ncbi_assembly_name: Rumen uncultured genome RUG265

ncbi_organism_name: uncultured Bacteroidales bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Pacific Ocean: Okinawa Trough

ncbi_genome_representation: full

ncbi_isolation_source: deep seawater

ncbi_organism_name: Halopseudomonas oceani

ncbi_submitter: DSMZ culture collection

ncbi_type_material_designation: assembly from type material


gtdb_representative: f

ncbi_country: Finland

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Brazil

ncbi_isolation_source: feces (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_assembly_level: Scaffold

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Granulicatella adiacens

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Broiler parent78

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Center for Laboratory Medicine


ncbi_organism_name: Trueperella sp.

ncbi_submitter: University of Minnesota


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR92 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Cellvibrionales;f__Porticoccaceae;x__unclassified Porticoccaceae;x__SAR92 clade;x__environmental samples;s__uncultured SAR92 cluster bacterium


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0301867.4

ncbi_submitter: IGS


ncbi_assembly_level: Complete Genome

ncbi_country: USA: MI

ncbi_isolation_source: lettuce

ncbi_submitter: FDA


ncbi_country: USA: MD

ncbi_organism_name: Shigella flexneri

ncbi_strain_identifiers: DMB SH20024

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MS

ncbi_strain_identifiers: Transconjugant 2A

ncbi_submitter: Univ Mississippi Medical Center


ncbi_isolation_source: human gut

ncbi_organism_name: Turicibacter sanguinis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Lachnoclostridium avicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides bouchesdurhonensis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Peking University Shenzhen Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Schaalia hyovaginalis

ncbi_refseq_category: reference genome

ncbi_submitter: AAFC


ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: Nanjing University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: Mycobacterium tuberculosis SUMu007

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_isolation_source: swine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: saliva

ncbi_organism_name: Aggregatibacter aphrophilus

ncbi_submitter: Umea University


ncbi_organism_name: Desulfatiglandaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13742

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_country: China: Kunming

ncbi_isolation_source: rhizosphere soil of Ageratina adenophora

ncbi_organism_name: Massilia sp. YIM B02443

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Oxalobacteraceae;x__Telluria group;g__Massilia;x__unclassified Massilia;s__Massilia sp. YIM B02443


ncbi_organism_name: Sorangium sp. So ce1128

ncbi_strain_identifiers: So ce1128

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce1128


ncbi_isolation_source: anammox granule sludge

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Chongqing university


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Spine

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_country: Laos

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Leicester


ncbi_country: USA: Minnesota

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_assembly_name: Rumen uncultured genome RUG14446

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_level: Chromosome

ncbi_organism_name: Treponema pallidum subsp. pertenue

ncbi_submitter: Masaryk University


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Institute of plant biology and biotechnology


ncbi_organism_name: Pseudomonas syringae pv. coryli

ncbi_submitter: Tecnologico de Monterrey

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas syringae pv. coryli


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Terriglobus sp.


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of California, Irvine


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Brucella abortus

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Streptomyces cinereoruber

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas sp. ALK-5

ncbi_submitter: Biosystems Engineering Lab


ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Hyphomicrobium sp. B1

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Roseateles sp.

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. SHL020

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. SHL020


ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolate: SZAS TMP-57

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS TMP-57

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_assembly_name: freshwater MAG --- Loc081215-9m_bin-2258

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: National Taiwan University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolate: Arthrobacter sp. 8AJ

ncbi_organism_name: Arthrobacter sp. 8AJ

ncbi_strain_identifiers: Arthrobacter sp. 8AJ

ncbi_submitter: Elham Karimi


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Exilispira sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli FAP2

ncbi_submitter: University Medical Center Utrecht


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: CDPHE SARS-CoV-2 submissions


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Tunturiibacter gelidiferens

ncbi_submitter: Rutgers University


ncbi_strain_identifiers: 23115;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Hesse; Gross-Gerau

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: New Zealand

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Massey University


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Victoria


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: France

ncbi_isolation_source: clinical

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INSTITUT DE GENETIQUE ET MICROBIOLOGIE


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Modestobacter marinus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Brazil: Ribeirao Preto

ncbi_isolation_source: stool

ncbi_submitter: State University of Campinas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus USA_11

ncbi_submitter: Broad Institute


ncbi_country: South Korea

ncbi_isolation_source: the respiratory tract of a pig with swine respiratory disease

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Konkuk university


ncbi_country: China: Sichuan

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Mycobacteroides salmoniphilum

ncbi_submitter: Uppsala University


ncbi_assembly_name: Rumen uncultured genome RUG12964

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_submitter: Peking University Third Hospital


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: New Zealand: Auckland

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Trinity College Dublin


ncbi_country: China: Tibet

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Microcoleus sp. Pol10D4

ncbi_submitter: Palacky University Olomouc


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: NanJing University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: China

ncbi_isolation_source: cecum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing agricultural university


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environment

ncbi_organism_name: Acinetobacter baumannii


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: Tang lab


ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microcoleus sp. A2-D2


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Russia

ncbi_isolation_source: not known


ncbi_country: USA: Virginia

ncbi_organism_name: Candidatus Malacoplasma girerdii

ncbi_submitter: Virginia Commonwealth University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of Oklahoma


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Italy: Bologna

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: New Zealand: Manawatu

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: fecal sample

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Chitinophagales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI


ncbi_isolate: Halomonas sp. 156

ncbi_organism_name: Halomonas sp. 156

ncbi_strain_identifiers: Halomonas sp. 156

ncbi_submitter: Station Biologique de Roscoff - Sorbonne Universite/CNRS


ncbi_isolation_source: human blood culture

ncbi_organism_name: Neisseria sp. Marseille-Q6792

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: SC


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Israel

ncbi_isolation_source: udder acute mastitis

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Roseateles sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Candidatus Avidehalobacter sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Peptococcaceae;x__Peptococcaceae incertae sedis;g__Candidatus Avidehalobacter;x__unclassified Candidatus Avidehalobacter;s__Candidatus Avidehalobacter sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_country: USA: Luquillo LTER; Puerto Rico

ncbi_isolation_source: Short Cloud Forest soil

ncbi_organism_name: [Enterobacter] lignolyticus SCF1

ncbi_submitter: US DOE Joint Genome Institute


ncbi_organism_name: Herbaspirillum sp. 1173

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED14

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED14


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Actinokineospora sp.

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Streptomyces sp. NBC_00827

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Phycisphaera sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Austria

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: South Korea: Jeju

ncbi_isolation_source: dried seaweed

ncbi_organism_name: Microbacterium galbinum

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: India: Vellore

ncbi_isolation_source: Respiratory specimen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College, Vellore


ncbi_isolation_source: Tidal flat sediment collected from the coast at Boseong on the south Sea in South Korea

ncbi_organism_name: Roseovarius litorisediminis

ncbi_strain_identifiers: CECT 8287

ncbi_submitter: UVEG


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Jiangnan University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Pseudomonas sp. DE0157

ncbi_submitter: BGI


ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Ganzi Prefecture of western Sichuan Province

ncbi_organism_name: Thermosynechococcus sichuanensis E542

ncbi_submitter: Peking University Shenzhen Graduate School


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: ascites

ncbi_submitter: The Fourth Hospital of Hebei Medical University


ncbi_country: Germany

ncbi_isolation_source: turkey

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Qingdao

ncbi_isolation_source: sea water

ncbi_organism_name: Vibrio sp. T187

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfonatronovibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


gtdb_type_species_of_genus: t

ncbi_isolation_source: Clone isolated from the evolution experiment described in Ketola et al. 2013 (doi: 10.1111/evo.12148)

ncbi_submitter: UNIVERSITY OF JYVASKYLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens ATCC 13880


ncbi_organism_name: Desulfuromonas thiophila

ncbi_submitter: University of Waterloo


ncbi_organism_name: Coprothermobacter proteolyticus

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Weissella cibaria

ncbi_submitter: University of Chicago


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: abscess

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Serratia marcescens

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;s__Candidatus Taylorbacteria bacterium RIFCSPLOWO2_01_FULL_50_130


ncbi_country: France: Paris

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Gallionellaceae bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_organism_name: Micrococcus luteus


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Butyricimonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Rain

ncbi_organism_name: Xanthomonas sp. 3307

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Thailand: Chiang Mai

ncbi_organism_name: Gluconobacter aidae

ncbi_submitter: National Center for Genetic Engineering and Biotechnology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Isolated from a parent strain culture that was stored at 4C for 84 days

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Illinois Institute of Technology


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: protein solution

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Chitinophagia bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Enterococcus sp. DIV1315a

ncbi_submitter: Broad Institute


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom: Newcastle

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: bioMerieux


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Hoylesella pleuritidis

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: University of Groningen


ncbi_isolation_source: gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Microcoleus sp. herbarium14

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: United Kingdom: Kent

ncbi_isolation_source: Preputial washing sample

ncbi_organism_name: Campylobacter fetus subsp. venerealis

ncbi_submitter: Faculdade de Medicina Veterinaria, Universidade de Lisboa


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_country: Poland

ncbi_organism_name: Brevibacillus brevis

ncbi_submitter: McMaster University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:65

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:65


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Yangzhou university


ncbi_organism_name: Herbiconiux liukaitaii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: MRD-YKTA

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Mississippi State University


ncbi_organism_name: Lentihominibacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Dysosmobacter sp.


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: HKUST


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Southern University of Science and Technology


ncbi_country: Australia: Brisbane

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Microcystis panniformis

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: soil metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Bdellovibrionota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: Spain: Granada

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_country: India: Tamilnadu

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. IC4059

ncbi_submitter: university of Oxford


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Hydrococcus sp. CRU_1_1

ncbi_submitter: University of Wisconsin, Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Pleurocapsales;f__Hydrococcaceae;g__Hydrococcus;x__unclassified Hydrococcus (in: cyanobacteria);s__Hydrococcus sp. CRU_1_1


ncbi_organism_name: Ruegeria pomeroyi DSS-3

ncbi_submitter: TIGR


ncbi_organism_name: Sinobaca qinghaiensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mycoplasmoides genitalium

ncbi_submitter: University of Alabama at Birmingham


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fluviibacter sp.

ncbi_submitter: Stanford University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Boston

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella variicola

ncbi_strain_identifiers: MGH 68

ncbi_submitter: Broad Institute


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Caecum


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Rectinema sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Amycolatopsis sp. NPDC049688

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Oribacterium parvum

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Blautia obeum

ncbi_submitter: BGI


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bacillus aerophilus

ncbi_submitter: Kyungpook National University


ncbi_country: Denmark

ncbi_isolation_source: faeces

ncbi_submitter: University of Southampton


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: China: Shandong

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_submitter: Aga Khan University, Nairobi


ncbi_organism_name: uncultured Kiritimatiellota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Kiritimatiellota;x__environmental samples;s__uncultured Kiritimatiellota bacterium


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD15765

ncbi_submitter: Broad Institute


ncbi_country: China: Changyi of Shandong Province

ncbi_isolation_source: offshore sediment of a Tamarix chinensis forest

ncbi_organism_name: Pseudoroseicyclus tamaricis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_country: China: Sichuan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Yellowstone National Park; Wyoming

ncbi_isolation_source: soil from geothermal hot spring

ncbi_organism_name: Thermoanaerobacter sp. YS13

ncbi_submitter: University of Manitoba


ncbi_country: Canada: Waterloo

ncbi_isolation_source: Fish tissue

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Guelph


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Bern


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: blood

ncbi_organism_name: Yersinia enterocolitica subsp. palearctica

ncbi_submitter: Instituto Oswaldo Cruz/ Fiocruz


ncbi_country: USA: FL

ncbi_isolation_source: avian macaw cloacae

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 130

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A27

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Paracoccaceae bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Albidovulum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Austria: Almkanal in Salzburg (city)

ncbi_isolation_source: Artificial creek Almkanal

ncbi_organism_name: Aquirufa antheringensis

ncbi_submitter: University of Innsbruck


ncbi_assembly_name: Rumen uncultured genome RUG13774

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Psychrobacter sp. UBA4193

ncbi_submitter: University of Queensland


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_country: China: Beijing

ncbi_isolation_source: anaerobic digestion tank

ncbi_organism_name: Xiashengella succiniciproducens

ncbi_submitter: State Key Laboratory of Microbial Resources


ncbi_assembly_name: freshwater MAG --- Ja_bin-2679

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Yunnan Province; Tengchong; Rehai National Park

ncbi_isolation_source: geothermally heated soil

ncbi_organism_name: Calidithermus terrae

ncbi_submitter: Biocant


ncbi_organism_name: Bradyrhizobium sp. SZCCHNPS10062

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Gambia

ncbi_isolation_source: NP swab

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_assembly_name: Echerichia coli 4222

ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Paris Sud


ncbi_country: Canada: Val-d Or

ncbi_isolation_source: surface-sterilized gnotobiotic actinorhizal nodule; gnotobiotic speckled alder inoculated with speckled alder rhizosphere soil

ncbi_organism_name: Bradyrhizobium sp. Bra78

ncbi_submitter: Universite de Sherbrooke


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom: Scotland; Fife

ncbi_isolation_source: lung

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Cheyenne; Wyoming

ncbi_isolation_source: soil

ncbi_organism_name: Peribacillus simplex

ncbi_submitter: Washington University School of Medicine


ncbi_country: Mexico: San Luis Potosi

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: USA: WA; Seattle

ncbi_submitter: Broad Institute


ncbi_organism_name: Capnocytophaga sputigena

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Oculatellaceae cyanobacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: University of Wyoming


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Agelastica alni


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Hydrotalea flava

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG10557

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Klebsiella sp. 96093

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Novosphingobium resinovorum

ncbi_submitter: Estacion Experimental del Zaidin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2606217738 annotated assembly

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Streptomyces sp. NPDC056453

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhodopseudomonas sp. B29

ncbi_submitter: Kazusa DNA Research Institute


ncbi_organism_name: Brevundimonas sp. UYEF29

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Texas

ncbi_isolation_source: Oral

ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Stenotrophomonas sp. FSL W7-1447

ncbi_submitter: Penn State


ncbi_isolation_source: blood sample taken from a clinical pediatric case of invasive pneumococcal disease

ncbi_organism_name: Streptococcus pneumoniae PNI0164

ncbi_submitter: Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Actinomyces sp. HMSC06A08

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Connecticut Graf Lab


ncbi_isolation_source: rat gut

ncbi_organism_name: Sutterellaceae bacterium UBA7100

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Kyrpidia sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: plant metagenome

ncbi_organism_name: uncultured Bradyrhizobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Heiligendamm

ncbi_isolation_source: polystyrene from seawater

ncbi_organism_name: Rubripirellula tenax

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_country: Canada

ncbi_isolation_source: meat

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 1/2a;x__Listeria monocytogenes serotype 1/2a str. 10-0815


ncbi_country: USA: Lahey Hospital & Medical Center

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics GmbH


ncbi_country: Germany: Freising

ncbi_isolation_source: feces

ncbi_organism_name: Porcincola intestinalis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Erasmus University Medical Center


ncbi_country: Hong Kong

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: HKU


ncbi_organism_name: synthetic Escherichia coli C321.deltaA

ncbi_submitter: Yale University


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Monash University


ncbi_country: USA: West Haven; CT

ncbi_isolation_source: gut

ncbi_organism_name: Bartonella apis

ncbi_submitter: University of Lausanne


ncbi_organism_name: Catenibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Halopseudomonas pertucinogena

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Yantai University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_country: Viet Nam: Tra Vinh province

ncbi_organism_name: Streptomyces sp. SS52

ncbi_submitter: Center for Research and Application in Bioscience


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1002

ncbi_submitter: Broad Institute


ncbi_isolation_source: freshwater

ncbi_organism_name: Micrococcales bacterium UBA7472

ncbi_submitter: University of Queensland


ncbi_country: China: Chengdu

ncbi_isolation_source: abdominal drainage

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_isolation_source: Pus sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Rajiv Gandhi Centre for Biotechnology


ncbi_submitter: University of Pretoria


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_organism_name: Salmonella sp. NW489

ncbi_submitter: Sichuan University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Halomonas sp. PA16-9

ncbi_submitter: Third institute of Oceanography,Ministry of Natural Resources


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Turku


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom: Scotland; Aberdeen Royal Infirmary

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Aberdeen


ncbi_submitter: National Livestock&Fisheries Development Program

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Oliverpabstia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Ain Shams University, Faculty of Pharmacy


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. Bc228

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bc228


ncbi_country: China

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: China: Ningbo

ncbi_isolation_source: urine

ncbi_submitter: Ningbo First Hospital


ncbi_country: USA: New York State

ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Cornell University


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Nonomuraea angiospora

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Parabacteroides distasonis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Cupriavidus sp. Met-2

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_organism_name: Nocardia salmonicida


ncbi_organism_name: Iamia sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Gemmiger qucibialis


ncbi_submitter: University of Southern California


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Vibrio aerogenes

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Thiocapsa sp. C3-sup

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Bradymonadales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Bradymonadales;x__environmental samples;s__uncultured Bradymonadales bacterium


ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Philippine Genome Center


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Acidithiobacillus ferriphilus

ncbi_submitter: Central South University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_strain_identifiers: Gazipur 4

ncbi_submitter: University of California, Davis


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Mozambique

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Acidobacteria bacterium ACB2

ncbi_submitter: Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteria bacterium ACB2


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia: Johor

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for medical research


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Kanpur

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. IC4061

ncbi_submitter: university of Oxford


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Hangzhou

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin52

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MDV bin52

ncbi_submitter: Monash University


ncbi_organism_name: Deinococcus deserti

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Legionellales bacterium UBA6603

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Hafnia paralvei


ncbi_organism_name: Lachnospiraceae bacterium 10-1


ncbi_country: Myanmar

ncbi_isolation_source: meadow-gley soil under rice

ncbi_organism_name: Clostridium polyendosporum

ncbi_submitter: Institute of Livestock and Grassland Science, NARO


ncbi_organism_name: Mesorhizobium sp. L48C026A00

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Brazil: Nova Europa City; State of Sao Paulo

ncbi_isolate: CIF 1

ncbi_isolation_source: Immature compost filter cake

ncbi_organism_name: Thermomonospora sp. CIF 1

ncbi_strain_identifiers: CIF 1

ncbi_submitter: UNESP/FCAV


ncbi_country: China: Hunan

ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Total Genomics Solution co.


ncbi_organism_name: Escherichia coli O26:H11 str. CVM10030

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. CVM10030


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acetivibrio thermocellus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: University of Oxford


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- AM_bin-2588

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Faecimorpha stercoravium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Faecimorpha;s__Candidatus Faecimorpha stercoravium


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: MOX L

ncbi_isolation_source: methanogen symbiont from mussel gill epithellium

ncbi_strain_identifiers: MOX L

ncbi_submitter: CRC 1182 Origin and Function of Metaorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__Bathymodiolus brooksi methanotrophic gill symbiont


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Loyola University Chicago


ncbi_assembly_name: Rumen uncultured genome RUG13326

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Sharpea azabuensis

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Tourcoing

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: CHU de Rennes


ncbi_submitter: RPI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O10:K5(L):H4;x__Escherichia coli O10:K5(L):H4 str. ATCC 23506


ncbi_country: South Korea

ncbi_organism_name: Peribacillus faecalis

ncbi_submitter: Korean Research Institute of Bioscience and Biotechnology


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_country: Brazil: Dourados


ncbi_organism_name: Pantoea stewartii

ncbi_strain_identifiers: ICMP 257

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Neobacillus vireti

ncbi_submitter: Auburn University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_country: Germany

ncbi_isolation_source: healthy cow feces

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: Israel: Tel Aviv

ncbi_isolation_source: rectal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: China

ncbi_isolation_source: water

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Capital Institute of Pediatrics,Beijing, China


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Oculatellaceae cyanobacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AM18-15

ncbi_submitter: BGI


ncbi_country: Australia: Darwin; Northern Territory

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Menzies School of Health Research


ncbi_country: Finland

ncbi_submitter: University of Helsinki


ncbi_country: China: South China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Marinifilum breve

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Ornithocaccomicrobium;s__Candidatus Ornithocaccomicrobium faecavium


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: UW-Madison


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: USP


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: human; urinary tract infection

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: Human (feces)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 31.H.09


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gaminara


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_country: Colombia: Pereira

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Switzerland: Lake Zurich; 5 m depth

ncbi_organism_name: Candidatus Planktophila dulcis

ncbi_submitter: University of Zurich

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Italy

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Candidatus Purcelliella pentastirinorum

ncbi_submitter: University of Hawaii at Manoa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Purcelliella;s__Candidatus Purcelliella pentastirinorum


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Methylotenera sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: Israel

ncbi_isolation_source: cowshed 5

ncbi_submitter: Heriot-Watt University


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Plymouth


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Parvimonas micra

ncbi_submitter: China CDC


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Kenya: Laikipia

ncbi_isolation_source: Camel


ncbi_country: Japan: Niigata

ncbi_isolation_source: sludge

ncbi_organism_name: Pelotomaculum propionicicum

ncbi_strain_identifiers: MGP

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas sp. 18113298

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Steroidobacter sp.

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacteroides congonensis


ncbi_country: Netherlands

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Birgitta Duim's shared submissions


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: Japan: Tokyo

ncbi_organism_name: Christensenella minuta

ncbi_submitter: BGI-shenzhen


ncbi_country: Austria

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces ardesiacus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas salmasensis

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_isolation_source: pork

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_country: Taiwan

ncbi_isolation_source: Taichung Veterans General Hospital

ncbi_strain_identifiers: Gordon

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Paludibacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shanghai Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Sulfitobacter sp.


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halanaerobiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Nonlabens sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus sp. 11-B-312

ncbi_submitter: the seqafrica consortium


ncbi_country: France: Rennes

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Porticoccus hydrocarbonoclasticus

ncbi_submitter: University of Queensland


ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: University College Cork


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA153

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Kitasatospora cineracea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Gongxiaoshe pool;Tengchong; Baoshan; Yunnan

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Kryptobacter tengchongensis

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Kryptoniota;c__;o__;f__;g__Candidatus Kryptobacter;s__Candidatus Kryptobacter tengchongensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;g__Candidatus Kryptobacter;s__Candidatus Kryptobacter tengchongensis


ncbi_country: Russia: Moscow

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: France: Le Kremlin Bicetre

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CHRU Besancon


ncbi_submitter: University of Lethbridge


ncbi_country: India: Vellore

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Christian Medical College


ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M52055

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: freshwater

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. RI_10P069


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Bilophila sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Microthrixaceae bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_submitter: MRSN BI Team


ncbi_country: Grenada

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: iguana

ncbi_strain_identifiers: ATCC BAA-1673

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Poona;x__Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-5930

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Sphingobacteriales bacterium 16-39-50


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sri Balaji Vidyapeeth


ncbi_organism_name: Prevotella veroralis


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: freshwater MAG --- A14_bin-1248

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Holophagaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: human feces in bioreactor

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Paenibacillus sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: farm environment

ncbi_submitter: University of Bern


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: China: Hangzhou

ncbi_isolation_source: stomach muscularis externa

ncbi_organism_name: Leclercia sp. W6

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: metabat2_6755_HET_CTRL_hifiasm.367 MAG

ncbi_organism_name: Candidatus Blautia pullistercoris

ncbi_strain_identifiers: metabat2_6755_HET_CTRL_hifiasm.367 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: USA: New York City

ncbi_isolation_source: meninges

ncbi_organism_name: Streptococcus azizii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Streptomyces sp. NPDC047804

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India: Bay of Bengal

ncbi_isolation_source: abandoned salt pan

ncbi_organism_name: Synechococcus sp. BDU 130192

ncbi_submitter: International Centre for Genetic Engineering and Biotechnology, New Delhi, India


ncbi_country: South Korea

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Yonsei university college of medicine


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: healthy mouse fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_strain_identifiers: mpk

ncbi_submitter: Eurofins GmbH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_organism_name: Acetomicrobium sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: vagina

ncbi_organism_name: Gardnerella vaginalis JCP8070

ncbi_submitter: Washington University


ncbi_organism_name: Macrococcus sp. CCM 2573

ncbi_submitter: Masaryk University, Faculty of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Macrococcus;x__unclassified Macrococcus;s__Macrococcus sp. CCM 2573


ncbi_organism_name: Streptomyces sp. NPDC059467


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Florence


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paraburkholderia azotifigens

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Gardnerella leopoldii

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Salmonella sp. NW996

ncbi_submitter: Sichuan University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Hyphomicrobiaceae bacterium


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus cereus group sp. BCN11

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN11


ncbi_organism_name: Ruminococcus callidus


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_submitter: National Centre for Infectious Diseases