ncbi_country: USA: Wisconsin

ncbi_organism_name: Fibrobacter sp. UWR1

ncbi_submitter: DOE Joint Genome Institute


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: HRSE 34

ncbi_submitter: Chung-Ang University


ncbi_country: USA: CA

ncbi_isolation_source: Death Valley National Monumentt

ncbi_organism_name: Bacillus vallismortis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Baton Rouge; LA

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


gtdb_representative: t

ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acetivibrio thermocellus AD2


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


gtdb_type_species_of_genus: t

ncbi_assembly_level: Scaffold

ncbi_organism_name: Thermobrachium celere DSM 8682

ncbi_refseq_category: reference genome

ncbi_submitter: Tampere University of Technology

ncbi_type_material_designation: assembly from type material


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: California

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: respiratory tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_submitter: Kiel University


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lelliottia nimipressuralis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolate: AOP7_E1_surf _bin _8

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP7_E1_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: Gallionella sp.

ncbi_submitter: EPFL


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Ectopseudomonas khazarica

ncbi_submitter: Ocean University of China


ncbi_organism_name: Pseudomonas sp. GW6

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A.C. (CIAD)


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Minnesota


ncbi_organism_name: Thioclava sp.


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp. NPDC048516

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_strain_identifiers: ZXooT

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chouaib Doukkali University


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Moraxellaceae bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: Final

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Instituto de Biotecnologia y Biologia Molecular


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Thermocrinis sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prochlorococcaceae cyanobacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Negativicutes bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Pseudothioglobus sp. nBUS_23

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Pseudothioglobus sp. nBUS_23


ncbi_organism_name: Rickettsia sibirica

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Gemmiger stercoravium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;s__Candidatus Gemmiger stercoravium


ncbi_country: Pacific Ocean: South China Sea

ncbi_isolation_source: deap sea cold seep sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: bacterium HR18

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_assembly_name: freshwater MAG --- VK3_bin-0481

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: Ondokuz Mayis University, Faculty of Veterinary Medicine


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Rhizobium beringeri

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Microbispora sp. NBC_01389

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG233

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Haikou

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Norway

ncbi_isolation_source: soil

ncbi_organism_name: Plastoroseomonas arctica

ncbi_submitter: UNIVERSITY OF GENT


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Feral swine feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_submitter: Ausgem


ncbi_assembly_name: Rumen uncultured genome RUG590

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bdellovibrio sp. ZAP7


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Portugal

ncbi_isolation_source: Borehole HDN1; spa

ncbi_organism_name: Aquicella lusitana

ncbi_submitter: UPPSALA UNIVERSITY


ncbi_assembly_name: IMG-taxon 2636415977 annotated assembly

ncbi_organism_name: Paracoccus alcaliphilus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Hungatella sp.


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Pelobium sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Hainan province

ncbi_isolate: MIAOwWpum

ncbi_organism_name: Wolbachia endosymbiont of Wiebesia pumilae

ncbi_strain_identifiers: MIAOwWpum

ncbi_submitter: Nankai University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Spain

ncbi_organism_name: Enterococcus faecium EnGen0042

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Fusobacterium periodonticum ATCC 33693

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Streptococcus suis

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B34(2017)

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Italian National Research Council (CNR)


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: China Agricultural University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: West China Hospital


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_country: Canada: Montreal

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: South Korea

ncbi_isolation_source: dried garlic

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bifidobacterium crudilactis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: DC

ncbi_isolation_source: Abscess

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: Municipal Pensacola Beach; FL

ncbi_isolation_source: beach sand

ncbi_organism_name: Hyphomonadaceae bacterium UBA5336

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_assembly_name: IMG-taxon 2599185152 annotated assembly

ncbi_organism_name: Streptococcus gallolyticus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: University of Veterinary and Animal Sciences, Lahore


ncbi_country: Italy

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Oman

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Israel

ncbi_isolation_source: rectal

ncbi_submitter: tel-aviv sourasky medical center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-31

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Planctomycetota bacterium

ncbi_strain_identifiers: new MAG-31

ncbi_submitter: Micoorganism


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: New York; University of Rochester

ncbi_isolation_source: laboratory

ncbi_submitter: University of Rochester School of Medicine & Dentistry


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Sporosarcina ureae

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Faucicola osloensis

ncbi_submitter: China CDC


ncbi_organism_name: Pantoea allii

ncbi_submitter: University of Georgia


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sulfurimonas sp.


ncbi_country: Australia: South Australia

ncbi_isolation_source: Bile of chicken infected with Spotty Liver Disease

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Crocinitomicaceae bacterium TMED16

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Norway: Viken

ncbi_isolation_source: Silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Acinetobacter baumannii ACICU

ncbi_strain_identifiers: ACICU

ncbi_submitter: CNR - National Research Council


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Calgary


ncbi_organism_name: Pantoea stewartii subsp. indologenes

ncbi_submitter: Hainan University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Thiobacillaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Algeria

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: IRD


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Lund University


ncbi_country: USA: California

ncbi_submitter: University of Maryland, College Park


ncbi_country: Japan

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Blautia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Spain

ncbi_isolation_source: Plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of California


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Eubacterium plexicaudatum


ncbi_assembly_level: Chromosome

ncbi_assembly_name: BSN148 Contigs

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: uncultured Novosphingobium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Shouchella clausii

ncbi_submitter: Applied Microbiology, Faculty of Agriculture, Bioscience and Biotechnology, Kyushu University


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Herminiimonas sp.

ncbi_submitter: Aarhus University


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_organism_name: Micromonospora sp. LOL_027

ncbi_submitter: Academia Mexicana de Ciencias


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Mesorhizobium sp. M0013

ncbi_submitter: Washington State University


ncbi_country: China: Jinan

ncbi_isolation_source: Bumble bee gut

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: China Agricultural University


ncbi_country: New Zealand: Auckland

ncbi_organism_name: Pseudomonas syringae pv. atrofaciens

ncbi_strain_identifiers: ICMP 4394

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. atrofaciens


ncbi_organism_name: Escherichia coli

ncbi_submitter: WRAIR-Africa


ncbi_country: Chile

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: dairy product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: surface sediments

ncbi_organism_name: Paenarthrobacter nitroguajacolicus

ncbi_submitter: Shandong University Qingdao Campus


ncbi_organism_name: Bifidobacterium fermentum

ncbi_submitter: Teagasc


ncbi_country: Poland: Silesia; next to Bytom city

ncbi_isolation_source: Surface sterilized roots of Sida hermaphrodita

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Helmholtz Zentrum Muenchen GmbH


ncbi_country: Russia: Nizhny Novgorod

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_country: China: JiangSu

ncbi_isolation_source: Suppuration

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: Thailand

ncbi_organism_name: Burkholderia thailandensis E0444

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: Antarctica

ncbi_organism_name: Microlunatus antarcticus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Jiangsu

ncbi_isolation_source: rectum

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Helicobacter pylori SA302A

ncbi_submitter: MHH


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Faecalibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Nose throat swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 516

ncbi_submitter: INRA STLO


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Anhui Medical University; Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_submitter: CHU de Bicetre


ncbi_country: USA: College Station; TX

ncbi_isolation_source: salivary gland

ncbi_organism_name: Providencia stuartii

ncbi_strain_identifiers: Crippen

ncbi_submitter: Texas A&M University


ncbi_organism_name: Xanthomonas hortorum

ncbi_strain_identifiers: WHRI 5689A

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Caldimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Raskinella chloraquaticus

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces sp. NPDC014820

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Conexibacter sp.


ncbi_country: Belgium

ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Pacific Ocean

ncbi_isolation_source: seaweed

ncbi_organism_name: Pseudoalteromonas luteoviolacea S4060-1

ncbi_submitter: Technical University of Denmark


ncbi_isolate: Yryla

ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter bizzozeronii

ncbi_strain_identifiers: Yryla

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_submitter: University of Waterloo


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_organism_name: Desulfobacterales bacterium


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: Broncho-alveolar lavage

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Odense University Hospital, Denmark


ncbi_country: China: Zhejiang

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Tucson; AZ

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: GA

ncbi_isolation_source: stream

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Aquidulcibacter sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Mahidol University


ncbi_organism_name: Piscinibacter sp.


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: soil

ncbi_organism_name: Rahnella aceris

ncbi_submitter: Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: South Korea: Yecheon

ncbi_isolation_source: fresh water

ncbi_organism_name: Sphingomonas sp. BGYR3

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_submitter: Toho University


ncbi_country: China

ncbi_isolation_source: pleural effusion

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Secone University Hospital, Sichuan University


ncbi_isolation_source: plantar heel

ncbi_organism_name: Staphylococcus epidermidis NIHLM031

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Komeilibacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Komeiliibacteriota;x__unclassified Candidatus Komeilibacteria;s__Candidatus Komeilibacteria bacterium


ncbi_country: South Korea: Seoul

ncbi_organism_name: Sphingomonas aurea

ncbi_submitter: Seoul Women's university


ncbi_isolation_source: lake water

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Peptoniphilaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Tissierellales bacterium

ncbi_submitter: East China University of Science and Technology


ncbi_country: Australia: NSW

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Murdoch University


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: China: Heihe; Heilongjiang

ncbi_organism_name: Bradyrhizobium liaoningense

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Alistipes finegoldii


ncbi_country: Thailand

ncbi_isolation_source: the shrimp farm in eastern Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Methylovulum sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_country: China: Hangzhou

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: USA: Richmond Mine at Iron Mountain; CA

ncbi_isolation_source: fungal streamer biofilms collected from the 5-way site of the Richmond Mine at Iron Mountain; California. The pH of the acid mine drainage the biomass was sampled from was 0.98; and the temperature was 38C

ncbi_organism_name: Sulfobacillus acidophilus

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus acidophilus


ncbi_country: Finland: Lake Saimaa

ncbi_isolation_source: lice collected 2009 through 2017 from Pusa hispida saimensis

ncbi_organism_name: Deinococcus sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Salmonella enterica

ncbi_submitter: PulseNet Next Generation Subtyping Methods Unit


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV268

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0823

ncbi_submitter: Broad Institute


ncbi_country: USA: California; Shell Beach

ncbi_isolation_source: oropharyngeal swab

ncbi_organism_name: Mycoplasma enhydrae

ncbi_submitter: US FDA


ncbi_country: Norway: More og Romsdal

ncbi_organism_name: Francisella noatunensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: sponge

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_strain_identifiers: KMM 349

ncbi_submitter: NODAI Culture Collection Center, Tokyo University of Agriculture


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium GW2011_GWE1_39_46


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: University Hospital of Larissa


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_organism_name: uncultured Porticoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus dysgalactiae


ncbi_organism_name: Spirosomataceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Ktedonobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Isosphaeraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-3921

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Human feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The University of Tokyo


ncbi_assembly_name: freshwater MAG --- LJ-3-4m_bin-0107

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_country: Russia: St.Petersburg

ncbi_isolation_source: small intestine

ncbi_organism_name: Bacilli bacterium VT-13-104

ncbi_submitter: Institute of Human Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__unclassified Bacilli;s__Bacilli bacterium VT-13-104


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Black Sea sulfidic water cellulose enrichment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZSM-Portici


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: This work was funded by the University Paris-Sud, France. R.A.B., L.D., and T.N. are members of the Laboratory of Excellence in Research on Medication and Innovative Therapeutics (LERMIT), supported by a grant from the French National Research Agency (ANR-10-LABX-33). This work was also supported by the “PHC Utique” program of the French Ministry of Foreign Affairs, the French Ministry of Higher Education, Research and Innovation and the Tunisian Ministry of Higher Education and Scientific Research under the CMCU project number 21G0807.


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Hydrogenophilales bacterium


ncbi_country: France: Riquewhr

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Kher Heng Leong


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B22(2017)

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: China

ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Rhizobacter sp. Root29

ncbi_submitter: Max Planck Institute for Plant Breeding Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp. Root29


ncbi_isolation_source: swine nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: lung

ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: SHANGHAI VETERINARY RESEARCH INSTITUTE CHINESE ACADEMY OF AGRICULTURAL SCIENCES


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Rhodoblastus sp.


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine sediments

ncbi_organism_name: Rhodococcus sp. I2R

ncbi_submitter: Stazione Zoologica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. I2R


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium


ncbi_isolation_source: pickle

ncbi_organism_name: Lacticaseibacillus suibinensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: China: Fangchenggang City; Guangxi Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_country: Japan

ncbi_organism_name: Mycobacterium kiyosense

ncbi_submitter: Department of Mycobacteriology, Leprosy Research Center, National Institute of Infectious Diseases - Japan


ncbi_isolation_source: human-gut

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Korea Basic Science Institute


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Atopobium sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: The Marine Mammal Center facilities in California

ncbi_isolation_source: oral cavity

ncbi_organism_name: Neisseria zalophi

ncbi_strain_identifiers: ATCC BAA-2455

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Mucinivorans sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces kanamyceticus

ncbi_submitter: KAIST


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: IN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_assembly_name: IMG-taxon 2681812804 annotated assembly

ncbi_organism_name: Pseudomonas sp. B10

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: China: Guangxi

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: China-Japan Friendship Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_assembly_name: freshwater MAG --- MJ120827A_bin-239

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Luteitalea sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Candidatus Vogelbacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vogeliibacteriota;x__unclassified Candidatus Vogelbacteria;s__Candidatus Vogelbacteria bacterium


ncbi_organism_name: Holdemania massiliensis AP2

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp2 AA86

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp2 AA86

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: GM-anode biofilm

ncbi_organism_name: Holophagaceae bacterium UBA706

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Gillisia sp.

ncbi_submitter: McGill University


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_submitter: JCVI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Haemophilus sp.


ncbi_country: USA: MA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Japan:Tottori; Kotoura; Kasechi river

ncbi_organism_name: Mesorhizobium sp. 113-3-9

ncbi_submitter: Sato Lab., Molecular Genetics and Physiology, Graduate School of Life Sciences, Tohoku University


ncbi_isolation_source: feces

ncbi_organism_name: Romboutsia ilealis


ncbi_organism_name: Corynebacterium sp. KPL1818

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: Czech Republic: Praha

ncbi_isolation_source: pressure ulcer swab

ncbi_organism_name: Morganella morganii

ncbi_submitter: Charles University in Prague


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_assembly_name: freshwater MAG --- Loclat_bin-10091

ncbi_organism_name: uncultured Microbacteriaceae bacterium


ncbi_organism_name: Corynebacterium urealyticum

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Luteococcus sanguinis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC094045

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: WRAIR-Africa


ncbi_country: Canada: Montreal; Quebec

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Washington


ncbi_country: France

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: CIRM BIA 860

ncbi_submitter: Agroscope


ncbi_country: India: Bengaluru

ncbi_isolation_source: leaves

ncbi_organism_name: Microbacterium arborescens

ncbi_submitter: National Centre for Biological Sciences


ncbi_organism_name: uncultured Actinomycetaceae bacterium


ncbi_country: USA: PA

ncbi_isolation_source: avian liver (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Australia: Perth

ncbi_isolation_source: Retail table eggs

ncbi_submitter: Murdoch University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_strain_identifiers: CNCM I 4575

ncbi_submitter: Federal University of Minas Gerais


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_organism_name: Clostridium perfringens


ncbi_country: Italy

ncbi_isolation_source: fermented sausage

ncbi_organism_name: Enterococcus faecium UC7251

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_country: Jersey

ncbi_organism_name: Staphylococcus simiae

ncbi_submitter: University of Bath


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium longum


ncbi_country: Kenya: Bungoma

ncbi_isolation_source: clay soil in riverine area

ncbi_organism_name: Xenorhabdus sp. BG5

ncbi_submitter: Goethe University Frankfurt


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Pseudomonas sp. URMO17WK12:I3

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Listeria monocytogenes


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: feed

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Clostridium beijerinckii


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8199

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris


ncbi_country: Canada: Alberta

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; enrichment culture degrading naphta

ncbi_organism_name: Mesotoga sp. SC_NapDC3

ncbi_submitter: University of Alberta


ncbi_isolation_source: Environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G.Caporale"


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Czech Republic

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: uncultured Nitrospinaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: sourdough

ncbi_organism_name: Furfurilactobacillus milii


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: University of Calgary


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_isolation_source: blood

ncbi_organism_name: Citrobacter freundii


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Human Milk

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Parma


ncbi_country: China

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Second Affiliated Hospial of Zhejiang University, School of Medicine


ncbi_organism_name: Klebsiella sp. PB9

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Egypt: El-Tawheed

ncbi_isolation_source: root system

ncbi_organism_name: Paenibacillus illinoisensis

ncbi_submitter: KAUST


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG14485

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Paenibacillus wenxiniae

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: USA: Polk County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1E6

ncbi_submitter: Oregon State University


ncbi_submitter: Makerere University


ncbi_country: China: Zhejiang

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_organism_name: Vibrio sp. NH-UV-68

ncbi_submitter: Georg-August-University Goettingen


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: Rumen uncultured genome RUG14329

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China:Sugarcane Research Institute of Yunnan Agricultural University

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: Portugal

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Streptococcus iniae 9117

ncbi_submitter: Baylor College of Medicine


ncbi_country: Italy

ncbi_isolation_source: cervico-uterine swab

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Istituto Zooprofilattico di Puglia e Basilicata

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: USA: Berkeley; CA

ncbi_isolation_source: Base of tree in front of Student Union Bldg. near Sather Gate

ncbi_organism_name: Sporosarcina sp. P21c

ncbi_submitter: University of Arizona


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: South Korea

ncbi_isolation_source: paddy soil

ncbi_organism_name: Falsiroseomonas oryzae

ncbi_submitter: Mokwon University, Korea


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Westbrook; ME

ncbi_isolation_source: conjunctivitis

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Harvard Medical School / Massachusetts Eye and Ear Infirmary


ncbi_organism_name: Klebsiella sp. GG_Kp173

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: USA: Texas

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Texas Health Science Center


ncbi_organism_name: Leptolyngbya subtilissima AS-A7

ncbi_submitter: Institute of Hydrobiology


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of Washington


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Chryseolinea sp. T2

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Latilactobacillus sp. VITA-14

ncbi_submitter: Jeju National University


ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: CENTER FOR BIOTECHNOLOGY, BIELEFELD UNIVERSITY


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Laboratório Nacional de Computação Científica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae Kp13


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7204

ncbi_submitter: University of Queensland


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Candidatus Syntrophosphaera sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;x__unclassified Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Chlamydiae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;x__environmental samples;s__uncultured Chlamydiae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Uppsala University


ncbi_country: USA

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Michigan, Ann Arbor


ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Reichenbachiella sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: pet food (BARF)

ncbi_organism_name: Vagococcus lutrae

ncbi_submitter: University of Zurich


ncbi_organism_name: Gordonibacter sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacillus cereus MC67

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus MC67


ncbi_organism_name: Segatella hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EBI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: India: North Guwahati Town; Guwahati; Assam

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: China: Yunnan

ncbi_isolation_source: tobacco leaves

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Yunnan Academy of Tobacco Agriculture Science


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_country: Namibia

ncbi_isolation_source: spider gut

ncbi_organism_name: Bergeyella sp.

ncbi_submitter: Aarhus University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_strain_identifiers: KCTC 9412T

ncbi_submitter: KRIBB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Pseudonocardiales;f__Pseudonocardiaceae;g__Amycolatopsis;s__Amycolatopsis orientalis;x__Amycolatopsis orientalis DSM 40040 = KCTC 9412


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_submitter: The First Affiliated Hospital of Nanchang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: uncultured Cohaesibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Armatimonadia bacterium


ncbi_isolate: AOP23_C1_coeur _bin _3

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: AOP23_C1_coeur _bin _3

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Bartonella sp. CM86QHHN

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Hydrogenophaga sp.


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_organism_name: Acinetobacter gyllenbergii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_isolate: SPRUCE 644

ncbi_organism_name: Candidatus Lustribacter sp.

ncbi_strain_identifiers: SPRUCE 644

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Tepidisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: water samples from two horizons (5 m and 20 m) were filtered through the net (size 27-um) and then filtered through nitrocellulose filters with a pore size of 0.22 um

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rhizobium oryzihabitans

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Greece: Epirus

ncbi_isolation_source: Food contact surface in food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-1372

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: anammox granular sludge freshwater column reactor

ncbi_submitter: KAUST


ncbi_organism_name: Neisseria elongata

ncbi_submitter: Central Clinical Laboratory, nara medical university hospital


ncbi_country: Ireland

ncbi_isolation_source: cheese

ncbi_submitter: Teagasc Food Research Centre


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Anatum

ncbi_submitter: University of California at Davis


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Canada: Axel Heiberg Island

ncbi_isolation_source: Ice-wedge polygon

ncbi_organism_name: Sphingomonas oligophenolica

ncbi_submitter: Universite Laval


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flaviramulus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Greece

ncbi_organism_name: Alkalibacterium olivapovliticus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Nagoya University


ncbi_organism_name: Butyribacter intestini


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Pacific Ocean: Equatorial Pacific

ncbi_isolate: MIT S9220

ncbi_isolation_source: non-axenic culture originally inoculated with ocean water

ncbi_organism_name: Synechococcus sp. MIT S9220

ncbi_strain_identifiers: MIT S9220

ncbi_submitter: Clark University


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: Viet Nam

ncbi_isolation_source: Mangrove plant

ncbi_organism_name: Bacillus sp. RSS_NA_20

ncbi_submitter: Mientrung Institute for Scientific Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RSS_NA_20


ncbi_assembly_name: freshwater MAG --- Umea_bin-02346

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Finland

ncbi_organism_name: Sphingomonas faeni

ncbi_strain_identifiers: MA-olki


ncbi_organism_name: Ruminococcus sp. TF08-4

ncbi_submitter: BGI


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Saratov State University of Genetics, Biotechnology and Engineering named after N.I. Vavilov


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolate: Alphaproteobacteria sp. RBC004

ncbi_isolation_source: wastewater biofilm

ncbi_strain_identifiers: Alphaproteobacteria sp. RBC004

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Duodenibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Guizhou; Jiuan

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: bacterium


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Atopostipes sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: JCVI


ncbi_isolation_source: Cell culture

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__aphid secondary symbionts;g__Candidatus Williamhamiltonella;s__Candidatus Williamhamiltonella defendens


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_country: South Africa: Pietermaritzburg

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Sinepuxent Island; MD

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_submitter: Shanghai Children's Hospital


ncbi_country: USA: Soudan Iron Mine; Minnesota

ncbi_isolation_source: brine fluids

ncbi_organism_name: Halanaerobiales bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 10231A

ncbi_submitter: University of Exeter


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Bianquea renquensis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: Bacillus subtilis subsp. natto

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. natto


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Leisingera caerulea

ncbi_submitter: Ocean University of China


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Poultry meat

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_isolation_source: feces of bat

ncbi_organism_name: Bartonella sp. HY761

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: anaerobic bioreactor

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Balneolaceae bacterium UBA1486

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__unclassified Balneolaceae;s__Balneolaceae bacterium UBA1486


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou university


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_organism_name: Alcaligenes faecalis


ncbi_assembly_name: IMG-taxon 2585428077 annotated assembly

ncbi_organism_name: Caloranaerobacter azorensis DSM 13643

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_isolation_source: intestine

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: Plant tissue

ncbi_organism_name: Pseudomonas sp. CDFA 610

ncbi_strain_identifiers: CDFA 610

ncbi_submitter: University of Florida


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital Muenster


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Anaerostipes caccae L1-92

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China: Guangzhou

ncbi_submitter: Guangzhou center for disease control and prevention


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Chryseobacterium culicis

ncbi_submitter: Zoological Institute, Kiel University


ncbi_country: Netherlands

ncbi_isolation_source: Primary rapid sand filter

ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Radboud University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Australia: St. Kilda Pier; Port Phillip Bay site C shallow

ncbi_isolation_source: Beach sand

ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Monash University


ncbi_country: China: The East China Sea

ncbi_isolation_source: oxic surface sediment

ncbi_organism_name: Algicola sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Loyola University Chicago


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Sydney


ncbi_country: Ireland

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_submitter: Yangzhou University


ncbi_country: Sri Lanka

ncbi_isolation_source: vaginal swab post-delivery

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: California; Eel River; South Fork Eel River near Phillipsville

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Oscillatoriales cyanobacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Facultad de Quimica


ncbi_isolation_source: Nose

ncbi_organism_name: Neisseria lactamica

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Rahnella inusitata

ncbi_submitter: University of Alberta


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Wenxinia marina

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Ecuador: Quito

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: KCKM 0851

ncbi_submitter: World Institute of Kimchi


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Clostridium sp. AF27-2AA

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: cheese

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_submitter: Universite Laval


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_01_FULL_54_13


ncbi_country: United Kingdom: Sutton Bonington

ncbi_isolation_source: cattle slurry

ncbi_organism_name: Campylobacter hyointestinalis subsp. hyointestinalis

ncbi_submitter: University of Nottingham


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_38_8


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Reunion

ncbi_isolation_source: citrus leaf

ncbi_organism_name: Stenotrophomonas sp. LM091

ncbi_submitter: cirad


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Escherichia coli

ncbi_submitter: IST Austria


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: feces; 3 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: bioBiome, Inc.


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: West China hospital of Sichuan university


ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Radboud University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: United Kingdom:East Birmingham

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_submitter: UMR 1137 IAME


ncbi_country: Brazil:Rio Grande do Sul

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis BTB09-086

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Neobacillus sp. KR4-4

ncbi_submitter: Kyonggi university


ncbi_country: USA: Agency Lake; Oregon

ncbi_isolation_source: freshwater lake cyanobacterial bloom; sample filtered onto 1.2 um poresize filter

ncbi_organism_name: Dolichospermum sp. UKL201

ncbi_submitter: Oregon State University


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_60 WWTPs effluent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Brazil

ncbi_isolation_source: nodules

ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: CPAC 392

ncbi_submitter: Embrapa Soja


ncbi_country: Ireland

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Agathobacter rectalis


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Massilia sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Streptomyces sp. NPDC007929

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology