ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_isolate: Sphingomonas sp. T1

ncbi_organism_name: Sphingomonas sp. T1

ncbi_strain_identifiers: Sphingomonas sp. T1

ncbi_submitter: Elham Karimi


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_assembly_level: Chromosome

ncbi_isolation_source: Sponge: Agelas oroides

ncbi_organism_name: uncultured Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__environmental samples;s__uncultured Poribacteria bacterium


ncbi_assembly_level: Complete Genome

ncbi_country: France

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: INRA Jouy-en-Josas


ncbi_organism_name: Mycolicibacterium septicum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_country: China: Ningxia

ncbi_isolation_source: bark

ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sun-yat Sen University


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_country: Netherlands: Mokbaai

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Electrothrix gigas

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Romboutsia sp.


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Oropharynx

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_isolation_source: lung

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Ares Genetics


ncbi_country: India: Karnataka

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Teichococcus oryzae

ncbi_refseq_category: reference genome

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College

ncbi_type_material_designation: assembly from type material


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Caledonia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira ellisii

ncbi_submitter: Institut Pasteur Montevideo


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Low respiratory tract infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: Chicago; Illinois

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Rutgers University


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bacillus cereus group sp. BCN88

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN88


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: Pakistan: Bin Qasim Town

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: Algeria: El-Tarf

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium canariense

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: diarrheal stool

ncbi_organism_name: Clostridioides difficile

ncbi_strain_identifiers: RkCd

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Staphylococcus aureus W89579

ncbi_submitter: Broad Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Viet Nam:Ho Chi Minh City

ncbi_isolation_source: gut contents of Mastacembelus

ncbi_submitter: Hiroshima University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_country: USA: California; Middletown

ncbi_organism_name: Legionella longbeachae

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Flavobacterium psychraquaticum

ncbi_submitter: Universidad Andres Bello


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Guangdong

ncbi_isolation_source: Acid mine drainage

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Alteromonas sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: Urine

ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: USA: Washington state

ncbi_organism_name: Streptomyces alfalfae

ncbi_submitter: Hebei Agricultual University


ncbi_isolation_source: clinical material

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Eritrea

ncbi_organism_name: Mesorhizobium sp. WSM3876

ncbi_submitter: Curtin University


ncbi_isolation_source: corn silage

ncbi_organism_name: Clostridium zeae

ncbi_submitter: Central Region Agricultural Research Center, NARO


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Brisbane

ncbi_organism_name: Prevotella denticola

ncbi_submitter: University of the Sunshine Coast


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: India: Bihar; Buxar; Buxar

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_submitter: Saudi food and drug authority


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: University of Oklahoma


ncbi_assembly_name: BED

ncbi_country: Australia: Townsville; Queensland

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: BED

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Tunicatimonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Dialister succinatiphilus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Waterburya sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Psychrobacter sp. AOP22-C2-17

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Peribacillus butanolivorans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Dongiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Bacillus mobilis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Vibrio sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: uncultured Sandaracinobacter sp.


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_assembly_name: freshwater MAG --- I-2_bin-103

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Firmicutes bacterium CAG:534

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:534


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: University of Sao Paulo


ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Norway

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Francisellaceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: United Kingdom: Staffordshire

ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: NIAB East Malling Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- YR_bin-2394

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: coral

ncbi_organism_name: Shimia sp. R9_1

ncbi_submitter: University of Konstanz


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_organism_name: Williamsia serinedens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Croatia

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Croatian Veterinary Institute


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Proteus sp. G4444

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4444


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Bacillus sp. FSL M8-0168

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL M8-0168


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Priestia megaterium

ncbi_submitter: BGI


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China:the Shifeng River; Zhejiang Province

ncbi_isolation_source: Sediment around river

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: State Key Laboratory for Diagnosis and Treatment of Infectious Disease


ncbi_organism_name: Acetobacter lovaniensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University of Calgary


ncbi_organism_name: Micrococcus luteus


ncbi_isolation_source: human gut

ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: EMG


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Huangshaping Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Palmer LTER


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_isolation_source: feces

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of New South Wales


ncbi_organism_name: uncultured Sulfitobacter sp.


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: University of Montreal


ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Halomonas sp. AOP25-F1-15

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_isolation_source: human skin

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: NIH/NHGRI


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Rahnella aquatilis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: South China Agricultural University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;x__unclassified Candidatus Marinacidobacterales;s__Candidatus Marinacidobacterales bacterium


ncbi_assembly_name: freshwater MAG --- Umea1_bin-1418

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 23484;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Japan

ncbi_organism_name: Erysipelothrix tonsillarum DSM 14972


ncbi_country: Bolivia: La Paz; Choqueyapu River

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: KYDZM

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Poland: farmland in Jasienowka

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Bialystok


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_submitter: Brighton and Sussex Medical School


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: stool

ncbi_submitter: Pathogenomics Lab/LAU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_assembly_name: IMG-taxon 2654588203 annotated assembly

ncbi_organism_name: Cellulomonas sp. KH9

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. P2518


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Beijing Institute of Genomics Chinese Academy of Sciences


ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Proteus vulgaris

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Rivihabitans pingtungensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S021_01169

ncbi_submitter: Zhejiang University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL074PA1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: ATCC BAA-196

ncbi_submitter: Scientific Center for Anti-infectious Drugs (SCAID)


ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG10331

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: Ghana: Korle-Gonno Lake

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Ghana


ncbi_country: Baltic Sea

ncbi_organism_name: Comamonadaceae bacterium UBA5970

ncbi_submitter: University of Queensland


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Desulfarculales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Ectopseudomonas mendocina

ncbi_submitter: University of Oxford


ncbi_country: France

ncbi_isolation_source: blood culture

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: CHU de Bicetre


ncbi_country: India

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_submitter: Monash University


ncbi_country: USA: Chicago

ncbi_isolation_source: stool from hospitalized pediatric patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Northwestern University


ncbi_organism_name: Variovorax sp. 350MFTsu5.1

ncbi_submitter: University of the Pacific


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bradyrhizobium sp. SZCCHNRI2013

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Human feces

ncbi_organism_name: Eubacterium sp. LMAG:38

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. LMAG:38


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Broiler parent97

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Qinghai-Tibet Plateau

ncbi_organism_name: Lactobacillus xujianguonis

ncbi_submitter: China CDC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_country: Japan: Suruga Bay

ncbi_isolation_source: Deep sea sediments

ncbi_organism_name: Shewanella surugensis

ncbi_submitter: Karolinska Institutet


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Tap water/shower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Australia

ncbi_isolation_source: Carriage sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sydney


ncbi_country: India: DIU

ncbi_isolation_source: intertidal region

ncbi_organism_name: Streptomyces sp. JJ36

ncbi_submitter: CSIR - Central Salt and Marine Chemicals Research Institute


ncbi_isolate: XDR-PA

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Germany

ncbi_isolation_source: German Wadden Sea

ncbi_organism_name: Marinobacter adhaerens HP15

ncbi_submitter: Jacobs University gGmbH


ncbi_country: USA: IA

ncbi_isolation_source: porcine pig intestine small

ncbi_submitter: FDA/CFSAN


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Madurai Kamaraj University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Afghanistan

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: Chile

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universidad Autonoma de Chile


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Leptolinea sp. UBA4782

ncbi_submitter: University of Queensland


ncbi_country: Russia: Rostov-on-Don

ncbi_isolation_source: nasopharyngeal swab

ncbi_submitter: Research Institute for Plague Control


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Elainella sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Pumilibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Betaproteobacteria bacterium UBA1934


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 24

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Pseudomonas machongensis

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CVM_69-4941


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang university


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: SCOPE


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Background Grass (no manure on field)

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: G2 BM LAM CEF 1

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: DOE JGI


ncbi_country: India: Mahatma Gandhi Hospital - Casualty

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0043

ncbi_submitter: Broad Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Serratia sp. BNK-4

ncbi_submitter: National Institute of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. BNK-4


ncbi_organism_name: Bacteroides uniformis


ncbi_submitter: Univerisity of Anbar


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Robiginitalea sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Dickeya ananatis

ncbi_submitter: University of Hawaii


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Coprobacillus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus siamensis

ncbi_submitter: Hue University of Education

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus siamensis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Yersinia pestis

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Helsinki


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Acinetobacter sp. BJFS-203

ncbi_submitter: Jilin Agricultural University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Rossellomorea aquimaris

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Megasphaera sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD16577

ncbi_submitter: Broad Institute


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella sp. K1

ncbi_submitter: UMCG


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacteroides sp. CAG:530

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Newcastle

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Queensland


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2140918011 annotated assembly

ncbi_organism_name: Thermoflexus hugenholtzii JAD2

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Holdemanella sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: human clinical case

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Erysipelothrix sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Syntrophomonas sp. UBA4807


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1808


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microbulbifer pacificus

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: South Korea

ncbi_isolation_source: environment

ncbi_submitter: Korea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus delbrueckii;sb__Lactobacillus delbrueckii subsp. delbrueckii;x__Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012


ncbi_organism_name: Fusobacterium periodonticum

ncbi_submitter: EMG


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Fusobacterium periodonticum 1_1_41FAA

ncbi_submitter: Broad Institute


ncbi_country: France: Bretagne

ncbi_isolation_source: Laying hen

ncbi_organism_name: Mycoplasmopsis pullorum

ncbi_submitter: Anses


ncbi_organism_name: Bradyrhizobium sp. CIR18

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France: Rayret

ncbi_isolation_source: leaves

ncbi_organism_name: Pseudomonas syringae

ncbi_strain_identifiers: RAYR-BL

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: China: Jiangsu

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_assembly_name: Rumen uncultured genome RUG205

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_organism_name: Chlamydia trachomatis L2b/LST

ncbi_submitter: Sanger Institute


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Sri Lanka

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: lake water

ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Centre for Microbiome Research


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: CHU de Bordeaux


ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Haruko Takeyama Lab., Waseda University


ncbi_country: Germany: Freising

ncbi_isolation_source: Cecum content

ncbi_organism_name: Sporofaciens musculi

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ET secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: sputum

ncbi_organism_name: Neisseria sp. HMSC065C04

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environment

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: chicken

ncbi_submitter: University of Zurich


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0406R

ncbi_submitter: Broad Institute


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Coriobacteriales bacterium


ncbi_country: Germany: Espelkamp

ncbi_isolation_source: mineral oil-contaminated soil

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: blood

ncbi_submitter: Washington University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Chile: San Pablo

ncbi_isolation_source: Cankerous wood

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: INIA Rayentue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: United Kingdom: Scotland; Queen Elizabeth University Hospital Glasgow

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Aberdeen


ncbi_country: China: Shanghai

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SHSE001


ncbi_isolation_source: intestine

ncbi_submitter: City University of Hong Kong


ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: Canada: Toronto

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia

ncbi_isolation_source: bloodstream

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Adelaide


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Nanjing University


ncbi_submitter: University of Texas UTHealth


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Wenzhou Medical University


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Candidatus Ventrousia excrementavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Ventrousia;s__Candidatus Ventrousia excrementavium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Bacteroides zoogleoformans

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 2

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Thermoflexus hugenholtzii JAD2

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: Traditional dairy products

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Menzies School of Health Research


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: caecum

ncbi_organism_name: Collinsella sp. An271

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: marine metagenome


ncbi_country: Indian Ocean:TC hydrothermal area

ncbi_isolation_source: Bathymodiolus gill tissue material ENVO [01001393]

ncbi_organism_name: Roseivivax marinus

ncbi_submitter: Resource and Environment Center


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Choladousia;s__Candidatus Choladousia intestinigallinarum


ncbi_country: USA: Ohio

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Actinomadura keratinilytica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian Veterinary Institute


ncbi_assembly_name: IMG-taxon 2695420958 annotated assembly

ncbi_organism_name: Flavobacterium defluvii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Tianjin

ncbi_isolation_source: oil

ncbi_organism_name: Acinetobacter venetianus

ncbi_submitter: Tianjin University of Science and Technology


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: United Kingdom

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Huddersfield


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR31012

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Indonesia: Rambut Island; DKI Jakarta

ncbi_isolation_source: sea sediment

ncbi_organism_name: Cellulosimicrobium marinum

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Streptomyces canus

ncbi_submitter: Technical University of Denmark


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 22

ncbi_submitter: SC


ncbi_isolate: Escherichia coli str. TO73

ncbi_strain_identifiers: Escherichia coli str. TO73

ncbi_submitter: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikro


ncbi_isolation_source: not provided

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Mediterranean Sea

ncbi_isolation_source: DHAB water

ncbi_organism_name: Vibrio bathopelagicus

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Elusimicrobiales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Spain

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: USA: FL; Looe Key

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Phaeobacter sp. CNT1-3

ncbi_submitter: Meyer Microbes Lab


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_country: Pacific Ocean: Western North Pacific Station S

ncbi_isolation_source: seawater

ncbi_organism_name: Tenacibaculum sp. SZ-18

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_country: China: Guangzhou

ncbi_isolation_source: anal swab

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Thailand

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Mahidol University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Oviedo


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_organism_name: Georgenia sp. AZ-5

ncbi_submitter: GFZ German Research Centre for Geosciences


ncbi_country: Madagascar

ncbi_organism_name: Klebsiella sp. 01-662

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1181S

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Loyola University Chicago


ncbi_isolate: Human

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri Shi06HN006

ncbi_submitter: Institute for Communicable Disease Control and Prevention


ncbi_country: Brazil

ncbi_isolation_source: tuberous root

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Murmansk

ncbi_isolation_source: stool sample from patient

ncbi_strain_identifiers: Inaba RND18899

ncbi_submitter: Central Research Institute for Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor;x__Vibrio cholerae O1 biovar El Tor str. Inaba RND18899


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: EMG


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium CG11_big_fil_rev_8_21_14_0_20_34_55


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: URMITE


ncbi_country: India

ncbi_isolation_source: fish intestine

ncbi_submitter: Christian Medical College


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_country: Czech Republic

ncbi_isolation_source: Parsley

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Environmental; Rhizosphere

ncbi_organism_name: Burkholderia anthina

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-1608

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:308

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:308


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces roseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Treponema sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Istanbul University


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Guangdong institue of microbiology


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Rhodococcus sp. SJ-3

ncbi_submitter: Dalian Maritime University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. SJ-3


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: Acidaminococcus intestini


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: University of Alberta


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Halothiobacillaceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_9 depth 9-12 cm

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University of Zurich


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Phycisphaerales bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Roseburia sp.


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium


ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_assembly_name: Rumen uncultured genome RUG495

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium cuniculi

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Morganella morganii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: China: Shenzhen

ncbi_organism_name: Ferrimonas balearica

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Lu'an People's Hospital


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0287

ncbi_submitter: Broad Institute


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- Ki1-2-2m_bin-006

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: Pediatrics Bacteriology, Kyushu univercity


ncbi_organism_name: Curtobacterium citreum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Zipacnadia bacterium

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;c__Candidatus Zipacnadia;x__unclassified Candidatus Zipacnadia;s__Candidatus Zipacnadia bacterium


ncbi_country: India: Kolkata

ncbi_isolation_source: Tips

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Diaphorobacter sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: USA: Dover; Delaware

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Stool

ncbi_submitter: CDC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecalis


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: China

ncbi_isolation_source: clinically healthy animal

ncbi_organism_name: Streptococcus suis 05HAS68

ncbi_submitter: Beijing Institute of Genomics, Chinese Academy of Sciences,


ncbi_country: Germany

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella sp. S147_56019

ncbi_submitter: Zhejiang University


ncbi_submitter: Wroclaw University of Environmental and Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Choleraesuis


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Escherichia coli 908585

ncbi_submitter: Washington University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Hospital surface

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Copenhagen


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: saline water including plankton

ncbi_submitter: Uppsala University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_isolation_source: patient with infection

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: New Zealand:Palmerston North

ncbi_isolation_source: the tolC deletion strain of the Keio collection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Canada: Manitoba

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 1/2a;x__Listeria monocytogenes serotype 1/2a str. 10-0813


ncbi_country: USA: Vermont

ncbi_isolation_source: Cheese rind

ncbi_organism_name: Vibrio casei

ncbi_submitter: Dutton Lab, UCSD


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA7005

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA7005


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: University of Naples Federico II


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Actinotignum sanguinis

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW456-L14

ncbi_submitter: Arkin Lab


ncbi_country: Malaysia: Koala Terenggeanu

ncbi_isolation_source: endotrachial secretion

ncbi_organism_name: Acinetobacter baumannii AC30

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Inserm


ncbi_isolation_source: feces

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-459-O09

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Tang lab


ncbi_assembly_name: Rumen uncultured genome RUG11932

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_organism_name: Chloroherpetonaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Halieaceae bacterium


ncbi_country: Laos

ncbi_isolation_source: chicken stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B293;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Francisella tularensis subsp. novicida

ncbi_submitter: Northern Arizona University


ncbi_country: Norway

ncbi_organism_name: Tenacibaculum maritimum

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital


ncbi_country: France

ncbi_isolation_source: artisanal lactic starter (for Gruyere de Comte cheese making)

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: CIRM-BIA 207

ncbi_submitter: Brigham Young University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Germany

ncbi_isolation_source: Environment; Powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: China: Lanzhou Zoo

ncbi_organism_name: Cellulomonas iranensis

ncbi_submitter: LZU


ncbi_isolation_source: human saliva metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: New Hampshire

ncbi_isolation_source: stool

ncbi_submitter: University of New Hampshire


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: CAU


ncbi_assembly_name: Rumen uncultured genome RUG13710

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: dairy farm; cattle udder

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Enterobacter sp.

ncbi_submitter: EMG


ncbi_strain_identifiers: India 195

ncbi_submitter: ERIC (Enteropathogen Resource Integration Center)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis;x__Yersinia pestis subsp. pestis bv. Orientalis;x__Yersinia pestis biovar Orientalis str. India 195


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Salmonella sp. K17285

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: California

ncbi_organism_name: Streptomyces sp. SLBN-134

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: porcine gastric mucosa

ncbi_organism_name: Helicobacter suis HS5

ncbi_submitter: Ghent University, Faculty of Veterinary Medicine, Department of Pathology, Bacteriology and Avian Diseases


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Sichuan

ncbi_isolation_source: feces

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: Denmark

ncbi_submitter: Hvidovre Hospital - University of Copenhagen


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Rhodothermaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Candidatus Alistipes pullicola

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: soil

ncbi_organism_name: Nocardioides luteus

ncbi_strain_identifiers: BAFB

ncbi_submitter: UDRI


ncbi_organism_name: Legionella sp. W05-934-2

ncbi_submitter: Institut Pasteur


ncbi_assembly_name: Rumen uncultured genome RUG14092

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China

ncbi_isolation_source: slaughterhouse

ncbi_organism_name: Salmonella sp. YT2-4-2

ncbi_submitter: Yangzhou University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Vaginal

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: University of the Sunshine Coast


ncbi_country: Bangladesh

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Russia: Astrakhan

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Sulfurimonas sp. SAG-AH-194-C20

ncbi_submitter: The Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Weissella confusa

ncbi_submitter: UMass Amherst


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_isolation_source: beef

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_submitter: INRAE


ncbi_country: Brazil

ncbi_isolation_source: Cake

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudarthrobacter defluvii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: BAL

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Peru: Puno

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Fujian

ncbi_isolation_source: 2224E medium

ncbi_organism_name: Psychrobacter sp. Ps2

ncbi_submitter: Xiamen University


ncbi_country: United Kingdom

ncbi_isolation_source: plant

ncbi_organism_name: Pectobacterium atrosepticum

ncbi_submitter: Institute for integrative biology of the cell


ncbi_organism_name: uncultured SAR92 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Cellvibrionales;f__Porticoccaceae;x__unclassified Porticoccaceae;x__SAR92 clade;x__environmental samples;s__uncultured SAR92 cluster bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Alexandria University


ncbi_country: Hong Kong

ncbi_isolation_source: Stool

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Water

ncbi_organism_name: Methylobacterium organophilum

ncbi_submitter: University of Alabama in Huntsville


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFOXYB2_FULL_41_18


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Senegal

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gut

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Staphylococcus aureus LCT-SA67

ncbi_submitter: GBI


ncbi_country: China: Pearl River Estuary; Guangdong

ncbi_isolation_source: sediment

ncbi_organism_name: Aliiroseovarius sp. PrR006

ncbi_submitter: Shantou University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: South Korea: Gochang

ncbi_isolation_source: Gut of Cyclina sinensis

ncbi_organism_name: Flavobacterium cyclinae

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Mycobacterium shottsii

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Unidad de Genomica y Bioinformatica


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: blood sample from patient with bacteremia

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CIG1750


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Colon

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__environmental samples;s__uncultured candidatus Brocadiaceae bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Prolixibacteraceae bacterium


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Moraxella marmotae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_organism_name: uncultured cyanobacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_organism_name: Alistipes sp.


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Vibrio sp. zbq_6

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: uncultured Schleiferiaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Pacific Ocean

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium UBA5573

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA5573


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Australia: Great Barrier Reef


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Genetics and Animal Breeding, Chattogram Veterinary and Animal Sciences University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics