ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of California, Berkeley


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: New Zealand

ncbi_genome_representation: full

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Mesorhizobium loti R88b

ncbi_submitter: JGI


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_assembly_name: Rumen uncultured genome RUG12905

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


gtdb_representative: t

ncbi_organism_name: Lutispora sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: Alloiococcus otitis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Spain: Madrid

ncbi_isolation_source: Lower respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: Cleveland

ncbi_isolation_source: cystic fibrosis isolate

ncbi_submitter: AstraZeneca


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae JCM 20051


ncbi_country: China: Shandong

ncbi_isolation_source: anal swabs from commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_country: Thailand: Nonthaburi province

ncbi_isolation_source: fermented fish

ncbi_organism_name: Gracilibacillus thailandensis

ncbi_submitter: Sichuan University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Streptomyces sp. NPDC059593

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universidad de los Andes


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Paenibacillus xylanilyticus

ncbi_submitter: Ministry of Natural Resources


ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Thiotrichales bacterium


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_submitter: Sun Yat sen University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Army Medical University


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_level: Chromosome

ncbi_organism_name: Parerythrobacter aurantius

ncbi_refseq_category: reference genome

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Streptomyces althioticus

ncbi_submitter: BGI Research


ncbi_organism_name: Akkermansia muciniphila


ncbi_submitter: Instituto Nacional de Rehabilitacion Luis Guillermo Ibarra Ibarra


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Treponema sp.


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: National University of Singapore


ncbi_organism_name: Candidatus Pelagibacter sp. HIMB1483

ncbi_submitter: Hawaii Institute of Marine Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. HIMB1483


ncbi_organism_name: Pseudomonas sp. GCM10023245

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Herbinix sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D4_bin-0190

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: White Oak River estuary; North Carolina; USA

ncbi_isolation_source: estuarine anaerobic sediment

ncbi_submitter: Stanford University


ncbi_country: Somalia

ncbi_isolation_source: fermented goat milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Brigham Young University


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Weeksellaceae bacterium


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Streptomyces sp. NPDC087297

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Prevotella bivia

ncbi_submitter: MIT


ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Aureimonas altamirensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Stony Brook University


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. FJAT-26390

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-26390


ncbi_country: China: Yunan

ncbi_strain_identifiers: BGSC 4AM1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar yunnanensis


ncbi_isolation_source: Soil

ncbi_organism_name: Paenibacillus glucanolyticus

ncbi_submitter: North Carolina State University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: bronchial fluid

ncbi_organism_name: Mycobacterium tuberculosis TRS14

ncbi_submitter: Vanderbilt University


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: University of Queensland


ncbi_country: USA: Arizona

ncbi_isolation_source: Gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Dialister invisus

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA: Columbus; Ohio

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; dental plaque

ncbi_organism_name: Tannerella sp. oral taxon 808

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella;x__unclassified Tannerella;s__Tannerella sp. oral taxon 808


ncbi_country: China

ncbi_strain_identifiers: BGSC 4Z1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar ostriniae


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Australia: Brisbane

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: The University of Queensland


ncbi_organism_name: Erysipelotrichaceae bacterium I46

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthomonas citri pv. malvacearum

ncbi_strain_identifiers: Xcm TX4

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. malvacearum


ncbi_organism_name: Bacillus cereus LCT-BC244

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus LCT-BC244


ncbi_organism_name: Leptobacterium meishanense

ncbi_submitter: Ningbo University


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Japan

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: USA:California San Luis Obispo

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Prince of Songkla University


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: University of Utah


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Versatilivorator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Versatilivoradales;f__Candidatus Versatilivoraceae;g__Candidatus Versatilivorator;x__unclassified Candidatus Versatilivorator;s__Candidatus Versatilivorator sp.


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Shell Egg

ncbi_submitter: Pennsylvania State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Department of Microbiology and Infectious disease, School of Medicine, Toho University


ncbi_organism_name: Diaphorobacter nitroreducens


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T37849

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Mahidol University


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_submitter: University of Alberta


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: EMG


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Staphylococcus aureus M81490


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: Zoo Composter number 3

ncbi_submitter: Instituto de Quimica


ncbi_country: China: Shenzhen

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: BGI


ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 933

ncbi_submitter: USDA-ARS


ncbi_isolation_source: Bombus terrestris

ncbi_organism_name: Snodgrassella communis

ncbi_submitter: Sciensano


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Turkey: Lake Acigol

ncbi_isolation_source: sediment sample

ncbi_organism_name: Virgibacillus sp. AGTR

ncbi_strain_identifiers: AGTR

ncbi_submitter: Istanbul Technical University


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EBI


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Streptomyces sp. DSM 41269

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Sinorhizobium sp. CB9

ncbi_submitter: University of Namibia


ncbi_isolation_source: lake water

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: EMG


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: CHUV-UNIL


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter sp. 809848

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 809848


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Florida; Big Torch Key

ncbi_organism_name: Micromonospora sp. WMMD961

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Broiler parent54

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: feces

ncbi_submitter: Sichuan University


ncbi_country: Australia: Great Barrier Reef; Davies Reef

ncbi_isolation_source: heavily fouled and necrotic sponge specimen

ncbi_organism_name: Pseudoalteromonas agarivorans

ncbi_submitter: School of Environmental Studies, Jadavpur University, Kolkata 700032, India


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei


ncbi_country: China

ncbi_isolation_source: gut microbiota

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: South Korea

ncbi_isolation_source: Pork

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Kyung Hee University


ncbi_assembly_name: SOAPdenovo v1.06

ncbi_isolation_source: hypersaline soil

ncbi_organism_name: Nocardiopsis chromatogenes YIM 90109

ncbi_submitter: Yunnan Institute of Microbiology, Yunnan University


ncbi_assembly_name: Rumen uncultured genome RUG12273

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_submitter: Ministry of Health


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Thiothrix sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Australia

ncbi_organism_name: Klebsiella africana

ncbi_submitter: Monash University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120469


ncbi_organism_name: Citrobacter sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Comamonas sp. lk

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Pseudomonas sp. EA_65y_Pfl2_P74

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Tecnologico Nacional de Mexico/IT de Ursulo Galvan


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R39(2017)

ncbi_submitter: University of Sao Paulo


ncbi_country: USA

ncbi_isolation_source: bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Pseudomonas sp. GD03722

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Wuhan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Nocardioides sp. NPDC127514

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Czech Republic: Petrovice

ncbi_isolation_source: mud of a creek bank

ncbi_organism_name: Acinetobacter sp. ANC 4173

ncbi_submitter: National Institute of Public Health


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: human skin

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: NIH/NHGRI


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Candidatus Aquidulcis sp.

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;g__Candidatus Aquidulcis;x__unclassified Candidatus Aquidulcis;s__Candidatus Aquidulcis sp.


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Lausanne


ncbi_country: Italy: Lecco

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Costa Rica

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Egypt: Cairo

ncbi_organism_name: Staphylococcus sp. EG-SA-27

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient17 sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People Hospital


ncbi_organism_name: Streptomyces microflavus


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Chicken Breast

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 39

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Italy

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 56824-5

ncbi_submitter: Broad Institute


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium ADurb.Bin326


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: Yangzhou university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Paris Saclay University


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Finland

ncbi_isolation_source: Beer

ncbi_organism_name: Pectinatus frisingensis

ncbi_submitter: Genedata


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France: Normandie

ncbi_isolation_source: Apple juice in fermentation (cider)

ncbi_organism_name: Oenococcus sp. UCMA 14587

ncbi_submitter: Universite de Caen Normandie

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Oenococcus;x__unclassified Oenococcus;s__Oenococcus sp. UCMA 14587


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Guizhou

ncbi_isolation_source: blood

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: BGI


ncbi_country: China: Hangzhou

ncbi_isolation_source: manure

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: zhejiang university


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Methylophagaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Arsenophonus sp.

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Fluviicola sp.

ncbi_submitter: BiOSSE


ncbi_organism_name: Oceanobacillus kapialis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Telluria sp. Tellsp99

ncbi_submitter: North Carolina State University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gemmiger formicilis


ncbi_submitter: chu de bordeaux


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: naresuan university


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Chonnam National University


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Alistipes putredinis


ncbi_submitter: University of Vienna


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Nocardia jejuensis NBRC 103114

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_name: freshwater MAG --- Ki3-D2_bin-0883

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Eubacteriales bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: Respiratory

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oxford


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: Max Planck Institute for Biology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Germany

ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Duncaniella muris


ncbi_country: China: Anhui

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: Spain

ncbi_isolation_source: clam larvae aquaculture

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_submitter: Instituto Nacional de Salud


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cpo073

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China

ncbi_submitter: Yangzhou university


ncbi_country: China: Hangzhou; Zhejiang Province

ncbi_organism_name: Arthrobacter sp. STN4

ncbi_submitter: Research Institute of Forestry, Chinese Academy of Forestry


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_submitter: Stony Brook University


ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Thalassospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Orenburg

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: ICIS 96

ncbi_submitter: Institute of cellular and intracellular symbiosis UrD RAS


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3799

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3799


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 959073

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Prevotella bivia

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Washington University in St Louis


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 36 (4-5675286)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 36 (4-5675286)


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;s__Candidatus Adlerbacteria bacterium GW2011_GWA1_54_10


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFOXYB12_FULL_58_10


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Oceanithermus sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Ruminococcus sp. AF37-20

ncbi_submitter: BGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0302308.3

ncbi_submitter: IGS


ncbi_country: Japan: Tokyo; Yamate-Dori

ncbi_isolation_source: soil sample

ncbi_organism_name: [Empedobacter] haloabium

ncbi_submitter: University of Tuebingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Oxalobacteraceae;x__Telluria group;x__Telluria group incertae sedis;s__[Empedobacter] haloabium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: feces


ncbi_organism_name: Staphylococcus kloosii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Victivallales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: EMG


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA7796

ncbi_submitter: University of Queensland


ncbi_country: Peru: Lima

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: USA

ncbi_organism_name: Chryseobacterium sp. KBW03

ncbi_submitter: Tufts University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Spain: Santander

ncbi_isolation_source: periprosthetic tissue specimen

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Veillonella sp.


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Segatella maculosa


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA: Hawaii

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: MIT


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Galway


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-04581

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Warrensburg; MO

ncbi_isolation_source: conjunctivitis

ncbi_submitter: Harvard Medical School / Massachusetts Eye and Ear Infirmary


ncbi_country: Poland

ncbi_isolation_source: radish sprouts

ncbi_organism_name: Cronobacter condimenti

ncbi_submitter: IBB PAS


ncbi_country: Serbia: Ada

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: China: Guangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium 4484_219


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: EMG


ncbi_organism_name: Mitsuokella multacida

ncbi_submitter: UIUC


ncbi_country: Spain: Valladolid

ncbi_isolation_source: rectal smear surveillance

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: RESCOL


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Florida; Tampa

ncbi_isolation_source: Patient stools

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of South Florida


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Brevibacterium sp. 91QC2O2

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Acaryochloris sp. CCMEE 5410

ncbi_strain_identifiers: CCMEE 5410

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Christensenella sp. UBA1076

ncbi_submitter: University of Queensland


ncbi_country: Brazil

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans 4VF1

ncbi_submitter: Cornell University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: USA: Tennessee

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas sp. GM49

ncbi_submitter: Oak Ridge National Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: Labbmm Biomol Group


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Norway

ncbi_isolation_source: Wild bird

ncbi_strain_identifiers: 2016-02-324;ecotype;Quinolone resistant

ncbi_submitter: NORWEGIAN VETERINARY INSTITUTE


ncbi_country: Colombia: La Guajira

ncbi_isolation_source: water

ncbi_organism_name: Vibrio furnissii

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_country: Canada: London

ncbi_isolation_source: fecal material

ncbi_organism_name: Oxalobacter aliiformigenes

ncbi_submitter: University of Western Ontario


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-3097

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: Rumen uncultured genome hRUG874

ncbi_submitter: THE ROSLIN INSTITUTE


gtdb_type_species_of_genus: t

ncbi_country: China: Ganzi Prefecture

ncbi_isolation_source: Water

ncbi_organism_name: Trichothermofontia sichuanensis B231

ncbi_submitter: Peking University Shenzhen Graduate School


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Candidatus Tisiphia;x__unclassified Candidatus Tisiphia;s__Candidatus Tisiphia endosymbiont of Mystacides longicornis


ncbi_country: Italy: Udine

ncbi_organism_name: Lactococcus garvieae UNIUD074

ncbi_submitter: UNIVERSITY OF OVIEDO


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Candidatus Eutrophobius brisbanensis

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Eutrophobiales;f__Candidatus Eutrophobiaceae;g__Candidatus Eutrophobius;s__Candidatus Eutrophobius brisbanensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Eutrophobiales;f__Candidatus Eutrophobiaceae;g__Candidatus Eutrophobius;s__Candidatus Eutrophobius brisbanensis


ncbi_country: China: Zhejiang

ncbi_isolation_source: gastroscopic antral biopsy specimen

ncbi_organism_name: Helicobacter pylori wls-5-7

ncbi_submitter: Academy of Military Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_assembly_name: Clostridium diolis DSM 15410 Genome sequencing

ncbi_country: China: Shanghai

ncbi_organism_name: Clostridium diolis DSM 15410

ncbi_submitter: State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium diolis;x__Clostridium diolis DSM 15410


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Uppsala University


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Methylorubrum extorquens

ncbi_submitter: BIOFORTE-LAB


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_12_FULL_42_22


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Acinetobacter johnsonii


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Teesside University


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Acidovorax delafieldii

ncbi_submitter: University of Queensland


ncbi_country: USA: NM

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Cochin University of Science and Technology


ncbi_country: Thailand

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Clostridium hydrogenum

ncbi_submitter: Chulalongkorn University


ncbi_country: Viet Nam:Hanoi

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii


ncbi_country: Brazil

ncbi_isolation_source: chicken piece (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG11898

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC086554

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Xinjiang

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Providencia huashanensis

ncbi_submitter: Huashan Hospital of Fudan university


ncbi_country: Bangladesh

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: Nepal

ncbi_isolation_source: nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_country: South Korea: Damyang-gun

ncbi_isolation_source: agricultural soiil

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Center for industrialization of agriculture and livestock microorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Allofournierella sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: stool from breast-fed infant

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UMass Amherst


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Thermoanaerobaculales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Synergistes sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: India: Dholpur; Rajasthan

ncbi_isolation_source: roots of field-grown chickpea in a rain-fed area

ncbi_organism_name: Pseudomonas putida MTCC 5279

ncbi_submitter: CSIR-National Botanical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas putida group;s__Pseudomonas putida;x__Pseudomonas putida MTCC 5279


ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_organism_name: Enterobacter hormaechei


ncbi_submitter: Cepheid


ncbi_assembly_name: Rumen uncultured genome RUG11312

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Halieaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Human fecal samples

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: microbial pathogenic ecology group


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_submitter: Saint-Louis Hospital


ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces sp. NPDC058656

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Cysteiniphilum sp. E12A11

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Chinese Medicine


ncbi_submitter: Delft University of Technology


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: UIUC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Streptomyces gardneri


ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Hydrogenobaculum sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Candidatus Xenobia bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Candidatus Xenobia;x__unclassified Candidatus Xenobia;s__Candidatus Xenobia bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: uncultured Acidimicrobium sp.


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Georgenia deserti

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: manure

ncbi_organism_name: Thermomicrobia bacterium

ncbi_submitter: zhejiang university


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_submitter: University of Milan


ncbi_organism_name: Streptomyces sp. NPDC090131

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Nanchang; Poyang Lake

ncbi_isolation_source: wetland soil

ncbi_organism_name: Exiguobacterium mexicanum

ncbi_submitter: Jiangxi Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium mexicanum


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: insect on Acer sp.

ncbi_organism_name: Serratia symbiotica

ncbi_submitter: Queen Mary University of London


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Actinomyces sp.


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae SGBS010

ncbi_submitter: MD Anderson Cancer Center


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Yersinia pseudotuberculosis B-7194

ncbi_submitter: UPSUD


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: CCM

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Paenibacillus sp. 1P03SA

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Spain

ncbi_isolation_source: deteriorated sandstone historic building

ncbi_organism_name: Modestobacter muralis

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Comenius University Science Park


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Michigan


ncbi_country: France

ncbi_isolation_source: Cheese

ncbi_organism_name: Psychrobacter celer

ncbi_submitter: INRA


ncbi_country: China: East China Sea

ncbi_isolation_source: coral reef [ENVO:00000150]

ncbi_organism_name: Qipengyuania vulgaris

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Poland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Serratia marcescens


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Beef Wors

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Houston

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Houston Methodist Hospital


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: Nigeria

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University


ncbi_assembly_name: freshwater MAG --- MJ110802A_bin-041

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: France: Nancy

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: CHU de Rennes


ncbi_organism_name: Shumkonia mesophila

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Nisaea sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Germany

ncbi_isolation_source: animal

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Stenotrophomonas sepilia

ncbi_submitter: Jawaharlal Nehru University


ncbi_country: Thailand

ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: forest soil

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_assembly_name: freshwater MAG --- A-3_bin-133

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Holophagaceae bacterium


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: EMG


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1267

ncbi_submitter: Broad Institute


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thalassolituus sp. UBA1505

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_country: Russia: Moscow

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: China: Shanghai

ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Saccharibacillus sacchari DSM 19268

ncbi_submitter: JGI


ncbi_country: China: Shenzhen

ncbi_isolation_source: Throat swab 10

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_country: Netherlands

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Animal Quarantine Service, MAFF

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: cold seep

ncbi_organism_name: Kiritimatiellales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_submitter: University of Zurich


ncbi_isolation_source: chicken tissues

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Kordiimonadales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: CLUE-TERRA


ncbi_country: Viet Nam: Phu An; Thanh Da; Phuc Tho

ncbi_isolation_source: root of maize

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: ENDOBICA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA: Boston

ncbi_isolation_source: Urine

ncbi_organism_name: Enterobacter roggenkampii MGH 54

ncbi_strain_identifiers: MGH 54

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter roggenkampii;x__Enterobacter roggenkampii MGH 54


ncbi_assembly_name: Rumen uncultured genome RUG13055

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: plants

ncbi_organism_name: Xanthomonas vesicatoria

ncbi_strain_identifiers: BNM 214

ncbi_submitter: Instituto Tecnologico Agrario de Castilla y Leon


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: human gut

ncbi_organism_name: Vibrio furnissii

ncbi_submitter: EMG


ncbi_assembly_name: Assembly 1

ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni 255

ncbi_submitter: University of Exeter


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Instituto de Quimica


ncbi_country: China: Jinhua

ncbi_isolation_source: excrement

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Jinhua Central Hospital


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Porphyromonadaceae bacterium UBA6831

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Planktomarina temperata

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: China: Xinjiang

ncbi_isolation_source: mixed soil

ncbi_organism_name: Paractinoplanes aksuensis

ncbi_submitter: College of Life Sciences


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 639672-46


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Brocadiales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;x__unclassified Candidatus Brocadiales;s__Candidatus Brocadiales bacterium


ncbi_country: Russia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Research Institute of Physical-Chemical Medicine


ncbi_country: Hungary

ncbi_organism_name: Shigella dysenteriae

ncbi_strain_identifiers: HNCMB 20080

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: nares

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: Japan: Kanagawa

ncbi_submitter: The New Zealand Institute for Plant & Food Research Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae ICMP 19103


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: blood culture

ncbi_organism_name: Bergeyella cardium

ncbi_strain_identifiers: BCV

ncbi_submitter: Shandong University


ncbi_organism_name: Candidatus Avelusimicrobium fimicolum

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Eubacterium plexicaudatum

ncbi_submitter: EMG


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human skin

ncbi_submitter: Agroscope


ncbi_organism_name: Brevibacillus formosus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Spain

ncbi_organism_name: Mycoplasma mycoides subsp. capri

ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri


ncbi_organism_name: Marinifilaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Germany: Hamburg

ncbi_isolation_source: groin swab

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: PA

ncbi_organism_name: Shigella flexneri

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Arachidicoccus sp.

ncbi_submitter: University of Manitoba


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile Y184

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Denver; CO

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Colorado


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Toho University


ncbi_country: China: Hangzhou

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: ocular surface swab

ncbi_submitter: Robert Koch Institute


ncbi_country: Italy

ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: United Kingdom: Aberystwyth

ncbi_isolation_source: throat

ncbi_organism_name: Fusobacterium necrophorum

ncbi_submitter: Cardiff Metropolitan University


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: Lake Malyi Kasytui; a shallow soda reservoir

ncbi_organism_name: Thiorhodospira sibirica ATCC 700588

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA4220

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4220


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus agalactiae CCUG 49100

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: China: Zhengzhou

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Bartonella henselae

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Caecum


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mural paintings

ncbi_organism_name: Virgibacillus necropolis

ncbi_submitter: Kyung Hee University


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA6209


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Haiti

ncbi_organism_name: Vibrio cholerae O1 str. 2010EL-1798

ncbi_submitter: Centers for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. 2010EL-1798


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Mycobacterium tuberculosis 49-02

ncbi_submitter: JLU


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 622731-39


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: USA: Hawaii; station ALOHA

ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: University of Haifa


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Spyradocola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Christensenellales;f__Christensenellaceae;x__Christensenellaceae incertae sedis;g__Candidatus Spyradocola;x__unclassified Candidatus Spyradocola;s__Candidatus Spyradocola sp.


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Korea national university of transportation


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Bacillus licheniformis strain F2-1

ncbi_country: Australia: Victoria

ncbi_isolation_source: concentrated milk

ncbi_organism_name: Bacillus licheniformis F2-1

ncbi_submitter: The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus licheniformis;x__Bacillus licheniformis F2-1


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Porphyromonadaceae bacterium UBA6329

ncbi_submitter: University of Queensland


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Pennsylvania; Porcupine Run

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: University of California Davis


ncbi_submitter: National Institutes of Health, Malaysia


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Kenya: Kibera

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Collinsella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Henan

ncbi_isolation_source: probiotic product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: south china agriculture university


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Guangxi Academy of Sciences, China


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: toilet

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Dyadobacter subterraneus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Candidatus Aldehydirespirator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Aquirufa sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Salmonella sp. SKLX062568

ncbi_submitter: Zhejiang university


ncbi_organism_name: Egbenema sp. FJBBOT/2019

ncbi_submitter: Somaiya Vidyavihar University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Yangzhou University


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Rickettsia aeschlimannii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Hydrogenophaga intermedia

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Scatavimonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Scatavimonas;x__unclassified Candidatus Scatavimonas;s__Candidatus Scatavimonas sp.


ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_submitter: University of Georgia


ncbi_organism_name: Nesterenkonia aurantiaca

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Streptomyces avidinii

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: China Jiliang University


ncbi_organism_name: uncultured Rhodopila sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Gemella sanguinis

ncbi_submitter: EMG


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_country: Spain: Mar Menor (Region de Murcia)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad de Alicante


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: Nanjing Agricultural University