ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: sheep

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zoonosis Science Center


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Salmonella sp. ZJLS19Sal_0414

ncbi_submitter: Zhejiang university


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_country: Denmark: Esbjerg W

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: environmental

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: US Food and Drug Administration


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: fecal sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: South Africa: North West; Free State; Northern Cape and Gauteng provinces

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas vasicola pv. zeae

ncbi_submitter: North-West University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus parasanguinis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Tenericutes bacterium ADurb.Bin087

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__unclassified Mycoplasmatota;s__Tenericutes bacterium ADurb.Bin087


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_isolation_source: The Red Sea

ncbi_organism_name: Sulfitobacter sp. Ks43

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Michigan; Powell Township; Upper Pine Lake

ncbi_isolation_source: water

ncbi_organism_name: Aeromonas sp. HMWF014


ncbi_organism_name: Clostridium sp. AF15-31


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_country: Russia: Izhevsk

ncbi_isolation_source: patient s blood plasma

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Central Research Institute for Epidemiology


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: J. Craig Venter Institute


ncbi_assembly_name: Genome assembly of Mycobacterium bovis MB1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Staphylococcus sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: Tattoo ink

ncbi_organism_name: Paenibacillus lautus

ncbi_submitter: National Center for Toxicological Research


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: bacterium M3-1

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Hygromycin B antibiotic bottle

ncbi_organism_name: Pseudomonas hygromyciniae

ncbi_refseq_category: reference genome

ncbi_submitter: Northwestern University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridium sp. D43t1_170807_D5

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Capnocytophaga granulosa

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: South Korea

ncbi_organism_name: Escherichia coli

ncbi_submitter: Korea Zoonosis Research Institute


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Germany: Magdeburg

ncbi_isolation_source: gastric fundus Patient381

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium UBA2177


ncbi_organism_name: Pseudomonas putida

ncbi_strain_identifiers: ASAD

ncbi_submitter: Olin College


ncbi_assembly_name: HGAP assembly of Acinetobacter baumannii ORAB01

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Imperial College London


ncbi_country: Pakistan

ncbi_strain_identifiers: zumi 6

ncbi_submitter: Quaid-i-Azam University


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: respiratory

ncbi_organism_name: Neisseria sp. HMSC06F02

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Hong Kong

ncbi_organism_name: Christiangramia portivictoriae DSM 23547

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_isolate: Prospectively collected (P)

ncbi_isolation_source: Blood

ncbi_strain_identifiers: Prospectively collected (P)

ncbi_submitter: Erasmus University Medical Center


ncbi_country: China: Hubei

ncbi_isolation_source: urine

ncbi_submitter: Wuhan CDC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belgium: Ghent

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ANIWHA


ncbi_submitter: Sichuan University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFCSPLOWO2_01_FULL_47_25


ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: Canada: Manitoba

ncbi_isolation_source: CF throat

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: National Microbiology Laboratory


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: St. Charles; Illinois

ncbi_isolation_source: drainage pipe

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: New York Medical College


ncbi_country: USA: South Carolina

ncbi_isolation_source: lettuce field

ncbi_organism_name: Xanthomonas axonopodis pv. vitians

ncbi_strain_identifiers: CFBP 2538

ncbi_submitter: University Claude Bernard Lyon 1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas axonopodis;x__Xanthomonas axonopodis subcluster 9.5;x__Xanthomonas axonopodis pv. vitians

ncbi_type_material_designation: assembly from pathotype material


ncbi_assembly_name: Streptomyces specialis

ncbi_organism_name: Streptomyces specialis

ncbi_submitter: URMITE


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Costa Rica

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Costa Rica


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_16


ncbi_country: France: Rennes

ncbi_isolation_source: CIRM-BIA Culture Collection

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: University of Copenhagen


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Altererythrobacter sp. 66-12


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: California

ncbi_isolation_source: feces

ncbi_submitter: USDA/ARS/WRRC/PSM


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium GW2011_GWD1_37_17


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Viet Nam

ncbi_isolation_source: frog food

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM 19447


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_organism_name: Mycobacterium sp. SP-6446

ncbi_submitter: JCVI


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE165

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_organism_name: Ensifer sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Tours

ncbi_isolation_source: carriage

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: New Zealand: Christchurch

ncbi_isolation_source: returned activated sewage sludge

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Institute of Environmental Science Ltd


ncbi_assembly_level: Chromosome

ncbi_country: Ireland

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas umsongensis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Limosilactobacillus oris

ncbi_submitter: addis ababa university


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Sphingobium soli

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: lake sediment

ncbi_organism_name: Polynucleobacter sp. TUM22923

ncbi_submitter: Toho University


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Neisseria sp. oral taxon 014 str. F0314

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Neisseriales;f__Neisseriaceae;g__Neisseria;x__unclassified Neisseria;s__Neisseria sp. oral taxon 014;x__Neisseria sp. oral taxon 014 str. F0314


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Bacillus tequilensis KCTC 13622

ncbi_submitter: KRIBB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus tequilensis;x__Bacillus tequilensis KCTC 13622


ncbi_isolate: JBYFY

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: USA: Memphis; Nebraska

ncbi_organism_name: Paenibacillus sp. 1182

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Blacksberg; Virginia

ncbi_isolation_source: human oral cavity

ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: The Forsyth Institute


ncbi_organism_name: Hydrogenibacillus schlegelii

ncbi_submitter: Wageningen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;f__Bacillales Family X. Incertae Sedis;g__Hydrogenibacillus;s__Hydrogenibacillus schlegelii


ncbi_country: China

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Roseiarcus sp.


ncbi_organism_name: Streptomyces sp. NPDC090088

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- A2_bin-0871

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Amycolatopsis albidoflavus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Laos

ncbi_isolation_source: River

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Bern


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: ANIWHA


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Portugal: Torrao

ncbi_isolation_source: piggery manure

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO/REQUIMTE. Faculdade de Farmacia. Universidade do Porto.


ncbi_isolation_source: Rainwater

ncbi_organism_name: Lysinibacillus parviboronicapiens

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Paenibacillus sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_assembly_name: IMG-taxon 2671180076 annotated assembly

ncbi_organism_name: Nitrosospira multiformis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Eubacteriales Family XIII. Incertae Sedis bacterium


ncbi_country: France: Bretagne

ncbi_isolation_source: Poultry

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: NABI 238

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Minnesota


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: China: Jiangsu

ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Silver Spring

ncbi_organism_name: Coprococcus eutactus ATCC 27759

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Clemson University


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_organism_name: Treponema sp.


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_submitter: EMG


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_isolation_source: liver

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: coastal sediment

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: France: Centre

ncbi_isolation_source: leaf spots on Actinidia deliciosa hayward

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. actinidifoliorum


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV155

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Stanford University


ncbi_assembly_name: Rumen uncultured genome RUG13669

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Paris Saclay University


gtdb_type_species_of_genus: t

ncbi_organism_name: Marichromatium gracile

ncbi_strain_identifiers: DSM 203

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: caecum

ncbi_organism_name: Lacrimispora saccharolytica

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Streptococcus pyogenes MGAS9429

ncbi_submitter: Lab of Human Bacterial Pathogenesis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes;x__Streptococcus pyogenes serotype M12;x__Streptococcus pyogenes MGAS9429


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus avium

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Faecalitalea sp. UBA4241

ncbi_submitter: University of Queensland


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Germany: Goettingen

ncbi_isolation_source: greenhouse basin

ncbi_organism_name: Rubrivivax gelatinosus

ncbi_strain_identifiers: DSM 149

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus glycinifermentans

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Streptomyces sp. NPDC050636


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Afipia sp. Root123D2

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA: California;Yosemite National Park

ncbi_organism_name: Saccharibacter sp. EH611

ncbi_submitter: Indiana University


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: California

ncbi_isolation_source: marine sediment

ncbi_organism_name: Thioclava sp. JE_KL1

ncbi_submitter: UC Davis


ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Hohenheim


ncbi_country: Canada: Vancouver

ncbi_isolation_source: activated sludge

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: The University of British Columbia


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 6497

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: University of Waterloo


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Brucella sp. NBRC 113783

ncbi_submitter: Guangdong Provincial Hospital of Traditional Chinese Medicine


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Aquabacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__environmental samples;s__uncultured Aquabacterium sp.


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Brevundimonas aurantiaca

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paraherbaspirillum soli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterococcus sp. AZ072

ncbi_submitter: Broad Institute


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Poland: Warsaw; Clinical Hospital

ncbi_isolation_source: infected surgical wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA ermB SO574

ncbi_submitter: Medical University of Warsaw


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of Chicago


ncbi_organism_name: Syntrophomonadaceae bacterium


ncbi_country: India

ncbi_isolation_source: waste water with 7% salt

ncbi_submitter: National Environmental Engineering Research Institute-CSIR


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: USA: Sippewissett Marsh; Cape Cod; MA

ncbi_isolation_source: pink berry consortia of the Sippewissett salt marsh

ncbi_organism_name: Thiohalocapsa sp. PB-PSB1

ncbi_submitter: UC Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_country: Republic of the Congo

ncbi_isolation_source: oil field

ncbi_organism_name: Sediminispirochaeta smaragdinae DSM 11293

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: human blood of bacteremia patient

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_country: Australia

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Murdoch University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 23010;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: School of Agricultural and Veterinary Sciences, Sao Paulo State University (Unesp)


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: France: Besancon

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: China: Shandong

ncbi_isolation_source: river water

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shandong University


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0015

ncbi_submitter: Broad Institute


ncbi_assembly_name: S.aureus 333

ncbi_isolation_source: corneal ulcer from a 42 year-old male

ncbi_organism_name: Staphylococcus aureus subsp. aureus 333

ncbi_submitter: National Center for Biological Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 333


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_50_11


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Serratia marcescens

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacterales bacterium


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_assembly_name: freshwater MAG --- MJ130820B_bin-0804

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: Christian Medical College


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 115 (4-4465997)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 115 (4-4465997)


ncbi_organism_name: Luteibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Queensland


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Clostridium acetobutylicum

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Ktedonobacterales bacterium


ncbi_country: Ukraine: Lvov

ncbi_isolation_source: crude oil-contaminated soil

ncbi_organism_name: Gordonia alkanivorans

ncbi_submitter: IBPM RAS


ncbi_country: China: Hangzhou

ncbi_isolation_source: stomach

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: USA: Rappahanock River; VA

ncbi_isolation_source: spleen

ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Norfolk State University


ncbi_isolation_source: human gut

ncbi_organism_name: Candidatus Apopatosoma intestinale

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Apopatosoma;s__Candidatus Apopatosoma intestinale


ncbi_country: Italy: Florence

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florence


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: India: Chora Island

ncbi_isolation_source: marine sediment

ncbi_organism_name: Fictibacillus enclensis

ncbi_submitter: CSIR-National Chemical Laboratory


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Corynebacterium sp. UMB9976

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: kidney

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Variovorax sp.

ncbi_submitter: EPFL


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0178

ncbi_submitter: Broad Institute


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Heidelberg University Hospital


ncbi_submitter: The University of Texas at San Antonio


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_country: Brazil

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Guangdong

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Erasmus University Medical Center


ncbi_isolate: Acidobacteria sp. RBC099

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_strain_identifiers: Acidobacteria sp. RBC099

ncbi_submitter: UNIVERSITY OF WATERLOO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Croceimicrobium sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: PARUL UNIVERSITY


ncbi_organism_name: Motiliproteus sp.


ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: Monash University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Pennsylvania State University


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: USA: Tucson; Arizona

ncbi_isolation_source: air

ncbi_organism_name: Buchnera aphidicola (Macrosiphum euphorbiae)

ncbi_strain_identifiers: Meu

ncbi_submitter: University of Hawaii


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Kiribati: Kiritimati; Lake 21

ncbi_isolation_source: hypersaline microbial mat

ncbi_organism_name: Kiritimatiella glycovorans

ncbi_submitter: Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- MJ111018A_bin-851

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_submitter: Yangzhou University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Clostridium luticellarii


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3088-1

ncbi_submitter: Broad Institute


ncbi_organism_name: Xanthocytophaga flava

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Viet Nam: Ha Noi

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_country: France

ncbi_isolation_source: lactic starter (for yoghurt making)

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 1117

ncbi_submitter: Brigham Young University


ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: CDC


ncbi_country: USA: Washington; DC

ncbi_isolation_source: tracheal mucosa

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Brevibacillus halotolerans

ncbi_submitter: China Center of Industrial Culture Collection


ncbi_organism_name: Streptomyces sp. NPDC032198

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JPIAMR ARMIS


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Acinetobacter baumannii 26016_7

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China

ncbi_isolation_source: cecum

ncbi_submitter: Nanjing agricultural university


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Haliea sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Cystic fibrosis lung

ncbi_organism_name: Burkholderia singularis

ncbi_submitter: UZH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Varibaculum sp.


ncbi_assembly_name: Rumen uncultured genome RUG11931

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: IMG-taxon 2698536714 annotated assembly

ncbi_organism_name: Algoriphagus halophilus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Candidatus Avelusimicrobium stercoris

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Pakistan

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: FDA


ncbi_organism_name: Psychrobacter sp. 1Y11

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: cheese Grana Padano

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Halieaceae bacterium

ncbi_submitter: EMG


ncbi_country: India

ncbi_organism_name: Pantoea anthophila

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: uncultured Marinobacter sp.


ncbi_submitter: IMPERIAL COLLEGE LONDON

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B078;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Kandleria vitulina


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H72115

ncbi_submitter: Broad Institute


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Brevundimonas faecalis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Rhizobium etli

ncbi_strain_identifiers: SEMIA 4004


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: lake water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: acrop

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Staphylococcus aureus F23613


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Gaiellaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Papua New Guinea

ncbi_isolation_source: Deep Sea Water

ncbi_organism_name: Corynebacterium hadale

ncbi_submitter: Shanghai Ocean University


ncbi_assembly_name: freshwater MAG --- KR_bin-0707

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of California at Davis


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Mexico

ncbi_organism_name: Escherichia coli

ncbi_submitter: Beijing Institute of Genomics, CAS


ncbi_country: Nepal: Gokarna

ncbi_isolation_source: Wild animal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_assembly_name: Willow Endophyte RIT305

ncbi_country: USA: New York; Geneva

ncbi_isolation_source: Willow (Salix sp.)

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Monash University Malaysia


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of Washington


ncbi_isolation_source: forest soil

ncbi_organism_name: Frankiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: China: Dashan Tin-Zinc Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: Linnaeus University


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_isolate: SPRUCE 346

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 346

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: MAScIR


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_country: Taiwan: Hospital

ncbi_isolation_source: plasma

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Chung Cheng University


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universidade Federal de Pelotas


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Paenibacillus sp. 32352

ncbi_submitter: University of Georgia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Hangzhou Medical University


ncbi_isolate: metabat2_pooled_metaflye.325 MAG

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_strain_identifiers: metabat2_pooled_metaflye.325 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Viet Nam

ncbi_isolation_source: squid

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM 19470


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mannheimia haemolytica

ncbi_strain_identifiers: 2512MH;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Milk

ncbi_organism_name: Bacillus cereus ATCC 4342

ncbi_strain_identifiers: ATCC 4342

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus ATCC 4342


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Enterococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Spain: off the coast of Alicante

ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Dairy starter

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Radboudumc


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium UBA6850

ncbi_submitter: University of Queensland


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: abscess facial

ncbi_organism_name: Streptococcus sp. HMSC067A03

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Commercial cheese starter culture

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: skin

ncbi_organism_name: Kocuria sp. APC 4018

ncbi_submitter: University College Cork

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Kocuria;x__unclassified Kocuria;s__Kocuria sp. APC 4018


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Acidovorax sp. JHL-3

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Palacky University Olomouc


ncbi_country: France

ncbi_isolation_source: urine

ncbi_submitter: Rennes Hospital


ncbi_submitter: University hospital Hamburg-Eppendorf


ncbi_country: Chile

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium novyi NT

ncbi_strain_identifiers: NT

ncbi_submitter: Johns Hopkins Kimmel Comprehensive Cancer Center


ncbi_submitter: North-West University


ncbi_country: China

ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Hydrogenimonas thermophila

ncbi_submitter: Third Institute Of Oceanography,Ministry of Natural Resources


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: Ireland

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Imperial College London


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Canada: Quebec

ncbi_isolation_source: Slaughterhouse-environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Tamazight Cherifi's shared submissions


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: Changchun

ncbi_isolation_source: rough type phage-resistant strain derived from Klebsiella pneumoniae K7

ncbi_submitter: Jilin University


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_assembly_name: IMG-taxon 2693429902 annotated assembly

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Formosa sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Sichuan

ncbi_submitter: China Agricultural University


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Rutgers University


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: China: Shanghai

ncbi_isolation_source: throat

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: the Chinese Academy of Agricultural Sciences (CAAS)


ncbi_organism_name: Arthrobacter agilis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: China: Xiangtan City; Hunan Province

ncbi_isolation_source: manganese mine

ncbi_organism_name: Runella aurantiaca

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Thailand: Roi Et Province

ncbi_isolation_source: surface-sterilized leaves

ncbi_organism_name: Quadrisphaera sp. RL12-1S

ncbi_submitter: Dongguk university


ncbi_organism_name: Paraprevotella clara

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter wuhouensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Senegal

ncbi_isolation_source: breast milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IHU Genomes


ncbi_assembly_name: freshwater MAG --- LJ_bin-1123

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Sorangium sp. So ce1504

ncbi_strain_identifiers: So ce1504

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce1504


ncbi_organism_name: Rothia sp. P5766

ncbi_submitter: Masaryk University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. P5766


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Roseovarius ramblicola

ncbi_strain_identifiers: CECT 9424


ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Trichococcus flocculiformis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium


ncbi_organism_name: Bremerella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gracilimonas halophila

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Mucilaginibacter sp. AW1-7

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Flavobacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_organism_name: Halioglobus sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica


ncbi_country: Myanmar

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: SC


ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: EMG


ncbi_country: China: Kunlun Pass Basin

ncbi_isolation_source: soil

ncbi_organism_name: Sandarakinorhabdus fusca

ncbi_submitter: Institute of Microbiology


ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Thiocyanate bioreactor

ncbi_organism_name: Rhodanobacter sp. SCN 66-43

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Changzhou;Jiangsu

ncbi_isolation_source: Aerobic activated sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: South China University of Technology


ncbi_organism_name: Lautropia mirabilis ATCC 51599

ncbi_submitter: Kunming Medical University


ncbi_country: China: Jiangsu

ncbi_isolation_source: activated sludge

ncbi_organism_name: Novosphingobium sp. ES2-1

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: MD

ncbi_isolation_source: wound

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Actinobacteria bacterium UBA3009

ncbi_submitter: University of Queensland


ncbi_isolation_source: Chicken meat

ncbi_submitter: Universiti Putra Malaysia


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;s__Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_01_FULL_44_110


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: Italy

ncbi_isolation_source: orofaryngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Puttaparthi; Urology Ward

ncbi_isolation_source: Per urether catheter urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sri Sathya Sai Institute of Higher Learning


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium sp. 3519A

ncbi_submitter: URMITE


ncbi_country: Argentina: Tandil

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_country: Brazil: Belem

ncbi_submitter: LNCC


ncbi_country: Turkey

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Black Sea Agricultural Research Institute


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Greece

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: The First Hospital of Jilin University


ncbi_country: Sweden: Orebro

ncbi_isolation_source: orthopedic joint implant

ncbi_organism_name: Finegoldia magna

ncbi_submitter: Aarhus University


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.399 MAG

ncbi_isolate: bin.399 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_strain_identifiers: bin.399 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_country: Spain

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Paenibacillus assamensis DSM 18201

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bifidobacterium bifidum


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Elusimicrobiales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Ohio

ncbi_submitter: JCVI


ncbi_organism_name: Pseudomonas sp. Env-94

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Minnesota

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_assembly_name: freshwater MAG --- MJ120531A_bin-083

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0080

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Pennsylvania Magee Womens Hospital

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Pseudomonas kuykendallii


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Segatella;s__Segatella baroniae;x__Segatella baroniae DSM 16972 = JCM 13447


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Streptomyces sp. NPDC057298

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_organism_name: Delftia acidovorans


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: cutaneous leg ulcer

ncbi_organism_name: [Haemophilus] ducreyi

ncbi_submitter: Indiana University School of Medicine


ncbi_isolation_source: caecum

ncbi_organism_name: Bacteroides gallinaceum

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_country: Japan

ncbi_isolation_source: drain tip

ncbi_submitter: Toho university


ncbi_country: Russia: Moscow

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_strain_identifiers: CECT 4487

ncbi_submitter: UCONNMISEQ


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: KLDS 74

ncbi_submitter: Northeast Agricultural University


ncbi_country: Russia: Siberia

ncbi_isolation_source: pulp of a gold-containing sulfide concentrate

ncbi_organism_name: Sulfobacillus thermotolerans

ncbi_submitter: Federal Research and Clinical Center of Physical-Chemical Medicine of FMBA of Russia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus thermotolerans


ncbi_organism_name: Synechococcus sp. H60.4

ncbi_submitter: University of Montana


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_country: Lebanon

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American University


ncbi_isolation_source: pig slaughter line carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: uncultured Sangeribacter sp.


ncbi_country: USA: California

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: USDA


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Turicibacter faecis

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Azospirillum formosense

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Mengzi; Yunnan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Alicyclobacillus sp. ALC3

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: ICMR - National Institute for Research in Bacterial Infections

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Phragmitibacter sp.

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_submitter: McGill University


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Syntrophaceticus sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Thermoanaerobacterales Family III. Incertae Sedis;g__Syntrophaceticus;x__environmental samples;s__uncultured Syntrophaceticus sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_submitter: Weifang People's Hospital


ncbi_country: USA: Alabama

ncbi_isolation_source: plaque

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: Candidatus Sabulitectum sp.

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;g__Candidatus Sabulitectum;x__unclassified Candidatus Sabulitectum;s__Candidatus Sabulitectum sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: WA

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Tractidigestivibacter scatoligenes

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Ralstonia pseudosolanacearum


ncbi_country: Viet Nam: Tam Dao National Park

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Eubacteriales Family XIII. Incertae Sedis bacterium


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: mBioClim


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 22

ncbi_submitter: USDA-ARS


ncbi_country: Argentina

ncbi_isolation_source: Septic arthritis

ncbi_organism_name: Staphylococcus aureus DAR3170

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Porticoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: ANSES


ncbi_country: Jordan

ncbi_isolation_source: Chamomile

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Cepheid


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Cinvestav


ncbi_country: Canada: BC

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A4

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Hong Kong

ncbi_isolation_source: environmental swab (scale for baby)

ncbi_submitter: The University of Hong Kong