ncbi_isolation_source: pork

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Yangzhou University


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Russia: Kamchatka; Uzon Caldera

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: thermophilic sediment from neutral hot spring

ncbi_organism_name: Halothiobacillus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_assembly_level: Contig

ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


gtdb_type_species_of_genus: t

ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Amniculibacterium aquaticum

ncbi_refseq_category: reference genome

ncbi_submitter: National Kaohsiung University of Science and Technology

ncbi_type_material_designation: assembly from type material


gtdb_representative: f

ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Faecalicatena contorta

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muriicola sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: Neobacillus cucumis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Janthinobacterium sp. LB2P49

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: AIMST University


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. s33260

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Blastocatellia bacterium


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Michigan State University


ncbi_assembly_name: freshwater MAG --- Umea_bin-07451

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: USA: Redwood City; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Limibaculum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: CAU


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: NanJing University


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: alternating anaerobic and microareobic bioreactor

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: human feces metagenome


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_submitter: University of Southern California


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Guide

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Bifidobacterium sp. B4079

ncbi_submitter: China Agricultural University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Clostridium perfringens A

ncbi_strain_identifiers: SNUVG

ncbi_submitter: Seoul National University School of Veterinary Medicine


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: EPFL


ncbi_submitter: University of central Florida


ncbi_assembly_level: Chromosome

ncbi_country: Netherlands

ncbi_isolation_source: ileostomy effluent evening sample obtained from a 79 year-old male ileostomist plated on Mitis-salivarius agar

ncbi_organism_name: Streptococcus sp. HSISM1

ncbi_submitter: Top Institute Food and Nutrition (TIFN)


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Deinococcus sp. QL22

ncbi_submitter: Northwest Institute of Eco-Environment and Resources Chinese Academy of Sciences


ncbi_country: Japan: Hanamuro river

ncbi_organism_name: Roseateles depolymerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Ocean university of China


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Mitsuokella multacida

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Streptomyces sp. NPDC006476

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: France

ncbi_isolation_source: pasture gramineae

ncbi_organism_name: Pediococcus acidilactici MA18/5M

ncbi_submitter: Institut Rosell Lallemand Inc.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Pediococcus;x__Pediococcus acidilactici group;s__Pediococcus acidilactici;x__Pediococcus acidilactici MA18/5M


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_isolation_source: intestinal content

ncbi_organism_name: Rikenella sp.

ncbi_submitter: ChinaCDC


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-280

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chthonomonas sp.

ncbi_strain_identifiers: new MAG-280

ncbi_submitter: Micoorganism


ncbi_country: Sweden

ncbi_isolation_source: Urinary Tract Catheters

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: NOMORFILM


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Jiangxi

ncbi_organism_name: Paenibacillus solani

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Bangladesh

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: icddrb


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Vulcanimicrobiaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: Electrocardiogram clip

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Southern University of Science and Technology


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Dictyoglomota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_country: China: Sichuan; Chengdu

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Oscillatoria sp. CTOTU28216

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: gut content

ncbi_organism_name: Escherichia coli

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Ningxia

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: South Korea: Yong-in

ncbi_isolation_source: tree

ncbi_organism_name: Mucilaginibacter ginkgonis

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Oribacterium parvum

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptomyces sp. NPDC050528

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Roseobacter sp. HKCCA2468

ncbi_submitter: Shenzhen Research Institute, The Chinese University of Hong Kong


ncbi_country: Germany

ncbi_organism_name: Staphylococcus aureus 12S00972

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Robinsoniella sp.

ncbi_submitter: EMG


ncbi_isolation_source: fastidious anaerobic agar

ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_country: China

ncbi_isolation_source: seawater

ncbi_organism_name: Hyphomonas sp. GM-8P

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Xiamen University


ncbi_country: Canada: Ontario

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Acinetobacter gerneri

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Segatella copri

ncbi_submitter: China CDC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium RIFCSPHIGHO2_02_FULL_50_42


ncbi_country: Pakistan

ncbi_isolation_source: blood

ncbi_submitter: AWKUM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: Rumen uncultured genome RUG10785

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Ferrimicrobium acidiphilum


ncbi_country: Kuwait

ncbi_isolation_source: Biopsy; gastric antrum

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Hyderabad


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Leyella stercorea

ncbi_submitter: University of Queensland


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Copenhagen


ncbi_country: China: Guangxi; Dachang

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: water

ncbi_organism_name: Mycobacteroides franklinii

ncbi_submitter: Uppsala University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Paludibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Sphingobium sp. HT1-2

ncbi_submitter: University of Washington


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Salegentibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Nocardioidaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ellagibacter isourolithinifaciens


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: International Space Station

ncbi_isolation_source: Dining table Node 1

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA

ncbi_organism_name: Mesorhizobium sp. NZP2234

ncbi_submitter: University of Otago


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tongji University


ncbi_country: China: Wuhan

ncbi_isolation_source: earth

ncbi_organism_name: Actinomadura sp. J1-007

ncbi_submitter: Ministry of Education and Wuhan University School of Pharmaceutical Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA:California; Northridge

ncbi_organism_name: Akkermansia muciniphila

ncbi_strain_identifiers: CSUN-56 AmIII

ncbi_submitter: California State University, Northridge


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Microbacterium sp. Leaf159

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Australia

ncbi_isolation_source: legume nodule

ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation (CSIRO)


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Deltaproteobacteria bacterium UBA6106

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA6106


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa C3719

ncbi_submitter: Broad Institute


ncbi_organism_name: Waltera sp.

ncbi_submitter: UIUC


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Florida

ncbi_organism_name: Microbulbifer sp. VAAF005

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: nasal swab

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0165R


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Mesoaciditoga lauensis

ncbi_submitter: Portland State University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Prevotella jejuni


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_assembly_name: freshwater MAG --- Umea_bin-02646

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: Providencia rettgeri


ncbi_country: USA: Windsor; CT

ncbi_isolation_source: tobacco

ncbi_submitter: University of Miami

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Buchnera;s__Buchnera aphidicola;x__Buchnera aphidicola (Myzus persicae);x__Buchnera aphidicola str. W106 (Myzus persicae)


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W42929


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Beijing

ncbi_isolation_source: Chinese Academy of Agricultural Sciences

ncbi_organism_name: Bacillus paralicheniformis


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: East China Normal University


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Histophilus somni

ncbi_strain_identifiers: 3758HS;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College Dublin


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Coraliomargaritaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_country: USA: MN

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Yersinia intermedia

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Hangzhou

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: USA: Atlanta; GA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Emory University


ncbi_country: China: Jiangxi; Dexing

ncbi_organism_name: Rhodospirillales bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Paenarthrobacter ureafaciens

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV128

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Listeria cossartiae subsp. cayugensis

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cayugensis


ncbi_country: Lebanon: Beirut

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella oxytoca


ncbi_country: Germany

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Ochrobactrum sp. EEELCW01

ncbi_submitter: Central South University


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0555

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Synechococcus sp. R55.8

ncbi_submitter: University of Montana


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0074

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Asturias

ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Cornell University


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Zhejiang university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Uppsala University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Lachnobacterium bovis


ncbi_country: India: Kerala

ncbi_isolation_source: shrimp

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Streptomyces canus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Salmonella sp. NW25

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Desulfobacca sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Collection de l'Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Candidatus Rariloculaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Rariloculales;f__Candidatus Rariloculaceae;x__unclassified Candidatus Rariloculaceae;s__Candidatus Rariloculaceae bacterium


ncbi_organism_name: Streptomyces niveus


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: Lachnospira pectinoschiza

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Spongiibacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Algibacter sp.

ncbi_submitter: Quanzhou Normal University


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Actinomyces viscosus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: liver

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL059PA2

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Micromonospora tulbaghiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from dieased colony 2

ncbi_organism_name: Marinisporobacter sp.

ncbi_submitter: University of Florida


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: USA: California

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter vicugnae

ncbi_submitter: USDA


ncbi_country: USA

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IA

ncbi_submitter: Washington State Department of Health Public Health Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: rumen content from lactating cow

ncbi_organism_name: Xylanibacter ruminicola

ncbi_submitter: zhejiang university


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Thailand

ncbi_isolation_source: fermented tea leaves (miang)

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus camelliae;x__Lacticaseibacillus camelliae DSM 22697 = JCM 13995


ncbi_country: USA: Utqiagvik; Alaska CRREL Permafrost Tunnel

ncbi_isolation_source: Cryopeg brine water

ncbi_organism_name: Marinobacter sp. M1C

ncbi_submitter: University of Washington


ncbi_organism_name: Mycobacterium montefiorense

ncbi_submitter: Laboratory of Aquatic Medicine School of Veterinary Medicine, Nippon Veterinary and Life Science University


ncbi_country: China: Guangzhou

ncbi_isolation_source: farmer s market

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_country: China: Gansu

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis M13255

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Streptomyces sp. ISL-66

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: China

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heidelberg University Hospital


ncbi_assembly_name: PMEN

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: USA: Baltimore

ncbi_isolation_source: murine

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Maryland


ncbi_isolation_source: other

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: CDC


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital,School of Medicine,Zhejiang University


ncbi_organism_name: Atlantibacter hermannii


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-2856

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylocystaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acidocella sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: China: Gungdong

ncbi_isolation_source: blood

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Norway

ncbi_isolation_source: fish gut

ncbi_organism_name: Shewanella baltica

ncbi_submitter: Institute of Marine Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Quebec

ncbi_isolation_source: Animal - Chicken-Egg

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA19970769


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Thermodesulfobacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_country: Russia: Novosibirsk

ncbi_isolation_source: bone biopsy

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Institute of Chemical Biology and Fundamental Medicine (ICBFM SB RAS)


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_country: India: Maraikayar Pattinam

ncbi_isolation_source: ammonia oxidizing aquaculture pond sediment

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: JNTUH


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: PA

ncbi_isolation_source: intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: GA

ncbi_isolation_source: forest

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Lactonifactor longoviformis

ncbi_submitter: University of Chicago


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: India

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillus paramobilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Zwartia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Velthaea sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Velthaea;x__unclassified Candidatus Velthaea;s__Candidatus Velthaea sp.


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Center for Microbial Communities


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Planctomyces sp.


ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: FAFU


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Brazil: Fortaleza


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa


ncbi_country: Australia

ncbi_isolation_source: Red wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Hebei

ncbi_organism_name: Pseudoxanthomonas winnipegensis

ncbi_submitter: Hebei University


ncbi_country: Argentina

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_country: Brazil: Braganca


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_country: China: Beijing

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Italy: Bologna

ncbi_isolation_source: Rectal swab

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: Japan

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Taiwan: Pingtung Prefecture; Tungkang

ncbi_organism_name: Nitratireductor alexandrii

ncbi_submitter: Zhejiang Ocean University


ncbi_organism_name: Rhodospirillaceae bacterium


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Utah


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Urethral

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: USA: Albuquerque; NM

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella oxytoca

ncbi_strain_identifiers: UNM

ncbi_submitter: University of New Mexico


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Mexico

ncbi_isolation_source: Eggs

ncbi_organism_name: Pseudomonas sp. S31

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_country: Kazakhstan: Almaty

ncbi_isolation_source: suspension

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human skin

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_country: Brazil

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridiales bacterium


ncbi_isolation_source: BLOOD

ncbi_submitter: SC


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB07-123

ncbi_submitter: Broad Institute


ncbi_isolate: AOP35_03-ete_surf _bin _3

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP35_03-ete_surf _bin _3

ncbi_submitter: Genoscope


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfurirhabdus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG14588

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Pseudoalteromonas xiamenensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: CA

ncbi_isolation_source: frozen vegetable

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_submitter: University of Tartu


ncbi_country: China

ncbi_isolation_source: wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Belgium

ncbi_isolation_source: cervix

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_country: Switzerland

ncbi_submitter: University of Bern


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_39_34


ncbi_country: USA: California; Eel River; South Fork Eel River; downstream of confluence with Fox Creek

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_35_SFW_U_B

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Russia: Troitsa Bay; Sea of Japan

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Microbulbifer thermotolerans

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Texas Tech University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcaceae bacterium AF13-5-6.0

ncbi_submitter: BGI-Shenzhen


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Nagoya University


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Rhizobiales bacterium UBA1917

ncbi_submitter: University of Queensland


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: Nebraska

ncbi_isolation_source: Mucus

ncbi_organism_name: Mannheimia haemolytica USMARC_2286

ncbi_submitter: USDA-ARS U.S. Meat Animal Research Center


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Christensenella sp.


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: USA: Tennessee

ncbi_organism_name: Pusillimonas sp.

ncbi_submitter: University of Oklahoma


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: bronchoalveolar

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: FIOCRUZ


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Aurangabad

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Shewanella sp. 10N.286.51.B7

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCBD17_019

ncbi_submitter: University of California, Irvine


ncbi_organism_name: Streptomyces sp. 16-176A

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Peptostreptococcus porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: California; Calistoga

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Candidatus Pacearchaeota archaeon

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;x__Candidatus Pacearchaeota;x__unclassified Candidatus Pacearchaeota;s__Candidatus Pacearchaeota archaeon


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_organism_name: Bacillus cereus group sp. BceL295

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL295


ncbi_submitter: Maynooth University


ncbi_organism_name: uncultured Actinomycetaceae bacterium


ncbi_organism_name: Streptobacillus sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Enterobacter cloacae complex sp. IR5385

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5385


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterococcus sp. DIV2454a

ncbi_submitter: Broad Institute


ncbi_submitter: Kyoto University


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_organism_name: Brevibacillus choshinensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Planctomycetes bacterium GWF2_39_10

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium GWF2_39_10


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Ilumatobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: AAFC


ncbi_country: South Korea: Seoul

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tianjin Centers for Disease Control and Prevention


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Hydrogenophilales bacterium 17-64-65


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Korea: Jeju

ncbi_isolation_source: soil

ncbi_organism_name: Mucilaginibacter gotjawali

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: France

ncbi_isolation_source: Human

ncbi_organism_name: Campylobacter lari CCUG 22395

ncbi_submitter: USDA, ARS


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_country: Oman: Somail Ophiolite

ncbi_isolation_source: Aquifer water

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_country: Canada: BC

ncbi_isolation_source: Rectal

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Washington University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: Netherlands

ncbi_organism_name: Acetobacter ascendens

ncbi_submitter: Chung-Ang University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: India: Vellore

ncbi_isolation_source: Respiratory specimen

ncbi_submitter: Christian Medical College, Vellore


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Greece

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter sp. EC-ML559

ncbi_submitter: General University Hospital of Patras


ncbi_organism_name: Acinetobacter baumannii AB_TG2032

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 102

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: SNUC 258

ncbi_submitter: University of Calgary


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: UC Davis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Chlamydia abortus

ncbi_submitter: Wageningen Bioveterinary Research


ncbi_country: Thailand: Ratchaburi

ncbi_isolation_source: natural water sources close by farm or community

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Chulalongkorn University


ncbi_country: China: Zouma; Hefeng County in Hubei Province

ncbi_isolation_source: rice field

ncbi_organism_name: Nostoc sphaeroides CCNUC1

ncbi_submitter: Central China Normal University


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Poland: farmland in Jasienowka

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Bialystok


ncbi_organism_name: Exiguobacterium sp. PvP048

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. PvP048


ncbi_country: Brazil

ncbi_isolation_source: chicken carcass (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: freshwater MAG --- Loc090519-1m_bin-1759

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12098

ncbi_submitter: South China Agricultural University


ncbi_country: Canada

ncbi_submitter: Health Canada


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_organism_name: Streptomyces sp. NPDC048185

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 59:[k]:z35


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ruminococcus sp. AF46-10NS

ncbi_submitter: BGI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


ncbi_country: Iran: Persian Gulf; Hormu

ncbi_isolation_source: marine surface water

ncbi_organism_name: Synechococcus sp. HW_metabat.54

ncbi_submitter: University of Tehran


ncbi_organism_name: Streptococcus hyointestinalis

ncbi_submitter: University of Manitoba


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Meleagridis


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: South Africa: Durban

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of KwaZulu Natal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Ruminococcus bromii


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: Greece

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Staphylococcus hyicus


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Malaysia

ncbi_organism_name: Leptospira yasudae

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Zhejiang university


ncbi_country: Australia: Carnavon; Western Australia

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. australasiaticum


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae SGBS003

ncbi_submitter: MD Anderson Cancer Center


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Antecubital fossa swab

ncbi_organism_name: Paenibacillus sp. p3-SID867

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Streptomyces werraensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Rumen uncultured genome RUG11354

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: EMG


ncbi_country: USA: PA

ncbi_isolation_source: joint cavity bovine (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Japan:Ibaraki; Lake Kasumigaura

ncbi_organism_name: Microcystis aeruginosa NIES-3806

ncbi_submitter: National Institute for Environmental Studies


ncbi_isolation_source: pleural effusion

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Rakuno Gakuen University


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Huangshaping Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese CDC


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Pseudomonas siliginis

ncbi_strain_identifiers: P

ncbi_submitter: Laboratoire Agronomie et Environnement


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Microbacterium aerolatum

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 584

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Cellulosilyticaceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_submitter: Aalborg University


ncbi_organism_name: Burkholderiales bacterium


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: India

ncbi_isolation_source: soil

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Sanvira Biosciences Pvt Ltd


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Pseudomonas tolaasii NCPPB 2192

ncbi_strain_identifiers: NCPPB 2192

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas fluorescens group;s__Pseudomonas tolaasii;x__Pseudomonas tolaasii NCPPB 2192


ncbi_country: Italy: Molveno (TN)

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Alicycliphilus sp. UBA6560


ncbi_country: Norway: Narvik

ncbi_isolation_source: air vent water in a clinic

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: China

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Hymenobacter sediminicola

ncbi_submitter: Nanjing Forestry University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Atopobium deltae


ncbi_isolation_source: chicken gut metagenome


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: China: Zhijin; Guizhou Province

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: South china normal university


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Spain

ncbi_isolation_source: broiler feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade de Santiago de Compostela


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 1-182-04_S4_C2

ncbi_submitter: IGS


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Streptococcus thermophilus CAG:236

ncbi_submitter: DTU


ncbi_organism_name: Pelistega suis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Huaibei Normal University


ncbi_assembly_name: Rumen uncultured genome RUG11957

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H84956

ncbi_submitter: Broad Institute


ncbi_country: China: Baoding

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: CAU


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Thailand: Ubon

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Georgia Tech


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_49_38


ncbi_submitter: University of Lethbridge


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Lund University


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_isolation_source: CF patient

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: LM-UGent


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Galway


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: central venous catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: Lancefieldella parvula DSM 20469


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Florida

ncbi_organism_name: Pantoea sp. Pa-EAmG

ncbi_strain_identifiers: Pa-EAmG

ncbi_submitter: LANGEBIO


ncbi_organism_name: Thermacetogeniaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_country: USA: Baltimore; MD

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: IGS


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Melbourne


ncbi_country: China: Daqing

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NEAU-S7GS2

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: burned soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: China: hefei

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Affiliated Provincial Hospital of Anhui Medical University, Anhui Medical University


ncbi_country: Spain: off the coast of Alicante

ncbi_organism_name: Alteromonas sp.

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: Japan: Tochigi

ncbi_organism_name: Paracidovorax cattleyae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: China: Shanghai

ncbi_organism_name: Pseudomonas aeruginosa SJTD-1

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_country: Malaysia

ncbi_isolation_source: gastric

ncbi_organism_name: Burkholderia sp. 136(2017)

ncbi_submitter: University of Malaya


ncbi_assembly_name: JGI assembly

ncbi_country: India: Jharkand; Surajkund

ncbi_isolation_source: water from hotspring

ncbi_organism_name: Anoxybacillus suryakundensis

ncbi_submitter: DOE - Joint Genome Institute


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Maribacter sp.

ncbi_submitter: Ocean University of China


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Cryptobacterium sp.

ncbi_submitter: EMG


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB245a_519O11

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Chile: Tarapaca; Chilean Altiplano; Salar de Huasco

ncbi_isolation_source: saline wetland

ncbi_organism_name: Exiguobacterium sp. SH31

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. SH31


ncbi_country: Peru: Lambayeque

ncbi_organism_name: Streptomyces sp. CS227

ncbi_submitter: Universidad de Oviedo


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Isolate 31

ncbi_submitter: University of Siena


ncbi_country: China: Hangzhou

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Canada: North Vancouver

ncbi_isolation_source: Ixodes pacificus

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Insolitispirillum peregrinum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UFMG


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella sp. PB5

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AM-2014-D8_bin-0243

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: uncultured Gaiellaceae bacterium


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Serratia nevei

ncbi_submitter: Biomedical Research Institute of A Coruna (INIBIC-CHUAC)


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Corynebacterium diphtheriae 31A

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D7_bin-670


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RIFCSPHIGHO2_01_FULL_39_32


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: LBMM 6404

ncbi_submitter: University of the Basque Country


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_assembly_name: freshwater MAG --- Umea1_bin-2616

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium