ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Pacific Ocean: Western Pacific

ncbi_genome_representation: full

ncbi_isolation_source: sea water

ncbi_organism_name: Alteromonas alba

ncbi_refseq_category: reference genome

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration

ncbi_type_material_designation: assembly from type material


gtdb_representative: f

gtdb_type_species_of_genus: t

ncbi_assembly_level: Contig

ncbi_assembly_name: IMG-taxon 2634166357 annotated assembly

ncbi_organism_name: Paenacidovorax caeni

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Fujita Health University School of Medicine


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Plovdiv


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Chile: Tarapaca Salar de Huasco

ncbi_isolation_source: shallow sediments of the Salar de Huasco lagoon

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1099

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Chesapeake Bay; MD

ncbi_organism_name: Vibrio metoecus

ncbi_submitter: Los Alamos National Laboratory (LANL), National Microbial Pathogen Data Resource (NMPDR)


ncbi_country: USA: Alaska

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Solobacterium sp.


ncbi_isolation_source: Sputum specimen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Taizhou Municipal Hospital affiliated to Taizhou Universtiy


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA7353

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA7353


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Blautia sp. AM29-29

ncbi_submitter: BGI


ncbi_country: Germany

ncbi_isolation_source: Garden pond

ncbi_organism_name: Exiguobacterium undae

ncbi_strain_identifiers: KCTC 3810

ncbi_submitter: Korea Research Institute Bioscience and Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium undae


ncbi_isolation_source: food

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Jiangsu

ncbi_isolation_source: secretion

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Germany: Greifswald

ncbi_organism_name: Desulfobacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Distal colon

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: International Space Station

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Cutibacterium granulosum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3108-1

ncbi_submitter: Broad Institute


ncbi_isolation_source: lettuce

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: RIVM BC 934

ncbi_submitter: TU Muenchen


ncbi_country: Spain: Madrid

ncbi_isolation_source: neonatology unit from Hospital

ncbi_organism_name: Serratia marcescens

ncbi_submitter: IRYCIS


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Zwartia sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Anaerolinea sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Spain: Asturias

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Malawi: Lilongwe

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NORHED grant


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_country: India

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Aeromonas media

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: Skin


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_country: Taiwan

ncbi_isolation_source: human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Havana


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chitinophaga sp. 212800008-4

ncbi_submitter: NASA


ncbi_country: USA

ncbi_isolation_source: hide

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_organism_name: Escherichia fergusonii ATCC 35469

ncbi_strain_identifiers: ATCC 35469T

ncbi_submitter: Genoscope


ncbi_organism_name: Photobacterium damselae

ncbi_submitter: Yellow Sea Fisheries Research Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Brazil: Sao Paulo; Boituva

ncbi_isolation_source: tissue sample

ncbi_submitter: South American Mycobacterium bovis WGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Queensland


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_country: China

ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB09

ncbi_submitter: Soochow University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: China: Suzhou

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: AOP29_B2_surf _bin _12

ncbi_organism_name: Pseudomonas helleri

ncbi_strain_identifiers: AOP29_B2_surf _bin _12


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2724679817 annotated assembly

ncbi_organism_name: Chryseobacterium profundimaris

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Wound EXPLANT HUMERAL STEM

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: American University of Beirut


ncbi_organism_name: Salmonella enterica


ncbi_organism_name: Stellaceae bacterium


ncbi_country: Canada: Guelph

ncbi_isolation_source: Swine manure pit

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Gambia: Basse Santa Su

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: Singapore: Sungei Ulu Pandan; Clementi

ncbi_isolation_source: canal sediment

ncbi_organism_name: Methylomonas sp. UP202

ncbi_submitter: National University of Singapore


ncbi_submitter: Juntendo University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus Mu50-omega


ncbi_country: USA: Michigan

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Wisconsin - Madison


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Mycoplasmopsis felis ATCC 23391

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Salinisphaerales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-3-2-15-C-LB1

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Peru

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: University of Florida MREC


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Geneva University Hospitals


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Michigan


ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: Tsinghua University


ncbi_isolate: Thecaphoricida

ncbi_organism_name: Bacillus pseudomycoides

ncbi_strain_identifiers: Thecaphoricida

ncbi_submitter: Universidad Catolica de Cordoba


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Oxalobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Paraburkholderia nemoris

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin71

ncbi_isolation_source: soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_strain_identifiers: KAP bin71

ncbi_submitter: Monash University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-66

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_strain_identifiers: new MAG-66

ncbi_submitter: Micoorganism


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Chengkuizengella marina

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources of PR China


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. TF11-2AC

ncbi_submitter: BGI


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Colombia

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Australia: Brisbane

ncbi_organism_name: Dorea longicatena

ncbi_submitter: The University of Queensland


ncbi_country: USA: New York City

ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium bovis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Guizhou; Fuquan

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Czech Republic

ncbi_isolation_source: rectum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_country: Netherlands

ncbi_organism_name: Streptobacillus moniliformis

ncbi_strain_identifiers: Kun 3 (RIVM)

ncbi_submitter: Robert Koch Institute


ncbi_country: Panama: Bocas del Toro; Punta Caracol

ncbi_isolation_source: sponge tissue

ncbi_organism_name: bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Switzerland

ncbi_isolation_source: whey (from Emmental)

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: CIRM-BIA 1370

ncbi_submitter: Brigham Young University


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 99b

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_assembly_name: freshwater MAG --- MJ130702A_bin-509

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Mesoplasma melaleucae ATCC 49191


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli K-12

ncbi_submitter: New England Biolabs


ncbi_isolation_source: mouse gut

ncbi_organism_name: Escherichia coli O16:H48

ncbi_submitter: National Microbiology Laboratory at Guelph


ncbi_organism_name: Vreelandella titanicae


ncbi_isolation_source: human blood of bacteremia patient

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_organism_name: Bradyrhizobium sp. 215_C5_N1_2

ncbi_submitter: VIB


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Chitinophaga sp. OAE865

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Mycoplasmoides pneumoniae FH

ncbi_strain_identifiers: FH

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Mycobacterium ostraviense

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Frankia sp. Cas7

ncbi_submitter: Center for Biotechnology, Bielefeld University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: EMG


ncbi_country: Belgium: Ghent

ncbi_organism_name: Microbacterium sp. NFH-22A-Y

ncbi_submitter: Ghent University


ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Quadram Institutte


ncbi_assembly_level: Chromosome

ncbi_country: China: Cangzhou

ncbi_isolation_source: phyllosphere epiphyte

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: China Agricultural University


ncbi_country: Israel: Tel-Aviv

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel-Aviv Sourasky Medical Center


ncbi_country: South Africa: Mogosane; North-West Province

ncbi_organism_name: Escherichia coli O177

ncbi_submitter: North-West University


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_isolation_source: Systemic

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Paraburkholderia sp. MPAMCS5

ncbi_submitter: Dongguk university


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: CAU


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces sp. NPDC059704

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_organism_name: Rhodopirellula europaea

ncbi_submitter: EMG


ncbi_country: France: Brittany

ncbi_organism_name: Vibrio tasmaniensis

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0544

ncbi_submitter: Broad Institute


ncbi_isolation_source: oral cavity- mouth

ncbi_organism_name: Alloscardovia omnicolens F0580

ncbi_submitter: Washington University


ncbi_organism_name: Flaviramulus sp.


ncbi_organism_name: Francisella sp. 19X1-34

ncbi_submitter: Guangdong Provincial Hospital of Traditional Chinese Medicine


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: Ohio

ncbi_isolation_source: Bronchial Wash

ncbi_organism_name: Legionella clemsonensis

ncbi_submitter: Clemson University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Sri Lanka: Karawanalla

ncbi_isolation_source: blood

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Rajarata University of Sri lanka


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Kitasatospora] papulosa


ncbi_organism_name: Croceivirga sp.

ncbi_submitter: Freie Universitat Berlin


ncbi_isolate: wCauA

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: wCauA

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_organism_name: Shewanella algae

ncbi_submitter: University of Cadiz


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Exilispira sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tennessee


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Sediminibacterium sp.


ncbi_organism_name: Salmonella sp. SAL4435

ncbi_submitter: Zhejiang university


ncbi_organism_name: [Eubacterium] siraeum


ncbi_assembly_name: freshwater MAG --- KR4_bin-1024

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Denmark: Esbjerg E

ncbi_isolation_source: activated sludge from EsbE_18-Q3-R3-47

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R32(2017)

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Sandaracinaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: China: Heilongjiang

ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Guangdong Medical University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: India

ncbi_isolation_source: swine nasal swab

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_submitter: ICAR National Institute of Veterinary Epidemiology and Disease Informatics (NIVEDI)


ncbi_organism_name: Thermodesulfovibrio autotrophicus


ncbi_country: Japan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: North Sea

ncbi_isolation_source: coastal sea water column HE361-14 at a depth of 3m

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: France: Normandy

ncbi_organism_name: Vibrio aestuarianus subsp. cardii

ncbi_submitter: IFREMER


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Legionellales bacterium


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: Stool Culture

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Broad Institute


ncbi_country: China: Urumqi;Xinjiang

ncbi_isolation_source: Raw chicken from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_country: India: Shanthi Grama; Hassan District; Karnataka

ncbi_isolation_source: Retail pork

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Streptomyces sp. S1A(2023)

ncbi_submitter: Purdue University


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-0213

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_organism_name: Nostoc sp. SerVER01

ncbi_submitter: LANGEBIO


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Kyushu University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: sputum

ncbi_submitter: Institute for medical research


ncbi_country: Canada: Ontario

ncbi_organism_name: Neisseria meningitidis Nm6938

ncbi_submitter: University of Toronto


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-1918

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: SiChuan

ncbi_isolation_source: pig farm

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Mycoplasmatales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA:MA; Holliston

ncbi_isolation_source: soil

ncbi_organism_name: Sulfurospirillum diekertiae

ncbi_strain_identifiers: ACSTCE

ncbi_submitter: Institute of Applied Ecology (CAS)


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_isolate: APytT

ncbi_organism_name: Akkermansia glycaniphila

ncbi_strain_identifiers: APytT

ncbi_submitter: WAGENINGEN UNIVERSITY, LABORATORY OF SYSTEMS AND SYNTHETIC BIOLOGY.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Salmonella sp. NW317

ncbi_submitter: Sichuan University


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Tang lab


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AM23-1LB

ncbi_submitter: BGI


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Undivivens industriae

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Undivivens;s__Candidatus Undivivens industriae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Undivivens;s__Candidatus Undivivens industriae


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Netherlands

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Groningen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_assembly_name: IMG-taxon 2513237109 annotated assembly

ncbi_organism_name: Streptomyces sp. Ncost-T6T-1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG11066

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Intestinimonas sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Intestinimonas;x__environmental samples;s__uncultured Intestinimonas sp.


ncbi_country: Denmark

ncbi_organism_name: Bacteroides clarus

ncbi_submitter: Quadram Institutte


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Colombia: Cali

ncbi_isolation_source: commercial vaccine

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_strain_identifiers: SG 9R

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Acetobacter pasteurianus

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Thermodesulfovibrio sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AK

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_organism_name: Candidatus Arcticimaribacter sp.

ncbi_submitter: Yantai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Arcticimaribacter;x__unclassified Candidatus Arcticimaribacter;s__Candidatus Arcticimaribacter sp.


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of California at Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycoplasmoides gallisepticum

ncbi_submitter: Ningxia University


ncbi_country: Netherlands: Groesbeek

ncbi_isolation_source: wastewater treatment plant activated sludge

ncbi_organism_name: Candidatus Contendobacter sp.

ncbi_submitter: Radboud University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Contendibacter;x__unclassified Candidatus Contendobacter;s__Candidatus Contendobacter sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Norway

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Olav University Hospital


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pedococcus sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus sp. PS01304

ncbi_submitter: Penn State


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Anderseniibacteriota;x__unclassified Candidatus Anderseniibacteriota;s__Candidatus Andersenbacteria bacterium RIFCSPHIGHO2_02_FULL_46_16


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: Humitalea sp. 24SJ18S-53

ncbi_submitter: NNIBR


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_organism_name: Sellimonas sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: University of South Africa


ncbi_organism_name: Collinsella sp.

ncbi_submitter: UIUC


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Thiohalobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus sp. AZ116

ncbi_submitter: Broad Institute


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Natronospirales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Atlantic Ocean: Carter seamount

ncbi_organism_name: Bacillus sp. C28GYM-DRY-1

ncbi_submitter: Univeristy of Bristol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. C28GYM-DRY-1


ncbi_country: Germany

ncbi_isolation_source: Raw milk

ncbi_organism_name: Hafnia alvei

ncbi_submitter: University of Malaya


ncbi_organism_name: Sphingomonas aerolata

ncbi_submitter: University of Tuebingen


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Henan University


ncbi_organism_name: uncultured Coprobacillus sp.


ncbi_country: China

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_assembly_name: Rumen uncultured genome RUG12894

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_assembly_name: Rumen uncultured genome RUG10044

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14776

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Micromonospora sp. NPDC048835

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacillus subtilis


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Shewanella chilikensis

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Pseudomonas sp. NPDC078863


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Liege


ncbi_organism_name: Ralstonia sp. OTU4908

ncbi_submitter: The University of Chicago


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_assembly_name: freshwater MAG --- Umea2_bin-1223

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: IMG-taxon 2684623003 annotated assembly

ncbi_organism_name: Pseudomonas sp. OV546

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae VAKPC276

ncbi_submitter: JCVI


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Estonia

ncbi_isolation_source: wound biopsy

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hungary

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minnesota


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Australia: Surat Basin; Queensland

ncbi_isolation_source: Filtered formation waters collected from the Coxon Creek 10 (CX-10) coalbed methane well

ncbi_organism_name: Syntrophaceae bacterium UBA7520

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: Anaerosalibacter massiliensis

ncbi_submitter: EMG


ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_isolation_source: acidic soil

ncbi_organism_name: Luteimonas wenzhouensis

ncbi_submitter: Nanjing Tech Unviersity


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Zurich


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_country: Singapore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: China: Mudanjiang

ncbi_isolation_source: rhizosphere of the plant

ncbi_organism_name: Streptacidiphilus fuscans

ncbi_submitter: School of life science


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Enterocloster clostridioformis


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Finland

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: freshwater MAG --- YR4_bin-0660

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS


ncbi_country: Kenya: Kisumu

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Portugal: Porto

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: France

ncbi_organism_name: Xanthomonas dyei

ncbi_submitter: University of Chicago


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Anaerolineaceae bacterium UBA5440

ncbi_submitter: University of Queensland


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium sp. UM_NZ2

ncbi_submitter: Universiti Malaya


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Poland: North-East

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Medical University of Bialystok


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Virginia; Blacksburg

ncbi_isolation_source: gut

ncbi_organism_name: Bombilactobacillus mellis

ncbi_submitter: Virginia Tech


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01356

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01356


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Anaeroplasma sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient6 sputum

ncbi_submitter: Shenzhen People Hospital


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_strain_identifiers: TKF 2

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agama


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_country: China: Dashan Tin-Zinc Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp2 AA91

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp2 AA91

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Bacillus haynesii


ncbi_organism_name: uncultured Alkaliflexus sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Aeoliella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: metagenome

ncbi_organism_name: Eubacteriaceae bacterium CHKCI004

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_submitter: Lund University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Lachnobacterium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Microbacterium imperiale

ncbi_submitter: BioPS Co., Ltd.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Faecalibaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Paraclostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Glaciecola sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Taiwan

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: Academia Sinica


ncbi_country: China: Beijing

ncbi_isolation_source: Daqu

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Science and Technology Beijing

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-0333

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China

ncbi_isolation_source: fresh feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: South Korea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Thalassolituus marinus

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources, P.R.China


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Anaerococcus octavius

ncbi_submitter: Loyola University Chicago


ncbi_country: Thailand: Trang

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Streptomyces flavochromogenes

ncbi_strain_identifiers: NRRL B-2684

ncbi_submitter: University of Illinois


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_submitter: Seoul National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Aeromonadales;f__Aeromonadaceae;g__Aeromonas;s__Aeromonas salmonicida;sb__Aeromonas salmonicida subsp. achromogenes;x__Aeromonas salmonicida subsp. achromogenes AS03


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Psychrobacter piscatorii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Inha University


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: TAILORED-Treatment project


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: China: Zhongshan

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 14ESS1566

ncbi_submitter: South China Agricultural University


ncbi_country: Denmark: Hellerup

ncbi_isolation_source: seawater

ncbi_organism_name: Paraglaciecola chathamensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Laboratory of Infectious Diseases, Kitasato Institute for Life Sciences, Kitasato University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Guangxi University


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: United Kingdom: England

ncbi_isolation_source: Paw

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Metapseudomonas boanensis

ncbi_submitter: Xihua University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 60 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AK

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_organism_name: Bacillus solimangrovi

ncbi_submitter: Korea Research Institute Bioscience and Biotechnology


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas sp. FP833

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: USA: Sleepy Eye; Minnesota

ncbi_isolation_source: pond water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: South Korea: Yeongam-gun

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Seoul National University


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: respiratory tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Micromonospora echinaurantiaca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Central Florida


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Fidelibacterota bacterium UBA2216

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA2216


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-04997

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Thailand: Chaiyaphum

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Salmonella sp. NW422

ncbi_submitter: Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany: Cologne

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus sp. Soil522

ncbi_submitter: ETH Zurich


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Bloodstream

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Cytobacillus gottheilii

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_country: USA: Madison; WI

ncbi_isolation_source: sludge collected from the acid-phase digester of a two-phase anaerobic digestion process at the Madison Metropolitan Sewerage Disctrict Nine Springs Facility

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Leptolyngbya sp. FACHB-1624

ncbi_submitter: South China Normal University


ncbi_organism_name: Borreliella garinii

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pasteurella multocida subsp. septica

ncbi_submitter: Hopital Bicetre


ncbi_submitter: Sao Paulo State University-FCAVUnesp

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_organism_name: Paenibacillus glucanolyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paenibacillus sp. FSL H3-0286

ncbi_submitter: Penn State


ncbi_organism_name: Salmonella sp. CQ23WZ0291SAL

ncbi_submitter: Wanzhou CDC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea:Seoul

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Braganca

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: Japan: Osaka

ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Walailak University


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_organism_name: Blautia wexlerae


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Finland: Helsinki

ncbi_isolation_source: Broiler leg meat

ncbi_organism_name: Leuconostoc gelidum subsp. aenigmaticum

ncbi_submitter: University of Helsinki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;x__Leuconostoc gelidum group;s__Leuconostoc gelidum;sb__Leuconostoc gelidum subsp. aenigmaticum


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: Indian Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudoalteromonas piscicida

ncbi_submitter: Technical University of Denmark


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_submitter: University of Trento


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Guangxi University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_organism_name: Pseudoalteromonas shioyasakiensis

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: Poland

ncbi_isolation_source: pellet

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: USA:Virginia; Shenandoah Valley

ncbi_isolation_source: Shenandoah Valley

ncbi_organism_name: Clostridium septicum

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Gottfriedia sp. NPDC056225

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Atlantic Ocean

ncbi_isolation_source: skin

ncbi_organism_name: Pseudoalteromonas sp. APC 3894

ncbi_submitter: University College Cork


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Saccharicrinis sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Center for Microbial Communities


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: CRC RESIST


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Cystic fibrosis patient

ncbi_organism_name: Pandoraea morbifera

ncbi_submitter: LM-UGent


ncbi_submitter: University of Southampton


ncbi_country: India

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: ICA - AGROSAVIA


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Poultry

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Chile

ncbi_isolation_source: Penguin

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Dysgonomonas sp.


ncbi_country: China: Guangdong

ncbi_isolation_source: banana with sheath rot

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhongkai University of Agriculture and Engineering


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mucispirillum sp.


ncbi_organism_name: Thermosulfidibacteraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Facklamia sp.


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Egypt

ncbi_isolation_source: urine

ncbi_submitter: JCVI


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Bartonella sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 83 (4-2051087)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 83 (4-2051087)


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: Maryland

ncbi_isolation_source: peri-anal swab

ncbi_organism_name: Escherichia coli 4541-1

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Floridaenema fluviatile BLCC-F154

ncbi_submitter: University of Florida


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P4RS

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P4RS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_country: Germany

ncbi_isolation_source: Wound swab

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: South Korea: Seoul

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Belgium

ncbi_isolation_source: lambic beer

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: university of Ghent


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Salmonella sp. SAL04278

ncbi_submitter: Zhejiang university


ncbi_organism_name: Tunturiibacter empetritectus

ncbi_submitter: Rutgers University


ncbi_organism_name: Taishania sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Flagellimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: The University of Texas at San Antonio


ncbi_organism_name: Bradyrhizobium betae

ncbi_submitter: The University of Sydney


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Purdue University


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Streptomyces sp. NPDC127178

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bifidobacterium aquikefiri

ncbi_submitter: Teagasc


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: ZC4 (Zoo Composter number 4) at the Sao Paulo Zoo

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Instituto de Quimica


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Salmonella sp. C3276

ncbi_submitter: Sichuan University


ncbi_organism_name: Chelatococcus sp. GCM10030263

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: soil

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: KAIST


ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_submitter: University of Zurich


ncbi_country: USA: Spirit Lake; Washington

ncbi_isolation_source: Spirit Lake

ncbi_organism_name: Legionella spiritensis

ncbi_submitter: Tel Aviv University


ncbi_organism_name: Catenibacterium mitsuokai DSM 15897


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 956

ncbi_submitter: USDA-ARS


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: ICONIC


ncbi_assembly_name: IMG-taxon 2667527411 annotated assembly

ncbi_organism_name: Sedimentitalea nanhaiensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Limosilactobacillus allomucosae

ncbi_strain_identifiers: WILCCON 0055

ncbi_submitter: Wilmar International Limited


ncbi_country: Pacific Ocean

ncbi_isolation_source: gorgonian

ncbi_organism_name: Pseudoalteromonas distincta KMM 3548

ncbi_submitter: Shandong University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;x__unclassified Acidimicrobiia;s__Acidimicrobiia bacterium BACL6 MAG-120910-bin40


ncbi_organism_name: Bacillus sp. R45

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. R45


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Candidatus Actinomarinales bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__unclassified Candidatus Actinomarinales;s__Candidatus Actinomarinales bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0564

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KP10042 ntrds-2

ncbi_submitter: First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sanguinis SK678

ncbi_submitter: Baylor College of Medicine


ncbi_country: China: Malan

ncbi_organism_name: Janibacter melonis

ncbi_submitter: BGI-Qingdao


ncbi_organism_name: Cellulomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Empedobacter sp.


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Finland: Espoo

ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Japan

ncbi_isolation_source: liver

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Algiphilus sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: France

ncbi_organism_name: Saccharibacillus endophyticus

ncbi_submitter: University Reims Champagne Ardennes UMR FARE


ncbi_assembly_name: Rumen uncultured genome RUG12765

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Clostridium sulfidigenes


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus constellatus;sb__Streptococcus constellatus subsp. constellatus;x__Streptococcus constellatus subsp. constellatus SK53


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: United Kingdom: Cardiff

ncbi_isolation_source: curette

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;x__unclassified Peptostreptococcaceae;s__Peptostreptococcaceae bacterium oral taxon 929


ncbi_organism_name: Escherichia coli O104:H4 str. 11-4623

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. 11-4623


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster