gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The British University in Egypt


ncbi_assembly_level: Scaffold

ncbi_country: China: Shandong

ncbi_isolation_source: commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: University of Chicago


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: wastewater

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R178;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_assembly_name: Rumen uncultured genome RUG13787

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


gtdb_representative: t

ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Norway

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_country: Taiwan

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Lissandra

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University Huashan Hospital


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Pearl River Estuary; Guangdong

ncbi_isolation_source: sediment

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Shantou University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F36687

ncbi_submitter: Broad Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. AF36-3AT

ncbi_submitter: BGI


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_submitter: Huzhou cdc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Russia: Kamchatka

ncbi_isolation_source: root nodule

ncbi_organism_name: Tardiphaga robiniae

ncbi_submitter: ARRIAM


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: sorghum sourdough

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_country: Czech Republic

ncbi_isolation_source: clinical sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, Charles University


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: USA: NM; Lechuguilla Cave

ncbi_isolation_source: cave surface layer

ncbi_organism_name: Rhizobium sp. LC145

ncbi_submitter: Monash University Malaysia


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Poland: Poznan

ncbi_isolation_source: rectum

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Yunnan province

ncbi_isolation_source: root

ncbi_organism_name: Paenibacillus paridis

ncbi_refseq_category: reference genome

ncbi_submitter: Yunnan University

ncbi_type_material_designation: assembly from type material


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: California National Primate Research Center

ncbi_isolation_source: monkey stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Penn State University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2639762527 annotated assembly

ncbi_organism_name: Bacillus sp. cl115

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. cl115


ncbi_country: South Africa: FOSA Hospital

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0113

ncbi_submitter: Broad Institute


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces gardneri

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Japan

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Quadram Institutte


ncbi_country: China

ncbi_isolation_source: Respiratory Medicine

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Guangzhou Medical University


ncbi_isolation_source: Faeces


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Lachnoclostridium sp. UBA1241

ncbi_submitter: University of Queensland


ncbi_country: Nepal

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chicago


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Ireland: Cork

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: El Salvador: San Salvador

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NRRL S-87

ncbi_strain_identifiers: NRRL S-87

ncbi_submitter: University of Illinois


ncbi_isolation_source: cold seep

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Harbin Institute of Technology


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: FNCPS 4

ncbi_submitter: HSE University


ncbi_organism_name: Streptomyces rochei


ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Acinetobacter sp. 2019-01-05

ncbi_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 232

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Salmonella sp. C3210

ncbi_submitter: Sichuan University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: China-Japan Friendship Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Aeromonas sp. 601027

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Thessaly


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_submitter: Shanxi Agricultural University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Priestia koreensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Kiel University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: China:NaQu; Xizang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: WA

ncbi_isolation_source: liver

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: pork

ncbi_organism_name: Salmonella sp. YP101-1

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Selenomonas artemidis DSM 19719

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany

ncbi_isolation_source: human

ncbi_submitter: University Hospital Munster


ncbi_country: Germany: Hamburg

ncbi_isolation_source: sewage system

ncbi_organism_name: Nitrobacter vulgaris

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: South Korea: Daegu

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium sp. M3-R-103

ncbi_submitter: Kyungpook National University School of Medicine


ncbi_organism_name: Actinosynnema sp. NPDC020468

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_country: Russia: Moscow region

ncbi_isolation_source: genitourinary system

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SRCAMB


ncbi_organism_name: Micromonospora chersina


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Warwick; QLD

ncbi_organism_name: Pseudomonas syringae BRIP34881

ncbi_submitter: CSIRO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae BRIP34881


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas marginalis

ncbi_submitter: NIAB East Malling Research


ncbi_organism_name: Xenorhabdus griffiniae

ncbi_submitter: The University of Tennessee


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Buttiauxella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong

ncbi_isolation_source: kefir grains

ncbi_organism_name: Enterococcus durans

ncbi_submitter: South China Agricultural University


ncbi_country: USA

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UC San Diego


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_isolation_source: marine

ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: University of Queensland


ncbi_isolation_source: skin

ncbi_organism_name: Brevibacterium ravenspurgense

ncbi_strain_identifiers: ACRRG

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: sputum from cystic fibrosis patients

ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: Universidade do Estado do Rio de Janeiro


ncbi_country: China:Guiyang and Nanxiong

ncbi_isolation_source: isolated from the tobacco substrate

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Guangdong Academy of Agricultural Science Crops Research Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: EMG


ncbi_isolation_source: Faeces


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: China: JiudianGou village; Liufengguan Town; Feng county; Baoji City; Shaanxi Province

ncbi_organism_name: Tellurirhabdus bombi

ncbi_submitter: Microbiology Institute of Shaanxi


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnobacterium sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Beef Minced meat

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-363-G03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Turin


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22966;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Manitoba


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus M1275

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Lebanon: Middle East Institute of Health

ncbi_organism_name: Stutzerimonas nitrititolerans

ncbi_submitter: Lebanese American University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Spain: Amadorio Reservoir; Alicante

ncbi_isolation_source: freshwater biome

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Colon

ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: Italy: Alghero

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Swansea University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Ramlibacter sp. 2FC

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii 25561_1

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D1_bin-1175

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Tenacibaculum dicentrarchi

ncbi_submitter: Universidad Bernardo OHiggins


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Coprococcus comes

ncbi_submitter: BGI


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Leptolyngbyales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter sp. YH12239

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Endomicrobium sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_country: China: Anhui

ncbi_isolation_source: Contaminated soil of polycyclic aromatic hydrocarbons

ncbi_organism_name: Stenotrophomonas sp. CW117

ncbi_submitter: Anhui Agricultural University


ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Heihe; Heilongjiang

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium denitrificans

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Japan

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Mexico: California Gulf

ncbi_isolation_source: Sea sediment

ncbi_organism_name: Micromonospora sp. BL4

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of Alberta


ncbi_country: USA: Athens County; Ohio

ncbi_isolation_source: groundwater well

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium Athens0416_74


ncbi_country: China: Ningbo

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ningbo First Hospital


ncbi_country: Spain

ncbi_submitter: University of Barcelona


ncbi_country: USA: WA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes SS1447

ncbi_submitter: University of Maryland IGS


ncbi_submitter: Broad Institute


ncbi_isolation_source: soil of hot climate area

ncbi_organism_name: Streptomyces cinnabarinus

ncbi_submitter: Bielefeld University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetales bacterium UBA7549

ncbi_submitter: University of Queensland


ncbi_country: USA: Mt. St. Helens; Washington

ncbi_isolation_source: Spring water

ncbi_organism_name: Legionella sainthelensi

ncbi_submitter: Tel Aviv University


ncbi_country: Antarctica: Lake Reid; Larsemann Hills

ncbi_organism_name: Algoriphagus antarcticus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Melbourne

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_assembly_level: Chromosome

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China Medical University


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Tracheobronchial lavage

ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: School of Veterinary Medicine and Animal Science, University of Sao Paulo


ncbi_country: Germany: Cologne

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Prof. Bart Currie, Menzies School of Health Research


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Micromonosporaceae bacterium B7E4

ncbi_submitter: Ondokuz Mayis university


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: USA: San Diego

ncbi_isolation_source: sputum

ncbi_submitter: San Diego State University


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Limnohabitans sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Herbaspirillum sp. DW155

ncbi_submitter: University of Hyogo


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_country: Belgium

ncbi_isolation_source: Clinical non-CF

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDX8P2P

ncbi_submitter: South China Agricultural University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Desulfurobacterium sp.


ncbi_isolation_source: cold spring

ncbi_organism_name: Paenibacillus algorifonticola

ncbi_submitter: Nanjing Tech University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_country: China: Guangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_country: Romania: Bucuresti

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cantacuzino National Institute of Medico-Military Research-Development


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroides sp. 90-K9/2

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Coriobacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;x__unclassified Candidatus Dormibacteria;s__Candidatus Dormibacteria bacterium


ncbi_organism_name: Synechococcus sp. R55.2

ncbi_submitter: University of Montana


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces violaceus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Paraprevotella clara


ncbi_submitter: Puyang Oil Field General Hospital


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Aquificota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: freshwater MAG --- Umea1p1_bin-710

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Streptomyces sp. NPDC087903

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Poriferihabitaceae bacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Mississippi State University; College of Veterinary Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. dysgalactiae


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: butyrate-producing bacterium SS3/4

ncbi_submitter: MetaHIT


ncbi_country: India

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_isolation_source: cold seep

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Zoogloea sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_assembly_name: freshwater MAG --- Loclat_bin-11250


ncbi_submitter: EMG


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_country: Brazil: Sao Bento do Una

ncbi_isolation_source: fecal sample

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_country: China: Shenzhen

ncbi_isolation_source: vagina swab from a perinatal mother

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Hunter College of City University of New York


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of New South Wales


ncbi_organism_name: Enterococcus larvae

ncbi_submitter: Sichuan University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA154

ncbi_submitter: Broad Institute


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: Argentina: Salinas Grandes; Santiago del Estero

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Estacion Experimental del Zaidin. CSIC


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Fuzhou

ncbi_organism_name: Pseudomonas sp. PSE14

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Saudi Arabia

ncbi_isolation_source: Dammam

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nebraska Medical Center


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: USA: Chicago

ncbi_isolation_source: blood

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Candidatus Limisoma intestinavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;s__Candidatus Limisoma intestinavium


ncbi_organism_name: Pseudescherichia sp.


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5508

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5508


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Nigeria: Delta State; Isoko North; Iyede-Owhe

ncbi_isolation_source: Petroleum contaminated soil

ncbi_organism_name: Lysinibacillus sp. BPa_S21

ncbi_submitter: University of Jos


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: India: Pirana landfill site; Ahmedabad; Gujarat

ncbi_isolation_source: Dumpsite

ncbi_organism_name: Rossellomorea marisflavi

ncbi_submitter: GBRC


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Hydrothermia bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Hydrothermota;c__Candidatus Hydrothermia;x__unclassified Candidatus Hydrothermia;s__Candidatus Hydrothermia bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_submitter: Toho university


ncbi_country: Pakistan: Karak

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: National University of sciences and technology


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Croceitalea sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Spain: Asturias

ncbi_organism_name: Enterococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: USA: Ohio

ncbi_isolation_source: respiratory


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: University of Exeter


ncbi_organism_name: Microvirga sp.

ncbi_submitter: Zhejiang University


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Kribbella shirazensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: river water

ncbi_organism_name: Duganella vulcania

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_country: Germany

ncbi_isolation_source: Kiel Fjord

ncbi_organism_name: Vibrio syngnathi

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: Viet Nam: Ho Chi Minh City

ncbi_isolation_source: urethral exudate

ncbi_strain_identifiers: PIHCM 20415

ncbi_submitter: Pasteur Institute of Ho Chi Minh City


ncbi_isolation_source: small intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Leclercia sp.


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Rubrivivax sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium CG02_land_8_20_14_3_00_36_14


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: coastal Georgia; Sapelo Island

ncbi_isolation_source: Coastal seawater

ncbi_organism_name: Chitinophagia bacterium

ncbi_submitter: Sapelo Island Microbial Carbon Observatory


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: China: Nansha District; Guangzhou city; Guangdong

ncbi_isolation_source: soft rot lesion

ncbi_organism_name: Dickeya zeae

ncbi_submitter: University of Washington


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Canada: Quebec

ncbi_isolation_source: manure

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Government of Canada


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: Charleston

ncbi_organism_name: Rickettsia sp. MEAM1 (Bemisia tabaci)

ncbi_submitter: Cornell University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MN

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: CDC


ncbi_country: South Korea: Pohang

ncbi_isolation_source: Bentonite

ncbi_organism_name: Paenibacillus lutimineralis

ncbi_submitter: Korea Food Research Institute


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Spain

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_strain_identifiers: NCPPB 4381

ncbi_submitter: The Sainsbury Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas vasicola;x__Xanthomonas vasicola pv. musacearum;x__Xanthomonas vasicola pv. musacearum NCPPB 4381


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Shanghai Municipal Center for Diseases Control and Prevention


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: University of Padova


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus


ncbi_country: Canada: southern Alberta feedlot

ncbi_isolation_source: joint from feeder animal

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: USDA/ARS/National Animal Disease Center


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Yanofskybacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;x__unclassified Candidatus Yanofskybacteria;s__Candidatus Yanofskybacteria bacterium


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Synergistales bacterium Syner_03

ncbi_submitter: University of Queensland


ncbi_country: Canada: Ontario

ncbi_isolation_source: Chicken Meat

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Candidatus Phocaeicola merdavium

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. MI02-7b

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum


ncbi_country: Ghana

ncbi_isolation_source: nasal mucosa

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Luebeck


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: apoplast

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_country: Indian Ocean

ncbi_isolation_source: Eastern Africa Coastal Province

ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Canada

ncbi_isolation_source: sinus

ncbi_organism_name: Dolosigranulum pigrum

ncbi_submitter: Forsyth Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0645

ncbi_submitter: Broad Institute


ncbi_isolation_source: Troups Creek Wetland

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Monash University


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Paenibacillus thiaminolyticus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Candidatus Gallimonas gallistercoris

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas gallistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas gallistercoris


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_submitter: Stanford Healthcare


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Ares Genetics


ncbi_organism_name: Campylobacter lari

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Taiwan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Propionibacterium sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Denmark: Viborg

ncbi_isolation_source: activated sludge from Vibo_18-Q3-R45-57

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: China:Qinling Mountains

ncbi_isolation_source: rhizomes

ncbi_organism_name: Amycolatopsis sp. BJA-103

ncbi_submitter: Northwest A&F Unversity


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei INT4-Bp18

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1230

ncbi_submitter: Broad Institute


ncbi_organism_name: Imperialibacter sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Candidatus Avelusimicrobium fimicolum

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: United Kingdom

ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SC


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Spain

ncbi_isolation_source: leaves

ncbi_organism_name: Micromonospora foliorum

ncbi_submitter: Universidad de Salamanca


ncbi_assembly_name: freshwater MAG --- A2_bin-0517

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroides pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Niabella sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Enterococcus faecium EnGen0312


ncbi_country: China: Shenyang

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Morganella morganii

ncbi_submitter: National Chung Cheng University


ncbi_country: China

ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Pseudarthrobacter sulfonivorans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater SAG --- SB-2103-1078-O13

ncbi_isolation_source: freshwater

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Blautia caecimuris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-5030

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Erciyes Univ. Faculty of Veterinary Medicine


ncbi_organism_name: Dyella sp. 20L07

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_submitter: Penn State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Desulfobia sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_organism_name: Sulfitobacter sp. 1A12126

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tai Zhou Hospital of Traditional Chinese Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Enterobacter hormaechei subsp. steigerwaltii

ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Laboratory of Veterinary Bacteriology UFRGS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_assembly_name: Rumen uncultured genome RUG13631

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: Brazil: Blumenau


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Nakamurella sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Nocardioides sp.


ncbi_organism_name: Agrobacterium cavarae

ncbi_submitter: Academia Sinica


ncbi_organism_name: Symbiopectobacterium purcellii

ncbi_strain_identifiers: MEX

ncbi_submitter: University of California Merced

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Symbiopectobacterium;s__Symbiopectobacterium purcellii


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_submitter: WRAIR-Africa


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: United Kingdom:Northern Ireland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Bejing

ncbi_isolation_source: Nose

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium ADurb.Bin292


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UNICAMP


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre pasteur du Cameroun


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG634

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: Burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Enterobacter cloacae


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1421

ncbi_submitter: Broad Institute


ncbi_country: South Korea: Jeju-do; Jeju-si; Doryeonnam 6-gil

ncbi_isolation_source: air

ncbi_organism_name: Hymenobacter sp. 5317J-9

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Quinella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Prochlorococcus marinus XMU1421

ncbi_submitter: China University of Geosciences


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Madagascar

ncbi_isolation_source: Carriage

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: MN

ncbi_isolation_source: bone marrow

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-0301

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Prevotella sp.


ncbi_country: USA: Michigan

ncbi_isolation_source: School cold water tap

ncbi_organism_name: Legionella taurinensis

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Staphylococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_country: Germany: Munich

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_country: Italy: Pavia

ncbi_isolation_source: Automated Teller Machine

ncbi_organism_name: Superficieibacter sp. 1612_C1

ncbi_submitter: University of Pavia


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Chicago


ncbi_country: USA: Fresno County

ncbi_submitter: California State University Fresno


ncbi_organism_name: Campylobacter sp. BCW_4317

ncbi_submitter: University of California at Davis


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Promicromonospora sukumoe

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Hong Kong: Ocean Park

ncbi_isolation_source: aquarium water

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: Colombia: Bogota

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


gtdb_type_species_of_genus: t

ncbi_organism_name: Novosphingobium capsulatum NBRC 12533

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.0 m chemocline layer of meromictic lake

ncbi_organism_name: Prosthecochloris vibrioformis

ncbi_submitter: Academia Sinica


ncbi_country: Japan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Luteibacter sp. SG786


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Tibet

ncbi_isolation_source: seed

ncbi_organism_name: Flexivirga meconopsidis

ncbi_submitter: Institute of Agricultural Resource and Regional Planning, CAAS


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Solobacterium sp.


ncbi_country: USA: Tucson; AZ

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_organism_name: Planktomarina sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Missouri

ncbi_isolation_source: blood

ncbi_organism_name: Haematospirillum jordaniae

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Thailand: Phitsanulok

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cardiff University


ncbi_country: Tunisia: Sousse

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Streptomyces luteogriseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: SREG

ncbi_organism_name: Saccharopolyspora rectivirgula DSM 43747

ncbi_submitter: uppasala University & Jawaharlal Nehru University


ncbi_organism_name: Microcoleus sp. Z1_A1

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Mesorhizobium sp. M0140

ncbi_submitter: Washington State University


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Desulfuromonadales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_assembly_name: Rumen uncultured genome RUG10315

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Prevotella sp. UBA641

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Clostridium chromiireducens


ncbi_country: Spain: Laguna del Marquesado

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Polynucleobacter sp. es-MAR-4

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Ruminococcaceae bacterium UBA5891


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA:Florida; Big Torch Key

ncbi_organism_name: Micromonospora sp. WMMD998

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: cold seep

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NBC_00391

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Umbilicus Swab

ncbi_organism_name: Corynebacterium glucuronolyticum

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Escherichia coli STEC_O31

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_submitter: Aarhus University


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: USA: California

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: mesophilic anaerobic digestion

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Spain:Mallorca; Balearic Islands

ncbi_isolation_source: subsurface water sample

ncbi_organism_name: Pseudomonas aeruginosa P37

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: uncultured Tepidisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Buchnera aphidicola (Meitanaphis microgallis)

ncbi_submitter: Shanxi University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Ruminococcaceae bacterium UBA1425

ncbi_submitter: University of Queensland


ncbi_country: Japan

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Yakult Central Institute


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:609

ncbi_submitter: DTU


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: dairy Item

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: PARC-National Agricultural Research Center


ncbi_organism_name: Herbaspirillum sp. B65

ncbi_submitter: Kazusa DNA Research Institute


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Turneriella sp.


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Klebsiella sp. 141161

ncbi_submitter: West China Hospital, Sichuan University


ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Fluviibacter sp.


ncbi_organism_name: Pirellulaceae bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Calgary


ncbi_organism_name: Metabacillus sp. 113a

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_organism_name: Weissella cibaria

ncbi_submitter: Jiangsu University


ncbi_organism_name: Thiobacillaceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Cohnella sp. GCM10012308

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Haliangium sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Uruguay

ncbi_isolation_source: activated sludge reactor flocs

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Biological Research Institute "Clemente Estable"


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Utah


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: Spribille Lab


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: Moto (seed mash for sake fermentation)

ncbi_organism_name: Leuconostoc mesenteroides subsp. sake

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin14

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: KAP bin14

ncbi_submitter: Monash University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA

ncbi_organism_name: Avibacterium gallinarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Zhejiang University


ncbi_country: USA: California; Eel River; Mainstem Eel River near Holmes Flat

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Oscillatoriales cyanobacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_country: Argentina

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Serratia nevei


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Dialister invisus

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Morganella morganii

ncbi_submitter: Ares Genetics


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: heel ulcer

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Paenibacillus sp. W4I10


ncbi_organism_name: Methylobacterium organophilum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptococcus agalactiae BSU96

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Empedobacter sp. 189-2

ncbi_submitter: City University of Hong Kong


ncbi_country: Germany: Cologne

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Cologne


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_submitter: DTU Bioinformatics


ncbi_submitter: Carleton University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Ares Genetics


ncbi_assembly_name: Rumen uncultured genome RUG10778

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Pseudomonas sp. RV120224-01c

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Bacillus rubiinfantis

ncbi_submitter: EMG


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: WA

ncbi_submitter: US Food and Drug Administration


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: Rumen uncultured genome RUG326

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: mammary gland

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter sp. N18-03635

ncbi_submitter: Public Health Agency of Canada


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Alicyclobacillaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Pakistan

ncbi_isolation_source: feces


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chulalongkorn University


ncbi_country: Spain

ncbi_organism_name: Vibrio anguillarum RV22

ncbi_submitter: Oregon Health Sciences University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio anguillarum;x__Vibrio anguillarum serovar O2;x__Vibrio anguillarum RV22


ncbi_organism_name: Pseudomonas syringae pv. coryli

ncbi_submitter: Tecnologico de Monterrey

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas syringae pv. coryli


ncbi_country: USA

ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_isolate: liquid

ncbi_isolation_source: culture

ncbi_organism_name: Mycolicibacterium aurum

ncbi_strain_identifiers: liquid

ncbi_submitter: PASTEUR


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Nasopharyngeal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_assembly_name: freshwater MAG --- KTt_bin-2223

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Loyola University Chicago


ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis