ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_level: Scaffold

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


gtdb_representative: f

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: UIUC


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Escherichia coli

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Thalassoglobus sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured archaeon


ncbi_organism_name: uncultured Sphingomonadales bacterium


ncbi_organism_name: Trichococcus flocculiformis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: Caballeronia novacaledonica

ncbi_submitter: Guangdong Academy of Sciences


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: BiOSSE


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Leifsonia sp. NPDC058292

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Daesang


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Pseudolabrys sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: uncultured Nitrospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome RUG14149

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Zhejiang university


ncbi_submitter: University of Hyderabad


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UC San Diego


ncbi_organism_name: Loigolactobacillus coryniformis

ncbi_submitter: INRAE


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Candidatus Fibrimonadales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;c__Fibrobacteria;o__Candidatus Fibrimonadales;s__Candidatus Fibrimonadales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasopharyngeal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Oliverpabstia intestinalis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: University Hospital Duesseldorf


ncbi_assembly_name: IMG-taxon 2622736612 annotated assembly

ncbi_organism_name: Micromonospora tulbaghiae

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_country: Japan

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium paraintracellulare

ncbi_submitter: Niigata University School of Medicine


ncbi_country: Antarctica: McMurdo Dry Valleys

ncbi_isolation_source: sediment-laden stratified basal ice from Taylor Glacier

ncbi_organism_name: Paenisporosarcina sp. TG-14

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium urealyticum

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Germany: Hamburg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: China: Shandong

ncbi_isolation_source: water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Actinoplanes sp. NPDC048967

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Graduate School of Environmental and Life Sciences, Okayama University


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Zhejiang University


ncbi_country: Switzerland: Bern

ncbi_isolation_source: Forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Inselspital, Bern University Hospital


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: Finland

ncbi_isolation_source: Blood

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


ncbi_isolation_source: Human

ncbi_organism_name: Mycobacterium riyadhense

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: Saudi Arabia

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: MD

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: USA

ncbi_isolation_source: indoor dust from athletic facility

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Northwestern University


ncbi_organism_name: Streptomyces sp. BE133

ncbi_submitter: Washington University in St. Louis


ncbi_country: Israel

ncbi_isolation_source: milk from cow with acute mastitis

ncbi_organism_name: Escherichia coli VL2874

ncbi_submitter: Kimron Veterinary Institute


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Bacteroides nordii

ncbi_submitter: BGI


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Marinobacter sp. UBA7807

ncbi_submitter: University of Queensland


ncbi_isolation_source: Soil

ncbi_organism_name: Stenotrophomonas lactitubi

ncbi_submitter: University of Dundee


ncbi_country: Sweden

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Staphylococcus aureus VET0403R

ncbi_submitter: Broad Institute


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_assembly_name: freshwater MAG --- Umea_bin-03682

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_country: China:Guangdong; Zhaoqing

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: SouthChina Agriculture University


ncbi_country: USA: Tift Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Czech Republic

ncbi_isolation_source: Digestive tract

ncbi_organism_name: Pseudoscardovia radai

ncbi_submitter: University of Parma


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_strain_identifiers: ICMP 8731

ncbi_submitter: Agriculture Victoria


ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Thauera sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_assembly_name: IMG-taxon 2593339244 annotated assembly

ncbi_organism_name: Pseudobutyrivibrio sp. YE44

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Guangdong

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_assembly_name: Bacillus niameyensis

ncbi_organism_name: Bacillus niameyensis

ncbi_submitter: URMITE


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0091


ncbi_organism_name: Streptococcus pyogenes JRS4

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Salimicrobium sp. PL1-032A

ncbi_submitter: Murdoch University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Washington

ncbi_isolation_source: enrichment culture inoculated with soil

ncbi_organism_name: Pseudomonas sp. Sample_21

ncbi_submitter: Washington State University


ncbi_assembly_name: IMG-taxon 2606217733 annotated assembly

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: China: Sichuan

ncbi_isolation_source: pit mud of Chinese baijiu

ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: Sichuan University of Science and Engineering


ncbi_organism_name: Microbacterium phosphatis

ncbi_submitter: Henan Engineering Research Center of Industrial Enzymes


ncbi_country: Tunisia

ncbi_isolation_source: urine

ncbi_organism_name: Cedecea davisae

ncbi_submitter: Faculty of Sciences of Tunisia, ElManar, Laboratory of LMBA


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Ardenticatenaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Ghana

ncbi_organism_name: Pseudomonas pudica

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Canada: Metcalfe Bay; British Columbia

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: Roseburg

ncbi_isolation_source: itra-abdominal tract infection

ncbi_submitter: AstraZeneca


ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Alberta

ncbi_isolation_source: ANIMAL-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20111514


ncbi_country: Sweden

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of Queensland


gtdb_type_species_of_genus: t

ncbi_organism_name: Hominifimenecus microfluidus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Austria: Forstenau

ncbi_isolation_source: Mine waters

ncbi_organism_name: Acidithiobacillus ferrooxidans F221

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sobrinus TCI-50

ncbi_submitter: JCVI


ncbi_country: China: Minhang

ncbi_isolation_source: dirt

ncbi_organism_name: Rothia amarae

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Canada: Ontario

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120927


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Tunisia

ncbi_isolation_source: thermal spring

ncbi_organism_name: Microaerobacter geothermalis

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Massilia soli

ncbi_submitter: CHUNG-ANG UNIVERSITY


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Marinococcus halophilus

ncbi_submitter: URMITE


ncbi_country: India

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Emory University School of Medicine


ncbi_country: China

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Ocean University of China


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: University of Waterloo


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nagoya University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Italy

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Klebsiella sp. 122498

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_assembly_name: CLC assembled contigs

ncbi_country: Saudi Arabia

ncbi_isolation_source: sea water

ncbi_organism_name: Candidatus Pelagibacter communis

ncbi_strain_identifiers: SCGC AAA795-O20

ncbi_submitter: UNIVERSITY OF CALIFORNIA - SAN DIEGO

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;s__Candidatus Pelagibacter communis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;s__Candidatus Pelagibacter communis


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0839

ncbi_submitter: Broad Institute


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: obscured

ncbi_organism_name: Bordetella ansorpii


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Candidatus Tisiphia;x__unclassified Candidatus Tisiphia;s__Candidatus Tisiphia endosymbiont of Sialis lutaria


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: South Korea: Jeju

ncbi_isolation_source: marine sponge

ncbi_organism_name: Aureivirga sp. CE67

ncbi_submitter: Jeju National University


ncbi_country: Russia: Moscow

ncbi_submitter: SRCAMB


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: South Korea: Sancheong

ncbi_isolate: kimchi

ncbi_isolation_source: napa cabbage kimchi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Hyun Su Kim


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Leucobacter sp.

ncbi_submitter: University of Western Australia


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Patriot Biotech Sdn Bhd


ncbi_country: China: Fugong; Longhai; Zhangzhou; Fujian

ncbi_isolation_source: estuarine mud [ENVO:00002160]

ncbi_organism_name: Salipiger pentaromativorans

ncbi_submitter: Institute of Urban Environment,CAS


ncbi_country: New Zealand: Palmerston North

ncbi_organism_name: Faecalibacterium sp. IP-1-18

ncbi_submitter: AgResearch


ncbi_country: Germany

ncbi_isolation_source: Phyllosphere

ncbi_organism_name: Microbacterium foliorum

ncbi_submitter: Austrian Institute of Technology


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_organism_name: Algibacter miyuki

ncbi_strain_identifiers: CECT 8300

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: USA

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Celerinatantimonas diazotrophica

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Broad Institute


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: muskrat during outbreak

ncbi_organism_name: Chlamydia psittaci M56

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia psittaci;x__Chlamydia psittaci M56


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Nanjing City; Jiangsu Province

ncbi_isolation_source: activated sludge

ncbi_organism_name: Nitratidesulfovibrio sp. SRB-5

ncbi_submitter: Cupidesulfovibrio sp. SRB-5


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: California

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 63

ncbi_submitter: USDA-ARS


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Comamonas testosteroni

ncbi_submitter: University of Technology Sydney


ncbi_assembly_name: freshwater MAG --- AM-2014-D1_bin-139

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bartonella sp. AC62GZZY

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Austria

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: India: Izzatnagar town; Bareilly district; Uttar Pradesh

ncbi_isolation_source: Milk

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Brazil: Dourados

ncbi_submitter: LNCC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Psychrobacter faecalis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhodoferax sp.


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Paenarthrobacter sp. NEAU-H11

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Bacillus cereus


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paenibacillus sp. 2KB_20

ncbi_submitter: CCRP


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Yersinia pestis

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_organism_name: uncultured Marinilabiliaceae bacterium


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Russia: Byelii Yar; Tomsk region (Western Siberia)

ncbi_isolation_source: 2-km deep subsurface thermal aquifer

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-03303

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lomonosov Moscow State University, Faculty of Biology


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater from Yellow Sea

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Normandie Univ, UNICAEN, CHU de Caen Normandie


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: freshwater MAG --- MJ120716A_bin-0555


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Canada: British Columbia; Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: McGill University and Genome Quebec Innovation Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: assembly 1

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: LISBP


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Megasphaera sp.


ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Pyruvatibacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: United Kingdom: Scotland; Edinburgh; Botanical gardens

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_00198

ncbi_submitter: Technical University of Denmark


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Photorhabdus laumondii subsp. laumondii

ncbi_submitter: University of Bern


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: [Eubacterium] siraeum


ncbi_isolation_source: feces


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_country: Singapore

ncbi_isolation_source: urine

ncbi_submitter: National University of Singapore


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Nigeria: Igboukwu

ncbi_isolation_source: sold in market

ncbi_organism_name: Citrobacter portucalensis

ncbi_strain_identifiers: Igbk 13

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Prof. Bart Currie, Menzies School of Health Research


ncbi_country: Canada

ncbi_isolation_source: sputum

ncbi_organism_name: Pandoraea pulmonicola

ncbi_submitter: University of Malaya


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Phaeodactylibacter sp.

ncbi_submitter: The University Hong Kong


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab arm

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_country: Germany: Giessen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Frankfurt


ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_country: Mali

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Agromyces terreus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Changsha

ncbi_isolation_source: liver abscess

ncbi_submitter: Beijing genomics institute


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Uganda: Bombo Military Hospital

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Germany

ncbi_organism_name: Thermocrispum municipale DSM 44069

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: Marinobacter nauticus VT8

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_submitter: North South university


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Ukraine: eastern Crimea

ncbi_isolation_source: bubbling pool in the central crater-like structure of an active mud volcano

ncbi_organism_name: Halomonas sp.

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: China

ncbi_isolation_source: soils

ncbi_organism_name: Bacillus sp. L75

ncbi_submitter: NanJing Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. L75


ncbi_organism_name: Treponema phagedenis

ncbi_submitter: Washington State University


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: uncultured Anaerobiospirillum sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Aeromonas sp. ASNIH5

ncbi_submitter: NIH


ncbi_country: China: Dalian

ncbi_isolation_source: Northern Yellow Sea

ncbi_organism_name: Pseudoalteromonas sp. GCY

ncbi_strain_identifiers: GCY

ncbi_submitter: Dalian University of Technology


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Kamchatka; Mutnovsky

ncbi_isolation_source: thermophilic sediment from acid hot spring

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_country: Mexico

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Vibrio sp. V14_P6S14T42

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: cold seep

ncbi_organism_name: Granulosicoccaceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Kenya

ncbi_isolation_source: banana bacterial wilt from infected banana pseudostem

ncbi_strain_identifiers: Kenyan

ncbi_submitter: International Institute of Tropical Agriculture

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas vasicola;x__Xanthomonas vasicola pv. musacearum;x__Xanthomonas vasicola pv. musacearum 'Kenyan'


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Streptococcus hohhotensis

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: fecal swab

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_country: Russia: Udmurt Republic

ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Dickeya dadantii NCPPB 3537

ncbi_strain_identifiers: NCPPB 3537

ncbi_submitter: James Hutton Institute


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Klebsiella sp. 118026

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0299438.6

ncbi_submitter: IGS


ncbi_country: Saudi Arabia

ncbi_isolation_source: desert sand

ncbi_organism_name: Siccirubricoccus deserti

ncbi_strain_identifiers: SYSU D8009

ncbi_submitter: china agricultural university


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Helicobacteraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Avelusimicrobium fimicolum

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Toho University


ncbi_isolate: labscale reactor_MAG10

ncbi_organism_name: Rhabdaerophilum sp.

ncbi_strain_identifiers: labscale reactor_MAG10

ncbi_submitter: European Union Horizon 2020 research and innovation programme


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Mesorhizobium sp. M1005

ncbi_submitter: Washington State University


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_country: Japan

ncbi_isolation_source: dental biofilm

ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom: Great Britain

ncbi_isolation_source: nose

ncbi_organism_name: Metamycoplasma equirhinis

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: flower of orchid

ncbi_organism_name: Asaia bogorensis NBRC 16594

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Kordiimonas sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Pharygitis

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2762100

ncbi_submitter: IGS


ncbi_country: France

ncbi_isolation_source: pork product

ncbi_submitter: French Agency for Food, Environmental and Occupational Health & Safety

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Quanzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: The First Affiliated Hospital of Medical College, Zhejiang University


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: USA

ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Spain

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: USA: CA

ncbi_isolation_source: Raw Cream

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Trueperella bialowiezensis

ncbi_submitter: SC


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg;x__Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Helicobacter sp. UBA3407


ncbi_organism_name: Streptococcus pneumoniae SP9-BS68

ncbi_submitter: Center for Genomic Sciences, Allegheny-Singer Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_assembly_name: IMG-taxon 2619618823 annotated assembly

ncbi_organism_name: Trichococcus pasteurii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of New South Wales


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: Antarctica

ncbi_isolation_source: marine sediment

ncbi_organism_name: Pseudomonas sp. TAA207

ncbi_submitter: University of Florence


ncbi_country: Virgin Islands: St. Thomas; Hull Bay

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pseudoalteromonas sp. Ps84H-4

ncbi_submitter: Meyer Microbes Lab


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0171

ncbi_strain_identifiers: VAN 219

ncbi_submitter: Broad Institute


ncbi_country: Australia: Brisbane

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Variovorax sp. V77

ncbi_submitter: Kyoto University


ncbi_isolation_source: sand filter of a drinking water treatment system

ncbi_organism_name: Chloracidobacterium sp. UBA7659

ncbi_submitter: University of Queensland


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Saudi Arabia: central Red Sea

ncbi_isolation_source: Surface water sample from the central Red Sea

ncbi_organism_name: Prochlorococcus sp. RSP50

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_country: India: Hyderabad

ncbi_isolation_source: Large intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. HS-18

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Spain: Asturias

ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Switzerland

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Bern


ncbi_country: Finland

ncbi_isolation_source: faeces

ncbi_organism_name: Yersinia frederiksenii


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella sp. 131511

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_isolation_source: wastewater

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: Belgium: Leuven

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: KU Leuven


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Japan

ncbi_isolation_source: Infant feces

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Korea University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ruijin Hospital


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus agalactiae BSU260

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_strain_identifiers: acrnv

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Acinetobacter sp. ULE_I010

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_assembly_name: Salmonella enterica CVM N40375-R v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Reading


ncbi_country: China: Hainan

ncbi_isolation_source: Blood;Aneurysm tissue

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: BGI


ncbi_country: USA: MN

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Paenarthrobacter nicotinovorans

ncbi_strain_identifiers: nic-

ncbi_submitter: Alexandru Ioan Cuza University of Iasi


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Queensland


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ottowia sp.

ncbi_submitter: Hospital Sirio-Libanes


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_organism_name: Tenacibaculum ascidiaceicola

ncbi_submitter: Huaqiao University


ncbi_organism_name: Algoriphagus aquaeductus

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Salmonella sp. SWZD-2022002SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Exeter


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ANLIS "Dr. Carlos G. Malbran"


ncbi_organism_name: Streptomyces sp. KLOTTS4A1

ncbi_submitter: Eminent College of Pharmaceutical Technology


ncbi_organism_name: Leyella stercorea

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Streptomyces diastaticus


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Milan


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Cellulosimicrobium funkei

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Loc090519-4m_bin-050

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Salmonella sp. 741265134_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Agrobacterium rosae

ncbi_submitter: University of British Columbia


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 11S00605

ncbi_submitter: Broad Institute


ncbi_isolate: SPRUCE 224

ncbi_organism_name: Candidatus Binatus sp.

ncbi_strain_identifiers: SPRUCE 224

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;x__unclassified Candidatus Binatus;s__Candidatus Binatus sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United Kingdom Health Security Agency


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Majuli River Island; Assam

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: The University of Burdwan


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Brazil

ncbi_isolation_source: Food

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Beef carpaccio

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: INRA


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bacteriovorax stolpii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Vibrio panuliri

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: University of Queensland


ncbi_country: Oman

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Sultan Qaboos University


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Sichuan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Prevotella sp. UBA4330


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-0164

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Enterococcus faecalis EnGen0111

ncbi_submitter: Broad Institute


ncbi_organism_name: Priestia megaterium WSH-002

ncbi_submitter: Jiangnan University, State Key Laboratory of Food Science and Technology; Tianjin Biochip Corperation


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Erythrobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D5_bin-0093

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_strain_identifiers: MER 73

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Gemella sanguinis

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_assembly_name: V. cholerae BRV8

ncbi_country: United Kingdom

ncbi_isolate: V. cholerae BRV8

ncbi_isolation_source: Blood culture

ncbi_organism_name: Vibrio cholerae

ncbi_strain_identifiers: V. cholerae BRV8

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Chest

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: Patient 1 Isolate 1

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: UCL


ncbi_organism_name: Clostridium butyricum 5521

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Spain

ncbi_isolation_source: Medical

ncbi_submitter: Instituto de Investigacion Sanitaria y Biomedica de Alicante


ncbi_organism_name: Limosilactobacillus caviae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Nigeria

ncbi_isolation_source: backyard farm #12; cloacal swab # 23

ncbi_submitter: Auburn University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: Fudan University


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: South China Agricultural University


ncbi_country: China: Shaanxi

ncbi_isolation_source: chicken cloacal swab


ncbi_country: USA: Alabama

ncbi_isolation_source: plaque

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_submitter: AAFC


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 40cm depth; 4 days after first rain event (27mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokubacteria bacterium 13_1_40CM_2_70_45


ncbi_country: China: Xinjiang; Akesu

ncbi_isolation_source: desert soil

ncbi_organism_name: Pontibacter akesuensis

ncbi_strain_identifiers: AKS 1T

ncbi_submitter: Hubei provincial center for disease control and prevention


ncbi_country: Belgium

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: PREPARE (Platform foR European Preparedness Against (Re-)Emerging Epidemics, EU-FP7, # 602525


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Trichocoleus sp. FACHB-90

ncbi_submitter: South China Normal University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangxi

ncbi_isolation_source: semen

ncbi_organism_name: Pseudomonas sp. GXZC

ncbi_strain_identifiers: GXZC

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Nitrospiraceae bacterium UBA2194

ncbi_submitter: University of Queensland


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa X13273

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Streptomyces achromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces albidoflavus


ncbi_organism_name: Pseudoalteromonas sp. N1230-9

ncbi_submitter: Zhejiang Wanli University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Segatella copri

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerosalibacter bizertensis

ncbi_submitter: University of Chicago


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Cytobacillus stercorigallinarum

ncbi_submitter: Quadram Institutte


ncbi_country: Australia: Melbourne

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: ECO 093

ncbi_submitter: Monash University


ncbi_organism_name: Bordetella pertussis STO1-CHOC-0008

ncbi_submitter: JCVI


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Treponema sp. OMZ 906

ncbi_strain_identifiers: OMZ 906

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: British Columbia;Vancouver

ncbi_isolation_source: stool

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: Water column of Rimov Reservoir; Czechia

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: Biology Centre CAS, Institute of Hydrobiology


ncbi_organism_name: Humisphaera sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D8_bin-1392

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: salted anchovy

ncbi_submitter: Chung-Ang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Tetragenococcus;s__Tetragenococcus halophilus;sb__Tetragenococcus halophilus subsp. halophilus;x__Tetragenococcus halophilus subsp. halophilus DSM 20339


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Selenomonas sp.

ncbi_submitter: AAFC


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-PB1

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_assembly_name: Polaromonas sp strain CG9_12

ncbi_organism_name: Polaromonas sp. CG9_12

ncbi_submitter: NATIONALCENTERFORGENOMERESOURCES


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: ANSES


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Slackia piriformis

ncbi_submitter: University of California, Berkeley


ncbi_country: Russia: Krasnodar Krai; Gladkovsky mud volcano

ncbi_isolation_source: pool on the surface of a mud volcano

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Micromonospora vinacea

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine


ncbi_country: Taiwan:Taoyuan city

ncbi_isolation_source: blood specimen

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Chang Gung University


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: rice field

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: China National Rice Research Institute


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: Department of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Singapore

ncbi_isolation_source: Milk

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: NTU - Nanyang Technological University


ncbi_organism_name: Streptomyces sp. NPDC086519

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Viet Nam

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: Human

ncbi_organism_name: Mycobacterium riyadhense

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Aedoeadaptatus acetigenes

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Desulfonatronovibrio sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: sea water

ncbi_organism_name: Vibrio thalassae

ncbi_submitter: UVEG


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_name: freshwater MAG --- LJ-3-9m_bin-009

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Oscillochloris sp.

ncbi_submitter: BILS


ncbi_country: USA:California Monterey

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Old Alexandria Reservoir

ncbi_isolation_source: surface water collection during the winter

ncbi_organism_name: Flavobacterium sp. NKUCC04_CG

ncbi_submitter: Northern Kentucky University


ncbi_country: Australia

ncbi_submitter: The ithree institute


ncbi_country: Austria

ncbi_submitter: Medical University of Vienna


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;x__unclassified Candidatus Polarisedimenticolia;s__Candidatus Polarisedimenticolia bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Vibrio nigripulchritudo POn4

ncbi_submitter: Genoscope CEA


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Methylomonas koyamae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_country: South Korea: Bigeum

ncbi_isolation_source: Microbial mat

ncbi_organism_name: Marivirga salinarum

ncbi_submitter: Korea research institute of Bioscience and Biotechnology


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Princeton University


ncbi_country: Taiwan

ncbi_organism_name: Escherichia coli

ncbi_submitter: national health research institutes


ncbi_organism_name: Devosia marina

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Primary Effluent)

ncbi_organism_name: Enterococcus faecium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Papua New Guinea

ncbi_isolation_source: shallow tropical waters

ncbi_organism_name: Moorena bouillonii PNG

ncbi_submitter: UCSD


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Nigeria

ncbi_isolation_source: environmental

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Igbinedion University Okada Edo state Nigeria


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Switzerland: Bern

ncbi_isolation_source: Driveline

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Inselspital, Bern University Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Saprospirales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EBI


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom

ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21342


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alphaproteobacteria bacterium UBA5046

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia marmotae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: USDA-ARS


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC001480

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Streptantibioticus sp.


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Stenotrophomonas forensis

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Solibacteraceae bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alloalcanivorax xenomutans

ncbi_submitter: Hainan University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Arcobacter sp. YIC-464

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-0320

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: France: Rabion; Noyant

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas sp. 1239

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_organism_name: Methylobacterium sp. BE186

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruthenibacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Natronospirales bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudomonas coronafaciens pv. oryzae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. oryzae


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Vibrio cholerae HC-38A1

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: K189A clade bacterium

ncbi_submitter: Institute of Microbiology and Genetics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__K189A clade;s__K189A clade bacterium


ncbi_organism_name: Noviherbaspirillum massiliense

ncbi_submitter: EMG


ncbi_organism_name: Tissierellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Japan

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Dehalococcoidia bacterium UBA2160

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG11569

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Longimicrobiales bacterium


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Bangladesh: City of Brahmanbaria

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California Davis


ncbi_country: Canada: Sainte-Anne de Bellevue

ncbi_isolation_source: dialysis fluid

ncbi_organism_name: Allofranklinella schreckenbergeri

ncbi_submitter: National Microbiology Laboratory/ Public Health Agency of Canada


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: Chongqing

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Finland: Helsinki

ncbi_isolation_source: fecal sample from infant botulism case

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Helsinki


ncbi_country: USA: Shark River Island; NJ

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_country: Greece

ncbi_isolation_source: biological sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, University of Thessaly


ncbi_organism_name: Bacteroides heparinolyticus


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 160

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France

ncbi_submitter: IRHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. phaseoli var. fuscans


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: eye

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: TAILORED-Treatment project