ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: AAFC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_level: Scaffold

ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


gtdb_representative: t

ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- E-2_bin-357

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Xenorhabdus bovienii str. puntauvense

ncbi_strain_identifiers: puntauvense

ncbi_submitter: UWM


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_level: Chromosome

ncbi_country: China: Wuxi

ncbi_genome_representation: partial

ncbi_isolation_source: dung from Mashan dairy farms

ncbi_organism_name: Clostridium bovifaecis

ncbi_strain_identifiers: BXX

ncbi_submitter: jiangnan university


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Hengyang

ncbi_isolation_source: urine

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_assembly_level: Complete Genome

ncbi_country: Antarctica: Prydz Bay

ncbi_isolation_source: sediments

ncbi_organism_name: Plantibacter sp. PA-3-X8

ncbi_submitter: Polar Research Institute of China


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: VHProbi OF10

ncbi_submitter: Nutrition &Health Technology Center


ncbi_country: China: Shenzhen

ncbi_isolation_source: pork

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_country: USA: Montana; Missoula

ncbi_isolate: SOD

ncbi_organism_name: Candidatus Sodalis endolongispinus

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: SOD

ncbi_submitter: UNIVERSITY OF SOUTH BOHEMIA


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta; Pretzlaff Pond

ncbi_isolation_source: non-axenic culture from freshwater

ncbi_submitter: Universite de Montreal


ncbi_country: USA: Texas

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: University of Chicago


ncbi_country: Germany

ncbi_submitter: Broad Institute


ncbi_organism_name: Pontiella sp.

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sinomonas sp. G460-2

ncbi_submitter: Institute of Agricultural Resources and Environment, Guangdong Academy of Agricultural Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Vibrio nigripulchritudo MADA3029

ncbi_submitter: Genoscope CEA


ncbi_isolation_source: tissue

ncbi_organism_name: Lacticaseibacillus casei

ncbi_submitter: Bioprox


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Brenneria sp. L3-3Z

ncbi_submitter: Chinese academy of forestry


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Shandong province

ncbi_isolation_source: enrichment culture from petroleum-contaminated soil

ncbi_organism_name: Paracoccus sp. pheM1

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. pheM1


ncbi_isolate: CON1 bin18

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_strain_identifiers: CON1 bin18

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Solobacterium sp.


ncbi_organism_name: Pseudomonas sp. CBSPAW29

ncbi_submitter: Umea university


ncbi_assembly_name: De novo assembly of KCRI isolate R0008_372

ncbi_isolation_source: wound swab sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Vellore

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Streptomyces sp. NPDC000348

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Oman

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Sultan Qaboos University


ncbi_country: Australia: Western Australia

ncbi_isolation_source: farmed fish

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Mycolicibacterium holsaticum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Beijing

ncbi_isolation_source: bile

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinhua Hospital Affiliated to Shanghai Jiaotong University School of Medicine


ncbi_country: South Korea: Seoul

ncbi_isolation_source: wastewater plant

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: Korea university


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: Pakistan

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: MUST

ncbi_submitter: Mirpur Univerisity of Science and Technology (MUST), Mirpur-10250 (AJK)


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: Decomposed wood of Fagus sylvatica; >38 years decomposition

ncbi_organism_name: Variovorax sp. dw_954

ncbi_submitter: Czech Academy of Science


ncbi_isolation_source: fermented dairy product

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_assembly_name: freshwater MAG --- Umea_bin-01682

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Agromyces bauzanensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark: Hvidovre

ncbi_submitter: NIZO food research


ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_country: USA

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Johns Hopkins Bloomberg School of Public Health


ncbi_organism_name: Curvibacter sp. AEP1-3

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Zhangjiakou

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Jiahui International Hospital


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Oklahoma State University


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Collinsella sp.


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: University of Southern California

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella sp. R34

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Rhodococcoides fascians

ncbi_submitter: Iowa State University


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 1855

ncbi_submitter: Ghent University


ncbi_organism_name: Pseudomonas syringae pv. coryli

ncbi_submitter: Tecnologico de Monterrey

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas syringae pv. coryli


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_assembly_name: Rumen uncultured genome RUG680

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21305


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Orientia tsutsugamushi

ncbi_submitter: Christian Medical College


ncbi_submitter: University of Sao Paulo


ncbi_country: Brazil: Minas_Gerais_1

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE93

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: CSIR-National Institute of Oceanography(CSIR-NIO), Regional Centre, Mumbai, India


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Antarctica: Robinson Ridge

ncbi_isolation_source: pooled data from three different soil samples

ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: nstitute of Tibetan Plateau Research, Chinese Academy of Sciences


ncbi_isolation_source: vinegar

ncbi_organism_name: Novacetimonas hansenii

ncbi_submitter: Lodz University of Technology


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. R-M63

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Glutamicibacter mishrai

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Dubosiella newyorkensis


ncbi_country: Spain

ncbi_isolation_source: water

ncbi_organism_name: Salinivibrio sp. ML198

ncbi_submitter: Universidad de Sevilla


ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium tibiigranuli

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Propionibacterium sp.

ncbi_submitter: EMG


ncbi_country: China: South China Sea

ncbi_isolation_source: fluid

ncbi_organism_name: Psychromonas sp.

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Ethiopia: Wollo

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: J.Craig Venter Institute


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: SD

ncbi_isolation_source: ileum (Sus scrofa scrofa)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Rumen uncultured genome RUG14931

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: rectal swab

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculty of Public Health


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-4-18

ncbi_submitter: Curtin University


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense genomovar finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_assembly_name: Rumen uncultured genome RUG13928


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia: Moscow

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


gtdb_type_species_of_genus: t

ncbi_country: South Korea

ncbi_organism_name: Paralcaligenes ureilyticus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anaerolinea sp.

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_organism_name: Phytobacter sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia pseudomallei MSHR5858

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: marine environment

ncbi_submitter: IMR


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: USA: Boston; MA

ncbi_organism_name: Enterococcus faecalis EnGen0244

ncbi_submitter: Broad Institute


ncbi_country: China: Shanghai

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Xiamen University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: EMG


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Illinois

ncbi_organism_name: Francisella tularensis

ncbi_strain_identifiers: FTZ


ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Loyola University Chicago


ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_assembly_name: freshwater MAG --- MJ110927B_bin-745

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella sonnei

ncbi_submitter: icddr,b


ncbi_country: China

ncbi_isolation_source: mushroom farm

ncbi_organism_name: Ewingella americana

ncbi_submitter: Jilin Agricultural University


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: CAU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: EPFL


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Serratia sp. CY54039

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY54039


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Terracidiphilus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma Metropolitana Unidad Xochimilco


ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium UBA2815

ncbi_submitter: University of Queensland


ncbi_country: Hungary

ncbi_isolation_source: caecum domestic rabbit

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Poultry

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: infant botulism case

ncbi_organism_name: Clostridium botulinum Bf

ncbi_strain_identifiers: Bf

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_submitter: ISTITUTO ZOOPROFILATTICO SPERIMENTALE DELLA PUGLIA E DELLA BASILICATA


ncbi_organism_name: Lactococcus sp. FSL W8-0209

ncbi_submitter: Penn State


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_country: South Africa

ncbi_isolation_source: Fresh Produce

ncbi_strain_identifiers: UPMP 1515

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: In-house environment

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Victivallis sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 53


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: rat gut

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_country: China: Beijing Botanical Garden

ncbi_isolation_source: Begonia semperflorens

ncbi_organism_name: Paenibacillus jilunlii

ncbi_submitter: UFRGS


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Caldicoprobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: ProteonPharmaceuticals


ncbi_organism_name: Amycolatopsis sp. H20-H5

ncbi_submitter: Yildiz Technical University


ncbi_organism_name: Halomonas sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Synechococcus sp. SB0667_bin_8

ncbi_submitter: University of Queensland


ncbi_country: Japan: Japanese Sea

ncbi_isolation_source: Sea water

ncbi_organism_name: Acinetobacter venetianus

ncbi_submitter: University of Florence


ncbi_isolation_source: forest soil

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Desulfobulbales bacterium


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University College Cork


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Switzerland: Geneva

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Geneva University Hospital


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Actinotignum sanguinis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Jilin Agricultural University


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_country: Australia: Yilgarn Craton

ncbi_isolation_source: sediment

ncbi_organism_name: Salinisphaeraceae bacterium UBA4764


ncbi_country: Brazil: Arroio do Sal

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Federal University of Health Sciences of Porto Alegre


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Antwerp


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Singapore

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Rumen uncultured genome RUG11669

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Ukraine

ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bifidobacterium lemurum

ncbi_submitter: Division of Epigenomics and Development, Department of Molecular Genetics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Sulfidic spring near Regensburg

ncbi_isolation_source: biofilm from sulfidic groundwater

ncbi_organism_name: Methylacidiphilum sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy: d__Bacteria;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);x__unclassified Methylacidiphilum;s__Methylacidiphilum sp.


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_assembly_name: Rumen uncultured genome RUG13931

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus cereus

ncbi_submitter: TU Muenchen


ncbi_organism_name: uncultured Rhodobiaceae bacterium


ncbi_isolate: SPRUCE 643

ncbi_organism_name: Polyangiaceae bacterium

ncbi_strain_identifiers: SPRUCE 643

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: HRSE 20

ncbi_submitter: Chung-Ang University


ncbi_country: USA: Hartford; CT

ncbi_isolation_source: Neck/Axilla

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Pakistan: Burewala; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. Bo_13

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: City University of Hong Kong


ncbi_country: Japan

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Sphingomonadaceae bacterium 3R27C6

ncbi_submitter: University of Trento


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_assembly_name: PAIRED

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MASINDE MULIRO UNIVERSITY OF SCIENCE AND TECHNOLOGY


ncbi_organism_name: Streptomyces gamaensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Chthonomonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Cysteiniphilum litorale

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Chinese Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The British University in Egypt


ncbi_submitter: Sam Houston State University


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Actinoplanes sp. CA-054009

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Arthrobacter psychrochitiniphilus


ncbi_isolation_source: marine

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Niallia circulans

ncbi_submitter: Bielefeld University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: fecal sample

ncbi_submitter: Kaleido Biosciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Planktotalea sp.

ncbi_submitter: German Federation for Biological Data


ncbi_assembly_name: freshwater MAG --- VK1_bin-1589

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: Faeces


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: BAL

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Tan-cheon wastewater plant

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Korea university


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Manitoba


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_country: China

ncbi_isolation_source: secretion

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: INRA


ncbi_country: South Africa: KwaZulu-Natal

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_submitter: Adelaide Medical School


ncbi_country: India: Pune

ncbi_isolation_source: stool sample from healthy individual

ncbi_organism_name: Clostridium sp. BL8

ncbi_submitter: National Centre for Cell Science


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Chamaesiphon sp. OTE_78_metabat_374

ncbi_submitter: EPFL


ncbi_country: Taiwan: Taichung city

ncbi_isolation_source: Rhizosphere

ncbi_organism_name: Bacillus nitratireducens

ncbi_submitter: National Chung Hsing University and Academia Sinica


ncbi_organism_name: Streptomyces sp. NBC_01257

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Roseomonas mucosa

ncbi_submitter: SC


ncbi_organism_name: Buchnera aphidicola (Ceratovacuna keduensis)

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_isolation_source: Algae

ncbi_submitter: University of Liverpool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Candidatus Megaera;x__unclassified Candidatus Megaera;s__Candidatus Megaera endosymbiont of Mesostigma viride


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 60:r:e,n,x,z15


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Streptomyces sp. NPDC005271

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: Spain

ncbi_isolation_source: Exudate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: HOSPITAL UNIVERSITARIO REINA SOFIA DE CORDOBA


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Korea: Cheonju

ncbi_isolate: sequencing

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Catholic university of Korea


ncbi_country: China: Jilin

ncbi_isolation_source: soil

ncbi_organism_name: Streptomonospora nanhaiensis

ncbi_submitter: School of life science


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Fusobacterium periodonticum

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_S_4

ncbi_submitter: Universite de Sherbrooke

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;x__environmental samples;s__uncultured Candidatus Methylacidiphilales bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Waterloo


ncbi_country: Canada: Edmonton

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: MAMI


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: Acutalibacter sp. 1XD8-36

ncbi_submitter: Chinese Academy of Science


ncbi_isolation_source: sputum

ncbi_submitter: Southwest Medical University


ncbi_country: Germany

ncbi_isolation_source: cloacal swab

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: bark

ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: DNASense ApS


ncbi_country: Viet Nam:Binh Phuoc Province

ncbi_isolation_source: stem

ncbi_organism_name: Acetobacter sacchari

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_isolation_source: mutton

ncbi_submitter: Nankai University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Complejo Hospitalario de Pontevedra (Pontevedra)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_submitter: University College Cork


ncbi_country: France

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 22846

ncbi_submitter: Broad Institute


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Dental plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Brachyspira pilosicoli WesB

ncbi_strain_identifiers: WesB

ncbi_submitter: Wellcome Trust Sanger Insititute


ncbi_organism_name: Streptomyces vinaceusdrappus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Nevada; Las Vegas

ncbi_isolation_source: activated sludge from a Las Vegas sewage treatment facility

ncbi_organism_name: Caulobacter mirabilis

ncbi_strain_identifiers: FWC 38

ncbi_submitter: The University of Chicago


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T32086


ncbi_organism_name: uncultured Hungatella sp.


ncbi_isolation_source: stool; GI tract

ncbi_submitter: WUGSC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes;s__Anaerostipes hadrus;x__Anaerostipes hadrus ATCC 29173 = JCM 17467


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Limnospira sp. PMC 1280.21

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Ruminococcus callidus


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__environmental samples;s__uncultured Candidatus Cryptobacteroides sp.


ncbi_organism_name: Ochrobactrum quorumnocens

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Olivibacter sp.

ncbi_submitter: University of Fribourg


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: Noosa River

ncbi_organism_name: Acidimicrobiia bacterium UBA6912

ncbi_submitter: University of Queensland


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Candidatus Blautia avistercoris

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome


ncbi_country: South Africa: Klerksdorp

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: University of Exeter

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: CAU


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0013

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Sudan

ncbi_isolation_source: End stage renal failure

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: King Abdulaziz University


ncbi_country: USA

ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center


ncbi_isolation_source: Distal colon


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Italy

ncbi_submitter: U.S. Food and Drug Administration


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-4977

ncbi_organism_name: uncultured beta proteobacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus cremoris;sb__Lactococcus cremoris subsp. cremoris;x__Lactococcus cremoris subsp. cremoris A76


ncbi_country: United Kingdom: Kingston

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: Parasphingorhabdus sp.


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A42

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Paenibacillus lautus

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: bovine cheese blue

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: Caecum


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: NCTC 8720

ncbi_submitter: NIZO food research


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: Netherlands: Utrecht

ncbi_submitter: TU Delft


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bologna


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: DTA

ncbi_submitter: Charles University


ncbi_country: China: NanJing

ncbi_isolation_source: soil

ncbi_organism_name: Niastella caeni

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Wuxi

ncbi_isolation_source: alveolar washing liquid

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_isolation_source: ocean

ncbi_organism_name: Prochlorococcus marinus XMU1414

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: Puerto Rico: SAN SEBASTIAN

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Northern Arizona University


ncbi_country: South Africa

ncbi_organism_name: Pantoea allii

ncbi_submitter: University of Georgia


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Velvet for Version 1.2.03 of the Lactobacillus plantarum genome

ncbi_country: China: Yimen; Yunnan Province

ncbi_isolation_source: fermented soybean

ncbi_organism_name: Lactiplantibacillus plantarum 4_3

ncbi_submitter: Kunming University of Science and Technology


ncbi_country: USA: San Mateo; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Aminobacterium sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Erwinia persicina

ncbi_submitter: Macquarie University


ncbi_country: USA: WI; Brown

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Michigan


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG14670

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-221

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_strain_identifiers: new MAG-221

ncbi_submitter: Micoorganism


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_country: Indian Ocean

ncbi_organism_name: Pseudoalteromonas sp. GABNS16H

ncbi_submitter: Michigan Technological University


ncbi_organism_name: Litorivivens sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Austria: Krems

ncbi_isolation_source: Wound swab

ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: AGES


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: South China Sea

ncbi_isolation_source: surface seawater in South China Sea

ncbi_organism_name: Neopusillimonas maritima

ncbi_submitter: Key Laboratory of Marine Biogenetic Resources State of Oceanic Administration


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: Germany: Hesse; Gross-Gerau

ncbi_isolation_source: rectal swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Paludibacter propionicigenes

ncbi_submitter: University Duisburg-Essen


ncbi_country: South Korea: Jinju

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: HUONS


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. Occ3-1

ncbi_submitter: University of Texas at Austin


ncbi_country: Japan: Aichi

ncbi_isolation_source: rice vinegar mash from surface acetic acid fermentation in a vinegar factory

ncbi_organism_name: Acetobacter aceti 1023

ncbi_submitter: Purdue University


ncbi_organism_name: Opitutaceae bacterium


ncbi_organism_name: Leuconostoc mesenteroides


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Stellaceae bacterium


ncbi_organism_name: Pontiella sp.

ncbi_submitter: Tsinghua University


ncbi_isolation_source: caecum

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: India: Vadodara

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Szechuan

ncbi_isolation_source: pit mud of baijiu fermentation

ncbi_organism_name: Bacillus sp. REN10

ncbi_submitter: Beijing Technology and Business University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. REN10


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Bielefeld University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Eoetvoesiella caeni

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Doenjang(Soybean paste)

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Jeotgalicoccus coquinae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: University of Parma


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Salmonella sp. 741265066_PST

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: uncultured Thalassobaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;x__unclassified Candidatus Marinacidobacterales;s__Candidatus Marinacidobacterales bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Planctomycetales bacterium


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_country: Sudan

ncbi_isolation_source: Gergoush (Sudanese Bread snack) primary fermentation step

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Chr-Hansen


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: blood

ncbi_organism_name: Morganella morganii

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: Lions Bay

ncbi_isolation_source: Ixodes pacificus

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Israel

ncbi_isolation_source: rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: tel-aviv sourasky medical center


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: South China Agricultural University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides intestinipullorum


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University College Dublin


ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human feces metagenome


ncbi_country: South Africa

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: The University of Arizona


ncbi_country: Canada: Alberta

ncbi_isolation_source: Beef carcass post-hide removal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa605

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0911

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces griseoluteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Coxiellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Roseburia sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: VA

ncbi_isolation_source: normal skin of the right arm

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: IL

ncbi_isolation_source: organic soy

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_strain_identifiers: ATCC BAA1716;MGCS10565

ncbi_submitter: The Methodist Hospital Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus;x__Streptococcus equi subsp. zooepidemicus MGCS10565


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Paenibacillus sp. Root444D2

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Italy

ncbi_submitter: University of Bologna


ncbi_country: Ghana: Nima Market; Accra

ncbi_isolation_source: wagashi (unripened soft cheese)

ncbi_strain_identifiers: NRWCIA

ncbi_submitter: Alborada Research Fund

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Legon


ncbi_organism_name: Treponema denticola


ncbi_country: Spain: Rapita

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha lotti

ncbi_submitter: University of California, Davis


ncbi_country: USA: TX

ncbi_isolation_source: feces (Sus scrofa)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_assembly_name: IMG-taxon 2675903028 annotated assembly

ncbi_organism_name: Methylocapsa palsarum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Sponge: Chondrosia reniformis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Mucilaginibacter sp.


ncbi_country: Turkey: Selim

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-3236

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium


ncbi_country: Italy: Bresso; MI

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA: Ohio; Cleveland

ncbi_isolation_source: patient sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_strain_identifiers: PC184 Mulks

ncbi_submitter: Michigan State University


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acidobacteriota bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Germany

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Lactobacillus hominis


ncbi_country: Mexico: Churince hydrological system; Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment from the Churince hydrological system

ncbi_organism_name: Micrococcus sp. CH7

ncbi_submitter: CINVESTAV-Langebio


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptomyces griseus


ncbi_assembly_name: Rumen uncultured genome RUG172

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_assembly_name: IMG-taxon 2718218509 annotated assembly

ncbi_organism_name: Pseudidiomarina planktonica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: South Korea: Seoul

ncbi_isolation_source: hospital

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Seoul Metropolitan Government Research Institute of Public Health and Environment


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_organism_name: Streptomyces sp. NPDC001536

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_isolate: SPRUCE 691

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 691

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: USA

ncbi_isolation_source: flower

ncbi_organism_name: Streptomyces sp. SID8375

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Actinomyces graevenitzii

ncbi_submitter: EMG


ncbi_country: India: Pozhikarai near Kanyakumari

ncbi_isolation_source: seawater

ncbi_organism_name: Streptomyces sp. ICN903

ncbi_submitter: Manonmaniam Sundaranar University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NC

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces from Phil the wombat

ncbi_organism_name: Succinivibrio sp. Phil9

ncbi_submitter: University of Queensland


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bulleidia sp. HCP3S3_C9

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Lactobacillus amylovorus


ncbi_organism_name: Streptomyces sp. NPDC058221

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Filomicrobium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Flavobacterium sp. LB1P62

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Aphodousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Sutterellaceae;x__Sutterellaceae incertae sedis;g__Candidatus Aphodousia;x__unclassified Candidatus Aphodousia;s__Candidatus Aphodousia sp.


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Haliscomenobacter sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Devosia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. BCW_6873

ncbi_submitter: University of California at Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 3 20 to 25cm

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_country: Canada: British Colombia

ncbi_isolation_source: wound

ncbi_organism_name: Vandammella animalimorsus

ncbi_submitter: National Microbiology Laboratory/ Public Health Agency of Canada


ncbi_organism_name: Stellaceae bacterium


ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Paracholeplasma morum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_submitter: Ausgem


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: Algeria

ncbi_isolation_source: ready-to-eat foods

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Sciences of Food Production (ISPA)


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sheep fecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Pseudomonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: New Zealand

ncbi_isolation_source: New Zealand cheese

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of California Davis


ncbi_country: Mongolia: Lake Khotonyn Nur

ncbi_isolation_source: saline lake

ncbi_organism_name: Halorhodospira sp. M38

ncbi_submitter: Bellevue University


ncbi_country: France: Bordeaux

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Nostoc sp. CMAA1605

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Pyrinomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Alistipes sp. 56_11


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL020186

ncbi_submitter: Broad Institute


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Korea

ncbi_isolation_source: Soil from a ginseng field

ncbi_organism_name: Pseudoxanthomonas yeongjuensis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Escherichia coli O26

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Sodaliphilus limicaballi

ncbi_submitter: Quadram Institute


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Shenzhen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Southern University of Science and Technology


ncbi_country: India

ncbi_isolation_source: Blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Stenotrophomonas sp.


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: lake water

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Ancrocorticia sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: Nizhny Novgorod

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Micr


ncbi_country: China

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S132

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S132


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: anaerobic digester filtrate obtained from the belt filter press of the CVWRF wastewater treatment plant

ncbi_organism_name: Polyangiaceae bacterium UTPRO1

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: ATCC 2

ncbi_submitter: American Type Culture Collection (ATCC)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: CNRS UMR6197


ncbi_organism_name: Streptomyces sp. NPDC051662

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: New Zealand: Te Puke

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_country: Nigeria: Lagos; Lekki Beach

ncbi_isolation_source: shoreline saltwater

ncbi_organism_name: Vibrio vulnificus

ncbi_strain_identifiers: LEK 164

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ GmbH


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Colombia: Valle del Cauca

ncbi_organism_name: Klebsiella sp. I-Nf8

ncbi_submitter: Georgia Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Lamb; fecal

ncbi_organism_name: Aliarcobacter skirrowii CCUG 10374

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacillus sp. FSL K6-0994

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-0994


ncbi_isolation_source: liver

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_submitter: Zeta Biosciences


ncbi_country: Canada: Lacombe

ncbi_organism_name: Campylobacter sp.

ncbi_submitter: AAFC


ncbi_organism_name: Veillonella parvula


ncbi_organism_name: Serratia marcescens

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: mutton

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Canada

ncbi_isolation_source: Stomach; Antrum

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Oligoflexales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter sp. BT770

ncbi_submitter: Seoul Women's university


ncbi_country: China: Linyi

ncbi_isolation_source: root endophyte

ncbi_organism_name: Lysinibacillus sp. GbtcB16

ncbi_submitter: Central South University


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_organism_name: uncultured Muribaculaceae bacterium