ncbi_organism_name: Ruthenibacterium lactatiformans


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Chromosome

ncbi_country: Thailand: Narathiwas

ncbi_genome_representation: full

ncbi_isolation_source: food

ncbi_organism_name: Citrobacter sp. MGH 55

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Hansschlegelia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: PA

ncbi_isolation_source: porcine pig intestine small

ncbi_organism_name: Escherichia sp. MOD1-EC6300

ncbi_submitter: FDA/CFSAN


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Massey University


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_level: Complete Genome

ncbi_country: India: Kochi; Kerala

ncbi_isolation_source: marine or sediment

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


gtdb_representative: t

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: Salmonella sp. NW864

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: shandong university


ncbi_organism_name: Phormidesmis sp.

ncbi_submitter: EPFL


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudoscardovia suis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Methylorubrum thiocyanatum

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: Nt delta copZA/v

ncbi_organism_name: Haemophilus influenzae

ncbi_strain_identifiers: Nt delta copZA;v;Nt delta copZA/v

ncbi_submitter: Mississippi State University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp2 AA96

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp2 AA96

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: Fermentation bed material

ncbi_organism_name: Runella sp. MFBS21

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Spirosomataceae;g__Runella;x__unclassified Runella;s__Runella sp. MFBS21


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: Japan:Shizuoka; Higashi-izu; Arayu

ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: RIKEN-BRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhongshan School of Medicine, Sun Yat-sen University


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Mediterraneibacter sp. ICN-202921

ncbi_submitter: Seoul National University


ncbi_country: USA

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Brazil: Bhaia

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIFESP


ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: Canada: Eel Lake; Yarmouth County; Nova Scotia

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Paracoccus salipaludis


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: MPF 2

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Bradyrhizobium sp. AZCC 1693

ncbi_strain_identifiers: AZCC 1693

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Mariniphaga sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium tibiigranuli


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cpo221

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Human feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: The University of Tokyo


ncbi_country: Croatia: Gulf of Piran; Adriatic Sea

ncbi_isolation_source: sea water

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Haifa


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Verrucomicrobia bacterium TMED71

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium TMED71


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Queensland


ncbi_country: USA:Wyoming; Yellowstone National Park; Stumped Spring OF2 hot spring

ncbi_isolation_source: alkaline hot spring microbial mat

ncbi_organism_name: Thermoflexus sp.

ncbi_submitter: University of Minnesota


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Georgia

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Oklahoma State University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_assembly_name: freshwater MAG --- AM4_bin-387

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wildermuthiibacteriota;s__Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_02_FULL_45_25


ncbi_organism_name: Oscillospiraceae bacterium PP1C4

ncbi_submitter: UMR CNRS 6023


ncbi_country: China: Nanning

ncbi_isolation_source: duck

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Priestia sp. YIM B13448

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;x__unclassified Priestia;s__Priestia sp. YIM B13448


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


gtdb_type_species_of_genus: t

ncbi_country: Germany

ncbi_isolation_source: anaerobic sewer sludge

ncbi_organism_name: Alicycliphilus denitrificans K601

ncbi_refseq_category: reference genome

ncbi_submitter: US DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Mauritius


ncbi_organism_name: Bacillus sp. FSL W7-1092

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL W7-1092


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Neimenggu

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: kidney

ncbi_organism_name: Leptospira santarosai

ncbi_submitter: School of Veterinary Medicine and Animal Science / University of Sao Paulo


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: manure

ncbi_submitter: USDA


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Italy: Muggia (TS)

ncbi_isolation_source: intestine content

ncbi_organism_name: Clostridium botulinum C/D

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Cohnella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_country: Antarctica

ncbi_isolation_source: sea water

ncbi_organism_name: Psychrobacter sp. SWN149

ncbi_submitter: Shandong University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC056337

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Antarctica: James Ross Island

ncbi_isolation_source: beak

ncbi_organism_name: Corynebacterium mendelii

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Peru: Puno

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: Candidatus Spyradenecus sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Lentisphaerales;f__Lentisphaeraceae;x__Lentisphaeraceae incertae sedis;g__Candidatus Spyradenecus;x__unclassified Candidatus Spyradenecus;s__Candidatus Spyradenecus sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Leucobacter luti

ncbi_strain_identifiers: SCAU 3

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacillus cereus group sp. BC243

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC243


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Monash University


ncbi_isolate: AOP31_B2_surf _bin _10

ncbi_organism_name: Micrococcaceae bacterium

ncbi_strain_identifiers: AOP31_B2_surf _bin _10

ncbi_submitter: Genoscope


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-120

ncbi_submitter: Broad Institute


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangzhou

ncbi_isolation_source: physical

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Fudan University


ncbi_assembly_name: freshwater MAG --- Day6-3_bin-180

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Poland

ncbi_isolation_source: wound

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF02-29

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Calgary


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_country: Saudi Arabia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: JXL

ncbi_submitter: Enze Hospital


ncbi_organism_name: Clostridium algifaecis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Alberta


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: GuangXi

ncbi_organism_name: Burkholderia glumae

ncbi_strain_identifiers: GX

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Turkey: Kayseri

ncbi_isolation_source: Droppings

ncbi_organism_name: Campylobacter anatolicus

ncbi_submitter: Erciyes Univ. Faculty of Veterinary Medicine


ncbi_organism_name: Streptomyces murinus

ncbi_submitter: Technical University of Denmark


ncbi_country: Ecuador: Guayaquil

ncbi_isolation_source: sputum

ncbi_submitter: University of Guayaquil


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Tatlockia sp.


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Friedrich-Loeffler-Institut, Institute of Molecular Pathogenesis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Rhodococcus sp. NPDC127527

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NPDC127527


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Sulfuricaulis sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Center for Microbial Communities


ncbi_country: Argentina: Tandil

ncbi_isolation_source: silage

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CECT 7121

ncbi_submitter: CERELA-CONICET


ncbi_organism_name: Candidatus Zeuxoniibacter abyssi

ncbi_submitter: The University of New South Wales

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Tethybacterales;f__Candidatus Persebacteraceae;g__Candidatus Zeuxoniibacter;s__Candidatus Zeuxoniibacter abyssi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Tethybacterales;f__Candidatus Persebacteraceae;g__Candidatus Zeuxoniibacter;s__Candidatus Zeuxoniibacter abyssi


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: China: Shenzhen

ncbi_organism_name: Coprobacillus sp. AF17-11AC

ncbi_submitter: BGI


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Crenothrix polyspora

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EBI


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Auburn University


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: EMG


ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Aeromonas sobria

ncbi_submitter: Northumbria University


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Kosmotogaceae bacterium UBA6818

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces sp. NPDC056460

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shenyang Agricultural University


ncbi_country: Serbia: Pirot

ncbi_isolation_source: artisanal sour milk

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of molecular genetics and genetic engineering University of Belgrade


ncbi_organism_name: Pikeienuella sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_organism_name: Paraprevotella xylaniphila


ncbi_isolation_source: unknown

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 232

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_strain_identifiers: CIM:MAG 232

ncbi_submitter: Mayo Clinic


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Poriferisodalis sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Candidatus Poriferisodalaceae;g__Candidatus Poriferisodalis;x__unclassified Candidatus Poriferisodalis;s__Candidatus Poriferisodalis sp.


ncbi_organism_name: Rhizobiaceae bacterium


ncbi_organism_name: Microcystis panniformis

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptomyces tendae


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolate: AOP42_C1_surf _bin _17

ncbi_organism_name: Sphingobacterium sp.

ncbi_strain_identifiers: AOP42_C1_surf _bin _17

ncbi_submitter: Genoscope


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: bacterium J10(2018)

ncbi_submitter: Chinese Academy of Science


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: Harvard University


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_isolation_source: human skin

ncbi_organism_name: Peptoniphilus duerdenii

ncbi_submitter: NIH/NHGRI


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Poland

ncbi_submitter: Biobank Lab, Department of Molecular Biophysics, Faculty of Biology and Environmental Protection, Univeristy of Lodz, Poland


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: US Food and Drug Administration


ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: EMG


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Paracoccus sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. 1_MG-2023


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0198

ncbi_submitter: Broad Institute


ncbi_organism_name: Methylophaga marina

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Denmark: Little Belt

ncbi_isolation_source: marine sediment

ncbi_organism_name: Labilibaculum filiforme

ncbi_submitter: Aarhus University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Mariner hydrothermal plume 25m

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: USFDA


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: USA: GA

ncbi_isolation_source: environment

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Morganella morganii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Gallionella sp.


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces viridochromogenes

ncbi_strain_identifiers: NRRL 3414

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Poland: Krakow

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-2180

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine environment

ncbi_organism_name: Synechococcus sp. A15-24

ncbi_submitter: Station Biologique de Roscoff (CNRS - Sorbonne University)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacterium ramulus


ncbi_submitter: UMR 1137 IAME


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Sulfuricurvum sp.


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enterobacteriaceae bacterium UBA7896

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Chile: Santiago

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Bacillus sp. FSL K6-0993

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-0993


ncbi_country: China:GanSU;Wuwei; Loess Plateau

ncbi_isolation_source: Atrophic gastritis

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Lanzhou University Second Hospital


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Concord


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Paenochrobactrum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus sp. 1171_SSPC

ncbi_submitter: University of Washington


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Spain: Alfacada pond; Ebro delta; Tarragona

ncbi_isolation_source: epidermal mucus of Anguilla anguilla fishes in Ebro delta

ncbi_organism_name: Sphingobium yanoikuyae


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Borkfalkia stercoripullorum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Glutamicibacter sp. NPDC088455

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Daniel Boone National Forest; KY

ncbi_isolate: MAG 22

ncbi_isolation_source: acid mine drainage site biofilm from limestone lined outflow channel community

ncbi_organism_name: Burkholderiales bacterium

ncbi_strain_identifiers: MAG 22

ncbi_submitter: University of California Davis


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium ferriphilum


ncbi_country: China:Inner Mongolia

ncbi_isolation_source: Carbon source limited medium

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: blood

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Japan

ncbi_submitter: Toho university


ncbi_country: South Korea

ncbi_isolation_source: dried fermented soybeans (Meju)

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CHUNG ANG UNIVERSITY


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Yangjiang

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: EMG


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Dehalococcoidia bacterium UBA2162

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: Addenbrooke s hospital

ncbi_isolation_source: UC fecal sample

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: San Diego State University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Nioella sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Brazil: Belem; Bolonha Lake

ncbi_isolate: CACIAM 22H1

ncbi_isolation_source: CACIAM 22 non-axenic culture of unicellular cyanobacterium started from water sample from Bolonha Lake

ncbi_organism_name: Flavihumibacter sp. CACIAM 22H1

ncbi_strain_identifiers: CACIAM 22H1

ncbi_submitter: Universidade Federal do Para

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter;x__unclassified Flavihumibacter;s__Flavihumibacter sp. CACIAM 22H1


ncbi_country: Norway

ncbi_isolation_source: environmental

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_country: USA: Florida Keys; FL

ncbi_isolation_source: coral samples

ncbi_organism_name: Pseudoalteromonas luteoviolacea 2ta16

ncbi_submitter: University of California, San Diego


ncbi_isolation_source: cucumber rhizosphere

ncbi_organism_name: Pantoea eucrina

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_country: China: Shandong; Zhucheng

ncbi_isolation_source: soil

ncbi_submitter: Shandong university


ncbi_organism_name: uncultured Bariatricus sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: China CDC


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Paramuribaculum sp.


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Tokyo Institute of Technology


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: stool samples

ncbi_organism_name: Clostridium neonatale

ncbi_submitter: University of Paris


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Hymenobacter monticola

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: garden soil

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: California State University San Bernardino


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1070

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Public Health Ontario


ncbi_country: USA

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CDC


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_submitter: University of Trento


ncbi_country: Belgium: Ghent

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Wageningen UR


ncbi_country: India: Vellore

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: Pacific Ocean: Hole 1301A; eastern flank of the Juan de Fuca Ridge

ncbi_isolation_source: subseafloor olivine biofilm

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: California

ncbi_isolation_source: wine

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Wisconsin-Madison and Utah State University


ncbi_organism_name: Malacoplasma sp.


ncbi_country: France

ncbi_isolation_source: lactic starter

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: CIRM-BIA 851

ncbi_submitter: Brigham Young University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Corynebacterium stationis

ncbi_submitter: University of Queensland


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Actinomycetaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Serpens gallinarum

ncbi_submitter: Quadram Institutte


ncbi_country: Russia

ncbi_organism_name: Yersinia pestis

ncbi_submitter: RARI


ncbi_country: Papua New Guinea

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Shandong University


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Dahi fermented milk product

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Quaid-I-Azam University


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_isolation_source: Human feces

ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: The University of Tokyo


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Ligilactobacillus acidipiscis KCTC 13900

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Switzerland

ncbi_submitter: University of Lausanne


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of Galway


ncbi_country: Belgium: Halen

ncbi_organism_name: Hydrogenophaga sp. PBL-H3

ncbi_submitter: Leibniz Institute of Baltic Sea Research


ncbi_organism_name: [Clostridium] nexile

ncbi_submitter: EMG


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD16764

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: Tennessee

ncbi_isolation_source: well

ncbi_organism_name: Rhodanobacter thiooxydans

ncbi_submitter: University of Oklahoma


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Dysgonomonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: National Research Council Canada


ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Tennessee Veterinary College


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Microbacterium algeriense

ncbi_submitter: BGI-Shenzhen


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 0-3 cm

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Norway

ncbi_isolation_source: meat processing facility

ncbi_organism_name: Pseudomonas sp. MF4836

ncbi_submitter: Nofima


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Chittagong


ncbi_submitter: Zhejiang university


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Anomoia purmunda


ncbi_isolation_source: intestinal contents

ncbi_organism_name: Arthrobacter gengyunqii

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_assembly_name: Rumen uncultured genome RUG13135

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: GS De Novo Assembly

ncbi_country: India: MS

ncbi_isolation_source: vegetable market soil

ncbi_organism_name: Acinetobacter baumannii EGD-HP18

ncbi_submitter: National Environmental Engineering Research Institute-CSIR


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Shanghai Ocean University


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Ureaplasma sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolate: SPRUCE 131

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_strain_identifiers: SPRUCE 131

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Leptospiraceae bacterium


ncbi_organism_name: Candidatus Arcticimaribacter sp.

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Arcticimaribacter;x__unclassified Candidatus Arcticimaribacter;s__Candidatus Arcticimaribacter sp.


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_isolate: SPRUCE 10

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 10


ncbi_organism_name: Haemophilus sp. HN_Hi13

ncbi_submitter: Hunan Children's hospital


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-980

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacillales bacterium UBA1083

ncbi_submitter: University of Queensland


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Switzerland: Lake of Neuchatel

ncbi_isolation_source: European perch intestine

ncbi_organism_name: Pseudomonas chlororaphis subsp. piscium

ncbi_submitter: JLU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. piscium


ncbi_country: Sri Lanka

ncbi_isolation_source: vaginal swab pre-delivery

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: skin and soft tissue infection

ncbi_submitter: Northern Antibiotic Resistance Partnership

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 06BA18369


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Brown University


ncbi_isolation_source: Isolated from commercial product

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chr. Hansen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG162

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Colombia

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: Czech Republic: Pilsen

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Charles University in Prague


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Klebsiella sp. 101298

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Desulforamulus ruminis

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Cadiz


ncbi_country: Puerto Rico

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Northern Arizona University


ncbi_country: Greece

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Hellenic Agricultural Organization Demeter


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium disporicum

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: metagenome

ncbi_organism_name: Eubacteriaceae bacterium CHKCI004

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Poseidonibacter sp.

ncbi_submitter: Lomonosov Moscow State University, Faculty of Biology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: subsurface aquifer sediment

ncbi_organism_name: Parcubacteria bacterium RAAC4_OD1_1

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Parcubacteria;s__Parcubacteria bacterium RAAC4_OD1_1


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Radboud University


ncbi_country: Ghana

ncbi_isolation_source: river water

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Tokyo Medical and Dental University


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_submitter: Ausgem


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Algeria: Ouargla

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universiteit Gent


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Peru

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanghai

ncbi_organism_name: Listeria monocytogenes SHL001

ncbi_submitter: University of Maryland, College Park


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Italy

ncbi_isolation_source: salami paste production

ncbi_submitter: FDA


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Planctomycetaceae bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0398

ncbi_submitter: Broad Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: China: Sichuan Province

ncbi_isolation_source: Large-scale pig farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Bacillus sp. PS194

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. PS194


ncbi_country: Russia: Krasnodar region

ncbi_isolation_source: Rizosphere soil sample

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Agrofirma Urozhaynaya LLC


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium cheniae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Silage Feed

ncbi_organism_name: Listeria monocytogenes


ncbi_country: Switzerland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_submitter: FDA/CFSAN


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: zooplankton

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Utah


ncbi_country: Russia: Borehole near Beyelii Yar in Tomsk

ncbi_isolation_source: groundwater filtered on 0.22 m filters

ncbi_organism_name: Aneurinibacillus sp.

ncbi_submitter: University Duisburg-Essen


ncbi_genome_category: derived from single cell

ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_submitter: Shanghai Customs


ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: uncultured Syntrophomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Indian Ocean: Red Sea

ncbi_isolation_source: (DCM) deep chlorophyll maximum layer

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Edinburgh


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Yersinia frederiksenii

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Umea2_bin-1406

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia sp. DFI.4.84

ncbi_submitter: University of Chicago


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Candidatus Aerophobota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aerophobota;s__Candidatus Aerophobota bacterium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Germany

ncbi_isolation_source: anaerobic sediment of brackish water ditch near Jadebusen; North Sea; Germany

ncbi_organism_name: Desulfobacter postgatei 2ac9

ncbi_submitter: JGI


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_isolation_source: California sea lion

ncbi_organism_name: Campylobacter insulaenigrae

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Firmicutes bacterium AM55-24TS

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AM55-24TS


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Planktomarina sp.

ncbi_submitter: University of Oldenburg


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: South Korea

ncbi_isolation_source: nuts

ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: FDA/CFSAN


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Region Zealand


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Gongolgon; New South Wales

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: Australian Government’s Cooperative Research Centres Program


ncbi_isolation_source: salt water estuary

ncbi_organism_name: Pseudoalteromonas sp. MMG022

ncbi_submitter: San Diego State University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus FVRH6026

ncbi_submitter: Broad Institute


ncbi_country: Netherlands

ncbi_isolation_source: Trachea

ncbi_organism_name: Rodentibacter ratti

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium CG_4_9_14_0_8_um_filter_41_16


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 0648

ncbi_submitter: The University of Queensland


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: McMaster University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Rhizomicrobium sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: mouse gut metagenome


ncbi_country: United Kingdom: Birmingham

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: University of Birmingham


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: stool

ncbi_organism_name: Prevotella merdae

ncbi_submitter: URMITE


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 23046;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Ktedonobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum of child cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Canada

ncbi_isolation_source: canola rhizosphere

ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Natural Sciences and Engineering Research Council of Canada (NSERC)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces


ncbi_country: France: Nantes

ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Streptomyces stramineus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases (PRCCID)


ncbi_country: Mexico

ncbi_isolation_source: cultivation media

ncbi_strain_identifiers: BCG delta BCG1419c mutant

ncbi_submitter: National Center of Infectious and Parasitic Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: Atlantic Ocean

ncbi_organism_name: Streptomyces bathyalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Rumen uncultured genome RUG10930

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Infernicultor aquiphilus

ncbi_taxonomy: d__Bacteria;p__Atribacterota;c__Candidatus Phoenicimicrobiia;o__Candidatus Pheonicimicrobiales;f__Candidatus Phoenicimicrobiaceae;g__Candidatus Infernicultor;s__Candidatus Infernicultor aquiphilus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;c__Candidatus Phoenicimicrobiia;o__Candidatus Pheonicimicrobiales;f__Candidatus Phoenicimicrobiaceae;g__Candidatus Infernicultor;s__Candidatus Infernicultor aquiphilus


ncbi_organism_name: Myxococcales bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Novome Biotechnologies


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Life Science


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mucilaginibacter sabulilitoris

ncbi_submitter: University of California, Los Angeles


ncbi_strain_identifiers: Mpkobe

ncbi_submitter: The Open University of Japan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Candidatus Ishikawella;s__Candidatus Ishikawella capsulata;x__Candidatus Ishikawaella capsulata Mpkobe


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: India: Gujarat

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Municipal Center for Disease Control & Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1373

ncbi_submitter: Broad Institute


ncbi_country: China: Ningxia hui autonomous region

ncbi_isolation_source: sand

ncbi_organism_name: Goekera deserti

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_country: South Korea:Jeju

ncbi_isolation_source: marine sediment

ncbi_organism_name: Formosa sediminum

ncbi_submitter: Jeju National University


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pseudolysinimonas sp.

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: pork

ncbi_submitter: Yangzhou University


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Hickory Corners; MI

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. ATCC 43928

ncbi_submitter: Indiana University


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Arctic Ocean: Canada Basin

ncbi_isolation_source: ocean water

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Australia: Coast of Sydney

ncbi_isolation_source: sea water

ncbi_organism_name: Aquimarina sp. AD10

ncbi_submitter: University of New South Wales


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: coral

ncbi_organism_name: Labrenzia sp. R5_0

ncbi_submitter: University of Konstanz


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Yangzhou

ncbi_isolation_source: sputum

ncbi_submitter: the Affiliated Hospital of Yangzhou University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Murray Bridge; SA

ncbi_isolation_source: Pasture

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: US Department of Agriculture


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: [Clostridium] clostridioforme CAG:132


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: China: Tibet; Lhasa

ncbi_organism_name: Bacillus sp. YBWC18

ncbi_submitter: Rainer Borriss's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YBWC18


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces monomycini

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: India: Chandigarh

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Corynebacterium glutamicum ZL-6

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences


ncbi_country: Australia: Thorneside Wastewater Treatment Plant

ncbi_isolation_source: flocular biomat

ncbi_organism_name: Ignavibacteria bacterium UBA2403

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium UBA2403


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2733950

ncbi_submitter: IGS


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Rumen uncultured genome RUG10254

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Psychrobacter proteolyticus

ncbi_strain_identifiers: HAMBI 2948

ncbi_submitter: University of Helsinki


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sobrinus TCI-172

ncbi_submitter: JCVI


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Research Institute for Systems Biology and Medicine


ncbi_country: Israel: Tel Aviv

ncbi_isolation_source: rectal

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Paenibacillus amylolyticus

ncbi_submitter: Oregon State University - Cascades


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: DS-I Africa


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_strain_identifiers: 45f fall

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Pseudonocardia xinjiangensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Ralstonia pseudosolanacearum


ncbi_submitter: Institut Pasteur


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_9 depth 9-12 cm

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shinshu university hospital


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University