ncbi_organism_name: Pseudoalteromonas distincta

ncbi_submitter: Linnaeus University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: USA: Oregon

ncbi_genome_representation: full

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: USDA-ARS


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_country: USA: Texas

ncbi_organism_name: Tsukamurella ocularis

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: SCOPE


ncbi_country: South Korea: Goyang

ncbi_isolation_source: plant

ncbi_organism_name: Mucilaginibacter pallidiroseus

ncbi_submitter: dongguk university

ncbi_type_material_designation: assembly from type material


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Cellulomonadaceae bacterium TMED98

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Australia: Brisbane

ncbi_isolation_source: bioreactor

ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Queensland university of technology


ncbi_country: Czech Republic

ncbi_isolation_source: bodily cavity

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_country: South Korea

ncbi_isolation_source: Brown algae kimchi (miyukkimchi)

ncbi_organism_name: Leuconostoc miyukkimchii

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: Gabon

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium moukalabense

ncbi_submitter: National Institute of Genetics


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA:Los Angeles

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LNCC


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf146

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CDC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: lungs

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_submitter: University of Otago


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Leptotrichiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroides hominis


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


gtdb_type_species_of_genus: t

ncbi_isolation_source: lungs of a dead parakeet

ncbi_organism_name: Basilea psittacipulmonis DSM 24701

ncbi_submitter: Genomic Research Lab, Hopital Universitaire Geneve


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_isolate: CTENA4 3PP

ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_strain_identifiers: CTENA4 3PP

ncbi_submitter: University of Vienna


ncbi_isolation_source: ground beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Shenyang

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shenyang Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Alberta

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: Antarctica: Vestfold Hills

ncbi_isolation_source: Antarctic saline pond copepod

ncbi_organism_name: Bizionia algoritergicola

ncbi_submitter: University of Tasmania


ncbi_country: USA: GA; Atlanta; Petit Science Center

ncbi_isolate: GSU

ncbi_isolation_source: fecal content originally isolated from from SFB mono-associated mice; amplified using germ-free balb/c mice

ncbi_organism_name: Candidatus Arthromitus sp. GSU

ncbi_strain_identifiers: GSU

ncbi_submitter: Georgia State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__unclassified Candidatus Neoarthromitus;s__Candidatus Arthromitus sp. GSU


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 2064

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Southern Atlantic

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aarhus University


ncbi_organism_name: Candidatus Coprenecus sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;x__Rikenellaceae incertae sedis;g__Candidatus Coprenecus;x__unclassified Candidatus Coprenecus;s__Candidatus Coprenecus sp.


ncbi_organism_name: Azospira oryzae

ncbi_submitter: Xiamen University


ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Opitutus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lacipirellula sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_country: China: Tibet; Xigaze (Shigatse)

ncbi_isolation_source: Dandelian soil

ncbi_organism_name: Bacillus sp. RJGP41

ncbi_submitter: Rainer Borriss's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RJGP41


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Portugal

ncbi_isolation_source: Mussels

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_assembly_level: Chromosome

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chiang Mai University


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Keio University, School of Medicine


ncbi_organism_name: Streptomyces graminis

ncbi_strain_identifiers: NRRL B-1570

ncbi_submitter: University of Illinois


ncbi_country: China: Jinhua

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: CDPHE SARS-CoV-2 submissions


ncbi_country: China: Zhanjiang Bay

ncbi_isolation_source: Intertidal sediment samples from Zhanjiang Bay; China

ncbi_organism_name: Mycolicibacterium phocaicum

ncbi_submitter: College of Coastal Agricultural Sciences


ncbi_country: Australia

ncbi_isolation_source: urinary tract

ncbi_submitter: Curtin University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Blastococcus sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: water

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Candidatus Cloacimonas acidaminovorans

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__Candidatus Cloacimonas acidaminovorans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__Candidatus Cloacimonas acidaminovorans


ncbi_country: USA: San Leandro; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: India

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Yonsei University


ncbi_country: Thailand: Lampang

ncbi_isolation_source: meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Public Health


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Galway


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-115

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Rhodospirillales bacterium

ncbi_strain_identifiers: new MAG-115

ncbi_submitter: Micoorganism


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_country: Australia: Brisbane

ncbi_submitter: University of Queensland


ncbi_country: Austria

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Alcanivorax jadensis

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Iran: Tehran

ncbi_isolation_source: groundwater

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Tehran


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Pedobacter sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium crudilactis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL027PA1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_isolation_source: blood

ncbi_submitter: Peking University People's Hospital


ncbi_country: Peru:Ascope; Chicama; La Libertad; AA.HH.

ncbi_organism_name: Yersinia pestis PY-56

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hunan Province

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hunan Agricultural University


ncbi_isolation_source: activated sludgeENVO:00002046

ncbi_organism_name: Marinobacter shengliensis

ncbi_submitter: Terada and Riya Laboratory, Chemical engineering, Department of Technology, Tokyo university of Agriculture and Technology


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: USA: Ithaca; New York

ncbi_organism_name: Cellulomonas humilata


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universite Laval


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: University of Pittsburgh


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Mediterraneibacter glycyrrhizinilyticus

ncbi_submitter: Veterinary Research Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: South San Francisco

ncbi_isolation_source: soil from salt pond MetaG R2A_B_D2_MG under conditions of wetland restoration

ncbi_organism_name: Candidatus Palauibacterales bacterium

ncbi_submitter: Universidad de Alicante

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;x__unclassified Candidatus Palauibacterales;s__Candidatus Palauibacterales bacterium


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: Rectal

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Rochester


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0113

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: CAU


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Lysobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_submitter: University College Cork


ncbi_organism_name: Microbacterium sp. 22179

ncbi_submitter: Yantai University


ncbi_organism_name: Chordicoccus sp.

ncbi_submitter: Wilmar International Limited


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_Q_7

ncbi_organism_name: uncultured Caulobacter sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pirellula sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Xenophilus aerolatus


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Stickney; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Northwestern University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus sp. AZ160

ncbi_submitter: Broad Institute


ncbi_organism_name: Flavobacterium suzhouense

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Kansas State University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_organism_name: Streptomyces sp. NPDC006235


ncbi_country: France: Midi-Pyrenees

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 1854

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Boston College


ncbi_organism_name: Paenibacillus sp. LX16

ncbi_submitter: Dalian Polytechnic University


ncbi_isolation_source: soil/petroleum

ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: Illinois Institute of Technology


ncbi_country: Norway

ncbi_isolation_source: Expectorate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Dysosmobacter segnis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Zurich


ncbi_assembly_name: IMG-taxon 2671180083 annotated assembly

ncbi_organism_name: Streptomyces sp. KS_16

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: GABA

ncbi_submitter: Dairy Research Institute, Bright Dairy & Food Co.


ncbi_organism_name: Escherichia coli H494

ncbi_submitter: Broad Institute


ncbi_country: Japan: Shizuoka

ncbi_strain_identifiers: ICMP 9617

ncbi_submitter: The New Zealand Institute for Plant & Food Research Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae ICMP 9617

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: Cameroon

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: Emerging Pathogens Institute, University of Florida,


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_country: Brazil

ncbi_isolation_source: Fecal Swab

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: WA

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Washington


ncbi_submitter: Children's Hospital Affiliated to Shandong University


ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: EMG


ncbi_country: Singapore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Alteromonas sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: South Korea

ncbi_isolation_source: invertebrate gut

ncbi_organism_name: Microbulbifer agarilyticus

ncbi_submitter: National Marine Biodiversity Institute of Korea


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Mixta calida

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Haemophilus parainfluenzae


ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Holdemanella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2011EL-2114


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: unknown

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Okayama university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Mahidol University


ncbi_organism_name: Corynebacterium efficiens YS-314

ncbi_submitter: NITE


ncbi_organism_name: Micromonospora sp. NPDC049081


ncbi_organism_name: Brevundimonas vesicularis

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Enterococcus sp. AZ012

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Greece: Athens

ncbi_isolation_source: stool samples

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Canada: Quebec; Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: University of Chicago


ncbi_country: United Kingdom: Great Britain

ncbi_organism_name: Clostridium novyi A str. 4552

ncbi_submitter: National Veterinary Institute (SVA)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium novyi;x__Clostridium novyi A;x__Clostridium novyi A str. 4552


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: University of Wisconsin Hospital

ncbi_organism_name: Enterococcus faecalis EnGen0400


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_country: China: Guangxi

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Veillonella infantium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Atlantic Ocean: Sargasso Sea

ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriaceae bacterium UBA5954

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG710

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: California; Modesto

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: sediment

ncbi_organism_name: Halobacillus campisalis

ncbi_submitter: The Open University


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: stream water

ncbi_organism_name: Flavobacterium gilvum

ncbi_submitter: Korea University


ncbi_country: Tanzania

ncbi_isolation_source: nasal swabs from HIV infected patient

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Bergen


ncbi_country: China: Harbin City; Heilongjiang Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Zymomonas mobilis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Dyadobacter sp. Leaf189

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: China: Guangdong

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter cancerogenus

ncbi_submitter: South China Agricultural University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Swab from L tympanic bulla

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: Ausgem


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Kvitko Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Gemmatimonas phototrophica

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae UHKPC45

ncbi_submitter: JCVI


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_country: Peru

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_country: China: the China South Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Thalassospira marina

ncbi_submitter: Third Institute of Oceanography,State Oceanic Administration


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Aeromonas taiwanensis

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: guangdong ocean university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: University of Sheffield


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: University of Maryland Baltimore


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Neorhizobium galegae bv. officinalis

ncbi_strain_identifiers: HAMBI 1189

ncbi_submitter: UH


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bologna


ncbi_country: South Korea: Seoul

ncbi_submitter: Seoul Metropolitan Government Research Institute of Public Health and Environment


ncbi_country: Austria

ncbi_isolation_source: eye

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China

ncbi_isolation_source: gut microbiota

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Dorea longicatena


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Ireland: Dublin

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Maynooth University


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Oxalobacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Lautropia sp.

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: Soil; orchid house; San Francisco; USA; 1971

ncbi_organism_name: Allocoleopsis franciscana PCC 7113

ncbi_submitter: JGI


ncbi_country: South Korea

ncbi_isolation_source: Liver and spleen

ncbi_organism_name: Escherichia coli O1:K1:H7

ncbi_strain_identifiers: APEC E18006

ncbi_submitter: Seoul National University


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark

ncbi_isolation_source: In vitro substrate

ncbi_organism_name: Pseudoalteromonas luteoviolacea

ncbi_submitter: MaCuMBA Project


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: University of Florida


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Queensland


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Rhodococcus coprophilus NBRC 100603

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Sneathiella sp.

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- VK2_bin-0924

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriia bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_organism_name: Clostridium sp. AM09-51

ncbi_submitter: BGI


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Menzies School of Health Research


ncbi_organism_name: Vibrio nigripulchritudo SFn135

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: sausage

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Zurich


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S14

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: CAU


ncbi_isolation_source: artisanal wheat sourdough

ncbi_organism_name: Levilactobacillus zymae

ncbi_submitter: Korea University


ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Egypt

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environmental surface

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Norway

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_submitter: JPIAMR ARMIS


ncbi_submitter: South China Agricultural University


ncbi_country: China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: pig farm

ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Norway: west coast of Svalbard

ncbi_organism_name: Maridesulfovibrio frigidus DSM 17176

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: KS

ncbi_isolation_source: chicken taco

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_assembly_name: Bcampestris

ncbi_organism_name: Brochothrix campestris FSL F6-1037

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Brochothrix;s__Brochothrix campestris;x__Brochothrix campestris FSL F6-1037


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Agelastica alni


ncbi_organism_name: Companilactobacillus crustorum

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0122

ncbi_submitter: Broad Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Leclercia adecarboxylata


ncbi_assembly_name: Rumen uncultured genome RUG13501

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces pilosus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Candidatus Lumbricidiphila sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Micromonospora sp. NPDC000089

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hefei

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: the First Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Guinea-Bissau

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Lebanon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: lebanese american university


ncbi_country: USA: MA

ncbi_isolation_source: throat


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_submitter: US Food and Drug Administration


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Pharmacy Mahidol University


ncbi_isolation_source: In-house environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Antarctica

ncbi_isolation_source: Snow sample

ncbi_organism_name: Arthrobacter sp. SO5

ncbi_submitter: University Malaysia Sabah


ncbi_isolation_source: Soft tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Salar of Ascotan

ncbi_isolation_source: Salted water

ncbi_organism_name: Halomonas gemina

ncbi_submitter: Helmholtz Zentrum Dresden-Rossendorf


ncbi_submitter: Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus FVRH6040

ncbi_submitter: Broad Institute


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_organism_name: Kingella potus DSM 18304

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Neisseriales;f__Neisseriaceae;g__Kingella;s__Kingella potus;x__Kingella potus DSM 18304


ncbi_organism_name: Parvicellaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Alcaligenaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Quanzhou Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: KI_Gwil_MAG_1.0 Marinobacter salarius RCC3390_10c

ncbi_organism_name: Marinobacter salarius

ncbi_submitter: Nomorfilm


ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_organism_name: Bacillus cereus group sp. MYBK181-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK181-2


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Prochlorothrix sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Utrecht University


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of California Davis


ncbi_country: USA: Florida

ncbi_isolation_source: blue hole oxygen minimum zone seawater 95 m-106 m

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Emergencia sp.

ncbi_submitter: AAFC


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Anhui Medical University; Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Department of Pharmacy, Shaoxing Hospital of Traditional Chinese Medicine Affiliated to Zhejiang Chi


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Kunming

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin swab

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Streptococcus agalactiae MRI Z1-039

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Maritimibacter sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: freshwater MAG --- Loc080925-5m_bin-0679

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: China: Weihai City; Shandong Province

ncbi_organism_name: Spiribacter salilacus

ncbi_submitter: shandong university


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: BGI


ncbi_country: Nigeria

ncbi_isolation_source: rectal swab

ncbi_submitter: Cardiff University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: USA

ncbi_isolation_source: Wound; Surgical Rt Leg

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_name: Rumen uncultured genome RUG13658

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC057748

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG13333

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: University of Chicago


ncbi_country: Canada: Montreal

ncbi_isolation_source: Hospital sink

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: bacterium

ncbi_submitter: University of Montreal


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NBC_00708

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Tsinghua University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_submitter: Justus Liebig University Giessen


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Komagataeibacter europaeus 5P3

ncbi_submitter: Vital-IT - Swiss Institute of Bioinformatics


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory, Melbourne


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Arcobacter sp.

ncbi_submitter: University of California, Berkeley


ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Pakistan

ncbi_isolation_source: meat

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Fujian

ncbi_isolation_source: root

ncbi_organism_name: Bacillus sp. FJAT-29790

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-29790


ncbi_organism_name: Olsenella uli DSM 7084

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Olsenella;s__Olsenella uli;x__Olsenella uli DSM 7084


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Institute of Water Research


ncbi_organism_name: Desulfurivibrionaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: China: Guangzhou

ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: The Second Clinical College, Guangzhou University of Chinese Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Brazil: Dourados

ncbi_organism_name: Cyanobacteria bacterium OH_PDB_230

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium OH_PDB_230


ncbi_organism_name: Pseudomonas sp. W5-01

ncbi_submitter: Institut de recherche Labiris


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense genomovar finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Germany

ncbi_isolation_source: brewery environment

ncbi_organism_name: Pediococcus damnosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: India: Mahatma Gandhi Hospital - Ward 1

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0031

ncbi_submitter: Broad Institute


ncbi_organism_name: Hamadaea sp. NPDC050747

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: University of Chicago


ncbi_organism_name: Veillonella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: The University of Queensland


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Prevotella sp.


ncbi_country: USA: Washington

ncbi_isolation_source: manure from farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Streptococcus agalactiae GB00947

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: China: Hubei; Zhongxiang

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: ZhX

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Cote d Ivoire: Abidjan

ncbi_isolation_source: University Hospital of Abidjan-Cocody

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pasteur Institut of Ivory Coast


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1018

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Streptomyces lactacystinicus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudomonas entomophila

ncbi_submitter: EMG


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Thermus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Streptomyces griseofuscus


ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Rhizomicrobium sp.


ncbi_organism_name: Agrobacterium rosae

ncbi_submitter: University of British Columbia


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin S2.59

ncbi_isolation_source: groundwater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_strain_identifiers: bin S2.59

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: inserm


ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: University of Camerino


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Michigan State University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Salmonella sp. LSP 21/00

ncbi_submitter: University of Oviedo


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_assembly_name: freshwater MAG --- VK1_bin-0760

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_country: Ethiopia: Oromiya; Arisi; Xiyo

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: sponge

ncbi_organism_name: Streptomyces sp. HNS054

ncbi_submitter: Xiamen University


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Lutibacter sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp7 AA11

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp7 AA11

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Australia: Perth

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Gordonia sp. AC31

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. AC31


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chungnam national university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Rheinheimera sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: SurvCARE


ncbi_organism_name: Prevotella bivia

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: IZLSLER


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Taizhou

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Pedobacter sp. JY14-1

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: caecum of adult hen

ncbi_organism_name: Succinatimonas hippei

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: VA

ncbi_isolation_source: Stomach from patient in United Kingdom

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Universidade Federal Rural de Pernambuco


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Klebsiella sp. 20IR1034

ncbi_submitter: Children's Hospital affiliated to Zhejiang University School of Medicine


ncbi_submitter: Universiteit Gent


ncbi_country: Japan: Okayama

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Rhizobium straminoryzae

ncbi_submitter: RIKEN


ncbi_country: USA: California

ncbi_organism_name: Rhodococcoides kroppenstedtii

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Pukyong National University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: USA: Massachusetts

ncbi_organism_name: Kitasatospora sp. MAP12-44


ncbi_organism_name: Salinispora arenicola CNS673


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Alicyclobacillus sp.

ncbi_submitter: University of British Columbia


ncbi_country: Thailand

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae


ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: USA: MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio metoecus

ncbi_submitter: University of Alberta


ncbi_submitter: UMCU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus S1805


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Treponema putidum

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Soil

ncbi_organism_name: Mycolicibacterium thermoresistibile


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M049S2

ncbi_submitter: Universite de Montreal


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Washington

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. wa1063

ncbi_submitter: Cornell University


ncbi_country: France: Poitou-Charentes

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12041

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V30_P3S12P165

ncbi_submitter: Instituto de ecologia


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_country: China: Huibei

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: Hungary: Kecskemt

ncbi_isolation_source: Anaerobic sludge from Kecskemt Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Lentzea alba

ncbi_submitter: Hebei university


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Gemmatimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Changchun Veterinary Research Institute,


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 107

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolate: metabat2_XCR1_HOM_7868_bwa.130 MAG

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_strain_identifiers: metabat2_XCR1_HOM_7868_bwa.130 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Streptomyces sp. NPDC087263

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Marques de Valdecilla


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: Oral

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_country: China: Changde

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Streptomyces cynarae

ncbi_strain_identifiers: HUAS 13-4

ncbi_submitter: Hunan University of Arts and Science


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Oklahoma State University


ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: human feces metagenome


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Kandleria sp.

ncbi_submitter: EMBL-EBI


ncbi_country: China: Guangxi

ncbi_isolation_source: citrus infected tissue

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Citrus Research and Education center, Univerisity of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: India: Chennai

ncbi_submitter: Karolinska Insitutet


ncbi_organism_name: Roseibium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Germany

ncbi_isolation_source: Burn

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Proteus vulgaris

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Back swab

ncbi_organism_name: Dermabacter vaginalis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M55902

ncbi_submitter: Broad Institute


ncbi_organism_name: Aeromonas sp. Lyrl_2

ncbi_submitter: Banaras Hindu University


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_submitter: Quanzhou Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_isolation_source: marine metagenome


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Kvitko Lab


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_country: China

ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_submitter: Hainan University


ncbi_isolation_source: dairy cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: CSIRO


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D9_bin-1187

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Brazil:Rio Grande do Sul

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: uncultured Desulfarculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. IFREMER_LSEM_CL2127

ncbi_submitter: IFREMER


ncbi_country: South Africa:Stellenbosch

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: Germany: Wadden Sea; Neuharlingersiel

ncbi_isolation_source: barnacle at wood pile-on

ncbi_organism_name: Phaeobacter porticola

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Chicago


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sengenics sdn bhd


ncbi_country: China: Jiangsu

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Fusobacterium polymorphum

ncbi_strain_identifiers: KCOM 1232 (;ChDC F37)

ncbi_submitter: Chosun University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Haiti: St. Marc Hospital; Artibonite

ncbi_isolation_source: Stool; Clinical

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: planarians Schmidtea mediterranea

ncbi_organism_name: Herminiimonas sp. Marseille-P9896

ncbi_submitter: CEBITEC


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Brazil

ncbi_isolation_source: Biological material

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Environmental Science and Research


ncbi_country: USA: WA

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: University of Washington


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriaceae bacterium UBA2547

ncbi_submitter: University of Queensland


ncbi_organism_name: Empedobacter falsenii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Proteus sp. G2663

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G2663


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Selenomonas ruminantium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Serratia marcescens

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Eubacterium sp.


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Proteiniphilum sp. UBA5310


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2596583656 annotated assembly

ncbi_organism_name: Mesorhizobium qingshengii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: Pseudomonas aeruginosa PAK

ncbi_strain_identifiers: PAK


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Neuroinfections Emerging in the Americas Study


ncbi_country: USA: Michigan

ncbi_organism_name: Arthrobacter sp. PvP023

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: China: Lasa

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Jiangellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Salmonella sp. NW724

ncbi_submitter: Sichuan University


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: North South University


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Kaistella sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;x__Chryseobacterium group;g__Kaistella;x__environmental samples;s__uncultured Kaistella sp.


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2024EL-00786


ncbi_organism_name: uncultured Polyangiaceae bacterium


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Gardnerella sp. KA00127

ncbi_submitter: Fred Hutch


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Acinetobacter gandensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_assembly_name: Rumen uncultured genome RUG13102

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine