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Reyranella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: sputum

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Roseibium sp.

ncbi_submitter: University of Southern California


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient seawater

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG10152

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Fibrobacter succinogenes

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_country: Ireland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: BGI


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institue


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_isolate: Enterobacter xiangfangensis LMG 27195T

ncbi_strain_identifiers: Enterobacter xiangfangensis LMG 27195T

ncbi_submitter: JUSTUS LIEBIG UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis