ncbi_country: USA:New York Suffolk

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: United Kingdom:Lothian

ncbi_genome_representation: full

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome RUG346

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Viet Nam

ncbi_isolation_source: Edible insect Bombyx mori

ncbi_organism_name: Escherichia coli

ncbi_submitter: Justus Liebig University Giessen


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 7-233-03_S4_C2

ncbi_submitter: IGS


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of New South Wales


ncbi_country: Japan: the Peter the Great Bay

ncbi_isolation_source: red alga

ncbi_organism_name: Roseibium polysiphoniae

ncbi_refseq_category: reference genome

ncbi_submitter: Guangdong Academy of Sciences

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Agrobacterium sp. NCPPB 925

ncbi_strain_identifiers: NCPPB 925

ncbi_submitter: Genoscope CEA


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_isolation_source: Human

ncbi_organism_name: Achromobacter dolens

ncbi_submitter: GHENT UNIVERSITY


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HANYANG UNIVERSITY


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Jiangnan University


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-0800

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Brucella melitensis 11-1823-3434

ncbi_submitter: Broad Institute


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_assembly_level: Complete Genome

ncbi_country: Japan

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Yakult Central Institute


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_country: Canada: Kamloops

ncbi_isolation_source: Vermicompost

ncbi_organism_name: Gordonia sp. NB41Y

ncbi_submitter: Thompson Rivers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. NB41Y


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nitrobacter sp. JJSN

ncbi_strain_identifiers: JJSN

ncbi_submitter: Chungbuk National University


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2623620615 annotated assembly

ncbi_organism_name: Paenisporosarcina quisquiliarum

ncbi_strain_identifiers: SK 55

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Micavibrio sp.


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Muribaculum intestinale


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Belgium

ncbi_isolation_source: Rambutan

ncbi_organism_name: Gluconobacter japonicus

ncbi_submitter: Ghent University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Municipal Center for Disease Control and Prevention


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Desulfobacterales bacterium


ncbi_organism_name: uncultured Leptolinea sp.


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Germany: Munich

ncbi_isolation_source: 1-methylnaphthalene degrading enrichment culture

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Duisburg-Essen


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Streptomyces sp. NPDC088175

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Turkey

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-3150

ncbi_submitter: BILS


ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Colon

ncbi_organism_name: Parvibacter caecicola

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Athens

ncbi_isolation_source: horse manure

ncbi_organism_name: Clostridium thermobutyricum DSM 4928

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Australia: Victoria

ncbi_isolation_source: aerobically stored lamb

ncbi_organism_name: Brochothrix thermosphacta

ncbi_submitter: CSIRO Agriculture and Food; Food Safety and Stability Group


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Otago


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom: Leicester

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Neck/Axilla

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sp. GD03730

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Guatemala

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_country: Poland

ncbi_isolation_source: Poland; Warsaw area

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Cyanobacteria bacterium J06627_32

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06627_32


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University clinic Muenster


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: USA: Washington State

ncbi_isolation_source: sludge from plant roots

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Paenibacillus glufosinatiresistens

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Hong Kong

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Gazipur Agricultural University


ncbi_isolation_source: oral

ncbi_organism_name: Campylobacter rectus RM3267

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Harpers Ferry; Iowa

ncbi_isolation_source: sink drain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Providencia sp. wls1943

ncbi_submitter: NanKai universit


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_assembly_name: Rumen uncultured genome RUG12967

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: swab

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: SC


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Texas at San Antonio


ncbi_isolation_source: The Red Sea

ncbi_organism_name: Sulfitobacter sp. Ks38

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_assembly_name: Rumen uncultured genome RUG10580

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Jiangsu;Nanjing

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Treponema sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Ruminococcaceae bacterium UBA1734

ncbi_submitter: University of Queensland


ncbi_country: Spain

ncbi_organism_name: Megamonas hypermegale

ncbi_submitter: Quadram Institutte


ncbi_country: South Korea: Geojedo

ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Pukyong National University


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 11

ncbi_submitter: Lebanese American University


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: India: Maharashtra

ncbi_isolation_source: commercial preparation

ncbi_submitter: Agharkar Research Institute


ncbi_submitter: Centers for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_submitter: Center for Microbial Communities


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salmonella sp. SAL04287

ncbi_submitter: Zhejiang university


ncbi_organism_name: Alloiococcus sp. CFN-8

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Kitasatospora sp. NPDC093806

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: China

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou university


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Mexico: Sinaloa; Angostura

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CIAD, A.C.


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 1-110-08_S1_C3

ncbi_submitter: IGS


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Yunnan

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Corynebacterium sp. LaCa142

ncbi_submitter: Bielefeld University


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: China CDC


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Bacillus cereus group sp. BceL207

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL207


ncbi_assembly_name: Azospirillum sp. B2RO_4

ncbi_organism_name: Azospirillum sp. B2RO_4

ncbi_submitter: KU Leuven


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Eubacterium ventriosum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute, Germany


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Bicetre hospital


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site B

ncbi_isolation_source: Beach sand

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 20 to 25cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Algeria: Oran

ncbi_isolation_source: evergreen rhizosphere soil

ncbi_organism_name: Saccharothrix sp. NRRL B-16314

ncbi_submitter: University of Illinois


ncbi_country: USA

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Oregon State University


ncbi_country: Niger

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 2006087

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Japan: Okinawa

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: University of California, Davis


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Insytitute of microbiology and epidemiology


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Bulgaria

ncbi_isolation_source: Naturally processed; home-made dairy foods from ecologically clean preserves; industrial pollution-free and chemically-untampered areas

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Guelph


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Peptococcus niger

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Municipal Center for Disease Control & Prevention


ncbi_country: Singapore

ncbi_isolation_source: urine

ncbi_submitter: National University of Singapore


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of East Anglia


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_organism_name: Balneola sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Micromonospora sp. NPDC049559

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_country: Thailand

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: Mycoplasmoidaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lysobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EBI


ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter coli

ncbi_submitter: FDA


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Helicobacter rodentium


ncbi_organism_name: Rosettibacter primus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Spain

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: IRD


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of Calgary


ncbi_country: USA: Rochester; NY

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Haruko Takeyama Lab., Waseda University


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 6-319-05_S4_C3

ncbi_submitter: IGS


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_organism_name: Catalimonadaceae bacterium JC749

ncbi_submitter: JNTUH


ncbi_organism_name: uncultured Synergistaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-398

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_strain_identifiers: new MAG-398

ncbi_submitter: Micoorganism


ncbi_assembly_name: freshwater MAG --- AM5_bin-0949

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Asticcacaulis sp. DW145

ncbi_submitter: University of Hyogo


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA1072

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1072


ncbi_assembly_level: Chromosome

ncbi_country: Italy: Verona; San Giovanni Lupatoto

ncbi_isolation_source: faeces of healthy infant

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Microbion Srl


ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14214

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Glutamicibacter sp.


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: Anaerococcus vaginalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: China Medical University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: University of Western Australia


ncbi_organism_name: Segatella bryantii

ncbi_submitter: Advanced Analysis Center, National Agriculture and Food Research Organization


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Flagellimonas aurea

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Azorhizobium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Parvicellaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: DS-I Africa


ncbi_organism_name: Alistipes inops

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- Loclat_bin-05041

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with retrograde maize

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Salmonella sp. NW1015

ncbi_submitter: Sichuan University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: bulk soil from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-B-28

ncbi_submitter: Rothamsted Research


ncbi_isolation_source: nasopharynx


ncbi_country: Laos

ncbi_isolation_source: River

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Bern


ncbi_organism_name: Nitrospiria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Gordonia defluvii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Enugu State University of Science and Technology (ESUT)


ncbi_country: USA: California; Eel River; Dobbyn Creek near Fort Seward

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8945

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: USC EA3671 IHMC


ncbi_organism_name: Klebsiella pneumoniae UHKPC05

ncbi_submitter: JCVI


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10876

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Eubacterium sp. AF22-9

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. AF22-9


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Neorhizobium alkalisoli

ncbi_submitter: Centre for Plant Biotechnology and Genomics UPM-INIA


ncbi_organism_name: Sinorhizobium fredii

ncbi_strain_identifiers: USDA 208

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Ethiopia

ncbi_organism_name: Xanthomonas arboricola pv. guizotiae

ncbi_strain_identifiers: CFBP 7409

ncbi_submitter: INRA


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Lachnoanaerobaculum sp.

ncbi_submitter: EMG


ncbi_country: China: Yantai

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Mailhella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Pocheon Province

ncbi_isolation_source: soil of a ginseng field

ncbi_organism_name: Nocardioides pocheonensis

ncbi_strain_identifiers: Gsoil 818

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: delta Sterne

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus FVRH6021

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: RSAGOLDDR

ncbi_isolate: RSAGOLDDR

ncbi_organism_name: Arthrobacter sp. DR-2P

ncbi_strain_identifiers: RSAGOLDDR

ncbi_submitter: THE UNIVERSITY OF ADELAIDE


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium sp. HMSC075D04

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: India: River Ganga; Varanasi

ncbi_isolation_source: river surface water

ncbi_submitter: Banaras Hindu University


ncbi_country: Malaysia

ncbi_isolation_source: ETT secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: bioBiome, Inc.


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Nanjing

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: human stool

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 824

ncbi_isolation_source: feces

ncbi_organism_name: Succinivibrio sp.

ncbi_strain_identifiers: CIM:MAG 824

ncbi_submitter: Mayo Clinic


ncbi_assembly_name: B.pseudomallei CMS

ncbi_isolation_source: blood sample of melioidosis patient

ncbi_organism_name: Burkholderia pseudomallei CMS

ncbi_strain_identifiers: CMS

ncbi_submitter: Universiti Malaya, Kuala Lumpur


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Portugal

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Africa: Soweto; Gauteng

ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPLOWO2_02_FULL_43_10


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori GAMchJs106B

ncbi_submitter: Washington University


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Italy: Bologna

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Lake Washington

ncbi_organism_name: Methyloferula stellata AR4

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Allobacillus sp. GCM10007489

ncbi_strain_identifiers: PCU SKP2-8

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Michigan


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Campylobacter sp.


ncbi_isolate: AOP40_10SA_surf _bin _8

ncbi_organism_name: Corynebacterium sp.

ncbi_strain_identifiers: AOP40_10SA_surf _bin _8

ncbi_submitter: Genoscope


ncbi_country: China: Fujian; Zijin

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Food Research Institute, National Agriculture and Food Research Organization


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: University of Copenhagen


ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Woeseia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Articular cavity

ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2139

ncbi_submitter: Broad Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Cellvibrionaceae bacterium UBA677

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Weeksellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Carson; CA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii AB_908-13

ncbi_submitter: Translational Genomics Research Institute


ncbi_isolation_source: SWINE CARCASS

ncbi_organism_name: Escherichia coli

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces chiangmaiensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- AM_bin-0408

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: USA: Salinas; California

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_assembly_name: Rumen uncultured genome RUG12048

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: rhizosphere soil culture M56

ncbi_organism_name: Altererythrobacter sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: United Kingdom: London

ncbi_isolation_source: swab

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B044;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: Unhealthy carrier

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Fundacao Oswaldo Cruz


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 12

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: University of Wyoming


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 93


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_country: USA: Kentucky

ncbi_isolation_source: grass silage

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ALLTECH, INC, Nicholasville, KY 40356 United States


ncbi_country: Thailand

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: Toho University


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: MD

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chicago


ncbi_country: USA: Texas

ncbi_isolation_source: Granular activated carbon

ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Mumbai

ncbi_isolation_source: retail fish market

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Central Institute of Fisheries Technology, Cochin


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas at San Antonio


ncbi_country: Ireland: Cork

ncbi_isolation_source: tongue

ncbi_organism_name: Macrococcoides canis

ncbi_submitter: Teagasc Food research


ncbi_organism_name: Treponemataceae bacterium


ncbi_organism_name: Streptomyces sp. NBC_00243

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Becker; Minnesota

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Zhejiang

ncbi_isolation_source: hospital environment

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: Russia: Moscow

ncbi_isolation_source: Skin lesions

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Anna Balbutskaya's shared submissions


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Saprospirales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Saprospiria;o__Saprospirales;x__environmental samples;s__uncultured Saprospirales bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: raw meat-based diets for companion animals

ncbi_submitter: University of Zurich


ncbi_country: USA

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_isolation_source: wastewater

ncbi_submitter: US EPA


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Colorado State University


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: NSW Department of Primary Industries


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Copenhagen


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Blautia sp.


ncbi_organism_name: uncultured Serratia sp.


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Amycolatopsis umgeniensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Oman

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: Italy

ncbi_isolation_source: poultry caecal contents

ncbi_organism_name: Campylobacter avium

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_country: Sri Lanka: Colombo

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Nanyang Technological University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__unclassified Candidatus Sericytochromatia;x__environmental samples;s__uncultured Candidatus Sericytochromatia bacterium


ncbi_submitter: Uniwersytet Warminsko-Mazurski w Olsztynie


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW531-R1

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Streptococcus pyogenes ABC020035427

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas batumici

ncbi_submitter: Juntendo University


ncbi_organism_name: uncultured Neisseria sp.


ncbi_organism_name: Tabrizicola sp. YIM 78059

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Odoribacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Wilmar International Limited


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Haemaphysalis japonica


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Clostridioides sp. GD02368

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Salmonella sp. SKLX087903

ncbi_submitter: Zhejiang university


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 3d patty soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Peking university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Proteus hauseri

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: Salmonella enterica CVM N51315 v1.0

ncbi_country: USA: WA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA2675

ncbi_submitter: University of Queensland


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence


ncbi_assembly_name: Salmonella enterica CVM N45943 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Pork Chops

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Lausanne


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: intestine

ncbi_organism_name: Limosilactobacillus balticus

ncbi_submitter: University of Alberta


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Serratia plymuthica


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Radboud University


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Ramon y Cajal


ncbi_country: USA: Tampa; FL

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_country: South Korea: Goyang-si

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Korea Disease Control and Prevention Agency


ncbi_country: Guinea

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Streptomyces thermoviolaceus subsp. apingens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Human (wound)

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Canada: Winnipeg

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Hohhot

ncbi_isolation_source: dairy products

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: university


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2191


ncbi_country: China: Jiangsu

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus salivarius


ncbi_country: Italy

ncbi_isolation_source: salami paste production

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: China: Guangzhou

ncbi_isolation_source: ICU patient rectal swab

ncbi_submitter: University of Birmingham


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Streptomyces sp. NBC_00224

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: ankle aspirate fluid from male patient

ncbi_organism_name: Corynebacterium pilbarense

ncbi_submitter: Guangdong Provincial Hospital of Traditional Chinese Medicine


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_country: Antarctica

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Flavobacterium hibernum


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: New York

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Pseudomonas monachiensis

ncbi_submitter: LMU Munich


ncbi_organism_name: Bacillus albus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China

ncbi_submitter: Second Affiliated Hospial of Zhejiang University, School of Medicine


ncbi_organism_name: Microvirga flocculans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Thermincola ferriacetica

ncbi_submitter: University of Bremen


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_country: Kenya: Kajiado County

ncbi_isolation_source: termite gut

ncbi_organism_name: Deferribacteraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico

ncbi_isolation_source: feces

ncbi_submitter: Beijing Institute of Genomics, CAS


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Charles University in Prague


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_isolation_source: spacecraft surface

ncbi_organism_name: Hydrogenophaga intermedia

ncbi_strain_identifiers: MER 62

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Proximal colon


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Kitasatospora sp. LaBMicrA B282

ncbi_strain_identifiers: LaBMicrA B282

ncbi_submitter: Universidade Federal do Amazonas


ncbi_submitter: Shanghai General Hospital


ncbi_country: Chile: Easter Island

ncbi_organism_name: Streptomyces sp. IpFD-1.1

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_organism_name: Nocardia abscessus

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: INRA


ncbi_country: Switzerland

ncbi_organism_name: Bordetella bronchiseptica MBORD839

ncbi_submitter: JCVI


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: China: Beijing

ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Yantai University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: stool

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002064


ncbi_organism_name: uncultured Luteolibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Mycobacterium sp.


ncbi_country: USA: BIFSCo Region 8

ncbi_isolation_source: bovine post-intervention carcass

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1808


ncbi_isolate: SPRUCE 338

ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_strain_identifiers: SPRUCE 338


ncbi_country: South Korea: Chungcheongnam-do

ncbi_submitter: UNIST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Actinomycetaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: uncultured Tissierellaceae bacterium


ncbi_organism_name: Janthinobacterium sp. UMAB-60

ncbi_submitter: UNIVERSITY OF MALAYA


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Sediminibacterium ginsengisoli

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC056296

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces sp. NPDC057889


ncbi_organism_name: Pseudomonas sp. KCJK9044

ncbi_submitter: University of Florida


ncbi_organism_name: Phocaeicola sp.


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Salibacterium lacus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Wuhan

ncbi_isolation_source: seawater layers

ncbi_organism_name: Microbacterium testaceum

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: NIVIP


ncbi_country: USA: Georgia

ncbi_isolation_source: week R1 calf 20 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_country: China: eastern marginal seas

ncbi_isolation_source: sea water

ncbi_organism_name: Vibrio sinensis

ncbi_submitter: Ocean University of China


ncbi_isolation_source: terrestrial

ncbi_organism_name: Rhodospirillum rubrum

ncbi_submitter: University of Queensland


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Mexico

ncbi_isolation_source: feces (Tayassu pecari)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Dysgonomonas mossii

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Paenibacillus vulneris


ncbi_isolation_source: Seto Island Sea

ncbi_organism_name: Sulfitobacter sp. M72

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Distal colon

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 329

ncbi_organism_name: Staphylococcus pasteuri

ncbi_strain_identifiers: SNUC 5836

ncbi_submitter: University of Calgary


ncbi_country: Kenya

ncbi_isolation_source: Clinical

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 16553_1

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa BWHPSA023

ncbi_submitter: Broad Institute


ncbi_country: Canada: Alberta

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Leminorella grimontii


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_organism_name: Providencia vermicola

ncbi_submitter: sichuan university


ncbi_isolation_source: Infant 1 DOL 19 gut

ncbi_organism_name: Clostridioides difficile


ncbi_country: Israel: Tel Aviv

ncbi_isolation_source: powdered infant formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Ministry of Health, National Public Health Laboratory


ncbi_country: Canada

ncbi_isolation_source: Isolated from contaminated platelet concentrates

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Health Canada


ncbi_strain_identifiers: H37Rv-ptkA mutant

ncbi_submitter: University of British Columbia


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_country: Netherlands

ncbi_isolation_source: associated with the Q-fever outbreak in the Netherlands in 2009

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: NL-Limburg

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_country: South Korea:Asan Bay

ncbi_isolation_source: sediment

ncbi_organism_name: Agarivorans litoreus

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA: New York

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Chicago


ncbi_organism_name: Hyphomicrobiales bacterium 4NK60-0047b

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NITE)


ncbi_country: USA: Michigan

ncbi_isolation_source: body fluid

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Case Western Reserve University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. MWU12-3091

ncbi_submitter: Midwestern University


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Helicobacter sp. 12S02634-8

ncbi_submitter: Utrecht University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Intra-abdominal infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Sphingomonas sp. CCH21-G11

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_organism_name: Halalkalibacterium halodurans

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_organism_name: Paenarthrobacter ureafaciens

ncbi_submitter: Shandong University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_country: Greenland: Scoresbysund

ncbi_isolation_source: gingival mucosa

ncbi_organism_name: Ursidibacter maritimus

ncbi_submitter: University of Copenhagen


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Inquilinus sp.

ncbi_submitter: Monash University


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Shanghai Ocean University


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: gut

ncbi_organism_name: Enterobacteriaceae bacterium ESL0689

ncbi_submitter: University of Lausanne


ncbi_country: United Kingdom

ncbi_isolation_source: Dental Plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: SC


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Romania: Bucharest

ncbi_isolation_source: Enviromental

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: USA: United States BIFSCo Region 6

ncbi_isolation_source: fecal swab

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Denmark: Slagelse

ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_submitter: Center for Microbial Communities


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Naval Medical Research Center, Biological Defense Research Directorate


ncbi_country: China

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: East China University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Terriglobia bacterium


ncbi_country: South Korea

ncbi_isolation_source: greenhouse soil

ncbi_organism_name: Lysobacter niastensis

ncbi_submitter: University of Parma


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mesorhizobium sp. M0859

ncbi_submitter: Washington State University


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: Chile: Region de Aysen

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_submitter: URMC


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University