ncbi_submitter: Sichuan University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Arizona

ncbi_genome_representation: full

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


gtdb_representative: t

ncbi_assembly_name: freshwater MAG --- Ki1-1-6m_bin-0573

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: rabbit gut

ncbi_organism_name: Mediterranea massiliensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,12:b:-


ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_level: Scaffold

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Temuco

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Livestock Mission, DAHD; AINP on AMR (INFAAR)


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Micrococcaceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: metagenome

ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Liaoning

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Palmer LTER


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Complete Genome

ncbi_country: China: Pearl River estuary

ncbi_isolation_source: seawater

ncbi_organism_name: Cognatishimia activa

ncbi_strain_identifiers: SOCE 004

ncbi_submitter: Jinan University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_country: Spain: Loriguilla Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechococcus lacustris L1E-Slac

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- AM_bin-1585

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: BILS


ncbi_country: Belgium

ncbi_isolation_source: Vitamin B2 feed additive

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Sciensano


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UFMG


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Clostridium] leptum


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11393

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Hoylesella enoeca

ncbi_submitter: EMG


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Altibacter sp.

ncbi_submitter: Radboud University Nijmegen


ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: The First Hospital of Jilin University


ncbi_country: India: Vellore

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: CMC, Vellore


ncbi_assembly_name: Rumen uncultured genome RUG10484

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0036

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_assembly_name: Rumen uncultured genome RUG391

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Anaerococcus vaginalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Micromonospora sp. NPDC051227

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Bacillus cereus group sp. BC70

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC70


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDX8P114P-2

ncbi_submitter: South China Agricultural University


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Streptomyces sp. Tue6028

ncbi_submitter: BGI Research


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University


ncbi_country: Canada: Quebec

ncbi_isolation_source: combination of 24 samples (8 from lake Croche; 8 from Montjoie and 8 from Simoncouche) collected from 2013 through 2014

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Joint Genome Institute


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Eubacterium ramulus


ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Nocardia sp. NPDC058705


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Bacillus pumilus


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Arizona


ncbi_organism_name: Actinophytocola sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: National Vererinary Research Intitute


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Enterobacter sp. AC1

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: agarose-chitosan mix 40-100 m particle (artificial) late colonization

ncbi_organism_name: Celeribacter halophilus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Actinomyces graevenitzii

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Chile: Antarctic territory

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. K2I17

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. K2I17


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Canada: Qubec

ncbi_isolation_source: Imported/domestic retail Oyster

ncbi_organism_name: Vibrio antiquarius

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio antiquarius


ncbi_organism_name: Kaistella carnis


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lactobacillus gasseri SV-16A-US

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudomonadaceae bacterium UBA7806

ncbi_submitter: University of Queensland


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Moredun Research Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Viet Nam

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Liverpool


ncbi_country: Czech Republic

ncbi_isolation_source: liver

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium RIFOXYD1_FULL_39_35


ncbi_country: Malaysia: Johor; Port of Tanjung Pelepas

ncbi_isolation_source: ballast water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Universiti Kebangsaan Malaysia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Rhodococcus opacus

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Peptoniphilus sp.

ncbi_submitter: University of California, Davis


ncbi_country: China: Xiahe County; Gansu Province

ncbi_isolation_source: Kurut

ncbi_organism_name: Lentilactobacillus dabitei

ncbi_refseq_category: reference genome

ncbi_submitter: Inner Mongolia Agricultural University

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Henan

ncbi_organism_name: Escherichia sp. XD11

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Faecalibacterium gallinarum

ncbi_submitter: Laboratory of Food Chemistry, Department of Food, aroma and Cosmetic Chemistry, Faculty of Bioindustry, Tokyo University of Agriculture


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: International Space Station

ncbi_organism_name: Methylobacterium ajmalii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1457


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CDC


ncbi_isolation_source: Environmental; water

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_isolation_source: In-house environment

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: South China Agricultural University


ncbi_country: China: Liaoning province

ncbi_isolation_source: secretion

ncbi_organism_name: Enterococcus faecium


ncbi_assembly_name: IMG-taxon 2602042066 annotated assembly

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptomyces zaomyceticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: South Africa: Durban

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of KwaZulu Natal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Wenzhou Medical University


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: UNESP-FCAV


ncbi_country: Japan

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_AE_5

ncbi_organism_name: uncultured Granulicella sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_organism_name: Salmonella sp. NW51

ncbi_submitter: Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Harvard University


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hospital Infantil de Mexico Federico Gomez


ncbi_organism_name: Williamsia sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Planctomicrobium sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Jiangnan University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Battelle Memorial Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Nanjing University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M025S2

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: bile

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Indonesia

ncbi_isolation_source: potato

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Virginia Tech


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: Environmental sponge

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Petrimonas sp.

ncbi_submitter: University of Iowa


ncbi_country: Australia

ncbi_isolation_source: cheese

ncbi_organism_name: Lacticaseibacillus casei

ncbi_strain_identifiers: GCRL 163

ncbi_submitter: University of Tasmania


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Mpumalanga

ncbi_organism_name: Bradyrhizobium sp. Mp64

ncbi_submitter: University of Pretoria


ncbi_country: Tanzania

ncbi_isolation_source: Perineal

ncbi_organism_name: Staphylococcus cohnii subsp. cohnii

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;x__Staphylococcus cohnii species complex;s__Staphylococcus cohnii;sb__Staphylococcus cohnii subsp. cohnii


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Italy: Agugliaro (VI)

ncbi_isolation_source: intestine content

ncbi_organism_name: Clostridium botulinum C/D

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: China: Xinjiang Province; Urumqi

ncbi_isolation_source: mutton

ncbi_organism_name: Moellerella wisconsensis

ncbi_submitter: Yangzhou University


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Sulfurospirillum sp.

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Taiwan

ncbi_isolation_source: bone marrow

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Jiangnan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Rizhao; Shangdong Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Peribacillus simplex

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Lysobacterales bacterium PRO7

ncbi_submitter: Peking University


ncbi_country: China: Taian

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces rhizosphaericus

ncbi_submitter: Shandong Agricultural University


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: IPV-CT 62.4

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Synechococcus sp. W65.1

ncbi_submitter: University of Montana


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xiangya hospital, Central South University


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Kitasatospora sp. NPDC058162

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Salmonella sp. SAL04155

ncbi_submitter: Zhejiang university


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. 184

ncbi_submitter: Hebei University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: University of Southern California

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Bacteroides uniformis


ncbi_isolation_source: marine

ncbi_organism_name: Octadecabacter sp.

ncbi_submitter: University of Queensland


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1565


ncbi_country: USA: Oak Ridge; Tennessee

ncbi_isolation_source: pristine sediments collected from the background area of the Field Research Center

ncbi_organism_name: Pelosinus sp. UFO1

ncbi_submitter: Oak Ridge National Lab


ncbi_organism_name: Dermatophilaceae bacterium Soc4.6

ncbi_submitter: Universidad Autonoma de Chile


ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Universidad Nacional de La Plata


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: France: Nantes

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidade Federal do Rio Grande do Norte


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: MD

ncbi_isolation_source: Dietary Supplements

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: uncultured Denitrobacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Israel

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: SC


ncbi_submitter: University College Dublin


ncbi_assembly_level: Chromosome

ncbi_country: USA:Florida; Long Key

ncbi_organism_name: Verrucosispora sp. WMMA2044

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: caecum

ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: PA

ncbi_isolation_source: intestine porcine (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Acetobacterium sp.

ncbi_submitter: University of Calgary


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: sputum


ncbi_country: Japan

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Toho university


ncbi_country: Germany: Hainich National Park; Hainich Critical Zone Exploratory

ncbi_isolation_source: groundwater from well H41 incubated with 12C bicarbonate for 70 days

ncbi_organism_name: Vitreoscilla sp.

ncbi_submitter: Friedrich Schiller University Jena


ncbi_country: China: Gobi Desert

ncbi_isolate: GDC bin6

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: GDC bin6

ncbi_submitter: Monash University


ncbi_country: Japan: Gifu

ncbi_isolation_source: lymph nodes

ncbi_organism_name: Mycolicibacterium peregrinum

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Zimbabwe

ncbi_isolation_source: lettuce field

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: University Claude Bernard Lyon 1

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: China: Sichuan

ncbi_isolation_source: feces from healthy juvenile

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Research and Development Center


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_country: Denmark

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_organism_name: Gardnerella vaginalis 1400E

ncbi_submitter: Center for Genomic Sciences, Allegheny-Singer Research Institute


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Subdoligranulum variabile

ncbi_submitter: University of Alberta


ncbi_organism_name: Pseudoclavibacter terrae

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Nostoc sp. UHCC 0870

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;s__Nostoc sp. UHCC 0870


ncbi_country: Denmark: Copenhagen Zoo

ncbi_organism_name: Psittacicella gerlachiana


ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_submitter: FNX (French Network on xanthomonads)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Texas

ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Micromonospora zamorensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_isolation_source: sourdough

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D1_bin-0853

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Germany

ncbi_isolation_source: human

ncbi_submitter: University clinic Muenster


ncbi_isolation_source: wastewater

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The Helmholtz Centre of Environmental Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Wujia sp.

ncbi_submitter: UIUC


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Tongji University


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Chromatiales bacterium


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Streptomyces asoensis


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: respiratory

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Microbacterium luteolum

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: USA: NY

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Pakistan

ncbi_isolation_source: fecal sample

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: patient

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shandong University


ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Nonomuraea sp. NPDC005501

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_organism_name: Faecalibaculum rodentium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Erwinia billingiae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_country: Mexico: Yucatan

ncbi_organism_name: Escherichia coli

ncbi_submitter: CINVESTAV-IPN


ncbi_country: Greece: Epirus

ncbi_isolation_source: artisanal Greek feta cheese

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: USA: Philadelphia

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Pennsylvania


ncbi_country: Russia: Kazan

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Kazan Federal University


ncbi_isolation_source: Rectum

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp6 AA56

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp6 AA56

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Ethiopia

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Candidatus Aphodovivens avicola

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__;f__;g__Candidatus Aphodovivens;s__Candidatus Aphodovivens avicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;x__Coriobacteriia incertae sedis;g__Candidatus Aphodovivens;s__Candidatus Aphodovivens avicola


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudoduganella plicata

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California, Davis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyushu University Graduate school of medical sciences, department of Bacteriology


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Fish hatchery

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_country: Canada: Lacombe

ncbi_organism_name: Mobiluncus porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Russia: Moscow

ncbi_isolation_source: lumbar liquor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_submitter: University of Edinburgh


ncbi_country: China

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Chlamydia gallinacea

ncbi_submitter: Yangzhou University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: stool

ncbi_submitter: Wroclaw University of Environmental and Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Tongji University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Erysipelothrix sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Tang lab


ncbi_country: Egypt

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: Toho University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: EMG


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia pseudotuberculosis


ncbi_country: USA: NY

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Streptomyces xantholiticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Russia


gtdb_type_species_of_genus: t

ncbi_organism_name: Sutcliffiella cohnii NBRC 15565

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Sutcliffiella;s__Sutcliffiella cohnii;x__Sutcliffiella cohnii NBRC 15565


ncbi_country: USA: Maine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Candidatus Bathyarchaeia archaeon

ncbi_taxonomy_unfiltered: d__Archaea;x__Thermoproteati;p__Candidatus Bathyarchaeota;c__Candidatus Bathyarchaeia;x__unclassified Candidatus Bathyarchaeia;s__Candidatus Bathyarchaeia archaeon


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: feces

ncbi_organism_name: Eggerthellaceae bacterium zg-893

ncbi_submitter: China CDC


ncbi_isolation_source: hyperthermophilic anaerobic system

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Canada: Alberta

ncbi_isolation_source: heart biopsy

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella sp. S139_57379


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Poland

ncbi_organism_name: Providencia sp. wls1950

ncbi_submitter: NanKai universit


ncbi_isolation_source: faecal


ncbi_country: China: Guangxi; Dashan

ncbi_organism_name: Candidatus Acididesulfobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acididesulfobacter;x__unclassified Candidatus Acididesulfobacter;s__Candidatus Acididesulfobacter sp.


ncbi_organism_name: Pseudoalteromonas sp. CH_XMU1449-3

ncbi_submitter: Third Institute of Oceanography


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_country: China: Qingdao

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shandong University


ncbi_country: Mexico: Chihuahua

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: India

ncbi_isolation_source: Aquarium water

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: CSIR-National Environmental Engineering Research Institute (CSIR-NEERI)


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_isolation_source: abortion

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolate: VTEC

ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Microbacterium dextranolyticum


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Prevotella melaninogenica


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: Wound swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SurvCARE


ncbi_organism_name: Gordonibacter urolithinfaciens

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Bacillus cereus BDRD-ST26

ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus BDRD-ST26


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Phycisphaerales bacterium UBA2421

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_submitter: University of South Africa


ncbi_country: South Korea:Daejeon

ncbi_isolation_source: Compost at a cattle farm

ncbi_organism_name: Cellulomonas chitinilytica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coriobacteriaceae bacterium AM110-72

ncbi_submitter: BGI-Shenzhen


ncbi_country: Japan

ncbi_organism_name: Streptobacillus moniliformis

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Candidatus Limihabitans stercoravium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limihabitans;s__Candidatus Limihabitans stercoravium


ncbi_country: China: Xiabancheng town; Chengde city; Hebei province

ncbi_isolation_source: pit mud for baijiu fermentation

ncbi_organism_name: Clostridium sp. BJN0001

ncbi_submitter: Beijing Technology and Business University


ncbi_country: Czech Republic

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Gar RS 10

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F46632

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Darwin; Northern Territory

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Menzies School of Health Research


ncbi_organism_name: Agathobacter rectalis


ncbi_country: China: Beijing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_country: Netherlands: Groningen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: unverisity medical center groningen


ncbi_isolation_source: hydrocarbon-based environmental material [ENVO:2000045]|surface soil [ENVO:02000059]

ncbi_organism_name: Gordonia amicalis

ncbi_submitter: Institute for Microbial Systems and Society


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University


ncbi_organism_name: Streptomyces sp. NPDC088762

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Microcystis panniformis

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Ireland

ncbi_isolation_source: Food and food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: EPFL


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_submitter: Portland State University


ncbi_isolation_source: artificial municipal wastewater in bioreactor

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Peking University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Russia

ncbi_isolation_source: feces of a 19-year-old female

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. SARA37


ncbi_country: Austria

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_country: Taiwan

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_country: USA: Manhattan; KS

ncbi_isolation_source: Probiotic

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Kansas State University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia singularis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 6-175-07_S4_C1

ncbi_submitter: IGS


ncbi_organism_name: Nocardioides daedukensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Utah

ncbi_organism_name: Francisella tularensis subsp. tularensis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Borreliella garinii

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands: Pieterburen

ncbi_organism_name: Campylobacter blaseri

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China

ncbi_isolation_source: tobacco waste

ncbi_organism_name: Arthrobacter sp. M2012083

ncbi_submitter: State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Marivita sp.

ncbi_submitter: BiOSSE


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research - HZI


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: South Korea

ncbi_organism_name: Sphingomonas dokdonensis

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Lachnoanaerobaculum sp.

ncbi_submitter: EMG


ncbi_country: Finland: Helsinki

ncbi_isolation_source: Pork and beef meat

ncbi_organism_name: Leuconostoc gelidum subsp. gelidum

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;x__Leuconostoc gelidum group;s__Leuconostoc gelidum;sb__Leuconostoc gelidum subsp. gelidum


ncbi_country: Australia: VIC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The University of Melbourne


ncbi_country: Canada: Vancouver

ncbi_isolation_source: Ixodes pacificus

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_organism_name: Alphaproteobacteria bacterium UBA6038

ncbi_submitter: University of Queensland


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Qatar: Doha

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Sidra Medicine


ncbi_country: Poland: Suwalki

ncbi_isolation_source: BAL

ncbi_organism_name: Streptococcus sp. 1290

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Japan

ncbi_isolation_source: tracheostomy site

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho university


ncbi_submitter: Christian Medical College


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum


ncbi_country: China: Nanjing; Jiangsu

ncbi_isolation_source: Cervical secretion

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Colon

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Clostridium cuniculi

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterococcus sp. AZ140

ncbi_submitter: Broad Institute


ncbi_organism_name: Peribacillus sp. NPDC096540

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Xenorhabdus bovienii

ncbi_strain_identifiers: texanum MC_15

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Korea: Goyang-si

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Korea Disease Control and Prevention Agency


ncbi_isolation_source: belly lymph node

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_country: Atlantic Ocean: Rainbow deep sea hydrothermal vent field (MAR)

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanibacillus modesticaldus

ncbi_strain_identifiers: BR

ncbi_submitter: University of Georgia


ncbi_submitter: China Jiliang University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Serratia fonticola

ncbi_submitter: Federal Research Center for Fundamental and Translational Medicine


ncbi_organism_name: Pseudocolwellia sp. HL-MZ19

ncbi_submitter: Seoul National University


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: DOE JGI


ncbi_assembly_name: Rumen uncultured genome RUG10304

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 404

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 1158

ncbi_submitter: University of Calgary


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: Viet Nam: Ho Chi Minh City

ncbi_isolation_source: urethral exudate

ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: PIHCM 20414

ncbi_submitter: Pasteur Institute of Ho Chi Minh City


ncbi_organism_name: Agathobaculum butyriciproducens


ncbi_country: Belgium: Genth

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyopneumoniae

ncbi_submitter: University of Bern


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cpo012

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Lapillicoccus sp.

ncbi_submitter: Monash University


ncbi_organism_name: Filibacter tadaridae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine


ncbi_country: Mauritius

ncbi_organism_name: Xanthomonas axonopodis pv. vasculorum

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas axonopodis;x__Xanthomonas axonopodis subcluster 9.3;x__Xanthomonas axonopodis pv. vasculorum


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. dysgalactiae


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Rostov State Medical University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Salmonella sp. C3301

ncbi_submitter: Sichuan University


ncbi_country: Canada: Lacombe

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: Dbic

ncbi_isolate: Dbic

ncbi_organism_name: Candidatus Dasytiphilus stammeri

ncbi_strain_identifiers: Dbic

ncbi_submitter: Max Planck Institute for Chemical Ecology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Dasytiphilus;s__Candidatus Dasytiphilus stammeri


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Aquificota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_isolation_source: ballast tank

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Shandong university


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacterium coprostanoligenes

ncbi_submitter: AAFC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Corynebacterium diphtheriae CDCE 8392

ncbi_strain_identifiers: CDCE 8392

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Romania

ncbi_isolation_source: Water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: AR Bank #0346

ncbi_submitter: USDA-ARS


ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE


ncbi_country: China: Guangzhou

ncbi_isolation_source: clinical

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Neisseria viridiae

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: SC


ncbi_country: France: Bretagne

ncbi_isolation_source: Poultry

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: EMG


ncbi_isolation_source: sputum

ncbi_submitter: University of Trento


ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: dairy farm

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: India: Vellore

ncbi_isolation_source: Respiratory specimen

ncbi_submitter: Christian Medical College, Vellore


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: soil

ncbi_organism_name: Sphingomonas sp. KRR8

ncbi_submitter: Chungnam National University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Fusobacterium varium

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: GNS Science


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Isolate 14

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kalmar county hospital


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: invasive

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Cheese rind

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Tufts University


ncbi_country: United Kingdom

ncbi_organism_name: Lawsonia intracellularis

ncbi_submitter: Roslin Institute


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: China: Guangdong

ncbi_submitter: China Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudoalteromonas sp.

ncbi_submitter: EMG


ncbi_country: Chile: Concepcion

ncbi_isolation_source: Salmo salar

ncbi_organism_name: Flavobacterium araucananum

ncbi_submitter: FDA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thalassospira xiamenensis

ncbi_submitter: University of Queensland


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field Eastern mound

ncbi_isolation_source: biosyringe of gray deposit below active venting hydrothermal vent

ncbi_organism_name: Desulfonauticus sp.

ncbi_submitter: University of Bergen


ncbi_country: Mexico

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Northern Atlantic

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-10730

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_country: Thailand: Phaya Thai

ncbi_isolation_source: fresh seafood sold at markets and supermarkets located in Bangkok; Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_organism_name: Caulobacterales bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: bacterium TMED144

ncbi_submitter: University of Southern California


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: heart

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_country: China: Zhejiang

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: zhejiang university


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Curvibacter sp. AEP1-3

ncbi_submitter: Biology Centre CAS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Rumen uncultured genome RUG638

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Neijiang; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_country: Switzerland

ncbi_isolation_source: Penis Swab

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_organism_name: Variovorax boronicumulans

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lysinibacillus sp. RS5

ncbi_submitter: Athabasca University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Science, Vietnam National University Ho Chi Minh City, Ho Chi Minh City, Vietnam


ncbi_organism_name: Streptomyces achromogenes


ncbi_organism_name: Mesobacillus thioparans

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo, A.C. (CIAD)


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__environmental samples;s__uncultured Candidatus Competibacteraceae bacterium


ncbi_organism_name: Methylotuvimicrobium sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Rickettsia sp. 2024-CO-Wats

ncbi_submitter: North Carolina State University, College of Veterinary Medicine


ncbi_organism_name: Kitasatospora sp. NPDC057542

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sphingobacterium faecium

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-255

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: new MAG-255

ncbi_submitter: Micoorganism


ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_organism_name: Merismopediaceae cyanobacterium


ncbi_organism_name: uncultured Bryobacter sp.


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Kenya Medical Research Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG760

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Georgia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Texas A&M University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Nioella sp.

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: Rumen uncultured genome RUG10692

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: rumen

ncbi_organism_name: Ruminococcaceae bacterium UBA2851

ncbi_submitter: University of Queensland


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira;s__Lachnospira hominis (ex Liu et al. 2021)


ncbi_organism_name: Streptococcus agalactiae GB00092

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Brevundimonas sp.


ncbi_country: USA: Colorado

ncbi_organism_name: Bartonella quintana

ncbi_submitter: Division of Vector-Borne Diseases, Centers for Disease Control and Prevention


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: blood from female cancer patient

ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Pig

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Athalassotoga sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_assembly_name: Salmonella enterica CVM N40384-R v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Treponema porcinum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Roseibium sp. MMSF_3361

ncbi_submitter: The University of Melbourne


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Prevotella intermedia

ncbi_strain_identifiers: KCOM 2033

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG14404

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Brazil: Rio de Janeiro

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: FIOCRUZ


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Polaribacter sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Rumen uncultured genome RUG10700

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: marine

ncbi_organism_name: Flavobacteriales bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_submitter: Technical University of the North, Ibarra Ecuador


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Poland

ncbi_isolation_source: rectal swab

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M13060

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Linnaeus University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Ancrocorticia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_organism_name: Rhodococcoides yunnanense

ncbi_strain_identifiers: IEGM 1323

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_organism_name: Devosia sp. 2618

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Rhizobiales bacterium UBA4210


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Chulalongkorn University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_assembly_name: IMG-taxon 2608642108 annotated assembly

ncbi_organism_name: Pantoea eucalypti

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Germany

ncbi_isolation_source: Beer

ncbi_organism_name: Pectinatus haikarae

ncbi_submitter: Genedata


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Bacteroides stercoris


ncbi_country: Poland: Warsaw

ncbi_isolation_source: wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Center for Biotechnology Information


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Haliea sp.


ncbi_country: USA

ncbi_organism_name: Acinetobacter sp. 263903-1

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 263903-1


ncbi_country: South Korea: Gangwon-do; Gonghyeonjinhang

ncbi_organism_name: Tenacibaculum aquimarinum

ncbi_submitter: Chung-Ang university


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_isolation_source: Faeces

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: TX

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China: Qinghai Province

ncbi_organism_name: Cellulomonas dongxiuzhuiae

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Desulfamplus sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Prevotella sp.


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Micrococcus luteus


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Providencia sp. PROV003

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: KAUST


ncbi_organism_name: uncultured Sulfurovum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lentilactobacillus otakiensis

ncbi_submitter: Novonesis A/S


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: UIUC


ncbi_organism_name: Microcystis protocystis FBCC-A270

ncbi_submitter: The Catholic University of Korea