ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Malaysia

ncbi_genome_representation: full

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_country: South Korea: Cheongju-si

ncbi_submitter: Korea Disease Control and Prevention Agency


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Stenotrophomonas rhizophila


gtdb_representative: t

ncbi_country: China

ncbi_isolation_source: desert regolith

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_assembly_level: Complete Genome

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Tunisia

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus group sp. N3

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. N3


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_organism_name: Dehalococcoidia bacterium CG2_30_46_19

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Maryland

ncbi_isolation_source: Feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: UC Davis


ncbi_country: China: Shanghai

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Chinese Academy of Agricultural Science


ncbi_organism_name: Mesorhizobium sp. M0751

ncbi_submitter: Washington State University


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: feces; 4 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: bioBiome, Inc.


ncbi_country: Pakistan: Balochistan

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Argentina

ncbi_isolation_source: Bovine

ncbi_submitter: Utrecht University and USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter fetus;sb__Campylobacter fetus subsp. venerealis;x__Campylobacter fetus subsp. venerealis 97/608


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Marinosulfonomonas sp.

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: viscera

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: PA01 derived lab mutant

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Manitoba


ncbi_organism_name: Cardiobacterium hominis


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_assembly_name: freshwater MAG --- Loc090402-4m_bin-0029

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: Xiamen University


ncbi_country: USA: VA

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_44_21


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ecuador: Quito

ncbi_isolation_source: human stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_country: USA: NY

ncbi_isolation_source: sputum

ncbi_organism_name: Neisseria dumasiana

ncbi_submitter: Wadsworth Center / NYSDOH

ncbi_type_material_designation: assembly from type material


ncbi_country: Belgium: Halen

ncbi_organism_name: Hydrogenophaga sp. PBL-H3

ncbi_submitter: Leibniz Institute of Baltic Sea Research


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Rumen uncultured genome RUG11723

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Mogibacterium diversum

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: barn dust sample

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Salmonella sp. NW1052

ncbi_submitter: Sichuan University


ncbi_strain_identifiers: 99607;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: Ireland

ncbi_organism_name: Coprococcus comes

ncbi_submitter: University College Cork


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: raw meat-based diets for companion animals

ncbi_submitter: University of Zurich


ncbi_submitter: University of California at Davis


gtdb_type_species_of_genus: t

ncbi_organism_name: Lancefieldella parvula DSM 20469

ncbi_refseq_category: reference genome

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: China

ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_submitter: Hainan University


ncbi_organism_name: Acidovorax facilis

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.


ncbi_country: USA: IA

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Altererythrobacter sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Streptomyces sp. NPDC018693

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: uncultured Ferrithrix sp.


ncbi_organism_name: uncultured Rhodobacterales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Klebsiella electrica

ncbi_submitter: University of Wyoming


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Streptomyces sp. NPDC007940


ncbi_organism_name: Streptomyces virginiae


ncbi_organism_name: Streptomyces gardneri


ncbi_organism_name: uncultured Azospirillaceae bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: cold seep

ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Blautia obeum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_submitter: University of Tehran


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiae bacterium RIFCSPLOWO2_01_FULL_28_7


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Burkholderiales bacterium C2

ncbi_submitter: University of Trento


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Handley Lab, University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprococcus sp.


ncbi_country: New Zealand

ncbi_isolation_source: cloacal swab

ncbi_submitter: Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mississippi


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Stanford Healthcare


ncbi_organism_name: Streptococcus pyogenes serotype M18

ncbi_submitter: IZLSLER


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Chlorobiota bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__environmental samples;s__uncultured Chlorobiota bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Ngtc RS 13

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Israel: Beer-Sheva

ncbi_isolation_source: Oropharyngeal Swab

ncbi_organism_name: Kingella negevensis

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Senegal

ncbi_organism_name: Ehrlichia ruminantium

ncbi_submitter: CIRAD


ncbi_isolation_source: marine metagenome


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1051830

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Competibacteraceae bacterium UBA3908

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Competibacteraceae bacterium UBA3908


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Ningbo Women and Children's Hospital


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: bronchial

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: Belgium

ncbi_submitter: Universiteit Gent


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Waterline

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: University of Basel


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Deinococcus piscis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Turkey: Hatay

ncbi_isolation_source: Orchard

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Walailak University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_isolation_source: human feces

ncbi_organism_name: Candidatus Avelusimicrobium facis

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: Greece

ncbi_isolation_source: biological sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, University of Thessaly


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: GA

ncbi_isolation_source: stream

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_country: Australia: Monaro; NSW

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroides congonensis


ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01990

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Anhui Agricultural University


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Dialister succinatiphilus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Colombia: Putumayo

ncbi_isolation_source: nasal swab

ncbi_submitter: South American MRSA Consortium


ncbi_isolation_source: Cheese

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11550

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Roseburia sp.


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Idiomarina sp.

ncbi_submitter: Fudan University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Pontibacter sp. KCTC 32443

ncbi_submitter: Seoul Women's University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter;x__unclassified Pontibacter;s__Pontibacter sp. KCTC 32443


ncbi_country: China: Shenzhen

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the sixth affiliated hospital of Shenzhen University Health Science Center


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU1 evolved under selective conditions; LB evolved gen 500 Population GS

ncbi_strain_identifiers: RU1 LB8

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_country: Brazil:Santa Catarina; Blumenau

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Coprococcus catus

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Japan

ncbi_isolation_source: beer

ncbi_organism_name: Secundilactobacillus paracollinoides

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: sepsis

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: China

ncbi_isolation_source: laboratory

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Science College, Shantou University


ncbi_country: Democratic Republic of the Congo: Lwiro

ncbi_isolate: wAnD

ncbi_organism_name: Wolbachia endosymbiont of Anopheles demeilloni

ncbi_strain_identifiers: wAnD

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Acidiphilium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_submitter: Mahidol University


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Czech Republic

ncbi_isolation_source: broncho-alveolar lavage

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_organism_name: Micromonospora sp. NPDC005211

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: grass rhizosphere soil

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Kunming

ncbi_isolation_source: feces

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Australia

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Ausgem


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Department of Life Science & Medical Bioscience, School of Advanced Science and Engineering, Waseda University


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LAU


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Switzerland

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_country: USA: NH; DHMC

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Dartmouth College


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_38_12


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Bacteroidales bacterium UBA4788

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4788


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Canada

ncbi_submitter: FDA/CFSAN


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-447-E22

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Propionivibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Chitinophaga sp. RCC_12

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_assembly_name: freshwater MAG --- LinL3_bin-0447

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: Gambia

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Procapra picticaudata

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: China CDC


ncbi_organism_name: Olsenella sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: Alcaligenes phenolicus

ncbi_submitter: Linnaeus University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Quzhou

ncbi_isolation_source: fecal swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Staphylococcus epidermidis


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Colombia: Bogota

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Andrena bucephala


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium sp. E188

ncbi_submitter: JCVI


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Neisseria gonorrhoeae SK-93-1035

ncbi_submitter: Broad Institute


ncbi_organism_name: Campylobacter hyointestinalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Desulfomicrobium sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Humanitas Research Hospital


ncbi_organism_name: Sulfuricella sp.

ncbi_submitter: University of Iowa


ncbi_organism_name: Hoeflea sp. D1-CHI-28

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: St. Louis

ncbi_isolation_source: Endovascular

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA

ncbi_isolation_source: fecal material

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Wisconsin-La Crosse


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: skin scrapings from the infected head of a sheep

ncbi_organism_name: Corynebacterium capitovis DSM 44611

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Background Grass (no manure on field)

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: G2 BM SC CEF 5

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_isolation_source: diabetic foot ulcer sample 3

ncbi_organism_name: Corynebacterium sp. LK12

ncbi_submitter: UPenn


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: EPFL


ncbi_organism_name: Chlamydiia bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_submitter: Pennsylvania State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Moero


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Jiangnan University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oliverpabstia intestinalis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Streptomyces sp. NBC_01013

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Sphingobium indicum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 57

ncbi_submitter: Ghent University


ncbi_organism_name: Salmonella sp. SKLX083860

ncbi_submitter: Zhejiang university


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Xiamen University


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-1245

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Kitasatospora griseola

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NBC_01410


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Geobacillus sp. FSL W8-0026

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus;x__unclassified Geobacillus;s__Geobacillus sp. FSL W8-0026


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Flavobacterium sp. UBA6026

ncbi_submitter: University of Queensland


ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB13-128

ncbi_submitter: Broad Institute


ncbi_country: USA: California; Los Angeles County

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: South Africa: Thulasizwe Hopsital

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0137


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Flavobacterium aquicola

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: IMG-taxon 2675903213 annotated assembly

ncbi_organism_name: Lutimaribacter saemankumensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany

ncbi_isolation_source: rectal

ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: intestinal content

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: ChinaCDC


ncbi_country: China

ncbi_isolation_source: hyperthermophilic anaerobic system

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Martinique

ncbi_organism_name: Paraburkholderia caribensis

ncbi_submitter: University of Hong Kong


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured bacterium


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: cold seep

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Vibrio halioticoli NBRC 102217

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Hylemonella sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_assembly_name: Rumen uncultured genome RUG10309

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar Houten


ncbi_assembly_name: Rumen uncultured genome RUG10712


ncbi_isolation_source: Poultry Meat (Wings)

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The German Federal Institute of Risk Assessment (BfR)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Pseudomonas sp. Ga0074129

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Pseudomonas sp. Ga0074129

ncbi_submitter: University of Glasgow


ncbi_country: USA: DC

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria mucosa

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: University of California, Santa Barbara

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: Nigeria

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Cardiff University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: University of Chicago


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_name: Acinetobacter baumannii strain G6290164 partial genome sequence

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy


ncbi_country: Burkina Faso

ncbi_isolation_source: Carcasses

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Dorea formicigenerans


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis PM221

ncbi_submitter: BGI


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_submitter: Instituto Nacional de Salud Publica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Havana


ncbi_country: Colombia

ncbi_isolation_source: Fish tissue

ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: University of Georgia


ncbi_organism_name: Brucella abortus

ncbi_submitter: Madurai kamaraj university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: vagina

ncbi_organism_name: Clostridiales bacterium KA00134

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Colon

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (64um filter)

ncbi_organism_name: Vibrio splendidus ZF-90

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: LJN

ncbi_submitter: Enze Hospital


ncbi_isolate: Fecal samples

ncbi_isolation_source: Lahore

ncbi_strain_identifiers: Fecal samples

ncbi_submitter: UMR 1137 IAME


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: wastewater

ncbi_submitter: University of Zurich


ncbi_country: USA: OK

ncbi_isolation_source: Feces

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: feces

ncbi_submitter: Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: P2 JHB III

ncbi_submitter: University of Pretoria


ncbi_country: Canada: New Brunswick

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: China: Shenzhen

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: BGI


ncbi_country: Australia: Darwin; NT

ncbi_isolation_source: Microcerotermes nervosus termitarium soil

ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Duganella sp. Root336D2

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_submitter: EMG


ncbi_organism_name: Blautia obeum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Acinetobacter baumannii 107m

ncbi_submitter: IBUN


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_organism_name: Arachnia sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroides acidifaciens


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Jersey

ncbi_isolation_source: Oral

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus stratosphericus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: uncultured Brachyspira sp.


ncbi_assembly_name: Rumen uncultured genome RUG500

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Armatimonadia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_country: Russia: Moscow

ncbi_isolation_source: vent. liquor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_organism_name: Candidatus Macondimonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: IMG-taxon 2675903057 annotated assembly

ncbi_organism_name: Saccharopolyspora antimicrobica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: obtained by transformation of the laboratory strain Streptococcus pneumoniae R6

ncbi_organism_name: Streptococcus pneumoniae CCCB

ncbi_strain_identifiers: CCCB

ncbi_submitter: University of Kaiserslautern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae;x__Streptococcus pneumoniae R6;x__Streptococcus pneumoniae CCCB


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Anaerolineae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D10_bin-1005

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Ileo-caecum


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_isolation_source: Humeral head explant

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA: Florida

ncbi_isolation_source: field

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: University of Florida MREC


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- Loclat_bin-13990

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Flavonifractor sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Austria

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: India: Kadwad village; Bidar taluk and district; Karnataka

ncbi_isolation_source: Milk

ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: Madurai Kamaraj University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum of adult cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_country: China

ncbi_isolation_source: seawater surrounding coral Acropora digitifera under thermal stress

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_country: Germany: Berlin

ncbi_isolation_source: gastric antrum

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_assembly_name: freshwater MAG --- Ki2-D4_bin-0631

ncbi_organism_name: uncultured Holophagaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Thailand

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolate: Clostridium neonatale C51

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale C51

ncbi_submitter: universite paris cite


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus sp. FDAARGOS_235

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. FDAARGOS_235


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: Alistipes sp.


ncbi_country: China: Fujian

ncbi_isolation_source: Dead waterfowl

ncbi_organism_name: Riemerella anatipestifer


ncbi_country: Canada: Alberta

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Lethbridge Research and Development Centre


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Kocuria marina

ncbi_submitter: BGI-Shenzhen


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Burkholderia cenocepacia


ncbi_country: Hong Kong

ncbi_isolation_source: sediment

ncbi_organism_name: Escherichia sp. E2593

ncbi_submitter: HongKong University of Science and Technology


ncbi_country: Pakistan: Khyber Pakhtunkhwa

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_country: India

ncbi_organism_name: Xanthomonas campestris pv. azadirachtae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_assembly_name: BEC

ncbi_country: Australia: Queensland

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: BEC

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Pelagibacteraceae bacterium TMED13

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC001857

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 70 year old man who was hospitalized in general ward

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: Chile: Santiago

ncbi_isolation_source: feces

ncbi_submitter: University of Maryland School of Medicine


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: NEB


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_isolation_source: hog; small intestinal contents

ncbi_organism_name: Lactobacillus amylovorus

ncbi_strain_identifiers: CIRM-BIA 2078

ncbi_submitter: Brigham Young University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Firmicutes bacterium UBA4795

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA4795


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Pseudolactococcus chungangensis

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_organism_name: Actinoplanes sp. CA-030573

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Amycolatopsis sp. GA6-003

ncbi_submitter: NIDDK, NIH


ncbi_organism_name: uncultured Draconibacterium sp.


ncbi_organism_name: Nodosilinea sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Ferrovibrio sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Variovorax sp. RHLX14

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Dysgonamonadaceae bacterium


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Universidad de Sonora


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Palacky University Olomouc


ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: wastewater metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_country: USA: Maine_location2

ncbi_isolation_source: potato

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: University of Maine


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Grass with Cow Manure

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: GB T3 LAM CEF 1

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0140R

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Texas

ncbi_isolation_source: Clean room

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NASA Johnson Space Center


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_isolation_source: Stool Culture

ncbi_organism_name: Eubacterium sp.


ncbi_assembly_name: Rumen uncultured genome RUG10648

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: White Oak Rive Estuary; North Carolina

ncbi_isolation_source: Sulfate-methane transisition zone estuary sediments 16-26 cm

ncbi_organism_name: Phycisphaerae bacterium SM23_30

ncbi_submitter: University of Texas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__unclassified Phycisphaerae;s__Phycisphaerae bacterium SM23_30


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1641 from squamous cell carcinomas patient MST029

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Chicago


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Novipirellula herctigrandis

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_organism_name: Flavobacterium sp. Arc3

ncbi_submitter: Linnaeus University


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Apotomis betuletana


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_country: Mexico

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Acetobacter orientalis

ncbi_submitter: Amager and Hvidovre Hospital


ncbi_organism_name: Blautia schinkii


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Oxalobacteraceae bacterium IMCC9480

ncbi_submitter: Division of Biology and Ocean Sciences,Inha University, College of Natural Sciences Inha University


ncbi_country: USA: South Carolina

ncbi_organism_name: Candidatus Enterococcus willemsii

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: China

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Wenchang

ncbi_isolation_source: coastal sand

ncbi_organism_name: Neiella litorisoli

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Nasopharyngeal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: Soil

ncbi_organism_name: Planobispora rosea

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_assembly_name: IMG-taxon 2698536699 annotated assembly

ncbi_country: USA: Harvard Forest; Massachusetts

ncbi_organism_name: Bradyrhizobium lablabi

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Nitrosopumilus sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFOXYB2_FULL_57_15


ncbi_country: China: Suzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Suzhou Hospital of Traditional Chinese Medicine


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Reyranella sp.

ncbi_submitter: Northeastern University


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge

ncbi_isolation_source: deep-sea hydrothermal vent chimney

ncbi_organism_name: Desulfurobacterium thermolithotrophum DSM 11699

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_isolation_source: human gut

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-9528

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Great Salt Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: University of Utah


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_assembly_name: Rumen uncultured genome RUG13914

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Rhizorhapis sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa

ncbi_organism_name: Clostridium botulinum D str. CCUG 7971

ncbi_strain_identifiers: CCUG 7971

ncbi_submitter: National Veterinary Institute (SVA)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum D;x__Clostridium botulinum D str. CCUG 7971


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: Mexico: Sinaloa; Culiacan

ncbi_isolation_source: river sediment

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A.C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_organism_name: Ancylobacter radicis

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P78P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_02_FULL_44_36b


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_organism_name: Lentilactobacillus otakiensis

ncbi_submitter: Novonesis A/S


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: dianzhenduan


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Delftia tsuruhatensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Italy: Venice

ncbi_organism_name: Syntrophotalea acetylenica

ncbi_submitter: US Geological Survey


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Russia: Kirov

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences


ncbi_country: Tanzania: Dar es Salaam

ncbi_submitter: University of Bergen


ncbi_country: China: Zhejiang

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: United Kingdom

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_country: Germany

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Stenotrophomonas muris

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Greece

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_country: Thailand: Ubon; Pibul

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Caecum

ncbi_organism_name: Dubosiella newyorkensis


ncbi_country: Australia: Sydney

ncbi_isolation_source: Room 7

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Oxford


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_submitter: China Agricultural University


ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera thermopropionivorans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera thermopropionivorans


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: BGI


ncbi_isolation_source: not provided

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Bacteroides intestinalis


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Gluconobacter sp. P5H9_d

ncbi_submitter: Freiburg University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Qinghai

ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: Canada: British Columbia

ncbi_isolation_source: sediment from Mahoney Lake

ncbi_organism_name: Candidatus Aegiribacteria sp. MLS_C

ncbi_submitter: University of Cincinnati

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__FCB group incertae sedis;g__Candidatus Aegiribacteria;x__unclassified Candidatus Aegiribacteria;s__Candidatus Aegiribacteria sp. MLS_C


ncbi_organism_name: Bacillus cereus


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Beijing Genome Institute


ncbi_isolation_source: non-pure culture

ncbi_organism_name: Anabaena sp. LE011-02

ncbi_submitter: Oregon State University


ncbi_organism_name: Stutzerimonas kunmingensis


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:Florida; Big Torch Key

ncbi_organism_name: Micromonospora sp. WMMD712

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Candidatus Vondammii sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;g__Candidatus Vondammii;x__unclassified Candidatus Vondammii;s__Candidatus Vondammii sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium RIFCSPLOWO2_12_FULL_50_35


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella quasivariicola

ncbi_submitter: URMITE


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: sanford; colorado

ncbi_isolation_source: Hybrid Striped Bass

ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: Mississippi State University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Paenibacillus vulneris

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Anal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_country: USA: MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio metoecus

ncbi_submitter: University of Alberta


ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Bittarella (ex Durand et al. 2017);s__Bittarella massiliensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Bittarella (ex Durand et al. 2017);s__Bittarella massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Kitasatospora sp. NPDC051914

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: The University of Texas at San Antonio


ncbi_country: USA: Lake Huron

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Chicago


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Tibet

ncbi_isolation_source: Tibet kefir

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Beijing Technology and Business University


ncbi_country: Austria

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Streptomyces misionensis


ncbi_organism_name: Serratia marcescens

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium aquikefiri

ncbi_submitter: Teagasc


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Maimonides Biomedical Research Institute of Cordoba


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: ZZD

ncbi_submitter: Enze Hospital


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acidovorax sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Aeromonas popoffii

ncbi_submitter: Sichuan University


ncbi_organism_name: Asticcacaulis sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Nocardia asiatica

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Streptomyces sp. NPDC048473

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: University of Cadiz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine