ncbi_country: Italy: Emilia Romagna; Casola Valsenio

ncbi_organism_name: Bacillus sp. OVS6

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. OVS6


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: freshwater MAG --- AM-2014-D2_bin-294

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_country: China: Neimenggu

ncbi_isolation_source: the condensate water of the Shenzhou-9 spacecraft

ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: Chinese PLA general hospital


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus F32629

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Spain: Galicia; Carril

ncbi_organism_name: Rahnella sp. CJA17(1/100)

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_organism_name: Microbulbifer agarilyticus S89

ncbi_submitter: Korea Ocean Research and Development Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: USA: Calhoun; Tennessee

ncbi_organism_name: Sphingobium sp. B7D2B

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia

ncbi_isolation_source: stomach

ncbi_organism_name: Acinetobacter sp. VT 511

ncbi_submitter: Institute of Human Microbiology


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Rhodobacter capsulatus SB 1003

ncbi_refseq_category: reference genome

ncbi_submitter: Univ. Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;x__Rhodobacter group;g__Rhodobacter;s__Rhodobacter capsulatus;x__Rhodobacter capsulatus SB 1003


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Atopobiaceae bacterium UBA5465

ncbi_submitter: University of Queensland


ncbi_organism_name: Gardnerella piotii

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: Microcoleus sp. ARI1-B5

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Streptomyces coeruleorubidus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_country: Israel

ncbi_isolation_source: animal

ncbi_submitter: Sheba medical center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Blockley


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. VA_R100506907


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: USA

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: India

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Germany

ncbi_isolation_source: chicken

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Galway


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Russia: Rostov-on-Don

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_strain_identifiers: Ogawa 18963

ncbi_submitter: Research Institute for Plague Control

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_organism_name: Abiotrophia defectiva

ncbi_submitter: EMG


ncbi_country: China: Yunnan

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_country: South Korea: Seoul

ncbi_isolation_source: grassland soil

ncbi_organism_name: Planctomonas sp. JC2975

ncbi_submitter: Sangji University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thioclava sp. UBA3469

ncbi_submitter: University of Queensland


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phocaeicola plebeius


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: Canada: Nunavut; Bylot Island; Tundra Pond

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechococcus sp. CS-1333

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jeonbuk National University


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_submitter: Shandong University


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis priestleyi ANA and associated heterotrophs

ncbi_organism_name: Oceanicaulis sp. HLUCCA04

ncbi_submitter: Pacific Northwest National Laboratroy


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_country: China: Beijing

ncbi_isolation_source: beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Streptomyces sp. NPDC006687

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Proteus sp. G2615

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2615


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Loyola University Chicago


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0028

ncbi_submitter: Broad Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: Pus

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


gtdb_type_species_of_genus: t

ncbi_country: Brazil: Seropedica; Rio de Janeiro

ncbi_isolation_source: plant (maize/sorghum/rice)

ncbi_organism_name: Herbaspirillum seropedicae

ncbi_submitter: Universidade Federal do Parana

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: NanJing University


ncbi_assembly_name: IMG-taxon 2695420950 annotated assembly

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Bittarella (ex Durand et al. 2017);s__Bittarella massiliensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Bittarella (ex Durand et al. 2017);s__Bittarella massiliensis (ex Durand et al. 2017)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Romania

ncbi_organism_name: Mycobacterium tuberculosis 2230BH


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: China: Shaanxi

ncbi_isolation_source: Chinese pickles (in soy sauce)

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Karolinska Institutet


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: uncultured Haemophilus sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Duodenibacillus sp.


ncbi_country: USA: Oregon

ncbi_isolation_source: ground beef

ncbi_organism_name: Vagococcus carniphilus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Russia: Moscow

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Bioplatforms Australia


ncbi_isolation_source: soil

ncbi_organism_name: Corallococcus exercitus

ncbi_submitter: Aberystwyth University


ncbi_country: France: Normandy

ncbi_isolation_source: sink trap

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lund University


ncbi_assembly_level: Chromosome

ncbi_isolation_source: burn wound

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_country: Jersey

ncbi_submitter: University of Bath


ncbi_organism_name: Actinomadura nitritigenes

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon


ncbi_country: China: Shenzhen

ncbi_submitter: BGI


ncbi_country: Viet Nam

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Bhutan

ncbi_isolation_source: leaf midrib

ncbi_organism_name: Candidatus Liberibacter sp.

ncbi_submitter: NSW Department of Primary Industries


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: United Kingdom: Fife

ncbi_isolation_source: stool sample

ncbi_submitter: University of Glasgow


ncbi_isolation_source: rectal swab

ncbi_submitter: Monash University


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Beef Ribs

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_country: France

ncbi_organism_name: Enterobacter pasteurii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Ruminococcus sp. AF12-5


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: South China Agricultural University


ncbi_country: India: Odisha

ncbi_isolation_source: gut

ncbi_organism_name: Stenotrophomonas sp. PI_27

ncbi_submitter: Institute of Life Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_country: Germany

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Bifidobacterium scardovii

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Shantou Town; Lianjiang County; Fujian Province

ncbi_isolation_source: Monochamus alternatus

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Paulownia witches'-broom phytoplasma

ncbi_strain_identifiers: PaWB-Japan

ncbi_submitter: Laboratory of Plant Pathology, Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrI (Aster yellows group);s__Paulownia witches'-broom phytoplasma


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Turkey

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: Malaysia: Perak

ncbi_isolation_source: Mangrove soil

ncbi_organism_name: Pararhodobacter sp. CCB-MM2

ncbi_submitter: Universiti Sains Malaysia


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1913

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium ferriphilum


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Umea1p2_bin-0095

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Peru: Lima

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: Michigan; Powell Township; Upper Pine Lake

ncbi_isolation_source: water

ncbi_organism_name: Stenotrophomonas sp. HMWF023

ncbi_submitter: University of Illinois


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae MGH 39

ncbi_strain_identifiers: MGH 39

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MGH 39


ncbi_country: Colombia

ncbi_isolation_source: feces

ncbi_submitter: Instituto Nacional de Salud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Mesomycoplasma hyopneumoniae 7422

ncbi_submitter: Genesul


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_submitter: Washington University in St Louis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Knoellia altitudinis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wyoming


ncbi_isolate: AOP8_A1_surf _bin _8

ncbi_organism_name: Vibrio casei

ncbi_strain_identifiers: AOP8_A1_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KULeuven


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Streptomyces anthocyanicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Venatoribacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Acetobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Sphingomonas sp. SAFR-052

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Streptomyces diastaticus


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Denmark: North Greenland; Brnlundhus; Peary land

ncbi_isolate: PEA bin7

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: PEA bin7


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: ProBone


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: EPFL


ncbi_country: Brazil: Belem

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- YR1_bin-0612

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Kapaibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;x__unclassified Candidatus Kapaibacteriota;s__Candidatus Kapaibacteriota bacterium


ncbi_organism_name: Acinetobacter sp. HRXRD-152

ncbi_submitter: Jilin Agricultural University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: 0.2-1 micron

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_country: China: Yunnan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1470

ncbi_submitter: Broad Institute


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Actinomyces bowdenii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P9 C A35

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_organism_name: Nitriliruptorales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: Massachusetts

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Anaerolineales bacterium


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: China: Shanghai

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: School of Agriculture and Biology, Shanghai Jiao Tong University


ncbi_country: Greece: western Greece

ncbi_isolation_source: spleen

ncbi_organism_name: Mycobacterium pseudoshottsii

ncbi_strain_identifiers: AR

ncbi_submitter: University of Patras


ncbi_country: South Korea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Lutibacter oceani

ncbi_submitter: Shandong University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Oxford


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA

ncbi_isolation_source: sterile site

ncbi_submitter: The UT MD Anderson Cancer Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_isolation_source: marine

ncbi_organism_name: Alteromonas sp.

ncbi_submitter: University of Queensland


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: Ithaca

ncbi_isolation_source: cows with mastitis at dairy farm

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: UNICAMP


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: China: Quanzhou Bay; Fujian

ncbi_isolation_source: coastal sediment

ncbi_organism_name: Croceicoccus sediminis

ncbi_submitter: Third Institute of Oceanography, SOA


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: McGill University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Mediterraneibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Seoul National University Children's Hospital


ncbi_country: China: Hainan Island

ncbi_organism_name: Vreelandella aquamarina

ncbi_strain_identifiers: SCSIO 43005

ncbi_submitter: South China Sea Institute of Oceanology,Chinese Academy of Sciences


ncbi_country: Australia: Brisbane

ncbi_organism_name: Clostridiales bacterium AHG0011

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus lactis


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0443R

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Animal Husbandry and Veterinary Medicine


ncbi_country: China: Luzhou

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Southwest Medical University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_organism_name: Enterococcus sp. E5-37

ncbi_submitter: Institute of Marine Research


ncbi_isolation_source: activated sludge

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University Hong Kong


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella sp. S141_59878

ncbi_submitter: Zhejiang University


ncbi_country: South Korea:Sunchang County

ncbi_isolation_source: Korean soybean paste

ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: SCCB 37

ncbi_submitter: Chonbuk National University


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-0996

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: freshwater

ncbi_organism_name: Legionellales bacterium


ncbi_country: China: Xiamen

ncbi_organism_name: Myxococcus sp. XM-1-1-1

ncbi_submitter: Guangdong Academy of Sciences


ncbi_country: China: Yongren; Chuxiong; Yunnan

ncbi_isolation_source: soil

ncbi_organism_name: Ralstonia chuxiongensis

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Harvard T.H. Chan School of Public Health


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: IMG-taxon 2623620524 annotated assembly

ncbi_organism_name: Micromonospora yangpuensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia: Warwick; QLD

ncbi_organism_name: Pseudomonas syringae BRIP34876

ncbi_submitter: CSIRO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae BRIP34876


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptosporangiaceae bacterium


ncbi_country: Denmark

ncbi_organism_name: Frederiksenia canicola

ncbi_strain_identifiers: HPA 21

ncbi_submitter: University of Copenhagen


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Achromobacter insolitus

ncbi_submitter: University of Queensland


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Laboratoire de sante publique du Quebec


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Sulfobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Candidatus Sulfobium;x__unclassified Candidatus Sulfobium;s__Candidatus Sulfobium sp.


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Zhejiang University


ncbi_country: USA: International Space Station

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: Charles University


ncbi_isolation_source: Environmental; Phanerochaete chrysosporium fungus

ncbi_organism_name: Paraburkholderia fungorum

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China

ncbi_isolation_source: Soil

ncbi_organism_name: Chryseobacterium taklimakanense

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: School of Medicine, Southeast University


ncbi_country: China: Chongqing

ncbi_isolation_source: milk from farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: 1169SA97 assembly

ncbi_isolation_source: Animal

ncbi_submitter: inrae nouzilly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China agricultural university


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: terrestrial

ncbi_organism_name: Exiguobacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp.


ncbi_country: Poland

ncbi_isolation_source: Trifolium rubens root nodule

ncbi_organism_name: Pantoea trifolii

ncbi_submitter: Maria Curie Sklodowska University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Planktomarina temperata

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Hungary: Lake Ferto

ncbi_isolation_source: water

ncbi_organism_name: Phragmitibacter flavus

ncbi_submitter: Eotvos Lorand University


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Australia: WA; Canna

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. CA12

ncbi_submitter: Curtin University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Wound/Abscess

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Stenotrophomonas sp.


ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: Georgia

ncbi_isolation_source: Patient ulcer

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: National Center for Disease Control and Public Health (NCDC) of Georgia


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_country: Ethiopia

ncbi_organism_name: Xanthomonas vasicola pv. musacearum


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia sp. AF02-12

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Hospital patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LONDON SCHOOL OF HYGIENE AND TROPICAL MEDICINE


ncbi_organism_name: Selenomonas felix

ncbi_submitter: URMITE


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8832

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_submitter: Chung Shan Medical University


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: water: water; running

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F77967

ncbi_submitter: Broad Institute


ncbi_country: India: Vellore

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC2710

ncbi_submitter: Christian Medical College


ncbi_country: South Korea: Seoul

ncbi_organism_name: Succinivibrionaceae bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Portugal

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Agriculture and Food Development Authority


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae UHKPC77

ncbi_submitter: JCVI


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Terrimonas sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;s__Candidatus Kerfeldbacteria bacterium RIFCSPHIGHO2_12_FULL_42_13


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: Taiwan: New Taipei City

ncbi_isolation_source: urine

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Blockley


ncbi_country: Japan

ncbi_isolation_source: HCH contaminated soil

ncbi_organism_name: Pseudomonas gorinensis

ncbi_strain_identifiers: TKP

ncbi_submitter: Tohoku University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: cold seep

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Palmer LTER


ncbi_organism_name: Streptomyces longwoodensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_assembly_name: freshwater MAG --- Ki1-1-6m_bin-0112

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Rochester; NY

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0302293.2

ncbi_submitter: IGS


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Austria: Salzburg

ncbi_isolation_source: Vagina

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: South Korea

ncbi_isolation_source: Plant

ncbi_organism_name: Chryseobacterium caseinilyticum

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_assembly_name: IMG-taxon 2700988682 annotated assembly

ncbi_organism_name: Fibrobacter sp. UWB8

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_assembly_name: Salmonella enterica CVM N46838 v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China

ncbi_isolation_source: dried seaweed

ncbi_organism_name: Aeromicrobium tamlense

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Marinobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Brevundimonas nasdae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: freshwater MAG --- AM5_bin-0704

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-6119

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: German Federation for Biological Data


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Helicobacter pylori


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Shandong University


ncbi_organism_name: Oceanicaulis sp.


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Qingdao Agricultural University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyorin University Faculty of Medicine


ncbi_organism_name: uncultured Flavobacterium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_organism_name: Pseudoalteromonas nigrifaciens

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Vibrio harveyi

ncbi_strain_identifiers: SM 1

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_organism_name: Enterocloster sp.


ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Rhizobium sp. Rhizsp82

ncbi_submitter: North Carolina State University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Gemmatimonadota bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Agroscope


ncbi_organism_name: uncultured Ginsengibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Philadelphia

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_isolate: FBPNS

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes timonensis JC136

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_submitter: APC Microbiome Ireland


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Arsenophonus sp.

ncbi_submitter: Northwest A&F University


ncbi_country: South Korea: Taean

ncbi_isolation_source: soil from solar saltern

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: WooSong University


ncbi_organism_name: Prevotella intermedia

ncbi_submitter: EMG


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: India: Andaman islands

ncbi_isolation_source: mangrove water sample

ncbi_organism_name: Alkalibacterium sp. MB6

ncbi_submitter: Indian Institute of Science Education and Research, Bhopal


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Spongiibacter marinus

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Snowella sp.

ncbi_submitter: CSIR-Centre for Cellular and Molecular Biology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium sp. ACRPE

ncbi_submitter: NHGRI/NIH


ncbi_country: Taiwan

ncbi_isolation_source: shallow sea hydrothermal fluids

ncbi_organism_name: Thermovibrio sp.

ncbi_submitter: Ministry of Natural Resources, Third Institute of Oceanography


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: IA

ncbi_isolation_source: grainbin dust

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: soda lake surface water

ncbi_organism_name: Rhabdonatronobacter sediminivivens

ncbi_submitter: institute of Microbiology,Chinese Academy of Sciences


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: water

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The Ohio State University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: Russia: Arkhangel sk region; Bukhta Tikhaya; Gukera Island; Franz Josef Land

ncbi_isolation_source: moss rhizosphere; soil near a stream at hydropost

ncbi_organism_name: Rhodococcus rhodochrous

ncbi_strain_identifiers: IEGM 1360

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Rahnella inusitata

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_organism_name: Romboutsia sp. Marseille-P6047

ncbi_submitter: URMITE


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-10528

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_submitter: University of Waterloo


ncbi_country: China: Tibet

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Streptomyces sp. NPDC002418

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Merdivivens pullistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__Muribaculaceae incertae sedis;g__Candidatus Merdivivens;s__Candidatus Merdivivens pullistercoris


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: human gut

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: soil from electronic waste dumpsite

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Ibadan, Nigeria


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: India: Fort Dindigul; Dindigul; Tamil Nadu

ncbi_isolation_source: stone ruins (granite) from a temple wall

ncbi_organism_name: Williamsia sp. DF01-3

ncbi_submitter: University of New Hampshire


ncbi_organism_name: uncultured Metamycoplasma sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Christensenella sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0156

ncbi_submitter: Broad Institute


ncbi_organism_name: Dokdonia sp. Asnod1-B02

ncbi_submitter: Station Biologique de Roscoff


ncbi_country: Colombia: Cordoba

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 140

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Walailak University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: USA: DC

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: South Africa: KwaZulu-Natal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zoonosis Science Center


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium UBA6576


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Rumen uncultured genome RUG12712

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Cohaesibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG340

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Shanghai

ncbi_isolation_source: Plant

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Gribaldobacteria;s__bacterium (Candidatus Gribaldobacteria) CG_4_10_14_0_2_um_filter_33_15


ncbi_organism_name: Klebsiella grimontii


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: Peru: Lima

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: vagina

ncbi_submitter: URMITE


ncbi_isolation_source: human gut

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: EMG


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Atlantic Ocean

ncbi_isolation_source: hydrothermal fluid

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: tracheobronchial wash

ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: School of Veterinary Medicine and Animal Science, University of Sao Paulo


ncbi_country: Switzerland

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Escherichia coli M17

ncbi_submitter: Department of Pediatrics, Washington University School of Medicine


ncbi_country: Brazil

ncbi_isolation_source: chicken piece (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Shanghai Ocean University


ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Netherlands

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Italy

ncbi_isolation_source: sorghum sourdough

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Hymenobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo AC


ncbi_country: Malaysia: Perak

ncbi_isolation_source: Mangrove soil

ncbi_organism_name: Salipiger sp. CCB-MM3

ncbi_submitter: Universiti Sains Malaysia


ncbi_country: USA: Soudan Iron Mine; Minnesota

ncbi_isolation_source: brine fluids

ncbi_organism_name: Roseovarius sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: rat gut

ncbi_organism_name: Lactococcus sp. UBA7065

ncbi_submitter: University of Queensland


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Actinomyces graevenitzii

ncbi_submitter: University of California, Berkeley


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_organism_name: Flavobacteriales bacterium


ncbi_organism_name: Pseudobutyrivibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Mitsuokella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium adolescentis JCM 15918

ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: South Africa: Prince Msheyeni

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0004

ncbi_submitter: Broad Institute


ncbi_country: China: Gungdong

ncbi_isolation_source: Wound secretion

ncbi_submitter: South China Agricultural University


ncbi_country: South Korea: Yeongdeok-gun; Gyeongsangbuk-do

ncbi_isolation_source: freshwater

ncbi_organism_name: Rouxiella sp. S1S-2

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_organism_name: Diaphorobacter nitroreducens


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: CA

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Dialister invisus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: India: Pudumadam

ncbi_organism_name: Fusobacterium sp. JB019

ncbi_submitter: JNTUH


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: ARRIAM


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Estonia: Tartumaa; Emajogi puhasti kraavist allavoolu

ncbi_isolation_source: river

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Streptomyces sp. R44

ncbi_submitter: College of resources and Environmental Sciences


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Syntrophus aciditrophicus

ncbi_submitter: University Duisburg-Essen


ncbi_country: Slovenia

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: National laboratory for health, environment and food


ncbi_isolation_source: Faeces


ncbi_country: Italy: Ancona

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_country: USA

ncbi_organism_name: Escherichia coli PA38

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Denmark: Hvidovre

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Escherichia coli TX1999


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: Netaji Subhas University of Technology


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 213 (4-3042928)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 213 (4-3042928)


ncbi_country: Spain:Valencia; Paterna

ncbi_organism_name: Serratia symbiotica SCt-VLC

ncbi_strain_identifiers: SCt-VLC

ncbi_submitter: ICBIBE-UV


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Microcystis aeruginosa PCC 9808

ncbi_submitter: Genoscope CEA


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Niallia circulans

ncbi_submitter: C.N.R. - Institute for Biological Resources and Marine Biotechnology (IRBIM)


ncbi_country: Brazil:Santa Catarina; Sao Jose

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Cornell University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Coprococcus eutactus


ncbi_organism_name: Salmonella sp. NW238

ncbi_submitter: Sichuan University


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_isolate: AOP42_C2_surf _bin _3

ncbi_organism_name: Oceanisphaera sp.

ncbi_strain_identifiers: AOP42_C2_surf _bin _3

ncbi_submitter: Genoscope


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__environmental samples;s__uncultured Candidatus Rokubacteria bacterium


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Falsiroseomonas sp. CW058

ncbi_submitter: Hankyong National University


ncbi_organism_name: Alistipes onderdonkii


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Haifa


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_submitter: Stony Brook University


ncbi_country: United Kingdom

ncbi_isolation_source: hip replacement

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_isolate: AOP7_E1_surf _bin _3

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP7_E1_surf _bin _3


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: cecal contents

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Universidad de Zaragoza, Facultad de Veterinaria


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_strain_identifiers: LMG 941

ncbi_submitter: Institute of Microbial Technology (CSIR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae;x__Xanthomonas citri pv. mangiferaeindicae LMG 941

ncbi_type_material_designation: assembly from pathotype material


ncbi_organism_name: uncultured Eisenbergiella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China

ncbi_isolation_source: water

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Capital Institute of Pediatrics,Beijing, China


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom: Hatchlands

ncbi_isolation_source: Oak rhizosphere soil

ncbi_organism_name: Dryocola clanedunensis

ncbi_submitter: UWE


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Christian Medical College


ncbi_country: Singapore: Singapore General Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College London (UCL)


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Streptomyces sp. NPDC001165

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hangzhou

ncbi_submitter: Hangzhou First People's Hospital


ncbi_organism_name: uncultured Treponema sp.


ncbi_assembly_name: IMG-taxon 2675903135 annotated assembly

ncbi_organism_name: Streptacidiphilus jiangxiensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Jiangsu

ncbi_isolation_source: bile

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: University of Chicago


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Schaalia turicensis ACS-279-V-Col4

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus VRS1


ncbi_country: USA

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: JCVI


ncbi_country: Reunion

ncbi_isolation_source: leaf

ncbi_strain_identifiers: CFBP 6369

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas euvesicatoria;x__Xanthomonas euvesicatoria pv. allii;x__Xanthomonas euvesicatoria pv. allii CFBP 6369


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Italy: Banari

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: Colombia

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institute


ncbi_country: Italy: Rome

ncbi_isolate: BIN 2

ncbi_isolation_source: anaerobic reactor producing medium/long chain fatty acids through the fermentation of food waste

ncbi_organism_name: Mesosutterella multiformis

ncbi_strain_identifiers: BIN 2

ncbi_submitter: Italian National Research Council (CNR)


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: University of Queensland


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: LMU Munich


ncbi_country: Russia:Novgorod Region; Staraya Russa resort

ncbi_isolation_source: Thiodendron  bacterial sulfur mat from mineral sulfide spring

ncbi_organism_name: Thiospirochaeta perfilievii

ncbi_strain_identifiers: P

ncbi_submitter: NEB


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro


ncbi_organism_name: Catellatospora sp. NPDC049133

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_submitter: Nanyang Technological University


ncbi_country: China

ncbi_isolation_source: paddy soil

ncbi_organism_name: Cellulomonas iranensis

ncbi_submitter: Jilin Agricultural University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Toho University


ncbi_assembly_name: Rumen uncultured genome RUG422

ncbi_organism_name: Thermobifida fusca

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_assembly_name: freshwater MAG --- Umea_bin-05471

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis ATCC 8503

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis ATCC 8503


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: cBio Corp


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Parabacteroides distasonis


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycobacterium paraintracellulare

ncbi_submitter: National Jewish Health


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: Germany: Berlin

ncbi_isolation_source: gastric antrum

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Laspinema palackyanum D2b

ncbi_submitter: Palacky University in Olomouc


ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: France: Brittany

ncbi_isolation_source: hemolymph

ncbi_organism_name: Pseudoalteromonas rhizosphaerae

ncbi_submitter: Universite de Bretagne Occidentale


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_country: China: Guangzhou

ncbi_isolation_source: shrimp

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: Spain: Madrid

ncbi_isolation_source: stomach

ncbi_submitter: University of Gothenburg


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Clear Labs, Inc.


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_submitter: University of Guelph


ncbi_country: China: Guangxi

ncbi_isolation_source: sediment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Brazil: Parana State.

ncbi_isolation_source: ulcer exudate

ncbi_organism_name: Neisseria brasiliensis

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: Kenya

ncbi_organism_name: Prevotella sp. UBA5886

ncbi_submitter: University of Queensland


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Terrisporobacter othiniensis


ncbi_organism_name: Olegusella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Kordiimonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bacillus cereus group sp. WSBC 10925

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. WSBC 10925


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Yersinia pestis MGJZ6

ncbi_submitter: Beijing Genomics Institute


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University