ncbi_country: France

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: L'Oreal


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Italy

ncbi_genome_representation: full

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China

ncbi_isolation_source: pig farm

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Denmark

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: Campylobacter sp. CH182

ncbi_submitter: University of Padova


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: USA:New York; Morrisania

ncbi_isolation_source: nasal


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water

ncbi_organism_name: Synechococcus sp. RSCCF101

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale


ncbi_submitter: Zhejiang university


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Moskow Lomosonov State University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_assembly_name: Rumen uncultured genome RUG10203

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Malacoplasma iowae

ncbi_submitter: MolliScience Kft.


ncbi_country: United Kingdom: England

ncbi_isolation_source: soil

ncbi_organism_name: Flavobacterium johnsoniae UW101

ncbi_submitter: FDA

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Croatia

ncbi_isolation_source: Tumor tissue

ncbi_organism_name: Allorhizobium sp. Av2

ncbi_submitter: Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), EP


ncbi_organism_name: Ancylomarina sp. DW003

ncbi_submitter: Ocean University of China


ncbi_country: Malaysia: Perak

ncbi_isolation_source: Cloacal swabs from broiler chicken at slaughter house

ncbi_strain_identifiers: UPM 260

ncbi_submitter: Institute of Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Elgin; Illinois

ncbi_isolation_source: sink drain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_organism_name: Empedobacter stercoris

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Bangladesh

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: bglFP 6789

ncbi_submitter: University of Amsterdam


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Xylophilus ampelinus

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Brachymonas sp.

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterobacter hormaechei


gtdb_type_species_of_genus: t

ncbi_country: Australia: Southeast Queensland

ncbi_organism_name: Frondihabitans australicus

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: freshwater MAG --- Day2-2_bin-152

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paracoccus aerius

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Wyoming

ncbi_isolation_source: Aquatic Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human eye

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL FOOD INSTITUTE - DTU


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: South Korea

ncbi_isolation_source: vegetable fermented food (kimchi)

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Pulmuone Institute of Technology


ncbi_country: China: Xinjiang

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Shijiazhuang Junlebao Dairy Co., Ltd.


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Treponema sp.

ncbi_submitter: INRA


ncbi_country: Peru: Lima

ncbi_isolation_source: mining drainage

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Enterocloster lavalensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: China: Fujian; Longyan

ncbi_isolation_source: mining soil

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Gluconobacter sp. Dm-62

ncbi_submitter: Cornell University


ncbi_assembly_name: Salinibacter ESAV87

ncbi_organism_name: Salinibacter sp.

ncbi_submitter: IMEDEA


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: Taiwan

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: Academia Sinica


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ileibacterium valens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Dermacoccus sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Olegusella massiliensis

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Italian National Institute of Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Oscillibacter sp. KLE 1728

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Australia

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Statens Serum Institut


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Sphingobacterium multivorum


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: Xiamen University


ncbi_country: Sri Lanka

ncbi_isolation_source: vaginal swab post-delivery

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: Bohai Sea

ncbi_isolation_source: sediment

ncbi_submitter: Ocean University of China


ncbi_organism_name: Nannocystis pusilla

ncbi_submitter: University of Mississippi


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_country: France

ncbi_submitter: Inserm


ncbi_country: China: Beijing

ncbi_isolation_source: Chinese Academy of Agricultural Sciences

ncbi_organism_name: Bacillus velezensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: IMG-taxon 2619619031 annotated assembly

ncbi_organism_name: Actinopolyspora xinjiangensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01511

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01511


ncbi_assembly_name: Rumen uncultured genome RUG14921

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Jiangxi; Yongping

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China

ncbi_isolation_source: pit mud

ncbi_organism_name: Caproicibacterium lactatifermentans

ncbi_submitter: Jiangnan university


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S108-09120


ncbi_isolation_source: Hospital surface

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: White filamentous biomass growing on seagrass stems near kelp deposits on a beach at Helgoland

ncbi_organism_name: uncultured Sulfurovum sp.

ncbi_submitter: MPIBREMEN


ncbi_isolation_source: soil

ncbi_organism_name: Brevibacillus brevis

ncbi_submitter: University of Brasilia


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Micromonospora sp. NPDC005174

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: IA

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany: Jena

ncbi_isolation_source: Red-pigmented microbial biofilm developed on the inner wall of a bioreactor

ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: Darwin Bioprospecting Excellence SL


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_assembly_name: freshwater MAG --- Loc080925-5-5m_bin-0078

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus WMCA6092

ncbi_submitter: Broad Institute


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: biochar-amended oxisol soil plot 3

ncbi_organism_name: Streptomyces sp.

ncbi_submitter: Arizona State University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: EMG


ncbi_country: Denmark: Viborg

ncbi_isolation_source: enrichment reactor seeded with activated sludge

ncbi_organism_name: Candidatus Fermentibacter danicus

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus


ncbi_organism_name: Planktothrix sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Slovenia

ncbi_isolation_source: Milk from the udder of a cow with mastitis

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: DGA CBRN Defence Center


ncbi_organism_name: Halomonas alkalicola

ncbi_strain_identifiers: CICC 11012s

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: China: Shandong

ncbi_isolation_source: anal swabs from commercial chicken farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Trinidad and Tobago

ncbi_isolation_source: swab

ncbi_submitter: University of the West Indies


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Lethbridge Research Centre


ncbi_assembly_name: Rumen uncultured genome RUG14105

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_isolation_source: young female patient

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: JHU

ncbi_submitter: Johns Hopkins University


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Texas A&M University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Pseudomonadaceae bacterium


ncbi_country: Taiwan

ncbi_organism_name: Endozoicomonas acroporae

ncbi_submitter: Academia Sinica


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Vienna


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Thessaly


ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_isolate: SPRUCE 376

ncbi_organism_name: Candidatus Binatus sp.

ncbi_strain_identifiers: SPRUCE 376

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;x__unclassified Candidatus Binatus;s__Candidatus Binatus sp.


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Kenya Medical Research Institute


ncbi_submitter: EMG


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: intestinal content

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: ChinaCDC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Day2-4_bin-370

ncbi_organism_name: uncultured Oscillochloris sp.

ncbi_submitter: BILS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Flavipsychrobacter stenotrophus

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermodesulfovibrio sp.

ncbi_submitter: Portland State University


ncbi_country: Brazil

ncbi_isolation_source: catheter tip

ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Instituto Oswaldo Cruz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: TX

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Limnohabitans sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: [Leptolyngbya] sp. JSC-1

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__[Leptolyngbya] sp. JSC-1


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: adrenal gland

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Sao Paulo


ncbi_country: Thailand: Nakhon pathom

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Ligilactobacillus sp. MP3

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: Urine


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW301-21B01

ncbi_submitter: Arkin Lab


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Universite catholique de Louvain


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Pseudomonas sp.


ncbi_country: USA: Massachusetts

ncbi_isolation_source: tongue scraping

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: France

ncbi_isolation_source: pharmaceutical preparation

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: CIRM-BIA 784

ncbi_submitter: Brigham Young University


ncbi_country: United Kingdom

ncbi_isolation_source: Slurry

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Nottingham


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Turicimonas muris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human skin

ncbi_organism_name: Chryseobacterium joostei

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Paenibacillus cellulosilyticus

ncbi_strain_identifiers: CECT 5696

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Motilibacteraceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: seawater of Mallipo; Korea.

ncbi_organism_name: Flavimaricola marinus

ncbi_strain_identifiers: CECT 8899

ncbi_submitter: UVEG


ncbi_isolation_source: antelope (Oryx leucoryx)

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Switzerland: Kerzers

ncbi_organism_name: Schaalia sp. 19OD2882

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: wound labia

ncbi_organism_name: Corynebacterium sp. HMSC065A05

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: France: Limoges

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris Sud


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enterobacteriaceae bacterium UBA2655

ncbi_submitter: University of Queensland


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_country: China: Beijing

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China

ncbi_isolation_source: blood

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Gilvibacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Streptomyces sp. NPDC058084

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Saudi Arabia: Jeddah

ncbi_isolation_source: Sea water

ncbi_organism_name: Enterobacter sp. K16B

ncbi_submitter: King Abdulaziz university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_level: Chromosome

ncbi_isolation_source: host s whole body

ncbi_organism_name: Buchnera aphidicola (Cinara strobi)

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces griseus

ncbi_submitter: SWANSEA UNIVERSITY


ncbi_country: Poland: Wroclaw

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: USA

ncbi_isolation_source: Small intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Church and Dwight


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-6037

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_country: Russia: Khara-Nur Lake; Tazheran System

ncbi_organism_name: Rhodobacter sp. Har01

ncbi_submitter: NRC "Kurchatov Institute"


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1918S

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: Brazil

ncbi_isolation_source: milk

ncbi_organism_name: Yersinia kristensenii

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Washington

ncbi_isolation_source: rabbit

ncbi_organism_name: Treponema pallidum

ncbi_submitter: University of Washington


ncbi_organism_name: Methylomonas sp. MK1

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12248

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Actinobacteria bacterium UBA2967

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Corynebacterium casei

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_organism_name: Rhodococcus ruber

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_organism_name: Streptomyces sp. NPDC058424

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salinicoccus roseus

ncbi_submitter: Moscow State University


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Salmonella sp. NW578

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Alteromonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UQCCR


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Malaysia: Negeri Sembilan

ncbi_isolation_source: Aquaculture pond water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Sphingobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Malaysia

ncbi_isolation_source: Peat soil samples

ncbi_organism_name: Paenibacillus sp. D2_2

ncbi_submitter: AIMST University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_isolation_source: water

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University


ncbi_country: USA: CA

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Broad Institute


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_assembly_name: Rumen uncultured genome RUG14550

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 6490

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhodoplanes serenus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Aerococcus sp.


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_assembly_name: Rumen uncultured genome RUG12348

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella sp. JN_Kp130

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Guizhou

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: India: Bhubaneswar

ncbi_isolation_source: eye

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Institute of Life Sciences


ncbi_country: USA: PA

ncbi_isolation_source: stomach (Odocoileus virginianus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Poland: farmland in Jasienowka

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: University of Bialystok


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: Finland

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Helsinki


ncbi_organism_name: Mycolicibacterium nivoides

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 300

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: KY

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Germany: Freising

ncbi_organism_name: Eubacterium sp. BL-380-WT-2B

ncbi_submitter: UniKlinik RWTH Aachen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. BL-380-WT-2B


ncbi_country: China: Guangxi Province

ncbi_isolation_source: intestines

ncbi_organism_name: Lysobacter sp. GX 14042

ncbi_submitter: Guangxi University for Nationalities


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: China: Xianning city

ncbi_isolation_source: rizosphere of ramie plants

ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Huazhong University of Science and Technology


ncbi_isolation_source: wastewater

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Bacteroides merdavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Thammasat University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Streptomyces syringium

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Croatia: Split

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_organism_name: Streptomyces longwoodensis


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: China: Nanjing

ncbi_isolation_source: Laboratory-scale bioreactor

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: NanJing University


ncbi_country: China:GanSU;Wuwei; Loess Plateau

ncbi_isolation_source: Gastric cancer

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Lanzhou University Second Hospital


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: 2335MB;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2009C-4258


ncbi_country: Malaysia

ncbi_isolation_source: seafood

ncbi_organism_name: Vibrio parahaemolyticus S163

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S163


ncbi_country: France

ncbi_isolation_source: Corse; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: municipal sewage

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus sharpeae;x__Lacticaseibacillus sharpeae JCM 1186 = DSM 20505


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Chung Ang University


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_country: United Kingdom

ncbi_isolation_source: wheat rhizosphere from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-R-05

ncbi_submitter: Rothamsted Research


ncbi_organism_name: Mesorhizobium sp. LSHC424B00

ncbi_submitter: University of Southern California


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Komeilibacteria bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Komeiliibacteriota;x__unclassified Candidatus Komeilibacteria;s__Candidatus Komeilibacteria bacterium


ncbi_country: Netherlands

ncbi_isolation_source: stable manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: host s whole body

ncbi_organism_name: Buchnera aphidicola (Cinara pseudotaxifoliae)

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_isolate: MEAT

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: MEAT;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 22 - depth 500m

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Rennes


ncbi_organism_name: Shinella sp.

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Sulfurovum sp.


ncbi_organism_name: Aeromonas caviae


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: CAU


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Comamonas sp.


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Victivallaceae bacterium


ncbi_organism_name: Cloacibacterium caeni

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 1312

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_strain_identifiers: CIM:MAG 1312

ncbi_submitter: Mayo Clinic


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Proteobacteria bacterium UBA2383

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA2383


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Emek Medical center


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Miltoncostaeaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Argentina

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Rhizobium esperanzae

ncbi_strain_identifiers: SEMIA 4057

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: DSM 10

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Streptococcus infantarius

ncbi_submitter: UIUC


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: Technische Universitaet Muenchen


ncbi_submitter: UNIVERSIDAD DE VALENCIA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Helicobacter macacae MIT 99-5501

ncbi_submitter: Broad Institute


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T28854


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Micromonospora sp. NPDC007230

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- AlinenSediments_bin-1385

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: Belarus

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Methylobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Chile: Los Lagos; Cahuelmo Hot Spring

ncbi_isolation_source: non-acidic hot spring microbial mat

ncbi_organism_name: Chlorogloeopsis fritschii C42_A2020_084

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Zhejiang University


ncbi_isolation_source: root nodule

ncbi_organism_name: Paraburkholderia ribeironis

ncbi_submitter: IRD


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Thailand: Uttaradit

ncbi_isolation_source: Hemoculture

ncbi_organism_name: Streptococcus suis YB51

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bredeney


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: Atlantis Massif Sediment

ncbi_organism_name: Acidobacteria bacterium AH-259-O06

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteria bacterium AH-259-O06


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Allobaculum fili

ncbi_submitter: UMC Utrecht


ncbi_country: South Korea

ncbi_organism_name: Marinimicrobium agarilyticum DSM 16975

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus pyogenes ABC020052497

ncbi_submitter: Broad Institute


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Corynebacterium matruchotii

ncbi_submitter: EMG


ncbi_isolation_source: chicken

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Zoonosis Science Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_isolation_source: seawater

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Deep-Sea Bioresource Research Group , Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Parvularcula sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Lachnoanaerobaculum sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Tenacibaculum sp. UWU-22

ncbi_submitter: Tenacibaculum serratae UWU-22


ncbi_isolation_source: stool

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Texas A&M University


ncbi_country: China: Heilongjiang

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Kiel University


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp. UBA2828

ncbi_submitter: University of Queensland


ncbi_country: China: Kunming

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Mexico

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Pennsylvania

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Minnesota Duluth


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_submitter: Christian Medical College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Collinsella tanakaei

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mycoplasma sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Parma


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Clostridioides difficile 840

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hunan

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Microbispora bryophytorum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Candidatus Rhodoferax odensensis

ncbi_submitter: Aalborg University


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Corynebacterium rouxii

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Zoogloea sp.

ncbi_submitter: Xiamen University


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Microcystis panniformis

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Bacteroides fragilis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Syntrophaceae bacterium


ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: Sri Lanka: Karawanalla

ncbi_isolation_source: blood

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Rajarata University of Sri lanka


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_assembly_name: Rumen uncultured genome RUG14770

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with photo-oxidized crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Gilliamella sp.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium GW2011_GWB1_43_14


ncbi_country: USA: Houston

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Estonia: Polvamaa; Kooraste

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis


ncbi_strain_identifiers: IFED 8 KV

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Chester


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces lasiicapitis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA

ncbi_isolation_source: Backyard chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Missouri


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Spain: Barcelona

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: ITQB


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Chicago


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: University of Zurich


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China: Zhejiang

ncbi_isolation_source: kidney preservation fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital,College of Medicine,Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Nigeria

ncbi_isolation_source: stool

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Cepheid


ncbi_country: Nigeria: Ede

ncbi_isolation_source: Rhizosphere of Soya beans

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Adeleke University


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPLOWO2_01_FULL_36_16


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 831240

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Redwood City; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Garciella nitratireducens

ncbi_submitter: University of California, Berkeley


ncbi_country: Brazil: Iracemapolis

ncbi_isolation_source: Brazilian ethanol production industries

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Univesity of Sao Paulo


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Minnesota


ncbi_isolation_source: feces


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: uncultured Altererythrobacter sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Cyclobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: France

ncbi_isolation_source: Prepared meat meal

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: McGill University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: unknown

ncbi_organism_name: Candidatus Brocadiaceae bacterium

ncbi_submitter: UNIVERSITY OF JENA

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__unclassified Candidatus Brocadiaceae;s__Candidatus Brocadiaceae bacterium


ncbi_country: Italy: Catania

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_country: Finland: Helsinki

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Uppsala University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: NHGRI/NIH


ncbi_country: United Kingdom

ncbi_isolation_source: Laboratory strain


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: food sample

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of Coimbra


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Helicobacter canis

ncbi_submitter: University of California, Davis


ncbi_country: China: Zhejiang

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The First Affiliated Hospital of Medical College, Zhejiang University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial alveolar lavage

ncbi_organism_name: Staphylococcus aureus M0816

ncbi_submitter: Broad Institute


ncbi_isolate: Human

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Human

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Rhizobium viscosum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan: Niigata

ncbi_isolation_source: paddy soil

ncbi_organism_name: Geomonas sp. Red32

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter sp. TUM15064

ncbi_submitter: Toho University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Limosilactobacillus sp.


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: The First Hospital of Jilin University


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Northwestern University


ncbi_country: Czech Republic: Sedlcany

ncbi_isolation_source: Conjunctiva

ncbi_organism_name: Acinetobacter schindleri NIPH 900

ncbi_strain_identifiers: NIPH 900


ncbi_country: China: Liaoning

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: Thailand

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Candidatus Rhabdochlamydia sp.

ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Candidatus Rhabdochlamydiaceae;g__Candidatus Rhabdochlamydia;x__unclassified Candidatus Rhabdochlamydia;s__Candidatus Rhabdochlamydia sp.


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Erysipelothrix sp.


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: candidate division FCPU426 bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division FCPU426;s__candidate division FCPU426 bacterium


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Methylophilus sp.


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Burkholderia pseudomallei


ncbi_assembly_name: Rumen uncultured genome RUG10678

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: GNS Science


ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes communis

ncbi_submitter: SAHMRI


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: ANSES


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Spain

ncbi_submitter: Wageningen University & Research


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: Human

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Infection, Veterinary & Ecological Sciences


ncbi_country: USA: Tennessee;Knoxville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Colorado State University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A.C. (CIAD). Hermosillo, Sonora, Mexico.


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Australia: NSW

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_country: USA:Los Angeles

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Sinorhizobium sp. P24N7

ncbi_submitter: Universidad Autonoma del Estado de Morelos


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: United Kingdom

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: China: Shanghai

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: EMG


ncbi_organism_name: Acidithiobacillus ferriphilus

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Roseobacter sp. CCS2

ncbi_submitter: Gordon and Betty Moore Foundation Microbial Genome Sequencing Project


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: Italy: Sienna

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: India: Vellore

ncbi_submitter: Christian Medical College


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S32

ncbi_organism_name: Sutterellaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: India


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Autonoma de Sinaloa


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Sri Lanka

ncbi_isolation_source: shell on shrimp

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000218


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Qipengyuania flava

ncbi_submitter: Yantai University


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Zhejiang University


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: ground beef

ncbi_submitter: University of Hohenheim


ncbi_organism_name: Yersinia pseudotuberculosis


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: EMG


ncbi_submitter: Chulalongkorn University


ncbi_country: Pakistan: Faisalabad

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_assembly_name: Lactobacillus reuteri 3c6

ncbi_organism_name: Limosilactobacillus reuteri subsp. porcinus

ncbi_submitter: Institute of Food Researchm


ncbi_isolation_source: Urine

ncbi_submitter: WTSI


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: USA: CA

ncbi_isolation_source: alfalfa sprout


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: NanJing University


ncbi_organism_name: Enterococcus faecalis EnGen0241

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Munster Technological University


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Caucasica


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Brevibacillus nitrificans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Jordan

ncbi_isolation_source: spice

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bosea sp. BK604

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. BK604


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Pseudoalteromonas rhizosphaerae

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Chicago


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Paraburkholderia sp. 35.1


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Maribacter chungangensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Clathrolucina costata


ncbi_organism_name: uncultured Desulfobacula sp.


ncbi_organism_name: Tardiphaga sp. 866_E4_N1_4

ncbi_submitter: VIB


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Maryland


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Bacillus thuringiensis serovar aizawai

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar aizawai


ncbi_country: China: Guangxi

ncbi_isolation_source: Pleural effusion

ncbi_organism_name: Nocardia farcinica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- VK_bin-4569

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: Sweden: Lund

ncbi_isolation_source: blood

ncbi_organism_name: Aerococcus mictus

ncbi_submitter: Region Zealand


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: subgingival plaque biofilm

ncbi_organism_name: Porphyromonas gingivalis F0570

ncbi_submitter: Washington University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Methylotenera oryzisoli

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Albidovulum sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: EPFL


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Pirellula sp.

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: Neobacillus sp. YIM B06451

ncbi_submitter: Yunnan Institute of Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Neobacillus;x__unclassified Neobacillus;s__Neobacillus sp. YIM B06451


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: sputum

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolate: Urine

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: NILS82:B2;STp 1;STw 95;Urine;O1:H7

ncbi_submitter: UMR 1137 IAME


ncbi_assembly_name: freshwater MAG --- YR_bin-0846

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen people's hospital