ncbi_country: Slovenia

ncbi_isolation_source: Well water

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DGA CBRN Defence Center


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: HI

ncbi_genome_representation: full

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: rumen

ncbi_organism_name: Alphaproteobacteria bacterium UBA2931

ncbi_submitter: University of Queensland


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Limosilactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Mongolia: Zamyn-Ude

ncbi_organism_name: Yersinia pestis

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing , China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB08-221

ncbi_submitter: Broad Institute


ncbi_assembly_level: Complete Genome

ncbi_country: USA: MN

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_country: Canada: Dunham; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Chryseobacterium rhizosphaerae

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient sediment

ncbi_organism_name: Ruegeria sp. HKCCA4812

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudotabrizicola sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Muribaculaceae bacterium


gtdb_representative: t

ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Wenzhouxiangella sp. EGI_FJ10409

ncbi_submitter: Xinjiang Institute of Ecology and Geography Chinese Academy of Sciences


ncbi_organism_name: Salmonella sp. NW387

ncbi_submitter: Sichuan University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Butyrivibrio sp.


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aeromonas caviae


ncbi_organism_name: Ruminococcus sp.


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Rubrivivax sp.


ncbi_organism_name: Pseudomonas sp. KCJK9000

ncbi_submitter: University of Florida


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 45(2607)

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_assembly_name: Rumen uncultured genome RUG11620

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Formosa sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: California; Eel River; South Fork Eel River near Phillipsville

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Mexico: Valle de Matatipac

ncbi_isolation_source: diseased shrimp hemolymph

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Naval Research Laboratory


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China

ncbi_isolation_source: paddy soil

ncbi_organism_name: Geothrix fuzhouensis

ncbi_refseq_category: reference genome

ncbi_submitter: Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Env

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-110

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_strain_identifiers: new MAG-110

ncbi_submitter: Micoorganism


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O121:H19;x__Escherichia coli O121:H19 str. 2009C-4659


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: Spain

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Calgary


ncbi_country: China: Guangzhou

ncbi_isolation_source: nasal swabs

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EMG


ncbi_isolation_source: ground beef

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Switzerland

ncbi_isolation_source: nose swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_organism_name: uncultured Klebsiella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shenzhen; Guangdong

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium japonicum

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Boston; MA

ncbi_isolation_source: Supragingival dental plaque

ncbi_organism_name: Dialister pneumosintes

ncbi_submitter: The Forsyth Institute


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Jiangxi; Dexing

ncbi_organism_name: Castellaniella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pusillimonas sp. UBA1905

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_isolation_source: Conjunctivitis case

ncbi_organism_name: Haemophilus influenzae biotype aegyptius

ncbi_submitter: Institute of Biology - University of Campinas


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: South Africa: Prince Cyril Zulu CDC

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0036

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_organism_name: Streptococcus orisratti

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Denmark: Esbjerg E

ncbi_isolation_source: activated sludge from EsbE_18-Q3-R3-47

ncbi_organism_name: Propionivibrio sp.

ncbi_submitter: Aalborg University


ncbi_country: Canada: British Columbia; Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: McGill University and Genome Quebec Innovation Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F43221


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Alistipes onderdonkii


ncbi_assembly_name: freshwater MAG --- LinL2_bin-0635

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: BILS


ncbi_country: Germany

ncbi_isolation_source: Trachea

ncbi_organism_name: Rodentibacter trehalosifermentans

ncbi_submitter: University of Copenhagen


ncbi_country: USA:New York

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Enterocloster citroniae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacteroides fragilis


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 69 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Washington DC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_organism_name: Prevotella conceptionensis


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Bioreactor performing anaerobic oxidation of methane coupled to iron reduction

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Limnohabitans sp. Rim8

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_country: Canada: Quebec; Champlain Lake

ncbi_isolation_source: non-axenic culture from freshwater

ncbi_submitter: Universite de Montreal


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Hong Kong

ncbi_isolation_source: feces

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Chitinophagales bacterium


ncbi_country: Portugal: Maranho dam reservoir; Benavila

ncbi_isolation_source: water sample; dam reservoir

ncbi_organism_name: Sphaerospermopsis aphanizomenoides LEGE 00250

ncbi_submitter: CIIMAR


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__environmental samples;s__uncultured Patescibacteria group bacterium


ncbi_country: China: Hunan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Central south university


ncbi_country: USA: IA

ncbi_isolation_source: intestine

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_organism_name: Hyphomonas atlantica

ncbi_submitter: Xiamen University


ncbi_country: China: Guangdong

ncbi_isolation_source: liver

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_isolation_source: Mesenteric lymph node biopsies

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis BCG


ncbi_country: Kenya: Kisumu

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Czech Republic: Sumava forest

ncbi_isolation_source: forest soil

ncbi_organism_name: Caballeronia sordidicola

ncbi_submitter: Institute of Microbiology of the Academy of Sciences of the Czech Republic


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Uppsala University


ncbi_country: USA: Conch Reef; Key Largo; Florida

ncbi_isolation_source: marine sponge

ncbi_organism_name: Micromonospora sp. R42106

ncbi_submitter: Institute of Marine and Environmental Technology


ncbi_country: India: Hosur

ncbi_organism_name: Yersinia pestis 24H

ncbi_submitter: National Centre for Cell Science, Pune - 411007, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 24H


ncbi_organism_name: Bacteroides sp. KG121

ncbi_submitter: University of Florida


ncbi_organism_name: Xanthomonas hortorum pv. hederae

ncbi_strain_identifiers: WHRI 5993

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Comamonas sediminis

ncbi_submitter: Hohai University


ncbi_isolation_source: lake water

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: US DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum;sb__Bifidobacterium longum subsp. infantis;x__Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_assembly_name: Rumen uncultured genome RUG14017

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Candidatus Avelusimicrobium vaccinum

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Auckland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium tetani

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_isolation_source: urine

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Chicken Curry

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_country: China: Jiangsu

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sun-yat Sen University


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Brazil: Sossego; Para

ncbi_isolation_source: copper mine

ncbi_organism_name: Ferroacidibacillus organovorans

ncbi_submitter: Redox


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Mobilibacterium timonense


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Yersinia intermedia

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Salmonella sp. NW952

ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured Isosphaeraceae bacterium


ncbi_organism_name: Psychrobacter sp. TWR1-1-1

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 3601

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin25

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: KAP bin25

ncbi_submitter: Monash University


ncbi_assembly_name: freshwater MAG --- Umea3p1_bin-0256

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_submitter: Umea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Salmonella sp. NW1014


ncbi_isolation_source: human gut

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Nacional del Altiplano Puno


ncbi_organism_name: Ruoffia sp. FAM 26254

ncbi_submitter: Agroscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Ruoffia;x__unclassified Ruoffia;s__Ruoffia sp. FAM 26254


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Ruminococcus sp. UBA4383

ncbi_submitter: University of Queensland


ncbi_submitter: University of Sao Paulo


ncbi_country: Hungary

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Aarhus University


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: washed fiber of faecal sample

ncbi_submitter: Institute of Food Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-b_bin-550

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nodularia sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Chicago

ncbi_isolation_source: resected distal colon tissue

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chicago


ncbi_organism_name: Neisseria sp. HMSC061E12

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Canada: Rivire St-Jean; Gasp; Quebec

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Brazil: Pocon Pantanal

ncbi_isolation_source: Lagoon Sediment

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Federal University of Mato Grosso

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_country: China: Shanxi Province; Jingyang

ncbi_isolation_source: rhizosphere soil in an alfalfa field

ncbi_organism_name: Streptomyces alfalfae

ncbi_submitter: college of life science and technology


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Klebsiella sp. JB_Kp014

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Granulimonas faecalis

ncbi_submitter: Nanjing University


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_assembly_name: freshwater MAG --- Day2-1_bin-272

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: CFBP 8145

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_assembly_name: assembly Pureferm isolate P11

ncbi_isolation_source: Pureferm (The Alchemist s Pantry)

ncbi_submitter: Sciensano


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_country: Russia: Moscow

ncbi_submitter: Kulakov National Medical Research Center for Obstetrics, Gynecology and Perinatology


ncbi_organism_name: Halanaerobium congolense

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Peru

ncbi_isolation_source: kidney/liver

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Tecnologico de la Produccion


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodococcus sp. IEGM1339

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. IEGM1339


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


gtdb_type_species_of_genus: t

ncbi_country: Puerto Rico: Lajas

ncbi_isolation_source: environmental

ncbi_organism_name: Solirubrum puertoriconensis

ncbi_submitter: UPR- Mayaguez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;x__Cytophagales incertae sedis;g__Solirubrum;s__Solirubrum puertoriconensis


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Cellulosilyticaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Thalassospira sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_assembly_name: freshwater MAG --- KT_bin-2322

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_organism_name: Shewanella sp. 10N.286.45.A1

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Psychrobacter cryohalolentis K5

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Gordonibacter sp. An232A

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: food processing facility

ncbi_organism_name: Microbacterium oxydans

ncbi_submitter: Penn State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Devosia sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_isolation_source: ectosymbiote of a magnetic protist of Mediterranean sea

ncbi_organism_name: Candidatus Desulfarcum epimagneticum

ncbi_submitter: Genoscope CEA


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P68P

ncbi_submitter: South China Agricultural University


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Micrococcus sp. JV4

ncbi_submitter: UEZO


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 103

ncbi_organism_name: Staphylococcus borealis

ncbi_strain_identifiers: SNUC 119

ncbi_submitter: University of Calgary


ncbi_organism_name: Streptomyces sp. NBC_00996

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Svalbard

ncbi_isolation_source: fjord sediment

ncbi_organism_name: Psychrobacter glaciei

ncbi_submitter: Bacterial diversity and its interaction with metals in glacio-marine environment of Arctic


ncbi_organism_name: Paracoccus sp. ME4

ncbi_submitter: Bucknell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. ME4


ncbi_country: China: Shenzhen

ncbi_organism_name: Parabacteroides sp. AM27-42

ncbi_submitter: BGI


ncbi_country: USA: BIFSCo Region 6

ncbi_isolation_source: ground beef

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum;x__Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1677


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: India: Chennai

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium orygis

ncbi_submitter: National institute for research in tuberculosis


ncbi_country: China: Hangzhou

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Chr-JH 2-2

ncbi_submitter: sichuan university


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Wuhan

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agriculture University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: uncultured Woeseia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: feces

ncbi_organism_name: Firmicutes bacterium AF22-6AC

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF22-6AC


ncbi_country: Kenya

ncbi_organism_name: Verrucomicrobia bacterium UBA1067

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA1067


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium


ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Candidatus Palauibacter irciniicola

ncbi_taxonomy: d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter irciniicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter irciniicola


ncbi_country: Indian Ocean

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Palauibacterales bacterium

ncbi_submitter: Universidad de Alicante

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;x__unclassified Candidatus Palauibacterales;s__Candidatus Palauibacterales bacterium


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: China: Zhangzhou City

ncbi_isolation_source: sediments in shrimp culture ponds

ncbi_organism_name: Billgrantia ethanolica

ncbi_submitter: The Third Institute of Oceanography, Ministry of Natural Resources of PR China


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile CD211

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Viet Nam: Dongnai

ncbi_isolation_source: soil

ncbi_organism_name: Mycolicibacterium sp. BiH015

ncbi_submitter: Phenikaa University


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-316-03_S4_C2

ncbi_submitter: IGS


ncbi_country: USA: PA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Terrestrial

ncbi_organism_name: Coleofasciculus sp. FACHB-SPT36

ncbi_submitter: South China Normal University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Desulfovibrio piger


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia: Magnetic Island; QLD

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: bovine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Uganda


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: California

ncbi_submitter: University of Maryland, College Park


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada

ncbi_isolation_source: oral

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Dose Biosystems


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Galway


ncbi_country: USA: North Carolina

ncbi_organism_name: Vibrio metoecus

ncbi_submitter: University of Alberta


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_country: Egypt: Alexandria

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: [Eubacterium] sulci

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Hawaii

ncbi_organism_name: Leptospira noguchii str. 2007001578


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Marinilabiliaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Shewanellaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_organism_name: Terrabacter aeriphilus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Guangzhou

ncbi_isolation_source: soil

ncbi_organism_name: Betaproteobacteria bacterium SCN1

ncbi_submitter: South China University of Technology (SCUT)


ncbi_submitter: Christian Medical College


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: IMG-taxon 2634166351 annotated assembly

ncbi_organism_name: Anaerocolumna aminovalerica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Thailand: Trang

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Ahrensia kielensis DSM 5890

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas sp. CFBP13528

ncbi_submitter: INRA


ncbi_country: India: Chennai

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DR MGR Educational and Research Institute


ncbi_organism_name: Mesorhizobium sp. M0730

ncbi_submitter: Washington State University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Boston Area

ncbi_isolation_source: Leaf Litter

ncbi_organism_name: Curtobacterium sp. MCBA15_001

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG10717

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Iowa State University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F84763

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Manilae;x__Leptospira interrogans serovar Manilae str. M776_fur_mutant


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: USA: Lake Washington

ncbi_organism_name: Flavobacterium sp. 120

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Paraburkholderia strydomiana

ncbi_submitter: University of Illinois at Chicago


ncbi_country: USA: Moline; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhengzhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Canada: Toronto

ncbi_isolation_source: blood

ncbi_organism_name: Eikenella longinqua

ncbi_submitter: Public Health Agency of Canada


ncbi_submitter: The University of Tokyo


ncbi_organism_name: Clostridiales bacterium VE202-13


ncbi_organism_name: Streptococcus canis

ncbi_submitter: University of Glasgow


ncbi_country: USA: Durham; NC

ncbi_organism_name: Corynebacterium sp. MSK004

ncbi_submitter: Duke University


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Ottawa


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: IMG-taxon 2684622910 annotated assembly

ncbi_organism_name: Chryseobacterium oleae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus argensis

ncbi_submitter: BGI


ncbi_country: Italy: Sardinia; Vilasimius

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: University of Minneosta


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Acinetobacter radioresistens


ncbi_organism_name: uncultured Alistipes sp.


ncbi_submitter: IEM RAMS


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Erythrobacteraceae bacterium UBA5049

ncbi_submitter: University of Queensland


ncbi_country: Taiwan

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: National Chung Cheng University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: France

ncbi_organism_name: Solidesulfovibrio alcoholivorans DSM 5433

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Colombia: Medellin

ncbi_organism_name: Leptospira santarosai str. JET

ncbi_strain_identifiers: JET

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Genskey


ncbi_submitter: Aalborg University


ncbi_organism_name: Stenotrophomonas sepilia

ncbi_submitter: Jawaharlal Nehru University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: University Hospital of Dusseldorf


ncbi_organism_name: uncultured Leptotrichia sp.


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae UCI 34

ncbi_strain_identifiers: UCI 34

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae UCI 34


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium CG1_02_43_31


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Ascidiaceihabitans sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Coprococcus sp. HPP0074


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides caecimuris


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Lederbergia ruris

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: skin infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Priestia flexa

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: China: Taizhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG168

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG12610

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Italy

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: Pseudomonas syringae

ncbi_strain_identifiers: NCPPB 3871

ncbi_submitter: New Zealand Institute for Plant & Food research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: Clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Russia: Republic of Tatarstan; Kazan

ncbi_isolation_source: potato phillosphere

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_strain_identifiers: GM

ncbi_submitter: Kazan Federal University


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Walailak University


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Amedibacillus dolichus

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium RIFCSPLOWO2_01_FULL_42_41


ncbi_organism_name: Fusobacterium mortiferum ATCC 9817

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Denmark: Hygum

ncbi_isolation_source: surface soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Copenhagen


ncbi_country: USA: North Colorado Medical Center

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: surface swab

ncbi_organism_name: Comamonas aquatica

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: USA: Missouri

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_country: Hungary

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus group sp. N14

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. N14


ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: University of Toronto


ncbi_isolation_source: Seawater

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Instituto de Quimica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: USA: Seattle

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Switzerland

ncbi_isolation_source: carcasses

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Enterobacterales bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Halobacteriovoraceae bacterium

ncbi_submitter: Tsinghua University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Erciyes Univ. Faculty of Veterinary Medicine


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Colorado State University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Symbiobacterium thermophilum

ncbi_submitter: University Duisburg-Essen


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. MB02u-10

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA

ncbi_isolation_source: rectal swab

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: King's College London


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kampala International University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Qingdao

ncbi_isolation_source: coastal environment

ncbi_organism_name: Microbulbifer sp. RZ01

ncbi_submitter: Marine Carbon Sequestration and Energy Microorganism Group


ncbi_organism_name: Gelidibacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Wound

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_assembly_name: BFZ

ncbi_country: Turkey: Ankara

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Veillonella dispar

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Puyang

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas nicosulfuronedens

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Cleveland; Ohio

ncbi_isolation_source: Left cornea scraping

ncbi_submitter: Case Western Reserve University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Pleurocapsa sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Proteus terrae

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Finland: Helsinki

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Helsinki University


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: fecal sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolate: AOP5_FY1_surf _bin _3

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP5_FY1_surf _bin _3

ncbi_submitter: Genoscope


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Helicobacter typhlonius


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA129

ncbi_submitter: Broad Institute


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus canis

ncbi_submitter: SC


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: India: Uttar Pradesh

ncbi_isolation_source: Pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Oral cavity

ncbi_submitter: Virginia Tech

ncbi_taxonomy_unfiltered: d__Bacteria;x__Fusobacteriati;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium nucleatum;sb__Fusobacterium nucleatum subsp. nucleatum;x__Fusobacterium nucleatum subsp. nucleatum ATCC 25586


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shanghai

ncbi_isolation_source: cerebral-spinal fluid

ncbi_submitter: Zhejiang university school of medicine


ncbi_organism_name: Streptomyces pseudovenezuelae


ncbi_country: Switzerland

ncbi_submitter: University of Bern


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_country: Finland

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Saari 16

ncbi_submitter: University of Helsinki


ncbi_isolation_source: foot culture

ncbi_organism_name: Klebsiella pneumoniae BIDMC 10

ncbi_strain_identifiers: BIDMC 10

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae BIDMC 10


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Mongoliitalea lutea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Commercial cheese starter culture

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: gabuh2107 v01

ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii UH2107

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus LPIH6021

ncbi_submitter: Broad Institute


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Qinghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_country: United Kingdom: England

ncbi_isolation_source: urine

ncbi_submitter: University of Liverpool


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Blautia sp.


ncbi_country: South Korea: Eumseong

ncbi_isolation_source: ginseng seedlings

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: urinary tract

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: South Korea: Busan

ncbi_isolation_source: stool

ncbi_submitter: Korea Centers for Disease Control and Prevention


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Escherichia coli 95.0183

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_name: Rumen uncultured genome RUG10518

ncbi_organism_name: Candidatus Ruminimicrobium bovinum

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Zurich


ncbi_country: USA: Salinas; CA

ncbi_isolation_source: field

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: The Pennsylvania State University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: USA: Cleveland

ncbi_isolation_source: cystic fibrosis isolate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: Candidatus Marisimplicoccus framensis

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Alteromonas australica


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: uncultured Arcobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Brevibacterium otitidis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: RIKEN-BRC


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia

ncbi_isolation_source: Mixed Food

ncbi_submitter: CSIRO


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Calgary; Wastewater treatment plant

ncbi_isolation_source: Wastewater

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Alberta


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Umezawaea tangerina


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. MPR-R2A4

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-2 day 1480

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Germany: Berlin

ncbi_isolation_source: antennae from female Philanthus triangulum

ncbi_organism_name: Candidatus Streptomyces philanthi

ncbi_submitter: University of Utah


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_country: Germany: Tfibingen-Lustnau

ncbi_isolation_source: isolated from samples of activated sludge and of digested anaerobic sludge of a municipal sewage plant

ncbi_organism_name: Aromatoleum anaerobium

ncbi_submitter: The James Hutton Institute


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: catheter

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto de Higiene


ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Costa Rica: Guanacaste Conservation Area

ncbi_isolation_source: pupa

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Luzhou

ncbi_isolation_source: endotracheal tube

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Atlanta

ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae ATL_2011_01_08

ncbi_submitter: Read Laboratory, Emory University


ncbi_country: Puerto Rico

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 17 year old man who was hospitalized in ICU

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_genome_category: derived from single cell

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Nitrosospira multiformis ATCC 25196

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain

ncbi_isolation_source: feces

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Comamonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H2760

ncbi_submitter: Broad Institute


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: University of Georgia


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: City University of Hong Kong


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Colon

ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella sp. 93177

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: China: Guangzhou

ncbi_organism_name: Salmonella sp. L-S2353

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Egypt

ncbi_isolation_source: Ground beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Houston


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Universiteit Antwerpen


ncbi_country: USA

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: JCVI


ncbi_country: USA: Pasadena; CA

ncbi_isolation_source: clean room floor

ncbi_organism_name: Tigheibacillus jepli

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Comamonas thiooxydans

ncbi_strain_identifiers: SCAU 1


ncbi_organism_name: Asticcacaulis sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Commensalibacter communis

ncbi_submitter: ghent university


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B306;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Saccharothrix espanaensis DSM 44229

ncbi_submitter: CeBiTec, Technology Platform Genomics


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Johnsonella sp.

ncbi_submitter: EMG


ncbi_isolation_source: dairy product

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Bioprox


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university


ncbi_assembly_name: freshwater MAG --- AM-2014-D7_bin-081

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Coprococcus phoceensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Rhizobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Liverpool School of Tropical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Carnobacterium jeotgali

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Parma


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- D-1_bin-061

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_country: China: Hangzhou

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Streptomyces canus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Qinghai

ncbi_isolation_source: river bed soil

ncbi_organism_name: Tessaracoccus sp. MC1756

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Japan: Iheya island; Okinawa

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Amycolatopsis iheyensis

ncbi_submitter: Mahidol University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nonomuraea sp. NPDC001636

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_submitter: University of Guelph


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-0755

ncbi_submitter: BILS


ncbi_country: USA: Detroit Medical Center

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: estuary bay water

ncbi_organism_name: Reinekea sp.

ncbi_submitter: Clemson University


ncbi_organism_name: uncultured Sphingobium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Mesomycoplasma conjunctivae

ncbi_submitter: Swiss Institute of Bioinformatics


ncbi_country: USA: IN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Lower Respiratory Tract Secrection

ncbi_submitter: WTSI


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Auburn University


ncbi_isolation_source: clininal isolate from frostbite patient

ncbi_organism_name: Pseudomonas aeruginosa PAb1

ncbi_submitter: The University of Maryland Center For Bioinformatics & Computational Biology


ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_organism_name: Marinobacter adhaerens

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: University of Chicago