ncbi_country: Serbia

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Aerococcus urinae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_assembly_level: Scaffold

ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_submitter: West China hospital of Sichuan university


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: UNICAMP


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Spain: Asturias

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_isolate: AOP5_B1_surf _bin _1

ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_strain_identifiers: AOP5_B1_surf _bin _1

ncbi_submitter: Genoscope


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Denmark

ncbi_isolation_source: pleural fluid

ncbi_organism_name: Brucella anthropi

ncbi_strain_identifiers: LMG 34

ncbi_submitter: INRA - Institut National de la Recherche Agronomique


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Broad Institute


gtdb_representative: t

ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of Auckland


ncbi_assembly_level: Complete Genome

ncbi_country: Netherlands

ncbi_organism_name: Wolbachia pipientis

ncbi_refseq_category: reference genome

ncbi_submitter: University of Georgia


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Verrucomicrobia bacterium UBA1337

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA1337


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_organism_name: Vibrio sp. 1727

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Alteromonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Smithella sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Gimesia sp.


ncbi_country: USA: Alaska

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. SID13031

ncbi_submitter: University of Wisconsin Madiso


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Oceanomicrobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: SC


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Anaerolineaceae bacterium UBA4890


ncbi_country: India: Kerala

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Ktedonobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Florida

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. AAUFL_F1_KS45

ncbi_submitter: Emory University


ncbi_country: Canada: Ontario

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_organism_name: Acidaminobacteraceae bacterium


ncbi_country: Greece: Athens

ncbi_isolation_source: Stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Unniversity of Queensland


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H40583

ncbi_submitter: Broad Institute


ncbi_organism_name: Hyphomicrobium sp.


ncbi_country: New Zealand: Manawatu

ncbi_isolation_source: farm soil

ncbi_organism_name: Clostridium senegalense

ncbi_submitter: AgResearch


ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium sp. HMSC071F07

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China

ncbi_isolation_source: Hematology

ncbi_submitter: Guangzhou Medical University


ncbi_country: India: New Delhi

ncbi_isolation_source: bronchoalveolar lavage


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: spinach

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Egypt

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: New Brunswick; Bouctouche

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: Universite de Moncton


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_submitter: Stavanger University Hospital


ncbi_country: Sudan

ncbi_isolation_source: Mycetoma Lesion

ncbi_organism_name: Streptomyces albogriseolus

ncbi_submitter: Newcastle University


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_submitter: Wageningen University


ncbi_country: Germany: Tubingen

ncbi_isolation_source: leaf

ncbi_organism_name: Methylobacterium sp. Leaf99

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: New Hampshire; Manchester

ncbi_isolation_source: large wooden beam from an 1800s New England red brick mill building

ncbi_organism_name: Micrococcus luteus

ncbi_strain_identifiers: AH-P


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_submitter: the seqafrica consortium


ncbi_country: Spain: Madrid

ncbi_isolation_source: Urine sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Ramon y Cajal de Investigacion Sanitaria


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


gtdb_type_species_of_genus: t

ncbi_country: China: Hangzhou

ncbi_isolation_source: the rhizosphere of Salvia miltiorrhiza

ncbi_organism_name: Foetidibacter luteolus

ncbi_submitter: Zhejiang sci-tech university

ncbi_type_material_designation: assembly from type material


ncbi_country: Lebanon

ncbi_submitter: LAU


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Roseomonas mucosa

ncbi_strain_identifiers: ACRSI

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured Desulfovibrionales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Microbacterium maritypicum

ncbi_submitter: BGI Research


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Zhejiang

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Firmicutes bacterium CAG:24053_14

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:24053_14


ncbi_submitter: Henan Agricultural University


ncbi_submitter: Kyoto University Graduate School of Medicine


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Nostocoides sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: University of California Riverside


ncbi_submitter: national health research institutes


ncbi_organism_name: Nocardia sp. NPDC057455

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Spribille Lab


ncbi_assembly_level: Chromosome

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Achromobacter genome submissions


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_assembly_name: Rumen uncultured genome RUG13727

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_country: Hungary: Szeged wastewater treatment plant

ncbi_isolation_source: Anaerobic sludge from Szeged Municipal wastewater plant s biogas plant Biogas Plant

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: uncultured Desulfobulbaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_organism_name: Chloroflexi bacterium RBG_16_68_14

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium RBG_16_68_14


ncbi_organism_name: uncultured Porticoccaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin80

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MDV bin80


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: USA: MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio metoecus

ncbi_submitter: University of Alberta


ncbi_organism_name: Spiribacter onubensis

ncbi_submitter: University of Sevilla, Spain


ncbi_country: China: Guangdong

ncbi_isolation_source: kefir grains

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: Streptomyces smyrnaeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: DOE JGI


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Streptococcus iniae

ncbi_submitter: Zhongkai University ofAgriculture and Engineering


ncbi_country: South Korea: Changwon

ncbi_isolation_source: human skin

ncbi_organism_name: Staphylococcus sp. SB1-57

ncbi_submitter: Changwon National University


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: AAFC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Beside Boulder

ncbi_organism_name: Sphaerobacteraceae bacterium

ncbi_submitter: University of Duisburg-Essen


ncbi_organism_name: Pseudoalteromonas sp. KJ71-7

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_country: China: Sichuan

ncbi_isolation_source: slaughterhouse

ncbi_submitter: Yangzhou University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_country: USA: CA

ncbi_isolation_source: rectum cervidae mandarin sika (Cervus nippon)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Tsinghua University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coprococcus sp. AF51-11b1

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Nanjing

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shan Wei

ncbi_isolation_source: shrimp pool

ncbi_organism_name: Vibrio sp. VA3

ncbi_submitter: Shenzhen Institute of Advanced Technology,Chinese Academy of Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: BGI


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG10814

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Eubacterium pyruvativorans

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: lake water

ncbi_organism_name: Legionellales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Tunisia: Tunis

ncbi_isolation_source: Bovine meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_organism_name: Candidatus Sulfopaludibacter sp. SbA4

ncbi_strain_identifiers: Peat soil MAG SbA4

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Sulfopaludibacter;x__unclassified Candidatus Sulfopaludibacter;s__Candidatus Sulfopaludibacter sp. SbA4


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: University of Washington


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 311

ncbi_submitter: SC


ncbi_country: Denmark

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Vibrio amylolyticus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudorhodoplanes sinuspersici

ncbi_strain_identifiers: CECT 8374

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human feces metagenome


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Chelatococcus sp. 1g-2

ncbi_isolation_source: Sludge ENVO:00002044

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research


ncbi_isolation_source: mouse gut metagenome


ncbi_country: China: Beijing

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Pleural Fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: Brazil:Porto Alegre

ncbi_isolation_source: abdominal collection

ncbi_submitter: UNIVERSIDADE FEDERAL DE CIENCIAS DA SAUDE DE PORTO ALEGRE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China

ncbi_isolation_source: intertidal sediment

ncbi_organism_name: Vibrio sp. Y2-5

ncbi_submitter: Third Institute of Oceanography, Ministey of Natura


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Spain: Asturias

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Barcelona


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: South Africa

ncbi_organism_name: Mycolicibacterium peregrinum

ncbi_submitter: JCVI


ncbi_strain_identifiers: Sweden

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control, China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis BCG;x__Mycobacterium tuberculosis variant bovis BCG str. Sweden


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-673-L20

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Colombia

ncbi_isolation_source: Environment

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Antioquia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: oceanic epipelagic zone biome

ncbi_organism_name: Prochlorococcus marinus str. XMU1401

ncbi_submitter: Xiamen University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Furfurilactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: United Kingdom

ncbi_isolation_source: dental plaque biofilm of the third molar tooth of an individual diagnosed with pericoronitis

ncbi_organism_name: Streptococcus sobrinus W1703

ncbi_submitter: Washington University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Acidovorax sp. Leaf84

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae


ncbi_organism_name: Candidatus Amesbacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Amesiibacteriota;x__unclassified Candidatus Amesbacteria;s__Candidatus Amesbacteria bacterium


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3694-1

ncbi_submitter: Broad Institute


ncbi_country: Netherlands

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Groningen


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS TMP-42

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: SZAS TMP-42

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolate: AOP33_8_surf _bin _4

ncbi_organism_name: Citricoccus sp.

ncbi_strain_identifiers: AOP33_8_surf _bin _4

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Duganella sp.


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__environmental samples;s__uncultured Candidatus Rokubacteria bacterium


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Woeseiaceae bacterium


ncbi_organism_name: uncultured Oceanospirillaceae bacterium


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Actinoplanes sp. NPDC049599

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Pseudomonas fluorescens

ncbi_strain_identifiers: LZB 065

ncbi_submitter: University of Exeter


ncbi_country: Portugal: Oporto

ncbi_isolation_source: Raw-frozen dog food

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Achromobacter sp. Root83

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Canada: Quebec

ncbi_isolation_source: manure

ncbi_organism_name: Citrobacter sp. Res13-Lact-LER2-35-b

ncbi_submitter: Government of Canada


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Rhizobium etli

ncbi_strain_identifiers: SEMIA 489

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus sp. CF8_St5-13

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Acetobacter tropicalis

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)


ncbi_country: USA: WA

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Washington


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: microbial pathogenic ecology group


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: India

ncbi_isolation_source: poultry dropping

ncbi_submitter: GADVASU


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Jiuzhaigou; Sichuan

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: New Mexico State University


ncbi_country: Russia: Moscow

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences


ncbi_organism_name: Pseudomonas marginalis

ncbi_submitter: Technical university of Denmark


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Faecalimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Canada: Alberta

ncbi_isolation_source: dairy milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: McGill University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_country: Belgium

ncbi_isolation_source: ulcerative lymphangitis

ncbi_organism_name: Corynebacterium pseudotuberculosis 258

ncbi_submitter: Rede Paraense de Genômica e Proteômica


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Germany: Aachen

ncbi_isolation_source: brewery wastewater

ncbi_organism_name: Segatella cerevisiae

ncbi_submitter: RWTH Aachen


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Banco


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Kordiimonadaceae bacterium

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Comenius University Science Park


ncbi_country: France

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris-Sud


ncbi_country: USA: Michigan

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Hubei

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus tropicus


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: China: Guizhou; Fuquan

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA

ncbi_isolation_source: Human

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: vaginal discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Singapore

ncbi_isolation_source: Fish part (slab) sold as silver carp; Muscle

ncbi_submitter: Singapore Streptococcus agalactiae working group


ncbi_country: China: Guangdong

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: China National Centre for Food Safety Risk Assessment