ncbi_organism_name: uncultured Pusillimonas sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Photobacterium profundum

ncbi_submitter: Universidade Federal do Rio de Janeiro


gtdb_representative: t

gtdb_type_species_of_genus: t

ncbi_organism_name: Xanthobacter autotrophicus

ncbi_submitter: Harvard Medical School

ncbi_type_material_designation: assembly from type material


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: UIUC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Actinomycetes bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Kazan Federal University


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_organism_name: Segatella copri


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Bacillus cereus group sp. Bce039

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bce039


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Brevibacillus formosus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_country: Hungary: Szeged wastewater treatment plant

ncbi_isolation_source: Anaerobic sludge from Szeged Municipal wastewater plant s biogas plant Biogas Plant

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Szeged

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_assembly_name: Rumen uncultured genome RUG11197

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Zhejiang

ncbi_organism_name: Acinetobacter sp. YH12123

ncbi_submitter: South China Agricultural University


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flammeovirgaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola plebeius


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_assembly_name: freshwater MAG --- Loclat_bin-13011

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Cytophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: China

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: China Agricultural University


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DTU


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolate: Caulobacteraceae sp. RBC028

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_strain_identifiers: Caulobacteraceae sp. RBC028

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: China: Weihai

ncbi_isolation_source: sediment from intertidal zone

ncbi_organism_name: Roseibacillus persicicus

ncbi_submitter: Shandong University


ncbi_country: USA: Carson; CA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: China: Suzhou

ncbi_isolation_source: feces

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: USA: Texas

ncbi_organism_name: Microbacterium proteolyticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France: Paris

ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: LMSM Lab ; Rouen University


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Peribacteraceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;x__unclassified Candidatus Peribacteraceae;s__Candidatus Peribacteraceae bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Microcoleus sp. w2-18aC6

ncbi_submitter: Palacky University Olomouc


ncbi_country: Spain: Oviedo

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Ec-HUCA 5

ncbi_submitter: Centro de Investigacion Biomedica de La Rioja


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: China: Hengyang

ncbi_isolation_source: Catheter head

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0306R

ncbi_submitter: Broad Institute


ncbi_assembly_level: Chromosome

ncbi_submitter: Fujian Provincial Hospital


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_organism_name: Klebsiella variicola


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: USA: WA

ncbi_organism_name: Rhodococcus sp. 05-2254-6

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 05-2254-6


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Kenya

ncbi_organism_name: Spirochaetales bacterium UBA6350

ncbi_submitter: University of Queensland


ncbi_organism_name: Sphingomonas elodea ATCC 31461

ncbi_refseq_category: reference genome

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: USA: Indiana; Mishawaka

ncbi_organism_name: Wolbachia pipientis

ncbi_submitter: BOKU


ncbi_organism_name: Maritimibacter sp.

ncbi_submitter: Georgia Tech


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Kiel University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_assembly_name: Rumen uncultured genome RUG11923

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_assembly_name: Rumen uncultured genome RUG14160

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: University of Chicago


ncbi_country: Germany

ncbi_organism_name: Streptobacillus moniliformis

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Candidatus Apopatosoma intestinale

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Apopatosoma;s__Candidatus Apopatosoma intestinale


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_50_16


ncbi_isolation_source: Food - mussel (final product)

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Pantoea brenneri


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: Industrial Effluent

ncbi_organism_name: Paracoccus sp. MKU1

ncbi_submitter: Madurai Kamaraj University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. MKU1


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: milk

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Max-Rubner Institut


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Pork Patties (after processing)

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPLOWO2_01_FULL_38_13


ncbi_country: China: Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Methylophilus sp. 13

ncbi_submitter: Nanjing Institute of Geography&Limnology Chinese Academy of Sciences


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Thailand:Tak; Hill evergreen forest

ncbi_isolation_source: Soil

ncbi_organism_name: Planobispora takensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_assembly_name: Rumen uncultured genome RUG10482

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Hubei

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Teagasc


ncbi_country: Argentina: Cordoba

ncbi_isolation_source: saline soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Universidad Nacional de Rio Cuarto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Leptospira interrogans serovar Canicola

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Dysgonomonas mossii

ncbi_submitter: EMG


ncbi_country: United Kingdom: England; London

ncbi_organism_name: Chryseobacterium sp. G0186

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: South Africa

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. 852002-50395_SCH5434458


ncbi_country: China: Henan;Keeqin

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: KLQ

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Ireland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_organism_name: Vreelandella massiliensis

ncbi_submitter: URMITE


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: USA: Sunnyside WA; Yakima county; farm #4

ncbi_isolation_source: dairy cow; adult

ncbi_organism_name: Campylobacter jejuni subsp. jejuni 1577

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 1577


ncbi_organism_name: uncultured Petrimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Taiwan: Taichung

ncbi_isolation_source: Pus

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China Medical University


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Hangzhou Medical University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Zafaria sp. J156

ncbi_submitter: Shanxi Medical University


ncbi_country: China: Hainan Province

ncbi_isolation_source: aquaculture base

ncbi_organism_name: Gilvimarinus xylanilyticus

ncbi_submitter: Shandong University


ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: AAFC


ncbi_organism_name: Leptospira interrogans serovar Bataviae

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Thailand

ncbi_isolation_source: Chili Powder

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000206


ncbi_organism_name: Zhongshania borealis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: India: Kodungallur; Kerala

ncbi_isolation_source: shrimp

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Indian Institute of Technology Delhi


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: wound

ncbi_submitter: Chalmers University of Technology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Emticicia sp. ODNR4P

ncbi_submitter: University of Toledo


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Finland: Panacea; Halichondria boweranki

ncbi_isolation_source: marine sponge

ncbi_organism_name: Mycolicibacterium poriferae

ncbi_submitter: Uppsala University


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: China: Jiangsu

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University


ncbi_country: Bangladesh

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: Arctic Ocean

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Celeribacter baekdonensis B30

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Durham; NC

ncbi_isolation_source: Synovial fluid

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Duke University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Brandenburg


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Florida

ncbi_isolation_source: blue hole oxygen minimum zone seawater 60 m

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: France

ncbi_isolation_source: 41 year old male suffering from gastric MALT lymphoma

ncbi_organism_name: Helicobacter pylori B45

ncbi_submitter: Karolinska Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Lachnospirales bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Leptolyngbya sp. FACHB-321

ncbi_submitter: South China Normal University


ncbi_isolation_source: nasal

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_country: United Kingdom: Scotland; Raigmore Hospital; Inverness

ncbi_isolation_source: cystic fibrosis patient

ncbi_submitter: University of Aberdeen


ncbi_country: Ireland

ncbi_isolation_source: Environment (waste water)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 46.E.09


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T76030

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA

ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: Russia: Arkhangelsk

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_isolate: Reference

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: Reference

ncbi_submitter: dtu national food institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Frisingicoccus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptomyces sp. NPDC090057

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: feces

ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Campylobacter fetus

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shenzhen

ncbi_organism_name: Fusobacterium mortiferum

ncbi_submitter: BGI


ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_country: USA: Georgia

ncbi_isolation_source: week A6 calf 159 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_country: India: Uttar Pradesh; Varanasi; Naipura Khurd

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx


ncbi_country: Iran: Tehran

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Pasteur Institute of Iran


ncbi_isolation_source: marine metagenome


ncbi_isolate: VU-WI

ncbi_isolation_source: Puturosu Mountain; Romania

ncbi_strain_identifiers: VU-WI

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Laboratorios veterinarios Lasser


ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Streptomyces iakyrus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Sphingomonadaceae bacterium


ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Os L e4

ncbi_submitter: CEITEC VETUNI


ncbi_submitter: Goethe University Frankfurt


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Ruminococcus sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Zhejiang university


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Enterococcus sp. MSG3285

ncbi_submitter: Broad Institute


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Tucson; AZ

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Beside Boulder

ncbi_submitter: University of Duisburg-Essen


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands: River Waal

ncbi_isolation_source: riparian wetland soil

ncbi_organism_name: Methylomonas sp. LL1

ncbi_submitter: ESF, EUROCORES, NWO


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_assembly_name: Rumen uncultured genome RUG12636

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: GS De Novo Assembly

ncbi_country: India

ncbi_isolation_source: Loktak Lake

ncbi_organism_name: Pseudogulbenkiania ferrooxidans EGD-HP2

ncbi_submitter: National Environmental Engineering Research Institute-CSIR


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaerovibrio sp.


ncbi_country: Antarctica

ncbi_organism_name: Jeotgalicoccus sp. WY2


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Delhi

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Delhi


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Japan

ncbi_isolation_source: Splinter of wood around the prune tree

ncbi_organism_name: Lentzea sp. NBRC 102530

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: Proximal colon


ncbi_submitter: EMG


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Maryland


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_assembly_name: IMG-taxon 2693429882 annotated assembly

ncbi_organism_name: Pedobacter hartonius

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Greece

ncbi_organism_name: Pseudomonas amygdali

ncbi_strain_identifiers: CFBP 3205

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali


ncbi_assembly_name: freshwater MAG --- Loc090116-9m_bin-1417

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: France: Paris

ncbi_submitter: inserm


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: swine carcass composts

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. MPR-ANB1

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Weissella confusa

ncbi_submitter: BGI-Shenzhen


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Achromobacter denitrificans

ncbi_submitter: US Food and Drug Administration


ncbi_country: Iran: (Islamic Republic of) Babol; Mazandaran

ncbi_organism_name: Pseudomonas marginalis pv. marginalis

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas fluorescens group;s__Pseudomonas marginalis;x__Pseudomonas marginalis pv. marginalis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Planctomicrobium piriforme

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonas aeruginosa LESlike1

ncbi_submitter: IBIS, University Laval


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chicago


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: South China University of Technology


ncbi_country: Spain

ncbi_submitter: Hospital 12 de Octubre


ncbi_assembly_name: freshwater MAG --- C24_bin-1043

ncbi_isolation_source: pond

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Campylobacter hyointestinalis

ncbi_submitter: EMG


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Thailand: Trang

ncbi_isolation_source: food

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Treponema sp. UBA7863

ncbi_submitter: University of Queensland


ncbi_country: USA: California

ncbi_isolation_source: walnut

ncbi_organism_name: Brenneria rubrifaciens

ncbi_submitter: USDA-ARS


ncbi_country: USA: San Francisco; CA

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Texas A&M University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_55_24


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: water

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Poland: Kutno

ncbi_isolation_source: skin lesion

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Shandong

ncbi_isolation_source: Retail pork

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: uncultured Croceitalea sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New York; New York City

ncbi_organism_name: Clostridium perfringens D

ncbi_submitter: University of Glasgow


ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_isolation_source: Homo sapiens

ncbi_organism_name: Escherichia coli

ncbi_submitter: U.S. Food and Drug Administration


ncbi_organism_name: Methylobacterium jeotgali

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: tracheae; air sacs; and pericardial regions from turkey embryos

ncbi_organism_name: Malacoplasma iowae DK-CPA

ncbi_strain_identifiers: DK-CPA

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: USA: Rochester; MN

ncbi_organism_name: Yersinia rochesterensis

ncbi_strain_identifiers: ATCC BAA-2637

ncbi_submitter: Mayo Clinic


ncbi_isolation_source: Caecum

ncbi_organism_name: Acutalibacter muris


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF15-49

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Microlunatus kandeliicorticis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Geoalkalibacter sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Oscillibacter sp. ER4


ncbi_organism_name: Pseudomonas syringae pv. aptata

ncbi_submitter: University of Belgrade, Faculty of Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aptata


ncbi_organism_name: Escherichia coli PA8

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG11483

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1578

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_country: Turkey: Mugla

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Ondokuz Mayis University, Faculty of Veterinary Medicine


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: limestone wall of ancient building

ncbi_organism_name: Nostoc sp. B(2019)

ncbi_strain_identifiers: B

ncbi_submitter: Centre for Functional Diversity


ncbi_country: China: Guangzhou

ncbi_isolation_source: Urine; bladder (ub)

ncbi_submitter: Peking University People’s Hospital


ncbi_country: China: Nantong; Jiangsu province

ncbi_submitter: Yangzhou University


ncbi_country: China: Guangdong

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Guangdong CDC


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Oceanisphaera marina

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Massachusetts Eye and Ear


ncbi_country: South Africa

ncbi_isolation_source: stool

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Stellenbosch University


ncbi_assembly_name: freshwater MAG --- KR4_bin-0485

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces niveus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_organism_name: Prolixibacteraceae bacterium UBA6036

ncbi_submitter: University of Queensland


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Fenollaria timonensis

ncbi_submitter: University of California, Davis


ncbi_country: India

ncbi_organism_name: Mycobacterium sp. IS-1496

ncbi_submitter: JCVI


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia ruysiae

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Aequorivita sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: COPD W5b

ncbi_submitter: Chengdu University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus safensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Escherichia coli


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Oceanicaulis sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: India: Darjeeling

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Streptomyces sp. SDr-06

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Vulcanimicrobiaceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: USA: Houston

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Turkey: Mersin

ncbi_isolation_source: Greenhouse

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: USA: Tennessee

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Sweden

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterobacter sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Methanobrevibacter smithii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Beijing

ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: China CDC


ncbi_organism_name: Escherichia coli KTE231

ncbi_submitter: Broad Institute


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA:New Jersey; Wharton State Forest; Hawkins Bridge

ncbi_isolation_source: gut dissection

ncbi_organism_name: Mesoplasma whartonense

ncbi_submitter: University of Connecticut


ncbi_organism_name: Synechococcus sp. CCY9201

ncbi_submitter: Universidade de Sao Paulo, Sao Paulo, Brazil


ncbi_country: Senegal: Foundiougne

ncbi_isolation_source: soil from surrounding area

ncbi_organism_name: Mesorhizobium sp. LCM 4577

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: San Diego

ncbi_isolation_source: urine (recurrent UTI)

ncbi_organism_name: Escherichia coli

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Oklahoma

ncbi_isolation_source: retail beef liver

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: The University of Tulsa


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alpinimonas sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pediococcus inopinatus

ncbi_submitter: Dongduk Women's University


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Paeniglutamicibacter kerguelensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Collinsella sp. SGI.180

ncbi_submitter: University of Manitoba


ncbi_organism_name: Candidatus Scybalocola faecigallinarum

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_organism_name: Streptomyces sp. NPDC001276

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: cold seep

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Italy

ncbi_isolation_source: faecal sample

ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Naples Federico II


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Gardnerella leopoldii

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Methanobacteriota archaeon

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Atribacterota bacterium


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anammox granule sludge

ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Chongqing university


ncbi_country: India: Chandigarh

ncbi_isolation_source: Male Behind the ears

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: soil organic matter[ENVO:04000008]

ncbi_organism_name: Oceanobacillus sp. ISL-73

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Caecum

ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Cryptobacterium sp.


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Anaerosporobacter sp.

ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: France: Rennes

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_assembly_name: Rumen uncultured genome RUG117

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Herpetosiphonaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mammaliicoccus sciuri


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Streptococcus salivarius CAG:79

ncbi_submitter: DTU


ncbi_country: China: Lanzhou

ncbi_organism_name: Yersinia pestis EV76-CN

ncbi_submitter: Beijing Genomics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Soochow University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Chitinophaga sp. 212800010-3

ncbi_submitter: NASA


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Veillonella sp.


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Shandong

ncbi_isolation_source: commercial chicken farm

ncbi_organism_name: Enterobacter cloacae complex sp. CH23B

ncbi_submitter: College of Veterinary Medicine,China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. CH23B


ncbi_organism_name: Actinocorallia libanotica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Escherichia coli KTE112

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Sphingomonadales bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Israel: Jerusalem

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Candidatus Accumulibacter conexus

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter conexus


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Thioalkalivibrio sp. ALE10

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Escherichia coli TA007


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Mycobacteriaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Parma


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Massilia sp.


ncbi_assembly_name: TS

ncbi_organism_name: Campylobacter jejuni 4031

ncbi_submitter: UH


ncbi_assembly_name: Salmonella enterica CVM 43821 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Hosei university


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Leibniz Institute for Natural Product Research and Infection Biology


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: FL

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Minnesota


ncbi_country: India: Vellore

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O139

ncbi_submitter: Christian Medical College


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: Canada: British Columbia

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Copenhagen


ncbi_isolation_source: rumen fluid

ncbi_organism_name: Niallia circulans

ncbi_strain_identifiers: CRN 25

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_submitter: Hospital Ramon y Cajal


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sheep faecal samples collected from floor of farm

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides clarus


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: Bean sprouts

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: south China agricultural university


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Vienna


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: USA: Tabernacle Church; Georgia

ncbi_isolation_source: kaolin clays

ncbi_organism_name: Geobacter pickeringii


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India: Punjab; Faridkot; Wara Daraka

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: intestine

ncbi_organism_name: Empedobacter sp. 225-1

ncbi_submitter: City University of Hong Kong


ncbi_country: China: Shanghai

ncbi_isolation_source: sediment

ncbi_organism_name: Knoellia sp. 3-2P3

ncbi_submitter: institute of microbiology, chinese academy of sciences


ncbi_assembly_name: IMG-taxon 2639763197 annotated assembly

ncbi_organism_name: Pseudomonas proteolytica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_country: USA: CA

ncbi_isolation_source: rectum (Ammotragus lervia)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Schaalia odontolytica

ncbi_strain_identifiers: NCTC 9935


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: Malaysia: Sabah Kota Kinabalu

ncbi_isolation_source: intravitreal tap from 78 year old male patient

ncbi_organism_name: Chromobacterium violaceum

ncbi_submitter: Universiti Malaysia Sabah


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Yakult Central Institute


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Ghana: Nyankpala site 2

ncbi_isolation_source: Kantong

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA

ncbi_organism_name: Escherichia coli O111:NM str. K6728

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. K6728


ncbi_organism_name: Candidatus Riesia pediculicola USDA

ncbi_strain_identifiers: USDA

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Candidatus Riesia;s__Candidatus Riesia pediculicola;x__Candidatus Riesia pediculicola USDA


ncbi_country: Australia: Brisbane

ncbi_isolation_source: lungs of cystic fibrosis patient C

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_organism_name: Lacrimispora saccharolytica

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Fusobacterium necrophorum

ncbi_submitter: University of Calgary


ncbi_country: Nigeria

ncbi_submitter: Igbinedion University Okada


ncbi_country: South Africa: North West Province

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Agriculture research council


ncbi_isolation_source: activated sludge

ncbi_organism_name: Sphingomonas sp. KC8

ncbi_submitter: Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient14 sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People Hospital


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: USA: Chicago

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_assembly_name: IMG-taxon 2593339196 annotated assembly

ncbi_organism_name: Dyella marensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: France: Durance river; Tallard

ncbi_isolation_source: river

ncbi_organism_name: Pectobacterium odoriferum

ncbi_submitter: Sorbonne University


ncbi_isolation_source: lung

ncbi_submitter: University of Trento


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_isolation_source: sink drain

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: NIH


ncbi_country: Spain

ncbi_strain_identifiers: BGSC 4AW1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar andalousiensis


ncbi_country: Egypt: Alexandria

ncbi_submitter: University of East Anglia


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Umea University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: Spain: off the coast of Alicante

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_isolation_source: liver

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_country: Argentina: Buenos Aires

ncbi_organism_name: Achromobacter ruhlandii

ncbi_strain_identifiers: CCL 138

ncbi_submitter: Universidad de Buenos Aires


ncbi_country: Poland: Bialystok

ncbi_isolation_source: upper respiratory tract

ncbi_organism_name: Escherichia coli O7:H4

ncbi_submitter: Medical University of Bialystok


ncbi_country: Canada

ncbi_isolation_source: manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: VRIJE UNIVERSITEIT BRUSSEL


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bullifex porci


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG14407

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Greece: Epirus

ncbi_isolation_source: raw sheep milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial washings

ncbi_organism_name: Staphylococcus aureus M0222

ncbi_submitter: Broad Institute


ncbi_country: Slovenia: Domzale

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Biotechnical faculty, University of Ljubljana


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: India

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Research In Tuberculosis


ncbi_country: Lebanon

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese University


ncbi_isolation_source: marine

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: INRAE


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Daviesbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;x__unclassified Candidatus Daviesbacteria;s__Candidatus Daviesbacteria bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_assembly_name: freshwater MAG --- Loclat_bin-07551

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces sp. NPDC059517

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Azospirillum griseum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Jiangsu Ocean University


ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Terriglobales bacterium


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Dekas Lab, Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Aestuariivirga sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: Lutimonas sp.


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin3

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MOJ bin3

ncbi_submitter: Monash University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Brazil

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: National Laboratory of Scientific Computation


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Candidatus Bipolaricaulia bacterium

ncbi_submitter: Diversite, Ecologie et Evolution Microbienne, Unite Ecologie Systematique et Evolution

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;x__unclassified Candidatus Bipolaricaulia;s__Candidatus Bipolaricaulia bacterium


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Goethe University Frankfurt


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Luteimonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacilli bacterium


ncbi_submitter: Hopital Bicetre


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: China: Hengyang

ncbi_isolation_source: puncture fluid

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_country: Mozambique

ncbi_organism_name: Brucella abortus 88/226

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-154

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-154


ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: Xiamen University


ncbi_isolation_source: fermented rice

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: Zhang-LL

ncbi_submitter: Beijing University of Agricultrue


ncbi_country: Australia: Boho South; VIC

ncbi_organism_name: Coprobacillus sp.

ncbi_submitter: University of Queensland


ncbi_country: Spain

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Helicobacter typhlonius


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPLOWO2_02_FULL_42_9


ncbi_country: Brazil: Rio Grande do Sul

ncbi_submitter: Universidade Federal do Rio Grande do Sul

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Thiomonas sp. 13-66-29

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp. 13-66-29


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_country: India: Gujarat; Anand city

ncbi_isolation_source: Milk

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Madurai Kamaraj University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: anaerobic digester filtrate obtained from the belt filter press of the CVWRF wastewater treatment plant

ncbi_organism_name: Candidatus Brocadia sp. UTAMX2

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp. UTAMX2


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter cronae

ncbi_submitter: University of Pittsburgh


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Hong Kong

ncbi_isolation_source: blood culture from bacteremic patient

ncbi_organism_name: Staphylococcus aureus CUHK_HK2007

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Auckland


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lejia lagoon

ncbi_isolation_source: soil alkaline flat

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_country: China

ncbi_isolation_source: Clinical Isolate

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Candidatus Soleaferrea sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Soleaferrea;x__environmental samples;s__uncultured Candidatus Soleaferrea sp.


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Colivivens caballi

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Candidatus Colivivens;s__Candidatus Colivivens caballi


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Lachnoclostridium sp. UBA5725

ncbi_submitter: University of Queensland


ncbi_country: USA: Mystic Aquarium; CT

ncbi_organism_name: Helicobacter cetorum MIT 00-7128

ncbi_submitter: Dept. Molec. Microbiology, Washington University Medical School in Saint Louis


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Aquaticitalea sp.

ncbi_submitter: Rutgers University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Brenneribacteriota;s__Candidatus Brennerbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_43_10


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine