ncbi_isolation_source: skin infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: France

ncbi_genome_representation: full

ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_assembly_name: freshwater MAG --- Day6-6_bin-287

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylobacter sp.

ncbi_submitter: BILS


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_assembly_level: Complete Genome

ncbi_country: China: Nanjing

ncbi_isolation_source: ascites of a male patient with complicated abdominal infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Run Run Shaw Hospital,School of Medicine,Zhejiang University


ncbi_assembly_level: Scaffold

ncbi_country: Brazil: northeastern Brazil; Cear State

ncbi_isolation_source: sputum of a Brazilian patient with a lung infection

ncbi_organism_name: Mycobacterium fragae

ncbi_submitter: Uppsala University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_submitter: University of Texas at Austin


ncbi_submitter: University of Iowa Hospitals and Clinics


gtdb_representative: t

ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Legionellales bacterium


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 561362 1-1


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Teagasc Food Research Centre, Ireland


ncbi_country: Japan

ncbi_isolation_source: Human sputum

ncbi_organism_name: Enterobacter sp. TUM13743

ncbi_submitter: Toho University


ncbi_organism_name: Atribacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: Instituto de Biotecnologia


ncbi_assembly_name: freshwater MAG --- MJ120924B_bin-129

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Leibniz Institute of Plant Genetics and Crop Plant Research


ncbi_assembly_name: YAU

ncbi_organism_name: Yersinia pestis

ncbi_strain_identifiers: Colorado 92

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chicago


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China

ncbi_isolation_source: Food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: China: Chengdu; Sichuan


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0704

ncbi_submitter: Broad Institute


ncbi_country: Netherlands

ncbi_isolation_source: curry soup

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: TIFN


ncbi_country: Nigeria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cardiff University


ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: river sediment

ncbi_organism_name: Kaistia dalseonensis

ncbi_refseq_category: reference genome

ncbi_submitter: University of Neuchatel


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Chlamydia trachomatis G/11074

ncbi_submitter: Oregon State University


ncbi_assembly_name: freshwater MAG --- Ja2_bin-0324

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Washington D.C.

ncbi_isolation_source: Fermented milk (Laban)

ncbi_organism_name: Lacticaseibacillus casei

ncbi_strain_identifiers: HUL 5

ncbi_submitter: Howard University


ncbi_assembly_name: freshwater MAG --- YR_bin-4170

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Montreal


ncbi_submitter: DS-I Africa


ncbi_organism_name: Clostridium sp. OM08-29

ncbi_submitter: BGI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Adlercreutzia sp.

ncbi_submitter: EMG


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Prevotella amnii


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University hospital Lubeck


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Pakistan: Mithi

ncbi_isolation_source: Plant Root

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: Environment of food factories

ncbi_organism_name: Methylobacterium tardum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Neorhizobium phenanthreniclasticum

ncbi_submitter: Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Xanthomonas campestris pv. fici

ncbi_strain_identifiers: NCPPB 2372

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: China: Yunnan

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus cohnii


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_organism_name: Streptomyces sp. ME03-5709C

ncbi_submitter: Oregon State University


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Zhejiang university


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_isolation_source: Spiral shell

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: Thailand: Phatthalung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Mexico: Sinaloa; Escuinapa

ncbi_isolation_source: stomach

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CIAD, A.C.


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Kenya

ncbi_isolation_source: vaginal microbiome

ncbi_organism_name: Bifidobacteriaceae bacterium NR002

ncbi_submitter: University of Saskatchewan


ncbi_country: Russia: Moscow

ncbi_isolation_source: bronchoalveolar lavage (BAL)

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: Fayetteville AR

ncbi_isolation_source: Grower Feed

ncbi_organism_name: Kosakonia cowanii

ncbi_submitter: Pittsburg State University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium callimiconis

ncbi_submitter: University of Parma


ncbi_isolation_source: Human lung disease

ncbi_organism_name: Mycoplasmoides pneumoniae MAC

ncbi_strain_identifiers: MAC

ncbi_submitter: University of Alabama at Birmingham


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Curtobacterium sp. 9128

ncbi_submitter: BGI


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Washington; Pullman

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Gobi Desert

ncbi_isolate: GDC bin18

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: GDC bin18

ncbi_submitter: Monash University


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Guizhou; Fuquan

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Synergistota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lachnoclostridium sp.

ncbi_submitter: Biomin Research Center


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Dictyobacter vulcani

ncbi_submitter: Microbial resources, Graduate School of Agricultual Science, Tohoku Universaity


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Utah


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_submitter: Universidad de Concepcion


ncbi_country: Denmark: Region of Southern Denmark

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Slagelse Hospital


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: China: Shandong

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


gtdb_type_species_of_genus: t

ncbi_strain_identifiers: DSM 10

ncbi_submitter: University of Copenhagen


ncbi_country: China

ncbi_isolation_source: sediments

ncbi_organism_name: Aliiroseovarius sp. S2029

ncbi_submitter: shandong university


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fimbriimonas sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: USA: Hilton; NY

ncbi_isolation_source: Soil

ncbi_organism_name: Bacillus sp. RIT 809

ncbi_strain_identifiers: RIT 809

ncbi_submitter: Rochester Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RIT 809


ncbi_assembly_name: Unknown Betaproteobacterium AM_0616

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_country: Russia: Yessentuki

ncbi_isolation_source: subsurface water

ncbi_organism_name: Desulfomonilaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Hubei

ncbi_submitter: City University of Hong Kong


ncbi_country: China: Northern Yellow Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Oceanihabitans sediminis

ncbi_submitter: Shandong University at Weihai


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium UBA6260


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-316-03_S4_C1

ncbi_submitter: IGS


ncbi_isolation_source: Faeces

ncbi_organism_name: Adlercreutzia caecimuris


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Agromyces atrinae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: Colombia: Santander

ncbi_organism_name: Escherichia coli

ncbi_submitter: International Center for Microbial Genomics - Universidad El Bosque


ncbi_country: Japan

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_assembly_level: Chromosome

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UCSF


ncbi_country: Switzerland

ncbi_isolation_source: cheese smear

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Brigham Young University


ncbi_country: New Zealand

ncbi_isolation_source: mushroom caps exhibiting blotch discolorations at a mushroom farm

ncbi_organism_name: Pseudomonas fluorescens NZ052

ncbi_submitter: The Sainsbury Laboratory


ncbi_organism_name: uncultured bacterium


ncbi_country: Japan:Ibaraki; Tsukuba

ncbi_isolation_source: mesophilic sediment

ncbi_organism_name: Rhodoferax lithotrophicus

ncbi_submitter: RIKEN-BRC


ncbi_country: Indian Ocean: Red Sea

ncbi_isolation_source: (DCM) deep chlorophyll maximum layer

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: USA: New York City

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Dahi fermented milk product

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Quaid-I-Azam University


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Shanxi

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Health Research Institutes


ncbi_isolate: AOP25_F2_surf _bin _17

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP25_F2_surf _bin _17

ncbi_submitter: Genoscope


ncbi_isolation_source: enriched consortium

ncbi_organism_name: Dehalococcoides sp. UCH007

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Mediterranea massiliensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes


ncbi_isolation_source: Lower Respiratory Tract Secrection

ncbi_submitter: WTSI


ncbi_country: China: Henan

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: Hong Kong

ncbi_organism_name: Chelatococcus composti

ncbi_submitter: The University of Hong Kong


ncbi_country: Australia: Surat Basin

ncbi_isolation_source: Coal seam formation water

ncbi_organism_name: Acetobacterium wieringae

ncbi_submitter: CSIRO


ncbi_country: USA

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: root

ncbi_organism_name: Flavobacterium sp. GSB-24

ncbi_submitter: Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Italy: Modena

ncbi_isolation_source: Respiratory Sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_assembly_name: Rumen uncultured genome RUG13275

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Yersinia wautersii

ncbi_submitter: Irkutsk Antiplague Research Institute


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Plesiomonas sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces erythrochromogenes


ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: This work was funded by the University Paris-Sud, France. R.A.B., L.D., and T.N. are members of the Laboratory of Excellence in Research on Medication and Innovative Therapeutics (LERMIT), supported by a grant from the French National Research Agency (ANR-10-LABX-33). This work was also supported by the “PHC Utique” program of the French Ministry of Foreign Affairs, the French Ministry of Higher Education, Research and Innovation and the Tunisian Ministry of Higher Education and Scientific Research under the CMCU project number 21G0807.


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: uncultured Woeseiaceae bacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UIUC


ncbi_organism_name: Thermus oshimai

ncbi_strain_identifiers: Blanco

ncbi_submitter: Institute of Gene Biology Russian Academy of Sciences


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Silvibacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Adlercreutzia sp.


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Flavobacteriales bacterium


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Streptomyces cyaneofuscatus


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolate: AOP23_C1_surf _bin _10

ncbi_organism_name: Enterococcus devriesei

ncbi_strain_identifiers: AOP23_C1_surf _bin _10

ncbi_submitter: Genoscope


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef sponge

ncbi_organism_name: Candidatus Binatota bacterium

ncbi_submitter: James Cook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;x__unclassified Candidatus Binatota;s__Candidatus Binatota bacterium


ncbi_organism_name: uncultured Synechococcus sp.


ncbi_isolation_source: rabbit gut


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Norway: Viken

ncbi_isolation_source: feces

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Neglectibacter sp. CSJ-5

ncbi_submitter: Shandong University,Qingdao


ncbi_isolation_source: CSF


ncbi_organism_name: Candidatus Nitrotoga sp.

ncbi_submitter: University of Montana

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp.


ncbi_country: USA: San Francisco

ncbi_isolation_source: patient blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Brazil: Bahia

ncbi_isolation_source: Biofilm periphyton collected on a rock

ncbi_organism_name: Leptospira meyeri

ncbi_submitter: Federal University of Bahia


ncbi_country: Paraguay

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Federal University of Health Sciences Ila Orangu


ncbi_country: United Kingdom: London

ncbi_isolation_source: Subgingival plaque; gingival sulcus

ncbi_organism_name: Ottowia sp. oral taxon 894

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Comamonadaceae;g__Ottowia;x__unclassified Ottowia;s__Ottowia sp. oral taxon 894


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_country: New Zealand

ncbi_isolation_source: bacteriocyte

ncbi_organism_name: Candidatus Stammera capleta

ncbi_submitter: University of Luxembourg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_country: China

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter cinaedi


ncbi_isolation_source: whole mosquito body

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: The Pennsylvania State University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Cardiobacterium sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Micromonospora sp. M12

ncbi_submitter: Leiden University


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-E2

ncbi_submitter: Arkin Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-234

ncbi_submitter: Broad Institute


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Norway

ncbi_isolation_source: Human

ncbi_organism_name: Brucella melitensis

ncbi_submitter: NORWEGIAN INSTITUTE OF PUBLIC HEALTH


ncbi_assembly_name: IMG-taxon 2636416017 annotated assembly

ncbi_organism_name: Pseudomonas azotoformans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Japan: Tondabayashi

ncbi_isolation_source: laboratory experiment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Osaka Ohtani University


ncbi_country: United Kingdom:Brighton

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Phenylobacterium sp. Root1290

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BGI-Shenzhen


ncbi_country: Italy

ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: CRC RESIST


ncbi_country: Finland

ncbi_isolation_source: Finland

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: UiT The Arctic University of Norway


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: coastal sediment

ncbi_organism_name: Thermodesulfovibrionia bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Michigan

ncbi_isolation_source: urine

ncbi_submitter: JCVI


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Halothiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Methylobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Caecum

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes shahii

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Switzerland: Lullier

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: sludge

ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: Graduate School


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Helicobacter pylori X47-2AL

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Segatella baroniae


ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Australia: Sydney

ncbi_submitter: The University of Sydney


ncbi_country: USA

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM3042

ncbi_submitter: IGS


ncbi_organism_name: Paraburkholderia phenoliruptrix

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes Lm_1840

ncbi_submitter: University of Milan


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0382R

ncbi_submitter: Broad Institute


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: France: Marseille

ncbi_organism_name: Faecalibacterium sp. Marseille-Q0746

ncbi_submitter: Institut hospitalo-universitaire en maladies infectieuses de Marseille


ncbi_country: USA: New York City

ncbi_isolation_source: Rectal carriage

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Microbacterium aurantiacum

ncbi_submitter: University of California San Diego


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_isolation_source: blood from hospitalized preterm neonate

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in St. Louis


ncbi_assembly_name: Escherichia coli ST95 strain KCRI-554

ncbi_isolation_source: diarrhoeal stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Korea University


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: Arsenicicoccus sp. UBA2120


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chryseolinea sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China

ncbi_isolation_source: mesophilic anaerobic digestion

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis priestleyi ANA and associated heterotrophs

ncbi_organism_name: Roseibaca calidilacus

ncbi_submitter: Pacific Northwest National Laboratroy


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA722

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA722


ncbi_country: India

ncbi_isolation_source: Rhizosphere sample

ncbi_organism_name: Paenibacillus sp. A3

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: Throat swab 22

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_country: USA: Alabama

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: Auburn University


ncbi_country: Japan: Yokohama

ncbi_isolation_source: gut tissue

ncbi_organism_name: Apibacter sp. ESL0404

ncbi_submitter: University of Lausanne


ncbi_organism_name: uncultured Dokdonella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolate: AOP1_H1_surf _bin _13

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP1_H1_surf _bin _13

ncbi_submitter: Genoscope


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Sulfurospirillum sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Alectryocaccobium sp.

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Alectryocaccobium;x__unclassified Candidatus Alectryocaccobium;s__Candidatus Alectryocaccobium sp.


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: skin

ncbi_organism_name: Salinicoccus roseus

ncbi_strain_identifiers: ACRSJ

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Roseburia sp.


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: soil

ncbi_organism_name: Paraburkholderia terrae

ncbi_submitter: Department of Life Science & Biotechnology, Kansai University


ncbi_organism_name: Lentzea sp. NPDC034063

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA44511

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Sphingopyxis granuli

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Thiomargarita sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_organism_name: Lonsdalea britannica

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Neisseria sp. HMSC064E01

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Sphingobacterium sp.


ncbi_isolation_source: aquatic metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: South Korea

ncbi_organism_name: Echinicola strongylocentroti

ncbi_submitter: National Marine Biodiversity Institute of Korea


ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: swine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Portugal

ncbi_isolation_source: sea water

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: CENTRE OF MARINE SCIENCES


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella oxytoca


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: NeiMonggal

ncbi_isolation_source: diseased goat

ncbi_organism_name: Brucella melitensis bv. 1

ncbi_submitter: National Institute for Communicable Disease Control & Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: freshwater

ncbi_organism_name: Flavobacterium sp. UBA6721

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Macellibacteroides fermentans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Freshwater Fisheries Research Institute of Jiangsu Province


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Switzerland:Agroscope Lab; Liebefeld

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: Atlantic Ocean

ncbi_isolation_source: soil sediment

ncbi_organism_name: Exiguobacterium sp. s196

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s196


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG13857

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: University of Georgia


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: India

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.


ncbi_assembly_name: Rumen uncultured genome RUG14000

ncbi_organism_name: Selenomonas ruminantium


ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Jinhua

ncbi_isolation_source: fecal swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_submitter: the seqafrica consortium


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Rugamonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Phyllobacteriaceae bacterium


ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: North South University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Klebsiella sp. 92188

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: sputum

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_isolation_source: marine

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Italy: Gulf of Naples

ncbi_isolation_source: marine sediment

ncbi_organism_name: Alkaliphilus sp. NP8

ncbi_submitter: Stazione Zoologica Anton Dohrn


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: Federal University Lafia


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: cold seep

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Lactobacillales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_assembly_name: Rumen uncultured genome RUG14879

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Philippines

ncbi_isolation_source: Wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_assembly_name: Pectobacterium wasabiae CFIA1002

ncbi_country: Canada: Alberta

ncbi_organism_name: Pectobacterium parmentieri CFIA1002

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-3-2-15-A-LB2

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Havana


ncbi_country: South Korea:Wanju-Gun

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Anaerocolumna sp. AGMB13025

ncbi_submitter: Korean Research Institute of Bioscience and Biotechnology


ncbi_country: Yugoslavia

ncbi_organism_name: Pseudomonas amygdali pv. ulmi

ncbi_strain_identifiers: ICMP 3962

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. ulmi


ncbi_organism_name: Arthrobacter russicus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Akkermansia sp. AE01SA01

ncbi_submitter: Duke University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Thermus scotoductus SA-01

ncbi_submitter: Georg-August-University Goettingen


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Hubei

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Candidatus Limimorpha avicola

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;s__Candidatus Limimorpha avicola


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: EMG


ncbi_isolation_source: skin; soft tissue infection


ncbi_isolation_source: Clinical; infected tissue of tibial fracture

ncbi_organism_name: Burkholderia stabilis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China: Yellow Sea

ncbi_organism_name: Vibrio sp. A1-1

ncbi_submitter: shandong university


ncbi_country: Hong Kong

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: HKU


ncbi_country: USA: New York

ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae NYC_2011_05_07

ncbi_submitter: Read Laboratory, Emory University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus swezeyi

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas putida


ncbi_organism_name: Yoonia rhodophyticola

ncbi_submitter: Chung-Ang university


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Lithuania

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;s__Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_02_FULL_43_16


ncbi_country: Japan: Horonobe URL

ncbi_submitter: UC Berkeley


ncbi_country: Poland

ncbi_organism_name: Brucella abortus 63/59

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_isolation_source: Stanley WWTPs_12 WWTPs influent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Forsyth Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: PA

ncbi_isolation_source: porcine pig intestine small

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Italy

ncbi_isolation_source: pets

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Bologna


ncbi_organism_name: Paenirhodobacter enshiensis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_organism_name: Atlantibacter hermannii


ncbi_country: Mexico: Baja California Sur; Santa Maria Bay

ncbi_organism_name: Ensifer aridi

ncbi_submitter: Dr. Antoine Le Quere


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Sutterella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Ansan

ncbi_organism_name: Clostridium sp. AWRP

ncbi_strain_identifiers: AWRP

ncbi_submitter: Korea Insitute of Ocean Science and Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alcanivorax sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Rhodospirillum sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: VA

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: US Food and Drug Administration


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Dechloromonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Lentzea sp. NPDC020367

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_country: Thailand: Nong Khai

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: AIT Austrian Institute of Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of South Australia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chulalongkorn University


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Proteus vulgaris

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Erythrobacteraceae bacterium UBA5093

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Arthrobacter glacialis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_organism_name: Actinobacillus suis

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_organism_name: Parabacteroides sp. OF04-13BH

ncbi_submitter: BGI


ncbi_assembly_name: freshwater MAG --- AM_bin-2233

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Arctic Ocean

ncbi_isolation_source: beach

ncbi_organism_name: Polaribacter sp. L3A8

ncbi_submitter: Shandong University


ncbi_country: Kenya

ncbi_isolation_source: symptomatic geranium  Americana Dark Red  plant

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: cBio Corp


ncbi_country: Spain: Asturias

ncbi_organism_name: Acidipropionibacterium jensenii

ncbi_submitter: Universidad de Leon (Spain)


ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;x__unclassified Candidatus Fermentibacteraceae;s__Candidatus Fermentibacteraceae bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Mediterraneibacter hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis ERV65

ncbi_submitter: Washington University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG234

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Computational Biology and Microbial Ecology


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Litorivivens sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Serratia sp. CY32813

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY32813


ncbi_organism_name: uncultured Aquiluna sp.

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Aquiluna;x__environmental samples;s__uncultured Aquiluna sp.


ncbi_organism_name: Collinsella sp. SGI.241

ncbi_submitter: University of Manitoba


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: EPFL


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: Malaysia

ncbi_isolation_source: Malaysia

ncbi_organism_name: Leptospira weilii

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: WA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Belgium

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_country: Gambia

ncbi_isolation_source: NP swab

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: USA: MS

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Transconjugant 6A

ncbi_submitter: Univ Mississippi Medical Center


ncbi_country: United Kingdom

ncbi_isolation_source: Genital Tract

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_submitter: The University of Sydney


ncbi_organism_name: Lactobacillus kimbladii


ncbi_country: Indian Ocean

ncbi_isolation_source: sea water [ENVO:00002149]

ncbi_organism_name: Qipengyuania pelagi

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Pseudoalteromonas sp.


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Dyella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces sp. M10(2022)

ncbi_submitter: Leiden University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Pakistan: Sindh

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: India


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Megasphaera lornae

ncbi_submitter: J. Craig Venter Institute


ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_isolation_source: wastewater

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: Germany

ncbi_isolation_source: animal

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Kiel University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pantoea sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Stenotrophomonas bentonitica


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (64um filter)

ncbi_organism_name: Vibrio breoganii ZF-55

ncbi_submitter: MIT


ncbi_submitter: Hopital Bicetre


ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: South Korea: Jeollanamdo

ncbi_isolation_source: leaf

ncbi_organism_name: Paracidovorax citrulli

ncbi_submitter: Kangwon National University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Stenotrophomonas muris

ncbi_submitter: Fujita Health University School of Medicine


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-1225

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: seawater

ncbi_organism_name: Halioglobus japonicus

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Mali

ncbi_isolation_source: breast milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IHU Genomes


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_assembly_name: IMG-taxon 2687453721 annotated assembly

ncbi_organism_name: Pseudomonas sp. BS3759

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Malan

ncbi_organism_name: Janibacter melonis

ncbi_submitter: BGI-Qingdao


ncbi_organism_name: uncultured Tissierella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: Sil MILK 5

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: EMG


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_country: Chile: Region del Maule; Estero Los Robles

ncbi_isolation_source: termite gut

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Aliidongia sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6545

ncbi_submitter: Ministry of Science and Technology of China


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Pseudomonas sp. F(2018)

ncbi_submitter: University of Trento


ncbi_country: South Africa: South Atlantic ocean

ncbi_isolation_source: Fish

ncbi_organism_name: Chryseobacterium piscium

ncbi_submitter: University of the Free State


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium CG_4_10_14_3_um_filter_33_21


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: Sinus

ncbi_organism_name: Pasteurella multocida subsp. septica

ncbi_submitter: INRA


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_country: USA: Great Salt Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Canada: British Columbia

ncbi_isolation_source: a healthy broiler chicken at farm

ncbi_organism_name: Escherichia fergusonii ECD227

ncbi_submitter: McGill University, Canada


ncbi_organism_name: Streptomyces sp. NPDC005761

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_organism_name: Escherichia coli O69:H11 str. 06-3325

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O69:H11;x__Escherichia coli O69:H11 str. 06-3325


ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: Baylor College of Medicine


ncbi_country: Cameroon: Boteva

ncbi_isolation_source: Cocoyam rhizosphere (white)

ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: KU Leuven


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aggeu Magalhaes Institute


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Chitinophagia bacterium

ncbi_submitter: Michigan State University


ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_isolation_source: Egyptian Hard Cheese

ncbi_organism_name: Enterococcus durans

ncbi_strain_identifiers: OSY-EGY

ncbi_submitter: The Ohio State University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Campbelliibacteriota;s__Candidatus Campbellbacteria bacterium GW2011_GWC2_35_28


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_submitter: Instituto de Higiene, Facultad de Medicina

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Lacunisphaera sp.

ncbi_submitter: Monash University


ncbi_organism_name: Arenicella sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Gallionella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: ZC4 (Zoo Composter number 4) at the Sao Paulo Zoo

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Bacteroidales bacterium


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Pyxidicoccus sp. 3LFB2

ncbi_submitter: Hellenic Pasteur Institute


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: USA: MD

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Ec26A_L1 MIRA assembly

ncbi_organism_name: Escherichia coli

ncbi_submitter: CGS-GL


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG13617

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Lachnospiraceae bacterium 62-26

ncbi_submitter: Nanjing University


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Schaalia dentiphila ATCC 17982

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wyoming


ncbi_isolation_source: feces

ncbi_organism_name: Merdimonas faecis

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Salmonella enterica CVM 43794 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: Ireland

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Merdibacter sp.


ncbi_assembly_name: Rumen uncultured genome RUG600

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_submitter: University of Zurich


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: sputum of adult cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Inner Mongolia Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Streptomyces sp. NPDC059701

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. SAL04277

ncbi_submitter: Zhejiang university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Phormidium sp. FACHB-592

ncbi_submitter: South China Normal University


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: seaweed

ncbi_organism_name: Putridiphycobacter roseus

ncbi_submitter: Shandong University


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Zhejiang University


ncbi_organism_name: Helicobacter pylori SA227C

ncbi_submitter: MHH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: MAMI


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: China agricultural university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: gut

ncbi_organism_name: Coprococcus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Charlotte; NC

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_isolation_source: physical


ncbi_country: Canada:Athabasca Oil Sands

ncbi_isolation_source: waste water

ncbi_organism_name: Gallionellaceae bacterium UBA2239


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;s__Candidatus Collierbacteria bacterium CG_4_9_14_3_um_filter_43_16


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces werraensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: Chile: Chillan

ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Sao Paulo


ncbi_country: South Korea: Jeollabuk-do; Gunsan-si

ncbi_isolation_source: Oil contaminated soil

ncbi_organism_name: Sphingomonas naphthae

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EMG


ncbi_country: Algeria

ncbi_isolation_source: nasal carriage

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Pacific Ocean

ncbi_organism_name: Salipiger profundus

ncbi_submitter: State Key Laboratory for Marine Environmental Science, Xiamen University, Xiamen, FuJian 361005, P.R. China


ncbi_isolate: Desulfoluna butyratoxydans MSL71

ncbi_organism_name: Desulfoluna butyratoxydans

ncbi_strain_identifiers: Desulfoluna butyratoxydans MSL71

ncbi_submitter: WAGENINGEN UNIVERSITY


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Fodinicurvata fenggangensis DSM 21160

ncbi_submitter: DOE Joint Genome Institute