ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Indian Veterinary Research Institute


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Salmonella sp. 741265124_HBA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_assembly_level: Scaffold

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Chryseobacterium sp. 22543

ncbi_submitter: Yantai University


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Micromonospora chalcea


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The First Hospital of Lanzhou University


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Flavobacterium sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_country: Spain: Santa pola

ncbi_isolation_source: banquettes

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of Alicante


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_assembly_name: IMG-taxon 2700988728 annotated assembly

ncbi_organism_name: Roseovarius litoreus

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Wuhan

ncbi_isolation_source: river water

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: The First Affiliated Hospital of Medical School


ncbi_assembly_name: Rumen uncultured genome RUG757

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Taizhou

ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia sp. R20

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea:Sunchang

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio lentus


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_assembly_name: Rumen uncultured genome RUG10654

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succinivibrio sp.


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Desulfovibrio sp. UBA6121

ncbi_submitter: University of Queensland


ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcaceae cyanobacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: University of Barcelona


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: San Marcos; TX

ncbi_isolation_source: Wild adult 3.4

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Texas State University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Brigham & Women's Hospital


ncbi_country: Taiwan

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Azir

ncbi_submitter: National Chung Cheng University


ncbi_isolation_source: Aphanamixis polystachya leaf

ncbi_organism_name: Acinetobacter lactucae

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


gtdb_type_species_of_genus: t

ncbi_organism_name: Termitidicoccus mucosus

ncbi_submitter: Central China Normal University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium GW2011_GWB1_43_11


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Avibacterium volantium

ncbi_submitter: SRCAMB


ncbi_submitter: Zhejiang university


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: College of Basic Medical Science


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Henan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S10

ncbi_organism_name: Blautia sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: uncultured Parvibaculaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_isolation_source: vagina

ncbi_organism_name: Mageeibacillus indolicus 0009-5

ncbi_submitter: JCVI


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Mexico: Chiapas

ncbi_isolation_source: nodules

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Universidad Tecnologica de la Selva


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Ares Genetics


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangxi

ncbi_organism_name: Phycicoccus mangrovi

ncbi_submitter: Life sciences Institute


ncbi_country: USA: MI

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Aliarcobacter cibarius

ncbi_submitter: Ghent University


ncbi_country: Japan

ncbi_isolation_source: Dental biofilm

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_country: USA: Alabama

ncbi_isolation_source: rhizosphere of the salt marsh grasses

ncbi_organism_name: Gallionella sp.

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Auribacterota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Auribacterota;x__unclassified Candidatus Auribacterota;s__Candidatus Auribacterota bacterium


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_isolation_source: Chinese food lobster sauce

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: GuiZhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Klebsiella pneumoniae 140_1040

ncbi_submitter: JCVI


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: Lachnoclostridium sp. An76

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Ecuador: Guayaquil

ncbi_isolation_source: brochoalveolar lavage

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Guayaquil


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Czech Republic

ncbi_isolation_source: spleen

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: litter

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: LIT2 A36

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: farm-soil

ncbi_organism_name: Allopusillimonas soli

ncbi_submitter: Key Laboratory of Marine Biogenetic Resources State of Oceanic Administration


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: University of Wisconsin Hospital

ncbi_organism_name: Enterococcus faecalis EnGen0422

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Marinobacterium sp. xm-a-152

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: France: Boulogne-sur-mer

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Switzerland: Zurich

ncbi_submitter: University of Zurich


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfurobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13810

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas aeruginosa XMG

ncbi_strain_identifiers: XMG

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Nigeria

ncbi_isolation_source: nasal swab

ncbi_submitter: Igbinedion University Okada


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Tap water/sink

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Norway: Bergen

ncbi_isolation_source: Pleural empyema

ncbi_organism_name: Eikenella corrodens

ncbi_submitter: Haukeland University Hospital


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Lutispora sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Estonia

ncbi_isolation_source: milk

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_organism_name: Aquificaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11506

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_12_FULL_43_11


ncbi_country: Myanmar: Yangon Division; Yangon; Pyi Tharyar Rd

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Cadiz


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. RI_10P079


ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: EPFL


ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: Friedrich Schiller University Jena


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Streptomyces sp. NPDC057621

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands

ncbi_isolation_source: Ascites

ncbi_organism_name: Enterococcus faecium EnGen0012

ncbi_submitter: Broad Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Buchananbacteria bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Buchananiibacteriota;x__unclassified Candidatus Buchananbacteria;s__Candidatus Buchananbacteria bacterium


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: Rectal swab

ncbi_submitter: JCVI


ncbi_organism_name: Xanthomonas campestris pv. papavericola

ncbi_strain_identifiers: NCPPB 2970

ncbi_submitter: University of Exeter


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 0509

ncbi_submitter: The University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kasetsart University


ncbi_organism_name: Phycicoccus elongatus

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Russia: North Caucasus region

ncbi_organism_name: Neorhizobium galegae

ncbi_submitter: ARRIAM


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Baltimore

ncbi_isolation_source: blood

ncbi_submitter: Ares-Genetics


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans


ncbi_organism_name: uncultured Tidjanibacter sp.


ncbi_isolation_source: surface water

ncbi_submitter: Norwegian University of Life Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasal discharge

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Coxiella burnetii RSA 331

ncbi_strain_identifiers: RSA 331

ncbi_submitter: TIGR


ncbi_organism_name: Butyricicoccus pullicaecorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bacillus cereus group sp. BC251

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC251


ncbi_country: Sweden

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: patient with pyelonephritis

ncbi_organism_name: Escherichia coli J96

ncbi_submitter: Princeton University


ncbi_assembly_name: Rumen uncultured genome RUG10275

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Peptoniphilus koenoeneniae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Microbial Institiue for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: University of Cadiz


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: stool

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_organism_name: Pectobacterium araliae

ncbi_submitter: Department of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University


ncbi_country: Spain

ncbi_organism_name: Xanthomonas nasturtii

ncbi_submitter: University of Exeter


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: vitreous humor

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Mississippi Medical Center


ncbi_isolation_source: bioreactor

ncbi_organism_name: Fusobacteriaceae bacterium UBA2433

ncbi_submitter: University of Queensland


ncbi_country: South Korea: East sea: Dokdo

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology


ncbi_country: United Kingdom: Cambridge

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Taylorella equigenitalis ATCC 35865

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Vicingus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University of Groningen


ncbi_isolation_source: horse manure composting

ncbi_organism_name: Acetivibrio thermocellus

ncbi_submitter: Heilongjiang University of Science and Technology


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp1 AA121

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp1 AA121

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Massilia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Aeromonas molluscorum

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: uncultured Pseudobutyrivibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Amnibacterium sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Jeonbuk National University


ncbi_organism_name: uncultured Acetobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Aequorivita sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Prochlorococcaceae cyanobacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: beijing


ncbi_organism_name: Aquimarina sp.


ncbi_organism_name: Actinoplanes sp. URMC 104

ncbi_strain_identifiers: URMC 104

ncbi_submitter: University of Rochester


ncbi_organism_name: Blautia wexlerae


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: University of Fribourg


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- KR2_bin-0756

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Chile: Tarapaca Salar de Huasco

ncbi_isolation_source: shallow sediments of the Salar de Huasco lagoon

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_submitter: Shandong University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Colorado State University


ncbi_organism_name: Rossellomorea marisflavi

ncbi_submitter: NJAU


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Candidatus Macondimonas sp.


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: freshwater

ncbi_submitter: University of Queensland


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: pharynx; healthy adolescent

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: TAILORED-Treatment project


ncbi_country: Australia: Victoria

ncbi_isolation_source: aerobically stored lamb

ncbi_organism_name: Brochothrix thermosphacta

ncbi_submitter: CSIRO Agriculture and Food; Food Safety and Stability Group


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Universidad de Concepcion


ncbi_country: Greece

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_isolation_source: human gut

ncbi_organism_name: Collinsella sp. AF02-46-1

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Flavobacteriales bacterium UBA6239


ncbi_isolation_source: urine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: California Department of Public Health


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: artisanal lactic starter (for Gruyere de Comte cheese making)

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_country: USA: Rochester

ncbi_isolation_source: sap

ncbi_organism_name: Sphingomonas echinoides

ncbi_submitter: Rochester Institute of Technology


ncbi_country: China: Shaanxi; Xianyang Lake

ncbi_isolate: XYC

ncbi_isolation_source: sediments

ncbi_strain_identifiers: XYC

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Nitrospirota;c__;o__;f__;g__Candidatus Magnetomicrobium;s__Candidatus Magnetomicrobium cryptolimnococcus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__Nitrospirota incertae sedis;g__Candidatus Magnetomicrobium;s__Candidatus Magnetomicrobium cryptolimnococcus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paenibacillus sp. FSL H8-0537

ncbi_submitter: Penn State


ncbi_organism_name: Enterococcus innesii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Chloroflexota bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Jilin Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Sediminibacterium goheungense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Colombia: La Guajira

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: China: Beijing

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_country: Australia: Orpheus Island

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Paraprevotella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-296

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_strain_identifiers: new MAG-296

ncbi_submitter: Micoorganism

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Norway: Bergen

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rhodococcus sp. OK302

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. OK302


ncbi_country: China: Yancheng

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_submitter: University of Texas at Dallas


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: wound; right hand

ncbi_organism_name: Vandammella animalimorsus

ncbi_submitter: National Microbiology Laboratory/ Public Health Agency of Canada


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Toho University


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Limosilactobacillus fastidiosus

ncbi_submitter: University of Alberta


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC048312

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Hungatella hathewayi WAL-18680

ncbi_submitter: University of Technology Sydney


ncbi_country: USA: PA

ncbi_isolation_source: Jejunum

ncbi_submitter: FDA/CFSAN


ncbi_country: Singapore

ncbi_isolation_source: environment

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Pseudobutyrivibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Viet Nam: Ho Chi Minh City

ncbi_organism_name: Streptomyces sp. SS1-1

ncbi_submitter: Center for Research and Application in Bioscience


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Tsinghua University


ncbi_country: Colombia: Medellin

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Alianza científico - tecnológica Nucleosensor-TB


ncbi_organism_name: [Kitasatospora] papulosa


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Wildermuthbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wildermuthiibacteriota;x__unclassified Candidatus Wildermuthbacteria;s__Candidatus Wildermuthbacteria bacterium


ncbi_country: USA:Fort Sam Houston

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miami University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0061

ncbi_submitter: Broad Institute


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Algeria

ncbi_isolation_source: nasal carriage

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU


ncbi_country: France: Nantes

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Romania: Brasov

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cantacuzino National Institute of Medico-Military Research-Development


ncbi_organism_name: Gemmobacter sp.

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Driefontein mine in Carletonville district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Nitrospira japonica

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas at Austin


ncbi_country: USA: Ft. Benning; Georgia

ncbi_isolation_source: Purulent absess from military trainee

ncbi_submitter: Uniformed Services University


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Clostridium carboxidivorans P7

ncbi_submitter: Mississippi State University


ncbi_country: Belgium

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Aarhus University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Fujian Province

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Burkholderiales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gallintestinimicrobium sp.


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 17_1


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Pseudomonas sp. IPO3749

ncbi_submitter: Wageningen University & Research


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Salinisphaerales bacterium


ncbi_organism_name: Aureimonas phyllosphaerae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Emcibacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Muribaculaceae bacterium


ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_country: China

ncbi_organism_name: Marinobacterium marinum

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: urine

ncbi_submitter: Lebanese American University (LAU), Byblos campus


ncbi_isolation_source: chicken

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 22510-1


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: Beijing Genome Institute


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_9 depth 9-12 cm

ncbi_organism_name: Candidatus Coatesbacteria bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Coatesiibacteriota;x__unclassified Candidatus Coatesbacteria;s__Candidatus Coatesbacteria bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: throat

ncbi_organism_name: Staphylococcus aureus F77710

ncbi_submitter: Broad Institute


ncbi_country: China: Changzhou;Jiangsu

ncbi_isolation_source: Aerobic activated sludge

ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: South China University of Technology


ncbi_country: USA: DC

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: US Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_country: Korea

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Yonsei University


ncbi_country: India: Aurangabad


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Lewinella sp.

ncbi_submitter: marine college, shandong university


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli 2.4168

ncbi_submitter: E. coli Reference Center


ncbi_country: USA: California

ncbi_submitter: University of Maryland, College Park


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: MGH 41


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Cardiobacterium hominis


ncbi_organism_name: Sinorhizobium sp. K101

ncbi_submitter: University of Manitoba


ncbi_organism_name: Staphylococcus capitis subsp. urealyticus

ncbi_submitter: Imperial College London


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Microbacterium sp.


ncbi_country: Philippines: Benguet

ncbi_isolation_source: Copper Mine Tailings

ncbi_organism_name: Chlorogloeopsis sp. ULAP01

ncbi_submitter: University of the Philippines Diliman


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phycisphaera mikurensis NBRC 102666

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__Phycisphaeraceae;g__Phycisphaera;s__Phycisphaera mikurensis;x__Phycisphaera mikurensis NBRC 102666


ncbi_country: China: Yuncheng

ncbi_isolation_source: salt lake

ncbi_organism_name: Microbacterium salsuginis

ncbi_submitter: Xinxiang Medical University


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: soil sediment

ncbi_organism_name: Exiguobacterium sp. s83

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s83


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2024EL-00780


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella sp. 6356

ncbi_submitter: Zhejiang university


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Salmonella sp. NW529

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces sp. NPDC088180

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Universidad de Leon


ncbi_organism_name: bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Lonepinella sp. BR2923

ncbi_submitter: The University of Queensland


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_isolate: AOP29_E1_surf _bin _6

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: AOP29_E1_surf _bin _6

ncbi_submitter: Genoscope


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Escherichia sp. WS436

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rochdale


ncbi_organism_name: Pseudomonas sp. D1-36

ncbi_submitter: KAUST


ncbi_organism_name: Faecalimonas umbilicata

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Balneola sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Brucella cytisi

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG591

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Rhodoferax sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pediococcus parvulus

ncbi_submitter: University of British Columbia


ncbi_organism_name: Parasphingorhabdus sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Desulfohalobiaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Italy

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: China: Shaanxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Candidatus Onthomonas sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Onthomonas;x__unclassified Candidatus Onthomonas;s__Candidatus Onthomonas sp.


ncbi_assembly_name: Rumen uncultured genome RUG12890

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_country: Thailand

ncbi_isolation_source: soil

ncbi_organism_name: Planotetraspora sp. A-T 1434

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)


ncbi_country: China: suburbs; Hangzhou

ncbi_isolation_source: raw cow milk

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Zhejiang Gongshang University


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCPF17_046

ncbi_submitter: University of California, Irvine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: lesion

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Tennessee


ncbi_organism_name: Clostridium tertium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: India: Vandanam; Alleppey; Kerala

ncbi_organism_name: Streptomyces californicus

ncbi_submitter: Department of Botany, Kayavattom Campus, University of Kerala, Trivandrum


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_organism_name: Rhodococcus globerulus

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Halieaceae bacterium UBA3019

ncbi_submitter: University of Queensland


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_country: France: Dijon

ncbi_organism_name: Bacillus sp. B4EP4a

ncbi_submitter: University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. B4EP4a


ncbi_submitter: FDA/CFSAN


ncbi_country: South Korea

ncbi_isolation_source: ginseng soil

ncbi_organism_name: Pseudoduganella ginsengisoli

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: yogurt fermentation

ncbi_organism_name: Lactobacillus acidophilus

ncbi_strain_identifiers: WG-LB-IV

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Wyoming; Yellowstone National Park; Mushroom Spring

ncbi_isolation_source: phototrophic microbial mat

ncbi_organism_name: Chloroflexus sp. MS-G

ncbi_strain_identifiers: MS-G

ncbi_submitter: The Pennsylvania State University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: Poland: Zielona Gora

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease swab

ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Cyanobacteria bacterium J06554_11

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06554_11


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Thailand: Surin

ncbi_isolation_source: Pus

ncbi_submitter: Faculty of Public Health


ncbi_country: Singapore

ncbi_isolation_source: Urine

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: bile

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: Sepsis

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: human

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Sri Lanka: Colombo

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Shandong;Rongcheng

ncbi_isolation_source: marine sediment sample

ncbi_organism_name: Glaciecola sp. XM2

ncbi_submitter: Shandong University at Weihai


ncbi_country: South Korea: Daejeon Metropolitan City

ncbi_isolation_source: an upflow anaerobic sludge blanket reactor

ncbi_organism_name: Shinella zoogloeoides

ncbi_strain_identifiers: DSM 287

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_isolation_source: Marine sediment

ncbi_organism_name: Flagellimonas yonaguniensis

ncbi_submitter: Insititute of Oceanology, Chinese Academy of Sciences


ncbi_country: China: Zhejiang

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: USA: NC

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O121:H19;x__Escherichia coli O121:H19 str. 2011C-3609


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: infant saliva

ncbi_organism_name: Weissella cibaria

ncbi_submitter: MACROGEN, Inc.


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Sporichthyaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2459

ncbi_submitter: Broad Institute


ncbi_country: Spain: Santander

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Brazil: Rio Grande do Sul; Camaqua

ncbi_isolation_source: Rice (Oryza sativa L.) soil

ncbi_organism_name: Pseudomonas sp. FeS53a

ncbi_submitter: UFRGS


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Sichuan University


ncbi_isolation_source: grass

ncbi_organism_name: Xanthomonas graminis pv. graminis

ncbi_submitter: CEBITEC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas graminis;x__Xanthomonas graminis pv. graminis


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Mali

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: clinical 6

ncbi_submitter: University of Washington


ncbi_organism_name: Bifidobacterium boum


ncbi_country: Laos

ncbi_organism_name: Leptospira interrogans str. UI 12758

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans str. UI 12758


ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Chicken carcass (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Mississippi State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus pneumoniae BR1064

ncbi_submitter: Yale University


ncbi_isolation_source: core

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Yuan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer N sample 29 PSU in less than .8 micron size fraction

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Aeriscardovia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: Victoria

ncbi_isolation_source: Foam on activated sludge

ncbi_organism_name: Gordonia amarae

ncbi_submitter: La Trobe University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Japan

ncbi_organism_name: Leucobacter exalbidus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Phoenicibacter congonensis

ncbi_submitter: URMITE


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Shewanella algae

ncbi_submitter: National Chung Cheng University


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium UBA2774


ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division CPR2;s__candidate division CPR2 bacterium GW2011_GWC1_39_9


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Methyloversatilis discipulorum

ncbi_submitter: JGI


ncbi_country: Indian Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Norway

ncbi_isolation_source: caecum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Norwegian Veterinary Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_isolation_source: human gut

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EBI


ncbi_country: South Korea: Southern sea of Yeosu

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Endozoicomonas atrinae

ncbi_submitter: Aarhus University


ncbi_submitter: Toho University


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: Fermented Fish

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Agro-industry, Prince of Songkla University, wageningen university


ncbi_country: USA: Seattle

ncbi_isolation_source: surgical wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IFSC USP


ncbi_country: United Kingdom: London

ncbi_isolation_source: Not specified

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Cardiff University


ncbi_country: Colombia: Giron; Santander

ncbi_isolation_source: citrus soil

ncbi_organism_name: Enterobacter sp. CP102

ncbi_submitter: Corporacion para la Investigacion de la Corrosion


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: milk

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_organism_name: Actinophytocola oryzae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Saganbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__Candidatus Saganbacteria bacterium


ncbi_country: China

ncbi_isolation_source: fresh feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_country: China: Dongguan

ncbi_organism_name: Salmonella sp. L-S1857

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_country: Austria: Kremesberg 11

ncbi_isolation_source: rumen epithelial tissue

ncbi_organism_name: Campylobacter sp. JMF_05 ED3

ncbi_strain_identifiers: JMF_05 ED3

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Malaysia

ncbi_isolation_source: Salad

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Thong Kwai LIn


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa PA1

ncbi_submitter: Department of Microbiology, The Third Military Medical University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-215

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Rubrivivax sp.

ncbi_strain_identifiers: new MAG-215

ncbi_submitter: Micoorganism


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Germany: Berlin

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Pseudomonas sp. URMO17WK12:I11

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_assembly_name: freshwater MAG --- Day6-4_bin-310

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces malaysiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Fusobacterium sp. DD2

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Brazil

ncbi_isolation_source: Liver Fluid

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: USA: PA

ncbi_isolation_source: dairy cow feces

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Nigeria: Yemetu; Ibadan

ncbi_isolation_source: hospital wastewater

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University at Albany, State University of New York


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Mahidol University


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: USA: Hawaii Island

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: HICO

ncbi_submitter: University of California Merced

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: USA: NE

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfuricurvum sp.


ncbi_assembly_name: freshwater MAG --- MJ110927A_bin-611

ncbi_organism_name: uncultured Holophagaceae bacterium


ncbi_country: New Zealand: Christchurch

ncbi_strain_identifiers: CMB53_CON L1:2

ncbi_submitter: University of Canterbury


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Paralachnospira sangeri

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Paralachnospira;s__Candidatus Paralachnospira sangeri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Paralachnospira;s__Candidatus Paralachnospira sangeri


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Phycisphaerales bacterium UBA1924

ncbi_submitter: Tang lab


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0123

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-12588

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Chloroflexota bacterium


ncbi_organism_name: Erythrobacter aureus

ncbi_submitter: Ocean University of China


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Parma


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: Plant and Food Research


ncbi_organism_name: Streptomyces sp. NPDC127074

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Salmonella sp. 741265110_PST

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Balneola sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_organism_name: Lachnospira eligens


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: Streptomyces sp. NPDC060187


ncbi_organism_name: Bradymonadia bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Nanjing University


ncbi_submitter: University of verona


ncbi_organism_name: Salmonella sp. NW582

ncbi_submitter: Sichuan University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Mesquite Bay; Texas

ncbi_isolation_source: shallow marine sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Limnophora tigrina


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Klebsiella sp. PB7

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Phototrophicaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Candidatus Onthovivens sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Onthovivens;x__unclassified Candidatus Onthovivens;s__Candidatus Onthovivens sp.


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_country: USA: California

ncbi_isolation_source: environmental

ncbi_organism_name: Mesorhizobium sp. C089B

ncbi_submitter: Washington State University


ncbi_assembly_name: Salmonella enterica CVM N46848-R v1.0

ncbi_country: USA: OR

ncbi_isolation_source: Pork Chops

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: Oral microbiome

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Sofia University "St. Kliment Ohridski"


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Streptomyces sp. NPDC050803

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bariatricus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Colombia

ncbi_isolation_source: Environment

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Antioquia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Candidatus Nemicrothrix sp.

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__environmental samples;s__uncultured Candidatus Nemicrothrix sp.


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sri Lanka: Kurunegala

ncbi_isolation_source: rice rhizosphere

ncbi_organism_name: Pseudomonas vlassakiae

ncbi_submitter: KU Leuven


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: USUHS


ncbi_country: Canada: Guelph

ncbi_submitter: University of Guelph


ncbi_submitter: Molecular Genetics Laboratory, Department of Biological Sciences, School of Science, Tokyo Metropolitan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: disinfectant-free drinking water; site 4

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Glasgow


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Bern


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T59609

ncbi_submitter: Broad Institute


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_country: Norway

ncbi_isolation_source: Head ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China

ncbi_isolation_source: fermented food

ncbi_organism_name: Lactiplantibacillus sp. C232

ncbi_submitter: Kunming University of Science and Technology


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_assembly_name: freshwater MAG --- KT6_bin-382

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_isolation_source: Factory

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_assembly_name: Rumen uncultured genome RUG14332

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: South Korea: Bonghwa

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: POSTECH


ncbi_country: USA: Florida

ncbi_submitter: University of California, Davis


ncbi_country: Hungary: Szeged wastewater treatment plant

ncbi_isolation_source: Anaerobic sludge from Szeged Municipal wastewater plant s biogas plant Biogas Plant

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: University of Szeged


ncbi_country: United Kingdom

ncbi_organism_name: Shinella sp. SUS2

ncbi_submitter: University of Exeter


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of California Berkeley


ncbi_isolation_source: Hospital surface

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine