ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_level: Scaffold

ncbi_strain_identifiers: LT2 KO STM1869A

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_level: Contig

ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: sichuan university


gtdb_representative: t

ncbi_assembly_name: LFA

ncbi_organism_name: Legionella fallonii LLAP-10

ncbi_refseq_category: reference genome

ncbi_submitter: INSTITUT PASTEUR

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_country: Japan

ncbi_isolation_source: not applicable

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Joint Faculty of Veterinary Medicine, Yamaguchi University


ncbi_country: Costa Rica

ncbi_isolation_source: xylem

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: UC Davis


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: Mexico: Morelos

ncbi_isolation_source: nodules

ncbi_organism_name: Microvirga sp. VF16

ncbi_submitter: Universidad Autonoma del Estado de Morelos


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


gtdb_type_species_of_genus: t

ncbi_organism_name: Paenalcaligenes hominis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Thauera sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Isolate 17

ncbi_submitter: University of Siena


ncbi_isolation_source: cold seep

ncbi_organism_name: Mycolicibacterium sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: United Kingdom: Aberystwyth

ncbi_isolation_source: throat

ncbi_organism_name: Fusobacterium necrophorum

ncbi_submitter: Cardiff Metropolitan University


ncbi_assembly_name: freshwater MAG --- Loc090116-4m_bin-0152

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ireland: Cork

ncbi_isolation_source: toe web-space skin

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: APC Microbiome Ireland


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Barnesiella viscericola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: environmental

ncbi_organism_name: Pseudomonas aeruginosa C48

ncbi_submitter: Broad Institute


ncbi_isolation_source: burned soil

ncbi_organism_name: Devosia sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Rhodobacter capsulatus

ncbi_submitter: University of York


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_level: Chromosome

ncbi_organism_name: Salinilacustrithrix flava

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Roizmanbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;x__unclassified Candidatus Roizmanbacteria;s__Candidatus Roizmanbacteria bacterium


ncbi_country: North Sea

ncbi_isolation_source: coastal sea water column HE361-02 at a depth of 3m

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Slovenia

ncbi_isolation_source: cecal contents

ncbi_organism_name: Campylobacter magnus

ncbi_submitter: Veterinary Faculty


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_assembly_name: IMG-taxon 2675903007 annotated assembly

ncbi_organism_name: Marisediminitalea aggregata

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Bacteroides sp. 3_1_33FAA


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Edinburgh


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: Romania

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis 2092HD

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycobacteroides abscessus 3A-0731

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from transplant house

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: South Korea: Seocheon-gun

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Seoul National University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Halifax

ncbi_isolation_source: CSF

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 4b;x__Listeria monocytogenes serotype 4b str. 81-0558


ncbi_country: Canada: Toronto

ncbi_submitter: University of Toronto


ncbi_country: Russia: Moscow

ncbi_isolation_source: BAL (bronchoalveolar lavage)

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 16553_3


ncbi_country: Canada

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: JCVI


ncbi_assembly_name: freshwater MAG --- B2_bin-0169

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University Microbial Pathogenomics Lab


ncbi_submitter: MRSN BI Team


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Schaalia hyovaginalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: gut

ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: University of Toronto


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: Bielefeld University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Croatia

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Croatian Veterinary Institute


ncbi_country: Brazil

ncbi_isolation_source: orange tree

ncbi_organism_name: Xylella fastidiosa subsp. pauca 11399

ncbi_submitter: IAC - Centro de citricultura

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xylella;s__Xylella fastidiosa;sb__Xylella fastidiosa subsp. pauca;x__Xylella fastidiosa subsp. pauca 11399


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Chung-Ang university


ncbi_country: Viet Nam: Quang Ninh

ncbi_isolation_source: Mangrove plant

ncbi_organism_name: Streptomyces parvulus

ncbi_submitter: Institute of Biotechnology, Vietnam Academy of Science and Technology (VAST)


ncbi_country: Brazil: Anavilhanas; AM

ncbi_isolation_source: Atta laevigata fungus garden

ncbi_organism_name: Candidatus Pantoea communis

ncbi_submitter: UW-Madison


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Aerococcus tenax

ncbi_submitter: Loyola University Chicago


ncbi_country: Thailand: Ratchaburi

ncbi_isolation_source: natural water sources close by farm or community

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Chulalongkorn University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Wallbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Walliibacteriota;x__unclassified Candidatus Wallbacteria;s__Candidatus Wallbacteria bacterium


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium simiarum

ncbi_submitter: University of Parma


ncbi_country: Singapore

ncbi_isolation_source: milk powder

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_organism_name: Tannerella forsythia

ncbi_submitter: Yunnan Agricultural University


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_isolation_source: Cystic fibrosis patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: IA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Rumen uncultured genome RUG12583

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Halalkalibacter alkalisediminis

ncbi_strain_identifiers: NCAIM B.02301

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Desulfovirgula sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Florida


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Enteromonas sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Alloenteromonas;x__unclassified Candidatus Enteromonas;s__Candidatus Enteromonas sp.


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Brevundimonas sp. NPDC007353


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Serratia nematodiphila


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterobacter cloacae complex sp. 280C5

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 280C5


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Entotheonellaceae bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Tectimicrobiota;c__Candidatus Entotheonellia;o__Candidatus Entotheonellales;f__Candidatus Entotheonellaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Candidatus Tectimicrobiota;c__Candidatus Entotheonellia;o__Candidatus Entotheonellales;f__Candidatus Entotheonellaceae;x__unclassified Candidatus Entotheonellaceae;s__Candidatus Entotheonellaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Bacillus cereus group sp. BceL023

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL023


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GNS Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: University of Chicago


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Lilbub from private home

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: AnimalBiome


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Anaerobutyricum soehngenii


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: raw meat-based diets for companion animals

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Xanthomarina sp.


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: IBB PAS


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Queensland


ncbi_country: South Korea

ncbi_isolation_source: Artificial pond

ncbi_organism_name: Piscinibacter sp. HJYY11

ncbi_submitter: Dongguk university


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Pediococcus acidilactici


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium intracellulare 1956

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;x__Mycobacterium intracellulare 1956


ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Mangrovibacterium sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Belgium

ncbi_isolation_source: leaves

ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: Hasselt University


ncbi_organism_name: Flavipsychrobacter sp.

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_assembly_name: Isolate 18

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kalmar county hospital


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas sp. WS 5011

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Flavobacterium sp.


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Slovakia

ncbi_isolation_source: urine


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: Washington

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Nigeria: Lagos; Eleko Beach

ncbi_isolation_source: dry sand

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ GmbH


ncbi_country: China: Beijing

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; pilot scale (60m3) reactor for the removal of ammonium from the effluent from a primary clarifier of a full-scale WWTP.

ncbi_organism_name: Nitrosomonas eutropha

ncbi_submitter: University of Queensland


ncbi_organism_name: Stenotrophomonas indicatrix


ncbi_assembly_name: Bifsub

ncbi_isolation_source: Sewage

ncbi_organism_name: Bifidobacterium subtile

ncbi_submitter: University of Parma


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 10067B

ncbi_submitter: University of Exeter


ncbi_organism_name: Pseudolabrys sp.


ncbi_country: Serbia

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Delftia tsuruhatensis

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: Portugal

ncbi_isolation_source: bovine udder

ncbi_organism_name: Streptococcus dysgalactiae


ncbi_country: Italy: Avezzano

ncbi_isolation_source: feces

ncbi_submitter: IZSAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Egypt: Cairo

ncbi_organism_name: Staphylococcus sp. EG-SA-10

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_submitter: Shenzhen People's Hospital


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic 4,5,12:i:-


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: Artificial municipal wastewater treatment

ncbi_organism_name: Gammaproteobacteria bacterium PRO2

ncbi_submitter: Peking University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprobacillus sp.

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: vinegar

ncbi_organism_name: Komagataeibacter saccharivorans

ncbi_submitter: National Institute of Agricultural Science


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Borreliella afzelii

ncbi_strain_identifiers: PKL

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_country: China: Guangzhou

ncbi_isolation_source: fishpond water

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_submitter: University of Zurich


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: IMG-taxon 2615840720 annotated assembly

ncbi_organism_name: Paracoccus aminovorans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: DTU Bioinformatics


ncbi_country: Netherlands

ncbi_strain_identifiers: STEC 477

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: China: Chongqing

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: Paenibacillus durus ATCC 35681

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus durus;x__Paenibacillus durus ATCC 35681

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Australia

ncbi_isolation_source: Gastric Antrum

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter pylori;x__Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: chicken meat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Laboratory for Foodborne Zoonoses


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV068

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_submitter: Texas Tech University


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Malaysia

ncbi_isolation_source: Plant

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: USA

ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AGROSAVIA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Armpit

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Streptomyces sp. NPDC001787

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhodococcus coprophilus


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: sepsis

ncbi_submitter: URMC


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: Indian Ocean

ncbi_isolation_source: Indian Monsoon Gyres Province

ncbi_organism_name: Methylophaga sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: South Korea

ncbi_isolation_source: alkaline soil

ncbi_organism_name: Paenibacillus alkaliterrae

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 628418

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhengzhou University


ncbi_submitter: Los Angeles County Public Health Laboratory


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Paucimonas lemoignei

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: China: Yandang mountain

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. CB02980

ncbi_submitter: Xiangya International Academy of Translational Medicine


ncbi_organism_name: Escherichia coli O26

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1011

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B2(2017)

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: GA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_organism_name: Faecalibacterium sp. OF04-11AC

ncbi_submitter: BGI


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Hong Kong: Telegraph Bay

ncbi_isolation_source: polyester fabric recovered from compost

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: KSC 591

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: uncultured Veillonella sp.


ncbi_organism_name: Pseudomonas sp. NPDC089554

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: IN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Salmonella sp. M183

ncbi_submitter: Zhejiang University


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Afghanistan

ncbi_isolation_source: stray dog fecal sample

ncbi_organism_name: Pseudomonas sp. AFG_SD02_1510_Pfu_092

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: Sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Czech Republic

ncbi_isolation_source: liver

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human stool

ncbi_organism_name: Lactobacillaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: Manoa Valley; Honolulu; Hawaii

ncbi_isolation_source: moss bank soil

ncbi_organism_name: Brasilonema angustatum HA4187-MV1

ncbi_submitter: University of California, Riverside

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Scytonemataceae;g__Brasilonema;x__Bromeliae group (in: Brasilonema);s__Brasilonema angustatum;x__Brasilonema angustatum HA4187-MV1


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho university


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agricultural University


ncbi_country: USA

ncbi_isolation_source: Stream water

ncbi_organism_name: Pseudomonas syringae USA007

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae USA007


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Kitasatospora sp. NPDC085879


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Hominifimenecus microfluidus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: New Caledonia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira harrisiae

ncbi_submitter: Institut Pasteur Montevideo


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Colwellia sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG11133

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Guangdong

ncbi_organism_name: Pseudomonas sp. B7

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium HGW-Deltaproteobacteria-4


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_organism_name: Enterococcus faecalis


ncbi_country: China: Chengdu

ncbi_isolation_source: liver abscess

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Mycoplasmopsis synoviae GX11-T

ncbi_submitter: Huazhong Agriculture University


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_isolation_source: faecal

ncbi_submitter: SC


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Anaerobacillus sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Pasteurella;s__Pasteurella multocida;sb__Pasteurella multocida subsp. gallicida;x__Pasteurella multocida subsp. gallicida X73


ncbi_country: Chad

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 63041

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Mexico: Milpa Alta; CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Chitinophaga sp.

ncbi_submitter: UNESP-FCAV


ncbi_assembly_name: freshwater MAG --- Umea2_bin-2253

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G.Caporale"


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: UMR 1253, INRA/Agrocampus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Vibrio anguillarum


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Universidade Federal do Rio de Janeiro

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Fibrobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: Blastocatellia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: uncultured Desulfobulbia bacterium


ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antwerp


ncbi_organism_name: Roseicyclus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Guangxi Medical University


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Streptomyces erythrochromogenes


ncbi_organism_name: Bacillus cereus group sp. BceL179

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL179


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-2077

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. 12-68-7


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: EMG


ncbi_country: China: Jilin

ncbi_organism_name: Gilliamella sp. B14384G13

ncbi_submitter: China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG198

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_organism_name: Bacillus cereus group sp. BceL113

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL113


ncbi_country: Mauritius

ncbi_isolation_source: Citrus leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: cirad

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: Colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: USA

ncbi_strain_identifiers: ISU 871

ncbi_submitter: USDA-ARS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-4 day 763

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The Ohio State University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: drainage fluid

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_submitter: Colorado State University


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Parabacteroides chartae

ncbi_submitter: Nanyang Technological University


ncbi_country: Australia: Tasmania

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_country: Australia: Magnetic Island; QLD

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Ignavibacterium album

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Chlamydiae bacterium GWC2_50_10

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiae bacterium GWC2_50_10


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: EMG


ncbi_isolation_source: Urology Surgery

ncbi_submitter: Guangzhou Medical University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Dysosmobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Shewanella algae

ncbi_submitter: Toho University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter soli


ncbi_isolation_source: not provided

ncbi_organism_name: Porphyromonas gingivalis


ncbi_assembly_name: Rumen uncultured genome RUG10857

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Puerto Rico: Maunabo

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Georgia: Marneuli

ncbi_isolation_source: milk

ncbi_organism_name: Brucella abortus

ncbi_submitter: NCDC


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Alachua

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: South Korea: Shrimp farms

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jeonbuk National University


ncbi_country: Ecuador

ncbi_isolation_source: clinical

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Alloprevotella sp.

ncbi_submitter: EMG


ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: India: West Bengal

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium sp. WBAH41

ncbi_submitter: University of calcutta


ncbi_organism_name: Sphingopyxis sp. CCNWLW2

ncbi_submitter: Northwest A&F University


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Insytitute of microbiology and epidemiology


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Bacteroidales bacterium UBA1769

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1769


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis ERV85

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcaceae bacterium AF54-32pH5A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Streptococcus gallolyticus

ncbi_submitter: University of Auckland


ncbi_country: Russia: Moscow Region; Pushino

ncbi_isolation_source: forest soil

ncbi_organism_name: Methylocystis silviterrae

ncbi_strain_identifiers: FS

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Italy

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Dahi fermented milk product

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Quaid-I-Azam University


ncbi_country: China: the East China Sea

ncbi_isolation_source: enrichment culture inoculated with surface estuarine sediment

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Shanghai Jiao Tong University (SJTU)


ncbi_country: Germany: Zingster Strom

ncbi_isolation_source: Cyanobium sp. CZS 25K enrichment culture from brackish water

ncbi_organism_name: Blastomonas sp.

ncbi_submitter: Mount Allison University


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Treponema denticola

ncbi_submitter: EMG


ncbi_country: China: Tianjin

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: the seqafrica consortium


ncbi_country: China

ncbi_isolation_source: environmental swabs

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Oklahoma

ncbi_isolation_source: Plant Leaf Surface

ncbi_organism_name: Arthrobacter sp. Edens01

ncbi_submitter: Oklahoma State Universtiy


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hangzhou Medical University


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli O157:H7 str. EC10

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. EC10


ncbi_organism_name: Serratia marcescens

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Treponema sp.

ncbi_submitter: McGill University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Fibrobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: France: Paris

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_country: China: Sichuan

ncbi_isolation_source: sewage from chicken farm

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_assembly_name: INIA P572

ncbi_isolate: INIA P572

ncbi_isolation_source: pork faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_strain_identifiers: INIA P572

ncbi_submitter: UVEG


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_submitter: United Kingdom Health Security Agency


ncbi_country: Brazil: Recife

ncbi_submitter: Aggeu Magalhaes Institute


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W15974

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lachnospiraceae bacterium AC2031

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Mesorhizobium sp. LNJC374B00

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: tracheal secretion

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dysosmobacter sp.


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Seoul National University


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Snowella sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: conjugation assay

ncbi_submitter: Shanghai Jiao Tong University School of Medicine


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ABFQP

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Actinomyces viscosus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Longilinea sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Cloacibacillus evryensis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Yantai University


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_country: Russia: Ekaterinburg

ncbi_isolation_source: lungs

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences


ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Kasetsart University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Italy

ncbi_isolation_source: oropharyngeal swab

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Streptomyces eurythermus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_assembly_name: EAV_NNN508 complete genome sequence

ncbi_country: Viet Nam

ncbi_isolation_source: sputum

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: university of science and technology of hanoi (usth)


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: Artificial pond

ncbi_organism_name: Aquariibacter lacus

ncbi_submitter: Dongguk university


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Medical Center Goettingen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Chongqing

ncbi_isolation_source: Drainage

ncbi_organism_name: Enterobacter cloacae complex sp. ECL404

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. ECL404


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1188

ncbi_submitter: Broad Institute


ncbi_country: China: Tongling; Anhui Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Fictibacillus enclensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Paenibacillaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: France: Levallois

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_isolation_source: raw meat-based diets for companion animals


ncbi_country: Turkey

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_organism_name: Soonwooa sp.


ncbi_isolation_source: Breast milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Atopobiaceae bacterium AF58-11pH5A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_submitter: University of Zurich, Vetsuisse Faculty


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Streptomyces cinereoruber

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: Pediatrics Bacteriology, Kyushu univercity


ncbi_organism_name: Streptomyces sp. CY1

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Alistipes onderdonkii


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Iowa State University


ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Arcobacter sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Candidatus Spongiisociaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Maricaulis sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Waterloo


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Distal colon

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Tissue Right Shoulder COLLAR MEMBRANE

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_isolation_source: blood of a naturally infected pig

ncbi_organism_name: Mycoplasma parvum str. Indiana

ncbi_strain_identifiers: Indiana

ncbi_submitter: Purdue University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Micromonospora sp. B11E3

ncbi_submitter: Ondokuz Mayis university


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_country: USA: OR

ncbi_isolation_source: sample collected from honey bee larvae displaying clinical signs of European Foulbrood Disease within a brood chamber in a bee hive

ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_isolation_source: gut

ncbi_organism_name: Candidatus Avelusimicrobium stercoris

ncbi_submitter: University of Queensland


ncbi_organism_name: Paenibacillus sp. S29

ncbi_submitter: University of Tehran


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Paenibacillus sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: human stool

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Boston

ncbi_isolation_source: stool

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_assembly_name: Rumen uncultured genome RUG10264

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Yantai

ncbi_isolation_source: blood

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Germany: Erfurt

ncbi_isolation_source: Captive animal

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: South Carolina

ncbi_isolation_source: pharyngeal mucosa

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas simiae

ncbi_submitter: Wenzhou Medical University


ncbi_organism_name: Dehalogenimonas sp. 4OHTPN

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China

ncbi_isolation_source: chicken carcass

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_organism_name: Serratia marcescens

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: University of Chicago


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universidade Santo Amaro


ncbi_organism_name: Corynebacterium variabile

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Belarus: Gomel

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 144_1


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Kitchen E

ncbi_organism_name: Weissella minor

ncbi_submitter: Cornell University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. UBA6357

ncbi_submitter: University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: soil

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: Belgium

ncbi_isolation_source: Catheter

ncbi_organism_name: Acinetobacter colistiniresistens

ncbi_strain_identifiers: NIPH 2036

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_country: Austria: Lower Austria; Krems

ncbi_isolation_source: rectal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_country: Germany

ncbi_isolation_source: acid lateritic relicts

ncbi_organism_name: Caballeronia glathei

ncbi_submitter: Laboratory of Biocatalysis and Synthetic Biotechnology


ncbi_isolation_source: poultry farm

ncbi_organism_name: Rhodococcus gordoniae

ncbi_submitter: Shandong First Medical University


ncbi_isolation_source: Proximal colon


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil: Sao Carlos

ncbi_isolation_source: blood

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Pseudomonas sp. W3I7

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan: Tokyo

ncbi_isolation_source: Surgical wound

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Toho University School of Medicine


ncbi_organism_name: Bacillus cereus group sp. MYBK56-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK56-1


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_organism_name: Mycoavidus cysteinexigens

ncbi_submitter: Oregon State


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Copenhagen


ncbi_country: Canada: Ontario

ncbi_isolation_source: ANIMAL-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120918


ncbi_country: Russia: Elista

ncbi_isolation_source: river water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russian Research Anti-plague Institute "Microbe"


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: Norway

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ANIWHA


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Lysobacter sp. Root983

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: Anal swab

ncbi_submitter: SurvCARE


ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Sodaliphilus pleomorphus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Neisseria sp. HMSC078H04

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_submitter: Sun Yat-sen University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolate: CB2 bin18

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: CB2 bin18

ncbi_submitter: China Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Nonomuraea soli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Michigan

ncbi_organism_name: Pseudomonas sp. PvP028

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: India:New Delhi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: All India Institute of Medical Sciences


ncbi_country: USA: Massachusetts

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Metamycoplasma equirhinis

ncbi_submitter: LABEO


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Xylophilus ampelinus

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_organism_name: Neglectibacter sp. X58

ncbi_submitter: Chinese Academy of Science


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Anaerococcus sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Italy: Treviso

ncbi_isolation_source: rectal swab

ncbi_submitter: Istituto Superiori di Sanita


ncbi_country: USA: FL

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: JCVI


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: China: Wuhan

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_organism_name: Bacteroides sp. AN502(2024)

ncbi_submitter: University of Alaska Anchorage


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Metallibacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Shanghai Institutes for Biological Sciences (SIBS) of Chinese Academy of Sciences (CAS)


ncbi_country: USA: Ohio

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Poland: Elblag

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Methylobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Bangladesh

ncbi_isolation_source: Citrus sp.

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: HeBei

ncbi_isolation_source: Pleural Effusion

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPLOWO2_02_FULL_42_17


ncbi_organism_name: Deinococcus daejeonensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: USA: Albany CA

ncbi_isolation_source: Exudate from chicken breast purchased at a retail location

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: USDA-Agricultural Research Service-Eastern Regional Research Center


ncbi_organism_name: Streptomyces lancefieldiae

ncbi_submitter: Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_country: China

ncbi_isolation_source: Neoplasm

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Pediococcus pentosaceus SL4

ncbi_submitter: The Technical University of Denmark


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: University of Queensland


ncbi_country: Colombia

ncbi_isolation_source: Gastrointestinal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Methylococcales bacterium


ncbi_country: USA: WI; Brown

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Leuconostoc sp. UBA4400


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Teagasc


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotellaceae bacterium UBA2736


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Polyangiaceae bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_organism_name: Streptomyces griseoluteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Salmonella enterica subsp. enterica


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom: Plymouth Sound

ncbi_isolation_source: Seawater

ncbi_organism_name: Bacillus sp. BHET2

ncbi_submitter: University of Warwick

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BHET2


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: uncultured Limnohabitans sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_strain_identifiers: Os S e5

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Streptomyces sp. Pv4-95

ncbi_submitter: Explogen LLC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe