ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_submitter: Center for Microbial Communities


gtdb_representative: f

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Hainan

ncbi_isolation_source: meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Sutterella wadsworthensis


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Pseudorhodoplanes sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Weissella confusa

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_organism_name: Streptomyces sp. NPDC006692

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_strain_identifiers: HSD

ncbi_submitter: Huashan Hospital Affiliated to Fudan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_assembly_name: Pseudomonas fluorescens GcM5-1A

ncbi_country: China: Nanjing

ncbi_isolation_source: from the surface coat protein of pine wood nematode

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Nanjing Forestry University


ncbi_organism_name: Pseudomonas trivialis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 38

ncbi_submitter: USDA-ARS


ncbi_organism_name: Ascidiaceihabitans sp.

ncbi_submitter: University of Southern California


ncbi_country: Japan: Chiba

ncbi_isolation_source: soil

ncbi_organism_name: Aneurinibacillus migulanus

ncbi_refseq_category: reference genome

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_type_material_designation: assembly from type material


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with hylon

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Chloroflexota bacterium


ncbi_country: Indian Ocean: northwest Indian Ocean; Daxi hydrothermal vent

ncbi_isolation_source: hydrothermal vent sulfide chimney

ncbi_organism_name: Halomonas sp. SS10-MC5

ncbi_submitter: The Third Institute of Oceanography, Ministry of Natural Resources of PR China


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Slovenia: pig farm Ihan

ncbi_isolation_source: feces from large intestine

ncbi_organism_name: Prevotella sp. P5-108

ncbi_submitter: University of Ljubljana


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: uncultured Plantibacter sp.

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_01_FULL_40_98


ncbi_country: Taiwan

ncbi_isolation_source: rice rhizosphere

ncbi_organism_name: Allorhizobium terrae

ncbi_submitter: Nation Chung Hsing University


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Norway: Baerum

ncbi_isolation_source: Wastewater pump station

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


ncbi_country: New Zealand: Te Puke

ncbi_isolation_source: Research orchard

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: New Zealand Institute for Plant and Food Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark: Hovedstaden;Copenhagen

ncbi_isolation_source: Proficiency Panel Isolate

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella sp. 76492

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Algeria: El-Tarf

ncbi_organism_name: Bradyrhizobium canariense

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


gtdb_type_species_of_genus: t

ncbi_organism_name: Gangjinia marincola

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: South Korea

ncbi_isolation_source: surface of a eutrophic freshwater pond

ncbi_organism_name: Liquorilactobacillus aquaticus DSM 21051

ncbi_submitter: Shanghai Majorbio


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: New Orleans; LA

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Broad Institute


ncbi_isolation_source: Clinical sample

ncbi_submitter: Erasmus University Medical Center


ncbi_submitter: Carleton Univeristy


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Agharkar Research Institute


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pedobacter ginsengiterrae


ncbi_organism_name: Streptomyces afghaniensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Melbourne

ncbi_isolation_source: seeds

ncbi_organism_name: Chryseobacterium sp. GM_Chr_2

ncbi_submitter: Agriculture Victoria


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_organism_name: Streptomyces lincolnensis

ncbi_submitter: East China University of Science and technology


ncbi_country: Australia: Western Australia

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Lebanon;NH

ncbi_isolation_source: Dartmouth Hitchcock Medical Center

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of New Hampshire


ncbi_country: Germany

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_country: Switzerland: lake Zug

ncbi_isolation_source: freshwater

ncbi_organism_name: Candidatus Methylomirabilis limnetica

ncbi_strain_identifiers: Zug

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__Candidatus Methylomirabilis limnetica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__Candidatus Methylomirabilis limnetica


ncbi_country: USA

ncbi_organism_name: Escherichia coli EC1868

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: Sil NS 32

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: Center for Microbial Communities


ncbi_country: Netherlands

ncbi_isolation_source: Wall biofilm

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Radboud University


ncbi_country: South Africa: North-West; Potchefstroom

ncbi_isolation_source: waste water treatment plant; downstream

ncbi_organism_name: Bacillus sp. B3-WWTP-C-10-D-3

ncbi_submitter: North West University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. B3-WWTP-C-10-D-3


ncbi_assembly_name: Rumen uncultured genome RUG12531

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: University of Birmingham


ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: Guangdong Women and Children Hospital


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_organism_name: Nitrospirae bacterium CG2_30_53_67

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium CG2_30_53_67


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Fusobacterium sp. PH5-44

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Liberibacter psyllidaureus

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Dyadobacter endophyticus

ncbi_submitter: Iowa State University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces scopuliridis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__environmental samples;s__uncultured Candidatus Sumerlaeota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: USDA


ncbi_organism_name: Morganella morganii

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F60349

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Candidatus Syntrophosphaera sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;x__unclassified Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera sp.


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: USA: WA

ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: USA: Maryland

ncbi_organism_name: Proteus mirabilis BB2000

ncbi_submitter: Harvard University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bariatricus massiliensis

ncbi_submitter: University of Chicago


ncbi_isolation_source: pasta filata cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: France

ncbi_isolation_source: cheese rind

ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: INRA


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Iceland: Thveras 21; Reykjavik

ncbi_isolation_source: thallus

ncbi_submitter: University of Iceland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;x__Nostoc cyanobionts;s__Nostoc sp. 'Peltigera membranacea cyanobiont' 210A


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Cladonia metagenome

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Liaocheng university


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Stenotrophomonas rhizophila


ncbi_organism_name: Roseibium sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Brenneria sp. L3_3C_1

ncbi_submitter: Chinese academy of forestry


ncbi_genome_category: derived from single cell

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Aerophobota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aerophobota;s__Candidatus Aerophobota bacterium


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Toho university


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Poland: Zary

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Mycoplasmoides gallisepticum

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Cellvibrionales bacterium UBA2511


ncbi_country: India

ncbi_isolation_source: Adult flesh fly mid gut

ncbi_organism_name: Ignatzschineria ureiclastica


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: CNPSo 108

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 329

ncbi_organism_name: Staphylococcus pasteuri

ncbi_strain_identifiers: SNUC 2657

ncbi_submitter: University of Calgary


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_organism_name: Bhargavaea changchunensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: IMG-taxon 2695420927 annotated assembly

ncbi_organism_name: Lutimaribacter pacificus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Chile

ncbi_isolation_source: soil

ncbi_organism_name: Blastococcus atacamensis

ncbi_submitter: Northumbria University


ncbi_country: China: Naqu City; Tibet Autonomous Region

ncbi_organism_name: Microbacterium wangchenii

ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: Australia: Jervis Bay

ncbi_isolation_source: Associated with marine sponge; Sycon capricorn

ncbi_organism_name: Pseudoalteromonas sp. Scap06

ncbi_submitter: The Commonwealth Scientific and Industrial Research organisation


ncbi_country: India: Karnataka

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Center for Antimicrobial Resistance and Education


ncbi_assembly_name: Rumen uncultured genome RUG668

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Agromyces zhanjiangensis

ncbi_strain_identifiers: SYSU T00266

ncbi_submitter: Sun Yat-sen University


ncbi_isolate: FDA_2010_147_Black Pepper-3

ncbi_isolation_source: peppercorn

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: Opitutaceae bacterium


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong Province; dairy farm

ncbi_isolation_source: rectal feces

ncbi_submitter: China agricultural university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis


ncbi_country: China: Changsha

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xiangya hospital, Central South University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Mitsuokella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Oceanithermus sp.

ncbi_submitter: Portland State University


ncbi_country: Italy: Firenze

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Geothermobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Johns Hopkins Bloomberg School of Public Health


ncbi_country: Antarctica: Lake Vanda; McMurdo Dry Valleys

ncbi_isolation_source: oligotrophic lake microbial mat

ncbi_submitter: University of California Davis


ncbi_country: Norway

ncbi_isolation_source: Human

ncbi_organism_name: Brucella melitensis

ncbi_submitter: NORWEGIAN INSTITUTE OF PUBLIC HEALTH


ncbi_country: Kenya: Kisumu

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_assembly_name: Rumen uncultured genome RUG12002

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Selenomonas ruminantium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: Beijing Genome Institute


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-0839

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Collierbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;x__unclassified Candidatus Collierbacteria;s__Candidatus Collierbacteria bacterium


ncbi_organism_name: Pseudoalteromonas piscicida

ncbi_submitter: Technical University of Denmark


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Tanzania: Zanzibar

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Gemella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Gaiellaceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Streptomyces sp. NBC_00110


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Chulalongkorn University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Firmicutes bacterium UBA2631

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA2631


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Lomalinda


ncbi_isolation_source: chicken gut

ncbi_organism_name: Olsenella sp.


ncbi_isolation_source: Noosa River

ncbi_organism_name: Nitrospira sp. UBA6909


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Oxalobacteraceae sp. CFBP 8755

ncbi_submitter: INRAE


ncbi_country: Senegal

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: University of Florida


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Legionella sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Actinoplanes sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_country: United Kingdom

ncbi_isolation_source: Horse brush

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: intestine

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Brucella abortus

ncbi_strain_identifiers: BEU

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Trinity Bay; Galveston; TX

ncbi_isolation_source: Sediment

ncbi_organism_name: Streptomyces spinoverrucosus

ncbi_submitter: Albert-Ludwigs-Universitaet Freiburg


ncbi_assembly_name: Rumen uncultured genome RUG10732

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_country: Brazil

ncbi_isolation_source: Rectal Swab

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: Italy: Milan

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Siena


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_country: Spain: Malaga

ncbi_isolation_source: Mango tissue

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Malaga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC051000

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Hamburg

ncbi_organism_name: Nitrosomonas ureae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber


ncbi_country: USA: MN

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Japan

ncbi_isolation_source: Brain-Heart-Infusion

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: Department of Infectious Diseases


ncbi_country: Spain: Oviedo

ncbi_isolation_source: surgical wound

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Ec-HUCA 4

ncbi_submitter: Centro de Investigacion Biomedica de La Rioja


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: sewage from commercial farm


ncbi_isolation_source: feed for turkey

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: ANSES


ncbi_organism_name: Usitatibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Russia: Stavropol

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_isolation_source: Fecal samples

ncbi_submitter: INSERM UMR 1137


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Sphingomonas sp. SORGH_AS_0438


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Providencia stuartii

ncbi_submitter: UniCEUMA


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Denmark

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Streptomyces sp. NPDC088732

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: feces

ncbi_organism_name: Thomasclavelia cocleata


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Ares Genetics GmbH


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Democratic Republic of the Congo: Kinshasa

ncbi_isolation_source: fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: France: Biot

ncbi_isolation_source: urine

ncbi_submitter: Anses


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: CDPHE SARS-CoV-2 submissions


ncbi_country: USA

ncbi_isolation_source: environment

ncbi_submitter: Cornell University


ncbi_country: Italy: Apulia

ncbi_isolation_source: blood culture

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: Switzerland: Geneva

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Geneva University Hospital


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Veillonella parvula

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wildermuthiibacteriota;s__Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_02_FULL_49_17


ncbi_country: China: Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: United Kingdom

ncbi_isolation_source: Blood


ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Priestia megaterium

ncbi_submitter: McGill University


ncbi_country: China: Shanghai

ncbi_isolation_source: pork from market

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes sp. CAG:514

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Sweden

ncbi_submitter: Uppsala University


ncbi_organism_name: Rudaea sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yonathiibacteriota;s__Candidatus Yonathbacteria bacterium CG_4_9_14_0_2_um_filter_47_74


ncbi_organism_name: Culicoidibacterales bacterium

ncbi_submitter: Sichuan University


ncbi_country: Argentina

ncbi_isolation_source: ND

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_country: Papua New Guinea

ncbi_isolation_source: Not known

ncbi_submitter: Wellcome Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Worthington


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Kuenenia sp.

ncbi_submitter: EPFL

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__unclassified Candidatus Kuenenia;s__Candidatus Kuenenia sp.


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidade Federal do Para


ncbi_organism_name: Serratia sp. CY52157

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY52157


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: the hong kong university of science and technology


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_submitter: EMG


ncbi_organism_name: Prevotella sp.


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_isolation_source: abdominal drainage

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Peking University People's Hospital


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Microthrixaceae bacterium


ncbi_country: USA: Los Fresnos; Texas

ncbi_isolation_source: nematode community

ncbi_organism_name: Candidatus Xiphinematobacter sp.

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;g__Candidatus Xiphinematobacter;x__unclassified Candidatus Xiphinematobacter;s__Candidatus Xiphinematobacter sp.


ncbi_assembly_level: Chromosome

ncbi_country: South Korea: Hwaseong

ncbi_isolation_source: Infant feces

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Research Laboratories, Ildong Pharmaceutical


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Czechoslovakia

ncbi_organism_name: Brucella suis 92/63

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: China: Shantou; Guangdong

ncbi_isolation_source: marine

ncbi_organism_name: Marinovum sp. PR37

ncbi_submitter: Shantou University


ncbi_country: Argentina: Vila; Santa Fe

ncbi_isolation_source: first pond of the AUR serial dairy industry stabilization pond system

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INTA


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Longibaculum muris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Smithsonian Institution


ncbi_country: Sweden: Oerebro

ncbi_isolation_source: implant-asscoiated infection

ncbi_organism_name: Staphylococcus saccharolyticus

ncbi_submitter: Aarhus University


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Italy

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_country: Japan:Chiba; off Boso Peninsula; Japan Trench

ncbi_isolation_source: deep marine sediment

ncbi_organism_name: Pseudoalteromonas sp. PS1M3

ncbi_submitter: College of Agriculture, Ibaraki University


ncbi_country: Germany: Hamburg

ncbi_organism_name: Nitrosospira multiformis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: University of Bern


ncbi_country: United Kingdom

ncbi_isolation_source: Human


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Japan: Goshogawara city

ncbi_isolation_source: rice field soil

ncbi_organism_name: Clostridium oryzae

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: Chile

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter sp. CFSAN093245

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Onthomorpha sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Onthomorpha;x__unclassified Candidatus Onthomorpha;s__Candidatus Onthomorpha sp.


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: IPLA-CSIC


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_isolation_source: Rainwater

ncbi_organism_name: Lysinibacillus parviboronicapiens

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Candidatus Limiplasma stercoravium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma stercoravium


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Candidatus Hydrogenedentales bacterium

ncbi_submitter: Institute of Water Research

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;x__unclassified Candidatus Hydrogenedentales;s__Candidatus Hydrogenedentales bacterium


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: salami paste production

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus sp. 1004_SSPC

ncbi_submitter: University of Washington


ncbi_organism_name: Chromobacterium piscinae

ncbi_submitter: Universidade Estadual de Londrina - UEL


ncbi_organism_name: Bifidobacterium angulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Subdoligranulum variabile


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: uncultured Smithella sp.


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Curtobacterium flaccumfaciens

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__environmental samples;s__uncultured candidate division Zixibacteria bacterium


ncbi_organism_name: Paenibacillus elgii

ncbi_submitter: Botswana international University of Science and Technology


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Cadiz


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Sanya people's hospital


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Daejeonella sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Washington


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Vienna


ncbi_country: Estonia

ncbi_isolation_source: mouth secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: foot wound

ncbi_organism_name: Thiopseudomonas alkaliphila

ncbi_submitter: CDC


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Anabaena cylindrica PCC 7122

ncbi_submitter: Toyohashi University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Anabaena;s__Anabaena cylindrica;x__Anabaena cylindrica PCC 7122


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Clostridiales bacterium UBA1779

ncbi_submitter: University of Queensland


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: freshwater MAG --- Loc090116-1m_bin-0990

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Dickeya fangzhongdai

ncbi_submitter: Bacteria


ncbi_country: China: Jiangxi

ncbi_isolation_source: citrus infected tissue

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Citrus Research and Education center, Univerisity of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_country: Canada: Newfoundland

ncbi_isolation_source: Imported/domestic retail Mussels

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_country: China: Yuhang; Hangzhou

ncbi_organism_name: Wolbachia endosymbiont of Bemisia tabaci

ncbi_strain_identifiers: China 1

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Aliarcobacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Lachnobacterium sp.


ncbi_country: Bangladesh

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus EKP-026

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus EKP-026


ncbi_country: Turkey: Adana

ncbi_isolation_source: Field

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_assembly_name: freshwater MAG --- Day6-6_bin-363

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0391

ncbi_submitter: Broad Institute


ncbi_country: Nicaragua: Managua

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: Svalbard: Ny-Alesund

ncbi_isolation_source: Cold environment (ENVO:01000309)

ncbi_organism_name: Pseudomonas svalbardensis

ncbi_submitter: Polar Research Institute of China


ncbi_isolate: AOP42_E1_surf _bin _8

ncbi_organism_name: Moraxellaceae bacterium

ncbi_strain_identifiers: AOP42_E1_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: Synergistes jonesii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Qipengyuania citrea

ncbi_submitter: University of Southern California


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 3d patty soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Peking university


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Alberta


ncbi_country: China: swine farm

ncbi_isolation_source: pericardial effusion

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Ramon y Cajal


ncbi_country: USA: Texas

ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Canada: Gatineau; Quebec

ncbi_isolation_source: Root nodule from soybean plant inoculated with root zone soil from Desmodium canadense

ncbi_organism_name: Bradyrhizobium septentrionale


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_country: China

ncbi_isolation_source: blood

ncbi_submitter: Zhengzhou University


ncbi_submitter: zhejiang university


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Yushu Prefecture; Qinghai Province

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Eggerthellaceae bacterium zg-997

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Jinan

ncbi_isolation_source: soil

ncbi_organism_name: Heyndrickxia coagulans XZL9

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: China: Jiangxi

ncbi_isolation_source: Rhizosphere of camphor trees

ncbi_organism_name: Pseudomonas sp. BN606


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Chile: Talca

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: France

ncbi_submitter: ANSES


ncbi_country: China: Kaifeng; Henan Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Mogibacterium timidum

ncbi_submitter: EMG


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Afipia sp. 62-7

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Caenimonas sp.

ncbi_submitter: Stockholm University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_isolation_source: Cake

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Spirulina sp. CCNP1310

ncbi_submitter: Universidade de Sao Paulo, Sao Paulo, Brazil


ncbi_country: Japan: Tokyo

ncbi_isolation_source: water

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Aminobacterium colombiense


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: University of California Berkeley


ncbi_country: China: Jiangsu

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Laboratory for Diagnosis and Treatment of Infectious Diseases


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: Yancheng Institute of Technology


ncbi_organism_name: uncultured Chromatiaceae bacterium


ncbi_country: China: Zhejiang

ncbi_submitter: Taizhou Municipal Hospital


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA747

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA747


ncbi_organism_name: Petrimonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Aquiluna sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Aquiluna;x__environmental samples;s__uncultured Aquiluna sp.


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Escherichia coli KTE37

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Victivallis vadensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0063


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: uncultured Victivallaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Small intestine

ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Candidatus Onthovivens sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Onthovivens;x__unclassified Candidatus Onthovivens;s__Candidatus Onthovivens sp.


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Haemophilus influenzae


ncbi_country: USA: California; Eel River; Elder Creek

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Oscillatoriales cyanobacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Tatumella citrea

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Aachen

ncbi_isolation_source: Feces

ncbi_organism_name: Hominiventricola filiformis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Streptomyces sp. NPDC090029

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces globisporus


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Desulfurivibrio sp. C05AmB

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Vibrio rotiferianus

ncbi_submitter: Shantou University


ncbi_organism_name: Thermosulfidibacteraceae bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: Rumen uncultured genome RUG14125

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Fluviicola sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Calgary

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Calgary


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_country: Burkina Faso

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Uganda: Kabwohe wetland near Mbarara

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. MWH-UH25E

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonas australica

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Brazil: Minas_Gerais_1

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: tracheobronchial aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_country: China: Gansu

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_country: South Korea:Tae-an sediment

ncbi_isolation_source: oil-contaminated sediment

ncbi_organism_name: Parazoarcus communis

ncbi_submitter: Gyeongbuk Institute for Marine Bioindustry(GIMB)


ncbi_assembly_name: freshwater MAG --- MJ130702B_bin-413

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: USA: University of Alabama at Birmingham

ncbi_isolation_source: male urethra during a study of non-gonococcal urethritis

ncbi_organism_name: Ureaplasma urealyticum 4155

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Holophagaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Washington


ncbi_organism_name: Oscillibacter sp. MSJ-31

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: India: Kerala

ncbi_isolation_source: hydrocarbon contaminated water

ncbi_organism_name: Hoeflea olei

ncbi_submitter: UoH


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae SGBS001

ncbi_submitter: MD Anderson Cancer Center


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: EMG


ncbi_country: Lebanon

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: lettuce field

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: University Claude Bernard Lyon 1


ncbi_organism_name: Sphingobium boeckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: Non-ICU

ncbi_organism_name: Staphylococcus aureus M0213

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: uncultured Comamonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Psychrobacter sp.


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Nanjing University


ncbi_country: Japan:Tokyo; esutuary of the Arakawa River

ncbi_isolation_source: estuary sediment of the Arakawa River

ncbi_organism_name: Sinisalibacter aestuarii

ncbi_submitter: Laboratory of Applied Microbiology Course of Applied Marine Biosciences, Tokyo University of Marine Science and Technology


ncbi_country: USA: Bethesda

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Zunongwangia sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: BEI Resources


ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium pullorum;sb__Bifidobacterium pullorum subsp. gallinarum;x__Bifidobacterium pullorum subsp. gallinarum DSM 20670


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Tidjanibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W21945


ncbi_country: China: Guangdong

ncbi_isolation_source: Deep venous catheter

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Brevibacillus brevis NBRC 100599

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Brevibacillus;s__Brevibacillus brevis;x__Brevibacillus brevis NBRC 100599


ncbi_country: South Korea: Gyeonggi-do

ncbi_submitter: Animal and Plant Quarantine Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Serratia marcescens

ncbi_submitter: West Virginia University


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Treponema merdequi

ncbi_submitter: Quadram Institute


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus pneumoniae PNI0427

ncbi_submitter: Washington University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Halomonas casei

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: [Clostridium] innocuum


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The University of Queensland


ncbi_organism_name: Oleispira sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Liard River

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: sub-seafloor sulfide deposits

ncbi_organism_name: bacterium BMS3Abin01

ncbi_submitter: JAMSTEC


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Cyanobacteria bacterium P01_A01_bin.45

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_A01_bin.45


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 co-cultured with S. maltophilia in Synthetic Cystic Fibrosis Media for 24 days in the absence of imipenem

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_country: Russia: Severnaya Zemlya; Krasnoyarsk region

ncbi_isolation_source: bottom sediments

ncbi_organism_name: Microbacterium sp. IEGM 1404

ncbi_strain_identifiers: IEGM 1404

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_organism_name: Escherichia coli

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Streptomyces sp. GBA 94-10 4N24

ncbi_submitter: Bielefeld University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__unclassified Streptomyces;s__Streptomyces sp. GBA 94-10 4N24


ncbi_country: Baltic Sea

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Cryomorphaceae;x__unclassified Cryomorphaceae;s__Cryomorphaceae bacterium BACL7 MAG-120910-bin2


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-102

ncbi_isolation_source: bioreactor sludge

ncbi_strain_identifiers: new MAG-102

ncbi_submitter: Micoorganism


ncbi_organism_name: Candidatus Alistipes excrementavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acetobacter pasteurianus NBRC 3299

ncbi_strain_identifiers: NBRC 3299

ncbi_submitter: Yamaguchi University


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: Rumen uncultured genome RUG773

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Taiwan

ncbi_isolation_source: shallow sea hydrothermal fluids

ncbi_organism_name: Thiomicrospira sp.

ncbi_submitter: Ministry of Natural Resources, Third Institute of Oceanography


ncbi_organism_name: Chlamydia pecorum

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Paraburkholderia sp. RCC_158

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Canada

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_organism_name: Pseudomonas sp. CCC4.1

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Limnobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: China: Jiangsu

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter koseri

ncbi_strain_identifiers: NJ

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: USA: Boston

ncbi_isolation_source: Urine

ncbi_organism_name: Citrobacter sp. MGH 55

ncbi_strain_identifiers: MGH 55

ncbi_submitter: Broad Institute


ncbi_isolation_source: Caecum


ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Torrance; CA

ncbi_isolation_source: clinical

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Experimental Medicine


ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium pseudocatenulatum;x__Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505


ncbi_country: China: Kunming

ncbi_isolation_source: cattail

ncbi_organism_name: Nonomuraea typhae

ncbi_submitter: School of life science


ncbi_country: China: Hebei

ncbi_isolation_source: Baiyang Lake

ncbi_organism_name: Jeotgalibacillus sp. R-1-5s-1

ncbi_submitter: institute of microbiology,chinese academy of sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Micromonospora sp. NPDC126480

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Utrecht University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: fecal sample

ncbi_organism_name: Shigella flexneri 2a

ncbi_strain_identifiers: Sflex 21-42

ncbi_submitter: University of British Columbia


ncbi_country: Brazil

ncbi_organism_name: Rickettsia rickettsii

ncbi_strain_identifiers: Taiacu

ncbi_submitter: NIAID


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: hamburger

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroides sp. AF32-15BH

ncbi_submitter: BGI


ncbi_submitter: Aarhus University


ncbi_country: Austria: St. Poelten

ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis

ncbi_submitter: AGES


ncbi_country: Germany

ncbi_isolation_source: Carrots

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Max Rubner-Institut


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Chlorobium sp.

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Spain

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Municipal Hospital Affiliated to Taizhou University


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Arthrobacter sp. W4I7

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CENTRAL RESEARCH INSTITUTE OF FOOD AND FEED CONTROL


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptomyces sp. NPDC051079

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Taizhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Russia: Krasnodar region

ncbi_isolation_source: sulfide spring

ncbi_organism_name: Thioflexithrix psekupsensis

ncbi_submitter: New England Biolabs


ncbi_organism_name: Segatella maculosa