ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Corynebacterium striatum


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Netherlands

ncbi_genome_representation: full

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 2826

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_assembly_level: Contig

ncbi_country: United Kingdom

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptomyces sp. PA03-5A

ncbi_submitter: Oregon State University


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillus atrophaeus


ncbi_organism_name: Agromyces sp. CCNWLW208

ncbi_submitter: Northwest A&F University


gtdb_representative: t

ncbi_isolation_source: freshwater

ncbi_organism_name: bacterium UBA7470


ncbi_isolate: SPRUCE 387

ncbi_organism_name: Terriglobia bacterium

ncbi_strain_identifiers: SPRUCE 387

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_level: Complete Genome

ncbi_assembly_name: L. paracasei E

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: E

ncbi_submitter: Helsinki University


ncbi_submitter: Finnish Food Authority


ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Mycobacterium sp. NPDC050041

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudarthrobacter oxydans


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 665

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;x__unclassified Francisella;s__Francisella endosymbiont of Hyalomma asiaticum


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Vibrio chagasii

ncbi_submitter: Tel Aviv University


ncbi_organism_name: uncultured Ornithinimicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: forest soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Planctomycetota bacterium


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_4 depth 0-3 cm

ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: biogas fermenter

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_organism_name: Listeria ivanovii subsp. ivanovii

ncbi_submitter: Collection de l'Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria ivanovii;sb__Listeria ivanovii subsp. ivanovii


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Point Judith; Narragansett; RI

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_country: Germany: Helgoland Roads

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Winogradskyella forsetii

ncbi_submitter: Mediterranean Institute For Advanced Studies


ncbi_isolation_source: mouse gut metagenome


ncbi_submitter: University of Waterloo


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Corynebacterium aquatimens

ncbi_submitter: University of Gothenburg - CCUG

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Monash University


ncbi_organism_name: Edaphocola sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Streptomyces sp. NPDC006415

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Upshore outside the box

ncbi_submitter: University of Basel


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Streptococcus canis

ncbi_submitter: University of Glasgow


gtdb_type_species_of_genus: t

ncbi_country: China

ncbi_isolation_source: animals feces

ncbi_organism_name: Faecalibacter macacae

ncbi_refseq_category: reference genome

ncbi_submitter: Yunnan University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Japan

ncbi_isolation_source: middle urine

ncbi_submitter: Toho university


ncbi_country: Thailand

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chiang Mai University


ncbi_country: Norway: Viken

ncbi_isolation_source: Silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_organism_name: Actinophytocola sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0614

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_assembly_level: Chromosome

ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: USA: NH

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-3975

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: activated sludge

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institutes of Food and Drug Control


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: The James Hutton Institute


ncbi_country: China: Qinghai Province

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Corynebacterium sp. 320

ncbi_submitter: China CDC


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Olleya namhaensis


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Yersinia pestis CMCC114001

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Banana shoot bio-fertilizer

ncbi_organism_name: Nonomuraea composti

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: infant saliva

ncbi_organism_name: Weissella cibaria

ncbi_strain_identifiers: CMU

ncbi_submitter: Oradentics


ncbi_country: China: Henan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;o__Eggerthellales;f__Eggerthellaceae;g__Gordonibacter;s__Gordonibacter massiliensis (ex Traore et al. 2017)


ncbi_country: Brazil: Cardoso Island; Cananeia

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Oxynema sp. CENA135

ncbi_submitter: University of Sao Paulo, Center for Nuclear Energy in Agriculture


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: Colon

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV122


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: France: Corsica; Sagone

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. MWH-Jannik1A5

ncbi_submitter: University of Innsbruck


ncbi_country: Czech Republic: Pardubice region

ncbi_isolation_source: genital tract swabs

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: State Veterinary Institute Prague


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG10457

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clostridium sp. UBA871

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG11882

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Cetobacterium somerae

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Alistipes shahii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Veillonella nakazawae

ncbi_submitter: Washington University in Saint Louis


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled pig faecal samples collected from floor of farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The REHAB Consortium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Anaerococcus sp.


ncbi_assembly_name: IMG-taxon 2654588195 annotated assembly

ncbi_organism_name: Aliicoccus persicus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC046197

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: HP-infected hydrangea

ncbi_organism_name: Hydrangea phyllody phytoplasma

ncbi_strain_identifiers: HP

ncbi_submitter: Laboratory of Plant Pathology, Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrI (Aster yellows group);s__Hydrangea phyllody phytoplasma


ncbi_country: France

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_country: Spain: Pyrenees

ncbi_isolation_source: sulfur spring

ncbi_organism_name: Roseospira navarrensis

ncbi_submitter: Bellevue University


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Technical University of Munich


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Aarhus University


ncbi_country: Switzerland: Lucerne

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: uncultured Sutterella sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_assembly_name: freshwater MAG --- VK_bin-2510

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of Iowa


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Halioglobus sp.

ncbi_submitter: marine college, shandong university


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: Beijing Genome Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Algoriphagus iocasae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Helicobacter rodentium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Sodaliphilus sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Anaplasma centrale str. Israel

ncbi_strain_identifiers: Israel

ncbi_submitter: USDA-ARS

ncbi_type_material_designation: assembly designated as reftype


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Spain

ncbi_organism_name: Vibrio parahaemolyticus S046

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S046


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: USA: Michigan

ncbi_isolation_source: Residence hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Corynebacterium glucuronolyticum


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Atopobium sp. UBA4279

ncbi_submitter: University of Queensland


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: HKUST


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Dysgonomonas sp. UBA5412


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: BGI


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Alistipes timonensis


ncbi_organism_name: Balneolaceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pittsburgh


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The British University in Egypt


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Staphylococcus sp. GDQ8D219P


ncbi_country: Spain: Asturias

ncbi_organism_name: Brevibacterium sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Germany: Frankfurt am Main

ncbi_organism_name: Proteus vulgaris

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Azohydromonas lata NBRC 102462

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Hong Kong

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA104

ncbi_submitter: Broad Institute


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_organism_name: Cellvibrionales bacterium UBA3090


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Ghent University Department of Pharmaceutical Sciences Laboratory of Pharmaceutical Microbiology


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Nanosynbacter sp.

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;x__unclassified Candidatus Nanosynbacter;s__Candidatus Nanosynbacter sp.


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albany


ncbi_country: USA

ncbi_isolation_source: Soil

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces violaceusniger group;s__Streptomyces hygroscopicus;sb__Streptomyces hygroscopicus subsp. hygroscopicus

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0148


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Baaleninema sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Serratia sarumanii

ncbi_submitter: University of the Philippines Los Banos


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Leyella stercorea


ncbi_organism_name: Faecalibacillus intestinalis


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of South Africa


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_organism_name: Agromyces sp. Marseille-Q5079

ncbi_submitter: IHU-MI


ncbi_organism_name: uncultured Robiginitalea sp.


ncbi_organism_name: Streptomyces hirsutus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Purdue University


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Achromobacter piechaudii

ncbi_submitter: Bern University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Chinese Academy of Agricultural Sciences (CAAS)


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_assembly_name: IMG-taxon 2636416046 annotated assembly

ncbi_organism_name: Pseudovibrio sp. Tun.PSC04-5.I4

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 319

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: SNUC 2121

ncbi_submitter: University of Calgary


ncbi_organism_name: Pantoea allii

ncbi_submitter: University of Georgia


ncbi_country: Svalbard: Jan Mayen

ncbi_isolation_source: Arctic soil

ncbi_organism_name: Flavobacterium hiemivividum

ncbi_submitter: Kyonggi University


ncbi_country: USA: MA; Boston

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: BWH 80

ncbi_submitter: Broad Institute


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Germany: Insel Reichenau; Lake Constance

ncbi_isolation_source: soil sample bean agriculture

ncbi_organism_name: Pseudomonas sp. HB05

ncbi_submitter: University of Kontanz


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. CK184

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA:New York; Morrisania

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Denmark: Aarhus

ncbi_organism_name: Neobacillus sp. MM2021_6

ncbi_submitter: Aarhus University


ncbi_country: China: Hangzhou

ncbi_isolation_source: Vaginal secretion

ncbi_organism_name: Mobiluncus mulieris

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Guizhou; Fuquan

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: India: Adaguru; Chennarayapatna Taluk; Hassan district; Karnataka

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Rectal swab 1

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Central del Ecuador


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: Japan

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: ATA-LTC St140700

ncbi_submitter: ATA BIO TEKNOLOJI ILAC SANAYI VE TICARET LTD. STI


ncbi_country: China: Shandong

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Georgia

ncbi_isolation_source: environmental water

ncbi_submitter: USDA-ARS-USNPRC-RRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: Italy

ncbi_isolation_source: spinach

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Technology Sydney


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Wyoming

ncbi_isolation_source: retail meat

ncbi_submitter: University of Wyoming


ncbi_submitter: The University of Texas Health Sciences Center


ncbi_assembly_name: freshwater MAG --- Loclat_bin-12729

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Poland

ncbi_isolation_source: feces

ncbi_organism_name: Megasphaera stantonii

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Shigella sonnei

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_country: Russia: Arkhangelsk region

ncbi_isolation_source: Homemade kholodets

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Chryseobacterium sp. Leaf394

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acidiphilium sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium catenulatum;x__Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: wetland soil

ncbi_organism_name: Kaistia terrae

ncbi_submitter: University of Neuchatel


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Jiangxi

ncbi_organism_name: Kitasatospora viridis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Wallbacteria bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Walliibacteriota;x__unclassified Candidatus Wallbacteria;s__Candidatus Wallbacteria bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: University of Southern California


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Brazil: Carolina; Maranhao

ncbi_isolate: Desfum bin_9_GBBB08

ncbi_isolation_source: non-axenic (unialgal) sample in BG-11 medium

ncbi_organism_name: Phycisphaerales bacterium

ncbi_strain_identifiers: Desfum bin_9_GBBB08

ncbi_submitter: Instituto de Quimica


ncbi_country: USA

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Leifsonia shinshuensis


ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Czech Republic

ncbi_isolation_source: ear from patient with otitis media

ncbi_submitter: University of Birmingham

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter parvus;x__Acinetobacter parvus DSM 16617 = CIP 108168


ncbi_country: India:Tamil Nadu; Pichavaram mangroves

ncbi_isolation_source: mangrove

ncbi_organism_name: Vibrio porteresiae DSM 19223

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo AC


ncbi_country: Peru: Lima

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tahi Moana Above plume background

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Gansu

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 103

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 317

ncbi_submitter: University of Calgary


ncbi_organism_name: Streptomyces asiaticus

ncbi_submitter: Leibniz Institute DSMZ German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Michigan Department of Health and Human Services


ncbi_organism_name: Hungateiclostridiaceae bacterium KB18


ncbi_organism_name: Helcococcus kunzii

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Fictibacillus nanhaiensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: Kidney

ncbi_organism_name: Leptospira borgpetersenii serovar Hardjo

ncbi_strain_identifiers: NVSL S 818

ncbi_submitter: INDICASAT-AIP


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: not provided

ncbi_organism_name: Selenomonas felix


ncbi_organism_name: Isoptericola dokdonensis DS-3

ncbi_submitter: Yonsei University


ncbi_isolation_source: host s whole body

ncbi_organism_name: Buchnera aphidicola (Cinara cuneomaculata)

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_submitter: Quadram Institutte


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Anaerolineaceae bacterium UBA6073

ncbi_submitter: University of Queensland


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-337-I02

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22753;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: Germany

ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: TMW 2.1523_mutant_1

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Actinomadura rubrobrunea NBRC 15275

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_submitter: CFE, University of Coimbra


ncbi_country: South Africa: Pretoria

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Pretoria


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Oxford


ncbi_country: USA: MN

ncbi_isolation_source: root

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Streptomyces sp. NPDC021722

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0063

ncbi_submitter: Broad Institute


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: national health research institutes


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: Hospital of Volos


ncbi_country: USA

ncbi_isolation_source: aerobic seawater sample

ncbi_organism_name: Rhodobacterales bacterium LSUCC1028

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: BGI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: sewage

ncbi_organism_name: Acinetobacter sp. YH16039

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Kentucky

ncbi_organism_name: Prescottella equi

ncbi_submitter: The University of Edinburgh


ncbi_organism_name: Actinomycetota bacterium


ncbi_isolate: Bosea sp. 29B

ncbi_organism_name: Bosea sp. 29B

ncbi_strain_identifiers: Bosea sp. 29B

ncbi_submitter: Elham Karimi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. 29B


ncbi_country: Spain: Madrid

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Megamonas sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Saudi Arabia

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces vinaceus

ncbi_strain_identifiers: NRRL B-1733

ncbi_submitter: USDA/ARS/NCAUR


ncbi_isolation_source: stool

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Candidatus Darwinibacter acetoxidans


ncbi_organism_name: Microgenomates group bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Psychromonas sp. PT13

ncbi_submitter: INSTITUTE OF URBAN ENVIRONMENT CAS


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: Parvicellaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: Penn State University


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC059651

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Quaid-i-Azam University Islamabad Pakistan


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Shigella flexneri

ncbi_submitter: King's College London


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3865

ncbi_submitter: University of Queensland


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus tropicus

ncbi_submitter: BGI


ncbi_organism_name: Fictibacillus barbaricus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Brevundimonas sp.


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Terriglobales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11714

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Anhui

ncbi_isolation_source: China: Anhui

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: NORHED grant


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Queensland; Lake Wivenhoe

ncbi_isolation_source: freshwater

ncbi_organism_name: Cylindrospermopsis raciborskii C04

ncbi_submitter: Griffith University


ncbi_country: China: Beijing

ncbi_isolation_source: pork

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: patients

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_country: China

ncbi_isolation_source: fecal sample

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_organism_name: Pseudofrancisella aestuarii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_country: China: Haerbin

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: CAU


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Alkalimonas cellulosilytica

ncbi_submitter: National Centre For Cell Science (NCCS)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Butyricicoccus pullicaecorum

ncbi_submitter: EMG


ncbi_submitter: Agricultural Research Service


ncbi_country: Russia: Lake Baikal

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-5330

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Ghana

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_assembly_name: Rhizobiales bacterium Ga0077524

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Rhizobiales bacterium Ga0077524

ncbi_submitter: University of Glasgow


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: PatientM

ncbi_submitter: California Department of Public Health


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC078A08

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Brazil: Tatui

ncbi_isolation_source: Cecum and rectal contents from Capybaras

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Brazilian Center for Research in Energy and Materials (CNPEM)


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Legionellales bacterium UBA6786

ncbi_submitter: University of Queensland


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter fetus subsp. venerealis

ncbi_submitter: Utrecht University


ncbi_country: Ireland

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_country: Bulgaria

ncbi_isolation_source: feces

ncbi_organism_name: Ligilactobacillus acidipiscis

ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Leptospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Avibacterium avium

ncbi_strain_identifiers: SCPM-O-B-12887 (Nerechta)

ncbi_submitter: SRCAMB


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium ferriphilum


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: PA

ncbi_isolation_source: feces white-tailed deer (Odocoileus virginianus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Puyang

ncbi_isolation_source: Bark canker

ncbi_organism_name: Acinetobacter populi

ncbi_submitter: National Institute of Public Health


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Heleen Ouboter


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Jiangnan University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Limivivens intestinipullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Limivivens;s__Candidatus Limivivens intestinipullorum


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Secretion of sternum incision

ncbi_submitter: Instituto de Quimica


ncbi_country: China

ncbi_submitter: Swansea University


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptococcus parasuis


ncbi_country: Benin

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Kingella denitrificans


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: South Korea

ncbi_isolation_source: envrionmental

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Sanigen


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of New South Wales


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia sp. AU28942

ncbi_submitter: University of Michigan


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Dyella sp.

ncbi_submitter: University of Sao Paulo


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: skin

ncbi_submitter: Center for Laboratory Medicine


ncbi_isolation_source: food additive Jamieson Probiotic 30 Billion

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8858

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Viridibacillus sp. FSL R5-0468

ncbi_submitter: Penn State


ncbi_assembly_name: IMG-taxon 2675903042 annotated assembly

ncbi_organism_name: Nitrosomonas sp. Nm33

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: South Korea: Halla Mountain; Jeju Island

ncbi_organism_name: Andreprevotia chitinilytica DSM 18519

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: India: Karnataka

ncbi_isolation_source: Cow milk

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: tap

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu Natal


ncbi_assembly_name: Rumen uncultured genome RUG11654

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea: Bundang

ncbi_isolation_source: adult feces

ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Korea Food Research Institute


ncbi_country: Taiwan

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Canicola;x__Leptospira interrogans serovar Canicola str. LT1962


ncbi_isolation_source: wound

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: BWH 29

ncbi_submitter: Broad Institute


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China: Zhejiang; Huzhou

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Mycolicibacterium septicum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Rumen uncultured genome RUG11105


ncbi_country: China: Shaanxi

ncbi_isolation_source: lab culture

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Northwest A & F University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Oregon State University


ncbi_country: South Korea

ncbi_organism_name: Corynebacterium faecium

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Massilia sp. erpn

ncbi_strain_identifiers: erpn

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: spleen

ncbi_organism_name: Bacillus tropicus

ncbi_submitter: National Pingtung University of Science and Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: US Food and Drug Administration


ncbi_country: Colombia: Valle del Cauca

ncbi_isolation_source: water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions 0.1 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_48_18


ncbi_organism_name: Nostoc sp. ChiSLP02

ncbi_submitter: LANGEBIO


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: The University of Wisconsin-Madison

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: BCO Bacterial Genomes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;x__Staphylococcus cohnii species complex;x__unclassified Staphylococcus cohnii species complex;s__Staphylococcus cohnii species complex 1659


ncbi_assembly_name: IMG-taxon 2617270933 annotated assembly

ncbi_organism_name: Halomonas saccharevitans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Enteractinococcus sp.

ncbi_submitter: Fudan University


ncbi_organism_name: Pseudomonas sp. MH9.2

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: HUNSC


ncbi_isolate: DIVDIV

ncbi_organism_name: Candidatus Thiodiazotropha sp. DIVDIV

ncbi_strain_identifiers: DIVDIV

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;x__unclassified Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. DIVDIV


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides stercoris


ncbi_country: Cameroon: Ekona

ncbi_isolation_source: Red cocoyam rhizosphere

ncbi_organism_name: Pseudomonas ekonensis

ncbi_submitter: KU Leuven


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: EPFL


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom:Northern Ireland

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Treponema sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Australia: VIC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The University of Melbourne


ncbi_country: USA: CT

ncbi_isolation_source: regular butter

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mine

ncbi_organism_name: Bosea sp. AS-1

ncbi_submitter: China University of Geosciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. AS-1


ncbi_organism_name: Lysinibacillus sp. FSL R5-0849

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Lysinibacillus;x__unclassified Lysinibacillus;s__Lysinibacillus sp. FSL R5-0849


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Microbiology and Infectious Diseases, Toho University School of Medicine


ncbi_country: China: Heilongjiang

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: water column oxic-anoxic transition zone

ncbi_organism_name: Mariprofundus ferrinatatus

ncbi_submitter: University of Delaware


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Denmark: Viborg

ncbi_isolation_source: activated sludge from Vibo_18-Q3-R45-57

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Aalborg University


ncbi_assembly_name: Rumen uncultured genome RUG10627

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_organism_name: Ruminococcus sp. 1001136sp1

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Yellow Sea and East China Sea

ncbi_isolation_source: soil sediment

ncbi_organism_name: Exiguobacterium sp. s5

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s5


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces cellostaticus

ncbi_submitter: Bielefeld University


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Picosynechococcus sp. PCC 7002

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Borreliella garinii

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Escherichia coli

ncbi_submitter: United Kingdom Health Security Agency


ncbi_isolation_source: DHS Bioreactor

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Water Quality Control Lab, Division of Environmental Engineering, Faculty of Engineering, Hokkaido University


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Caulobacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: IMG-taxon 2693430036 annotated assembly

ncbi_organism_name: Polaribacter dokdonensis DSW-5

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Helicobacter ganmani


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: bacterium


ncbi_submitter: University of Surrey


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Edaphovirga cremea

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Odoribacter splanchnicus


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Agathobacter rectalis


ncbi_submitter: University Hospital Basel


ncbi_organism_name: Adlercreutzia sp.


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.0 m chemocline layer of meromictic lake

ncbi_submitter: Academia Sinica


ncbi_isolation_source: gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Pacearchaeota archaeon

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;x__Candidatus Pacearchaeota;x__unclassified Candidatus Pacearchaeota;s__Candidatus Pacearchaeota archaeon


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Qingdao Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: China: Bohai Sea

ncbi_isolation_source: 0-2 cm sediment from station M8 in the Bohai Sea

ncbi_organism_name: Fimbriimonadia bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Deferribacteraceae bacterium


ncbi_country: China: Tibet

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Rheinheimera marina

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Qinghai

ncbi_organism_name: Corynebacterium sp. sy039

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Dashan Tin-Zinc Mine; Guangxi Province

ncbi_organism_name: Actinomycetes bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tongji University


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: skin pus

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_submitter: University of Massachusetts Amherst


ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Selenomonadaceae bacterium


ncbi_country: Canada: Quebec

ncbi_organism_name: Serratia marcescens

ncbi_submitter: INRS


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Yangzhou; Jiangsu

ncbi_isolation_source: commercial canine company

ncbi_organism_name: Ehrlichia canis

ncbi_submitter: Yangzhou University


ncbi_assembly_name: Rumen uncultured genome RUG11045

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Robiginitalea sp.

ncbi_submitter: Georgia Tech


ncbi_organism_name: Paracholeplasma sp.

ncbi_submitter: University of Waterloo


ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: collective feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_assembly_name: freshwater MAG --- MJ130617B_bin-103

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Eisenbergiella tayi

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Poland: Warszawa

ncbi_isolation_source: urine

ncbi_organism_name: Providencia stuartii

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Broad Institute


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Afipia sp. TMED4

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA1005

ncbi_submitter: University of Queensland


ncbi_country: USA: PA

ncbi_isolation_source: avian heart (Gallus gallus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Japan

ncbi_isolation_source: feces


ncbi_country: Canada: Bonnybrook

ncbi_isolation_source: wastewater

ncbi_submitter: University of Alberta


ncbi_isolation_source: Caecum

ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Bartonella machadoae

ncbi_submitter: School of Agricultural and Veterinarian Sciences (FCAV)


ncbi_organism_name: Helicobacter japonicus


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Brazil: Dourados

ncbi_organism_name: Fibrobacterota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Kluyvera cryocrescens

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Filifactor alocis


ncbi_country: China: Tibet

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Rainer Borriss's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Mycobacterium mantenii

ncbi_submitter: San Raffaele Scientific Institute


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolate: metabat2_6732_HOM_VAC_hybrid.196 MAG

ncbi_strain_identifiers: metabat2_6732_HOM_VAC_hybrid.196 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Greece: Epirus

ncbi_isolation_source: artisanal Greek Feta cheese

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Escherichia coli O176:H45

ncbi_submitter: Medical University of Bialystok


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: University of Sheffield


ncbi_country: Ukraine

ncbi_isolation_source: Ukraine

ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: University of Otago


ncbi_country: Norway

ncbi_organism_name: Psychromonas arctica DSM 14288

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Rickettsia peacockii str. Rustic

ncbi_strain_identifiers: Rustic

ncbi_submitter: U of MN Entomology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia peacockii;x__Rickettsia peacockii str. Rustic


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: uncultured Lishizhenia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Fujian

ncbi_organism_name: Bacillus sp. FJAT-29937

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-29937


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: University of British Columbia


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California; Eel River; Red Mountain Creek

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_32_RDM_D_A

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T72889

ncbi_submitter: Broad Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 19ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium RBG_19FT_COMBO_34_6


ncbi_country: Italy: Minoprio Foundation

ncbi_isolation_source: roots

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Universita degli Studi di Milano

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: laboratory contaminant

ncbi_organism_name: Staphylococcus warneri SG1

ncbi_submitter: University of Alberta