ncbi_country: USA: Michigan

ncbi_organism_name: Rhodococcus sp. PvP016

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. PvP016


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_genome_representation: full

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_assembly_level: Scaffold

ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Moscow

ncbi_isolation_source: urina

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: USA: NC

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: Denmark

ncbi_isolation_source: wound

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Rhodococcus sp. NBC_00294

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NBC_00294


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Caldisericaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: China: Shenzhen; Guangdong

ncbi_organism_name: Bradyrhizobium iriomotense

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacteroides intestinalis


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: Environment; industry

ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Germany: Sylt

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Surveillance swab

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Guangzhou

ncbi_isolation_source: feed

ncbi_organism_name: Escherichia coli

ncbi_submitter: SouthChina Agriculture University


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Sulfitobacter dubius


ncbi_country: USA: Alabama

ncbi_isolation_source: rhizosphere of the salt marsh grasses

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Slovenia

ncbi_isolation_source: Fench salad

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: DGA CBRN Defence Center


ncbi_country: USA: Pennsylvania; Centralia

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Michigan State University


ncbi_country: Australia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Octapeptin C4

ncbi_submitter: The University of Queensland


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: Tucson; Pima; AZ

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Northern Arizona University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RIFCSPLOWO2_01_FULL_39_21


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_assembly_level: Chromosome

ncbi_country: Switzerland

ncbi_isolation_source: milk sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Granulicella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China

ncbi_isolation_source: fermented yoghurt

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Tianjin University of Science and Technology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Leucobacter sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Aquificales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Candidatus Coproplasma sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;x__environmental samples;s__uncultured Candidatus Coproplasma sp.


ncbi_organism_name: Streptomyces antibioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Enterobacter sp. yb_8

ncbi_submitter: WenZhou Medical University


ncbi_submitter: University College Cork


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lachnospira eligens


ncbi_organism_name: Guyparkeria sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 16d patty soil

ncbi_submitter: Peking university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada

ncbi_isolation_source: field

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: Candidatus Enterosoma sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Enterosoma;x__unclassified Candidatus Enterosoma;s__Candidatus Enterosoma sp.


ncbi_country: China: Beijing; Wangshang Village; Tongzhou District

ncbi_organism_name: Altererythrobacter sp. C41

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: poultry farm

ncbi_organism_name: Arthrobacter sp. DNA4

ncbi_submitter: Shandong First Medical University


ncbi_isolation_source: Mesocosm experiment

ncbi_organism_name: uncultured Endozoicomonas sp.

ncbi_strain_identifiers: Endozoicomonas cretensis sp.

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_organism_name: Waltera sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Treponema sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED31

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED31


ncbi_country: United Kingdom

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Bloodstream

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter cronae

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Yale University School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; Southern Atlantic

ncbi_organism_name: Prochlorococcus sp. AH-716-I09

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 239

ncbi_submitter: SC


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Synechococcaceae bacterium WBA_2_066

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: food additive Floractin

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: Vreelandella arctica

ncbi_refseq_category: reference genome

ncbi_submitter: Third Institute Of Oceanography

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Zhengzhou

ncbi_isolation_source: Powdered Infant Formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Henan Center for Diease Control and Prevention


ncbi_organism_name: Chlamydia pecorum W73

ncbi_submitter: Moredun Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia pecorum;x__Chlamydia pecorum W73


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Oxford


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptomyces sp. NPDC001674

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: North Carolina

ncbi_isolation_source: Groin Wnd

ncbi_organism_name: Klebsiella pneumoniae CHS 06

ncbi_strain_identifiers: CHS 06

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 06


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: Canada: Quebec City

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: France: Arcueil

ncbi_isolation_source: vagina

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: Viet Nam: Bac Lieu

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Pseudoscillospira faecavium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Pseudoscillospira;s__Candidatus Pseudoscillospira faecavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pseudoscillospira;s__Candidatus Pseudoscillospira faecavium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Actinomyces urogenitalis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alicyclobacillus fastidiosus

ncbi_submitter: Prof. Waclaw Dabrowski Institute of Agriculture and Food Biotechnology State Research Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: spleen

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Shanghai Veterinary Research Institute, CAAS


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0108


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Enterobacter mori

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Kansas City

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. 2018MI27

ncbi_submitter: Texas Tech University


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-0351

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Syntrophaceticus sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Thermoanaerobacterales Family III. Incertae Sedis;g__Syntrophaceticus;x__unclassified Syntrophaceticus;s__Syntrophaceticus sp.


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: freshwater MAG --- Loc090907-8m_bin-866

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: The Fifth Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: Clostridium sp. AF36-4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 149 - depth 200m

ncbi_organism_name: Moraxellaceae bacterium REDSEA-S32_B1

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Desulfovibrio piger


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Eubacteriaceae bacterium


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


gtdb_type_species_of_genus: t

ncbi_country: USA: Beluga River Natural Gas Field; Alaska

ncbi_isolation_source: Produced water collected from a coal-bed methane (CBM) producing well

ncbi_organism_name: Youngiibacter fragilis 232.1

ncbi_submitter: University of Oklahoma


ncbi_country: USA: Texas

ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Laboratory for Foodborne Zoonoses


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Egypt: South Sinai; Red Sea

ncbi_isolation_source: estuarine open water pycnocline [ENVO:01001323]

ncbi_organism_name: Nocardiopsis dassonvillei

ncbi_submitter: Suez Canal University


ncbi_organism_name: Acidovorax sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: 2255MB;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_organism_name: Terribacillus saccharophilus

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Myxococcaceae bacterium


ncbi_organism_name: Salmonella sp. NW985

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Alistipes finegoldii


ncbi_assembly_name: WGS using MinION R10.4.1 of Staphylococcus aureus TUM22173

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Nevada, Reno


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: Streptomyces luteogriseus


ncbi_submitter: EMG


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_organism_name: Geobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Weeksellaceae bacterium


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_organism_name: Lysinibacillus sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Hospital Puerta del Mar


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_country: France

ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_assembly_name: YEF

ncbi_organism_name: Yersinia enterocolitica

ncbi_strain_identifiers: YEF

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Second Affliated Hospital of Kunming Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Actinoplanes sp. NPDC024001

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Gemmiger sp.

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Borreliella yangtzensis

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_assembly_name: IMG-taxon 2617270872 annotated assembly

ncbi_organism_name: Micromonospora krabiensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_organism_name: Yersinia rochesterensis

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: University of Washington


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Hungary

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yale School of Public Health


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Goettingen

ncbi_isolation_source: tomato rhizosphere

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Norway: Aas; Norwegian University of Life Sciences

ncbi_isolation_source: biogas reactor content

ncbi_organism_name: Coprothermobacter proteolyticus

ncbi_submitter: Norwegian University of Life Science


ncbi_assembly_name: freshwater MAG --- Ki1-2-7m_bin-861

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_submitter: University of Rhode Island


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: China

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri Shi06AH091

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_organism_name: Morganella morganii

ncbi_submitter: National Center for Microbiology - Institute of Health Carlos III


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_country: USA: TX

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Actinomyces graevenitzii

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Alberta

ncbi_isolation_source: wheat leaves showing bacterial leaf streak (BLS) symptoms caused by Xanthomonas translucens

ncbi_organism_name: Pantoea allii

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Candidatus Sumerlaeia bacterium

ncbi_submitter: University of Iowa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;c__Candidatus Sumerlaeia;x__unclassified Candidatus Sumerlaeia;s__Candidatus Sumerlaeia bacterium


ncbi_assembly_name: freshwater MAG --- MJ120827A_bin-570

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Lethbridge


ncbi_country: Russia: Altai

ncbi_isolation_source: shubat

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 329

ncbi_organism_name: Staphylococcus cohnii

ncbi_strain_identifiers: SNUC 2659

ncbi_submitter: University of Calgary


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: Canada: Prince Edward Island

ncbi_isolation_source: Imported/domestic retail Mussels

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_country: USA: IL

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of Colorado at Boulder


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Korean Collection for Type Culture, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology


ncbi_assembly_name: Rumen uncultured genome RUG10587

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Firmicutes bacterium AF36-3BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF36-3BH


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: central venous catheter (CVC)

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: aquatic

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: manubrium

ncbi_organism_name: Staphylococcus epidermidis NIHLM015

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-123

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Netherlands

ncbi_organism_name: Streptococcus suis 14636

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: DUM

ncbi_submitter: Cochin hospital


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Hospital-Room 1036; Sink

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Northern Arizona University


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Nanjing University


ncbi_country: Canada: Quebec city

ncbi_isolation_source: pus from armpit

ncbi_organism_name: Criibacterium bergeronii

ncbi_submitter: CHU de Quebec - Universite Laval


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Michigan


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 1; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG14285

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Seawater

ncbi_organism_name: Thioclava sp. L04-15

ncbi_submitter: Thioclava sp. L04-15 (MCCC 1A08421) is available from MCCC (Marine Culture Collection of China) (http://www.mccc.org.cn/).


ncbi_assembly_name: freshwater MAG --- Loc090721-8-6m_bin-0522

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Fusobacterium periodonticum


ncbi_country: Lithuania: Curonian Lagoon

ncbi_isolation_source: unialgal non-axenic culture; originally established from brackish water collected from Curonian Lagoon Lithuania in 2012

ncbi_organism_name: Aphanizomenon flos-aquae KM1D3_PB

ncbi_submitter: Oregon State University


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: White Oak River estuary; North Carolina; USA

ncbi_isolation_source: estuarine anaerobic sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stanford University


ncbi_country: Brazil: Continental slope off northeastern Brazil; 170 km from the coastline and 280 km to the north of the mouth of the Parnaiba River

ncbi_isolation_source: Sediment core

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: UFRJ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium RIFOXYA2_FULL_47_19


ncbi_isolation_source: Ground Turkey

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:r:-


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA3266

ncbi_submitter: University of Queensland


ncbi_submitter: Center for Microbial Communities


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Pus aspirate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Pseudomonas proteolytica

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Canada: Qubec

ncbi_isolation_source: Imported/domestic retail Oyster

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Humaya River; Adolfo Lopez Mateos dam

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_country: Romania

ncbi_isolation_source: mud volcano

ncbi_submitter: University of East Anglia


ncbi_country: USA

ncbi_isolation_source: gut

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: University of Alabama at Birmingham


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China: Guangzhou

ncbi_organism_name: Corynebacterium parakroppenstedtii

ncbi_submitter: The Second Clinical College, Guangzhou University of Chinese Medicine


ncbi_country: China: Qaidam Basin; Qinghai Province

ncbi_isolation_source: salt-lake sediment

ncbi_organism_name: Paraliobacillus quinghaiensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli OK1114

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Mesorhizobium sp. M0276

ncbi_submitter: Washington State University


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_strain_identifiers: acrnd

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Microbacterium phyllosphaerae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: United Kingdom: England

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_organism_name: Vibrio chagasii

ncbi_submitter: Ocean University of China


ncbi_country: China

ncbi_isolation_source: surface seawater from sea close to Xiamen; China

ncbi_organism_name: Idiomarina xiamenensis 10-D-4

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: National Research Council Canada


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_country: USA: Green Canyon; Gulf of Mexico

ncbi_isolation_source: 10 Gulf of Mexico water column samples before the DWH oil spill

ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: National Oceanic & Atmospheric Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_organism_name: Streptomyces sp. NPDC087525

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella sp. 125062

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: USA: Soudan Iron Mine; Minnesota

ncbi_isolation_source: brine fluids

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Michigan


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: Washington

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Amesiibacteriota;s__Candidatus Amesbacteria bacterium RIFCSPLOWO2_01_FULL_48_25


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Lachnoclostridium sp.

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium


ncbi_country: China: Quanzhou; Fujian; Quanzhou Hospital

ncbi_isolation_source: sputum

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: REALGENE


ncbi_assembly_name: freshwater MAG --- KR_bin-0961

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Bacillus sp. ISL-47

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ISL-47


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Japan:Shizuoka; Iwata

ncbi_isolation_source: Chinese cabbage field soil

ncbi_organism_name: Burkholderia sp. SFA1

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST) Hokkaido


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Salmonella sp. s55884

ncbi_submitter: Zhejiang university


ncbi_country: Canada: Vancouver

ncbi_isolation_source: stool of a ~3 month-old infant on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_country: United Kingdom: Worcestershire

ncbi_organism_name: Pseudomonas syringae group genomosp. 3

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: West Virginia

ncbi_organism_name: Mycoplasmopsis synoviae ATCC 25204

ncbi_submitter: University of Florida


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA:Las Vegas

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Queensland


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gemelliphila asaccharolytica


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Pseudomonas jessenii

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the First Affiliated Hospital,Zhejiang University School of Medicine


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guizhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Uruburuella suis

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China-Japan Friendship Hospital, Beijing, China.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bradyrhizobium oligotrophicum

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_organism_name: Neolewinella sp.

ncbi_submitter: University of East Anglia


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- Loc090519-4m_bin-585

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_submitter: University of Surrey


ncbi_organism_name: Enterococcus sp. DIV1288

ncbi_submitter: Broad Institute


ncbi_organism_name: Bartonella sp. AC331YNZD

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Blautia sp.


ncbi_submitter: LNCC


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Rhodoferax sp.


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Faeces


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: feces

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: University of Chicago


ncbi_isolation_source: activated sludge

ncbi_organism_name: Cupriavidus metallidurans

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Nautiliaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: NMRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni CG8486


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Rumen uncultured genome RUG14662

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae


ncbi_submitter: Faculdade de Medicina Veterinaria e Zootecnia de Botucatu

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_isolation_source: metal/plastic

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University of Queensland


ncbi_isolate: metabat2_pooled_hifiasm.1872 MAG

ncbi_organism_name: Lentisphaeria bacterium

ncbi_strain_identifiers: metabat2_pooled_hifiasm.1872 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: China

ncbi_isolation_source: 20 years wild ginseng rhizosphere soil

ncbi_organism_name: Variovorax fucosicus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Wenzhouxiangellaceae bacterium


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Wayne State University


ncbi_country: USA: New York State

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Cornell University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_assembly_name: CTDIVETGP

ncbi_organism_name: Clostridium tyrobutyricum DIVETGP

ncbi_strain_identifiers: DIVETGP

ncbi_submitter: UNIMIDIVET


ncbi_isolation_source: not provided

ncbi_organism_name: Streptococcus oralis


ncbi_submitter: Leon University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Shuttleworthella sp. MSX8B

ncbi_submitter: JCVI


ncbi_country: Argentina: Buenos Aires

ncbi_submitter: Universidad de Buenos Aires, CONICET


ncbi_country: USA: California; Los Angeles County

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: United Kingdom: Aberystwyth

ncbi_isolation_source: Laboratory reference strain

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Bath


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Monash University


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Halomonas kalidii

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Institutes of Biology and Medical Sciences


ncbi_country: France: Munster; Alsace

ncbi_organism_name: Borreliella garinii IPT104

ncbi_submitter: Animal Epidemiology Unit - INRA - Saint Genès Champanelle; CNR Borrelia - Pasteur Institute - Paris


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Dongiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_strain_identifiers: HN 9

ncbi_submitter: Shihezi University


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shenzhen University


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: Tang lab

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Marivita sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Arizona

ncbi_isolation_source: throat

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_submitter: Chinese center for disease control and prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Woeseiaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar 44:z4,z23:-


ncbi_submitter: Institute for Medical Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- Loclat_bin-18560

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sphingobacteriales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Distal colon

ncbi_organism_name: Parasutterella excrementihominis


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Human genome center at Shanghai


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Loc080925-5m_bin-0367

ncbi_organism_name: uncultured beta proteobacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Zhongshania sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Beijing University of Agriculture


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Department of Microbiology, Tokyo Metropolitan Institute of Public Health


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Japan: Nagano; Suwa

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_country: China: Shanxi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: United Kingdom: Gloucestershire

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in a breeding trial plot

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Brazil

ncbi_isolation_source: nodules

ncbi_organism_name: Bradyrhizobium campsiandrae

ncbi_strain_identifiers: INPA 384B

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: China: Jing Zi Habour; Weihai

ncbi_organism_name: Aquimarina algicola

ncbi_submitter: Shandong University at Weihai


ncbi_country: Japan:Tokushima-shi; Tokushima

ncbi_organism_name: Anaerocolumna chitinilytica

ncbi_strain_identifiers: CTTW

ncbi_submitter: Hirosaki University


ncbi_organism_name: Romboutsia ilealis


ncbi_country: Spain: Malaga

ncbi_isolation_source: Mango tissue

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Malaga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: USA: Chicago

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Burkholderiales bacterium


ncbi_country: China: Jiangxi provience

ncbi_isolation_source: intestinal content

ncbi_organism_name: Leucobacter sp. CX87

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_country: USA

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans B07Sm2

ncbi_submitter: New York University College of Dentistry


ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: James Cook University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Colon

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Usitatibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Shandong First Medical University


ncbi_organism_name: Modestobacter marinus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Williamsport; Loyalsock Creek

ncbi_isolation_source: freshwater creek

ncbi_organism_name: Pedobacter sandarakinus

ncbi_strain_identifiers: AMB

ncbi_submitter: Lycoming College


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0407

ncbi_submitter: Texas A&M University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Brazil: Belo Horizonte;Pampulha lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M04BS1

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Elusimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Lubbock


ncbi_organism_name: Salmonella bongori serovar 66:z39:-

ncbi_submitter: CDC


ncbi_organism_name: uncultured Fretibacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis EnGen0201

ncbi_submitter: Broad Institute


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: Yang zhou University


ncbi_country: Germany: Floodplain area  Unteres Odertal  watercourse  Bogengraben

ncbi_isolation_source: floodplain area

ncbi_organism_name: Novosphingobium sp. B 225

ncbi_submitter: Eisenbakterien Odertal


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: OH

ncbi_isolation_source: cilantro

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: SC


ncbi_isolation_source: plant environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Texas Tech University


ncbi_organism_name: Mycobacterium bohemicum DSM 44277

ncbi_submitter: URMITE


ncbi_organism_name: Streptomyces sp. NPDC056647

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Florida keys

ncbi_isolation_source: coral mucus

ncbi_organism_name: Dietzia sp. WMMA184

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Brevundimonas sp.


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site B

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolate: Pantoea sp. 111

ncbi_organism_name: Pantoea brenneri

ncbi_strain_identifiers: Pantoea sp. 111

ncbi_submitter: Elham Karimi


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: artisanal dairy product

ncbi_submitter: Danone Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei;sb__Lacticaseibacillus paracasei subsp. paracasei;x__Lacticaseibacillus paracasei subsp. paracasei Lpp17


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Azambacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;x__unclassified Candidatus Azambacteria;s__Candidatus Azambacteria bacterium


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Mucinivorans sp.

ncbi_submitter: China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG12225

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Shigella flexneri 1b

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Fibrobacterota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Drexel


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Parma


ncbi_organism_name: Porphyromonas pasteri

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Caldimonas sp. KR1-144

ncbi_submitter: Kyonggi university


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Xanthomonas axonopodis pv. patelii

ncbi_strain_identifiers: NCPPB 840

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas axonopodis;x__Xanthomonas axonopodis subcluster 9.2;x__Xanthomonas axonopodis pv. patelii


ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Texas

ncbi_isolation_source: respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: South Central

ncbi_isolation_source: Cattle hide

ncbi_submitter: Texas A&M


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Colombia: Antioquia

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Corporacion Para Investigaciones Biologicas


ncbi_organism_name: Spiroplasma mirum ATCC 29335

ncbi_submitter: Nanjing Normal University


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NRRL S-575

ncbi_strain_identifiers: NRRL S-575

ncbi_submitter: University of Illinois


ncbi_organism_name: Enterobacter sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Chr. Hansen A/S


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Streptomyces sp. ME18-1-4

ncbi_submitter: Oregon State University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: University of Tartu, Institute of Genomics


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_organism_name: Fuerstiella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaeromyxobacter sp. PSR-1

ncbi_submitter: Chiba University


ncbi_country: Turkey

ncbi_organism_name: Xanthomonas euvesicatoria


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolate: AOP25_C1_surf _bin _1

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: AOP25_C1_surf _bin _1

ncbi_submitter: Genoscope


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: subsurface gravel wet soil

ncbi_organism_name: Nocardiopsis deserti

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wildermuthiibacteriota;s__Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_01_FULL_49_22b


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Christensenella sp. UBA1252

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridium tyrobutyricum

ncbi_strain_identifiers: KCTC 5387

ncbi_submitter: KAIST


ncbi_country: South Korea: Jinju

ncbi_isolation_source: Vaginal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_organism_name: Mycoplasmopsis synoviae


ncbi_isolation_source: cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Mexico

ncbi_submitter: AstraZeneca


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Faecousia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: freshwater MAG --- Umea3_bin-3336

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Agroscope


ncbi_country: Lesotho

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA3267


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_isolate: Pseudomonas lini CIRM-BIA2854

ncbi_organism_name: Pseudomonas lini

ncbi_strain_identifiers: Pseudomonas lini CIRM-BIA2854

ncbi_submitter: INRAE


ncbi_organism_name: Escherichia coli S88

ncbi_submitter: Genoscope


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: SAR92 clade bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_assembly_name: freshwater MAG --- MJ130729B_bin-642

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Prevotella pallens

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium