ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Prostatic abscess

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chulalongkorn University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Germany

ncbi_genome_representation: full

ncbi_isolation_source: chick-box-paper

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Freie Universitaet Berlin


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_assembly_level: Complete Genome

ncbi_country: Italy

ncbi_isolation_source: pineapple

ncbi_organism_name: Furfurilactobacillus rossiae

ncbi_submitter: University of Bari


ncbi_country: Belgium

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: United States Department of Agriculture - ARS


gtdb_representative: t

ncbi_country: Canada: Hecate Strait

ncbi_isolation_source: dilbit-coated clay beads in seawater

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: National Research Council Canada


ncbi_assembly_level: Scaffold

ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: water

ncbi_organism_name: uncultured Chlorobiota bacterium

ncbi_submitter: CORNELL UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__environmental samples;s__uncultured Chlorobiota bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: Puerto Rico

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira sanjuanensis

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: Ontario

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_assembly_name: 220/00 clc bio denovo

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli O174:H21

ncbi_submitter: University Hospital Muenster


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: 0.2-1 micron

ncbi_organism_name: Vibrio tasmaniensis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolate: TSB Bead Pool 2

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: TSB Bead Pool 2

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Croceicoccus mobilis

ncbi_submitter: Tang lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Zoetis vaccine

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_country: Iran: Persian Gulf; Hormu

ncbi_isolation_source: marine surface water

ncbi_submitter: University of Tehran


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Pseudanabaena sp. M046S1SP1A06QC

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: blood

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_organism_name: Candidatus Merdibacter merdipullorum

ncbi_submitter: Quadram Institutte


ncbi_country: Denmark

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Statens Serum Institut


ncbi_organism_name: Streptomyces sp. NPDC005571

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_organism_name: Clostridium sp. D43t1_170807_H7

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia intermedia


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV110

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Colombia: Santa Marta Bay

ncbi_isolation_source: coral reef

ncbi_organism_name: Nitratireductor aquibiodomus

ncbi_submitter: National University of Colombia


ncbi_country: Ireland

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Australia

ncbi_isolation_source: Troups Creek Wetland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: National Institute of Genetics


ncbi_country: Chile: Puerto Octay

ncbi_isolation_source: Cankerous wood

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: INIA Rayentue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Anaerobutyricum stercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: plant root

ncbi_organism_name: Sinorhizobium fredii CCBAU 45436

ncbi_strain_identifiers: ccbau 45436

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Sinorhizobium/Ensifer group;g__Sinorhizobium;x__Sinorhizobium fredii group;s__Sinorhizobium fredii;x__Sinorhizobium fredii CCBAU 45436


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_assembly_level: Chromosome

ncbi_country: USA: Fayetteville; Arkansas

ncbi_isolation_source: sludge from a nitrification basin of a wastewater treatment plant grown in increasingly acidic conditions in an aerobic bioreactor

ncbi_submitter: USDA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Sichuan University


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella sp. K6-123-1

ncbi_submitter: Institute of Marine research


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Rhodospirillales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Helsinki


ncbi_organism_name: Thalassotalea euphylliae

ncbi_refseq_category: reference genome

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Microvirga sp.

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_strain_identifiers: CML 3

ncbi_submitter: University of Wyoming


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paraburkholderia strydomiana

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: uncultured Syntrophaceae bacterium


ncbi_organism_name: Pseudoduganella sp. RAF53_2

ncbi_submitter: CCRP


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: uncultured Sphingomonadaceae bacterium


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Actinosynnema sp. NPDC059797


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0589

ncbi_submitter: Broad Institute


ncbi_organism_name: Methanobacteriaceae archaeon

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Toronto

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Streptococcus sp. 2018WUSS126

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Paenibacillus xylanexedens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Rhodanobacter fulvus Jip2

ncbi_submitter: NIH


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Comamonas aquatica

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22533;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Animal Quarantine Service, MAFF


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: China

ncbi_isolation_source: field land

ncbi_organism_name: Rhodococcus ruber


ncbi_country: USA: Chicago; Illinois

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: marine sediment

ncbi_organism_name: Salinimicrobium nanhaiense

ncbi_submitter: Insititute of Oceanology, Chinese Academy of Sciences


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


gtdb_type_species_of_genus: t

ncbi_country: China: Guangzhou; Guangdong

ncbi_organism_name: Longirhabdus pacifica

ncbi_strain_identifiers: SCSIO 06110

ncbi_submitter: South China Sea Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Agromyces salentinus

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Washington


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 215

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 824

ncbi_submitter: University of Calgary


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: New Zealand

ncbi_isolation_source: low density polyethylene (LPDE) from waste management plant

ncbi_organism_name: Shewanella sp. SM34

ncbi_submitter: AgResearch


ncbi_country: Germany

ncbi_submitter: Karolinska Institute


ncbi_country: China: Hangzhou

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: zhejiang University


ncbi_organism_name: Odoribacter splanchnicus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiaceae bacterium


ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: commercial strain obtained from Novagen

ncbi_submitter: GlaxoSmithKline Vaccines


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Streptomyces termitum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: New Brunswick

ncbi_isolation_source: Imported/domestic retail Oyster

ncbi_organism_name: Vibrio antiquarius

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio antiquarius


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: Aalborg University


ncbi_country: China: Lhasa; Tibet

ncbi_isolation_source: gills

ncbi_organism_name: Deefgea salmonis

ncbi_submitter: Tibet Academy of Agricultural and Animal Husbandry Sciences


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Proteiniphilum sp. UBA5485

ncbi_submitter: University of Queensland


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Hydrotalea flava

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_assembly_name: Rumen uncultured genome RUG10037

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Marine fish farm

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_country: China: Shaanxi

ncbi_isolation_source: anal swab

ncbi_submitter: Northwest A&F University


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3043

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China: Shanghai

ncbi_organism_name: Acinetobacter sp. YH12106

ncbi_submitter: South China Agricultural University


ncbi_country: Malaysia

ncbi_isolation_source: seawater

ncbi_organism_name: Roseivirga seohaensis subsp. aquiponti

ncbi_submitter: FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Roseivirgaceae;g__Roseivirga;s__Roseivirga seohaensis;sb__Roseivirga seohaensis subsp. aquiponti


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Tunisia: Tunis

ncbi_isolation_source: Cotyledon

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: CBBC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Acidimicrobium ferrooxidans DSM 10331

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shenzhen

ncbi_organism_name: Olsenella sp. AM04-33

ncbi_submitter: BGI


ncbi_country: USA: Louisiana

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio tarriae

ncbi_submitter: CDC


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Streptomyces lavendulae subsp. lavendulae

ncbi_strain_identifiers: NRRL B-2775

ncbi_submitter: University of Illinois


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Streptomyces sp. NPDC056308


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Miltoncostaeaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Streptomyces sp. URMC 126

ncbi_strain_identifiers: URMC 126

ncbi_submitter: University of Rochester


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-0794

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Tunturiibacter psychrotolerans

ncbi_submitter: Rutgers University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Jura department

ncbi_isolation_source: udder

ncbi_organism_name: Mycobacterium uberis

ncbi_strain_identifiers: Jura

ncbi_submitter: Ecole Polytechnique Federale de Lausanne


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institute


ncbi_country: USA

ncbi_isolation_source: blood sample from patient with bacteremia

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CIG1770


ncbi_isolation_source: anammox sludge

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: East China of university of science and technolongy


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Yersinia pestis CMCC87001

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0011

ncbi_submitter: Broad Institute


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Geobacter sp. UBA4078

ncbi_submitter: University of Queensland


ncbi_country: USA: CA

ncbi_isolation_source: Raw Cream

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: Hong Kong: Chek Chau

ncbi_organism_name: Roseobacter sp. HKCCD7373

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: China: Wuhan

ncbi_isolation_source: seawater layers

ncbi_organism_name: Thalassospira povalilytica

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China: Sichuan

ncbi_isolation_source: dust from chicken farm

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_isolation_source: feces from veal calf

ncbi_submitter: USDA


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Sphingobacterium sp. HMSC13C05

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Belgium: Diepenbeek

ncbi_isolation_source: Root tissue

ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Hasselt University


ncbi_country: Spain

ncbi_organism_name: Arcobacter sp. CECT 8985

ncbi_strain_identifiers: CECT 8985

ncbi_submitter: Universitat Rovira i Virgili


ncbi_country: China: South China Sea

ncbi_organism_name: Streptomyces cacaoi

ncbi_submitter: Ocean University of China


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 222

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 3210

ncbi_submitter: University of Calgary


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Chromatiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paenibacillus sp. BT-177

ncbi_submitter: Yan'an University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: Softened Water

ncbi_organism_name: Mycobacteroides franklinii

ncbi_submitter: Uppsala University


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA7093

ncbi_submitter: University of Queensland


ncbi_country: Norway

ncbi_isolation_source: Exudate from ulcer

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Brazil: Sao Jose do Rio Preto

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: FAMERP


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolation_source: Pork

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Poland

ncbi_isolation_source: Processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: France

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_organism_name: Pseudomonas paraeruginosa PA7

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Burkholderiales bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: South Africa: Western Cape Province

ncbi_organism_name: Paraburkholderia podalyriae

ncbi_submitter: University of Pretoria


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ruminococcaceae bacterium UBA5579

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Atlantic Ocean

ncbi_isolation_source: water

ncbi_organism_name: Pseudoalteromonas sp. Angola-22

ncbi_submitter: Michigan Technological University


ncbi_organism_name: Streptomyces sp. SP18ES09

ncbi_submitter: Washington University in St. Louis


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella histicola


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Blood from newborn

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-2474

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: South Korea

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_country: Thailand

ncbi_isolation_source: Rectal

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Prevotella sp. CAG:279

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Switzerland

ncbi_isolation_source: cheese culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Brigham Young University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Pyramidobacter piscolens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Egypt: Wadi Natrun

ncbi_isolation_source: saline lake

ncbi_organism_name: Ectothiorhodospira variabilis

ncbi_strain_identifiers: WN 22

ncbi_submitter: Bellevue University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Sichuan

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Atribacter sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 2659

ncbi_submitter: Ghent University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: RADBOUD UNIVERSITY


ncbi_organism_name: Yersinia entomophaga

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Coprococcus sp.


ncbi_organism_name: Desulfamplus sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Sphingomonas albertensis

ncbi_submitter: Walloon Agricultural Research Centre


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Desulfitobacteriia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;c__Desulfitobacteriia;x__unclassified Desulfitobacteriia;s__Desulfitobacteriia bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Hungatella sp. SB206

ncbi_submitter: Forsyth Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:631

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:631


ncbi_country: Senegal: Dakar

ncbi_organism_name: Virgibacillus dakarensis

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Russia: Nizhny Novgorod

ncbi_isolation_source: milk

ncbi_organism_name: Delftia tsuruhatensis

ncbi_submitter: Nizhny Novgorod Research Veterinary Institute


ncbi_country: China: HeNan

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces dairy cow (Bos taurus)

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro;x__Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001587


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: activated sludge

ncbi_organism_name: Alcaligenes aquatilis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Xanthomonas citri pv. punicae

ncbi_submitter: University of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. punicae


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0369

ncbi_submitter: Broad Institute


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 10067A

ncbi_submitter: University of Exeter


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: The Red Sea

ncbi_organism_name: Sulfitobacter sp. KE29

ncbi_submitter: The Chinese University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG14316

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Mucilaginibacter sp. PAMB04168

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: China: Qinling

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B3780

ncbi_submitter: China Agricultural University


ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 163

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Kangiella sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Douglas Channel

ncbi_isolation_source: dilbit-coated clay beads in seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: National Research Council Canada


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Coal Oil Point; Santa Barbara; California

ncbi_isolation_source: Oil polluted marine water

ncbi_organism_name: Anaerolineales bacterium UBA3071

ncbi_submitter: University of Queensland


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Planctomycetes bacterium UBA2392

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium UBA2392


ncbi_country: China: Shandong

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_country: Canada: Vancouver; BC; UBC campus

ncbi_isolation_source: roots

ncbi_organism_name: Pseudomonas sp. PB101

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bowdeniella nasicola

ncbi_submitter: Center for Bioinformatics


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: Laboratory

ncbi_organism_name: Streptomyces clavuligerus

ncbi_submitter: John Innes Centre


ncbi_country: Saudi Arabia: Thuwal

ncbi_isolation_source: reverse osmosis membrane

ncbi_organism_name: Bacillus sp. RO2

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RO2


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Cornell University


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-finished water

ncbi_organism_name: Ralstonia sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Borehole near Beyelii Yar in Tomsk

ncbi_isolation_source: groundwater filtered on 0.22 m filters

ncbi_organism_name: Ignavibacterium sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Dichotomicrobium thermohalophilum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Janibacter limosus NBRC 16128

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: gut

ncbi_organism_name: Treponema sp.


ncbi_country: Switzerland

ncbi_submitter: University of Lausanne


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Tangfeifania sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the first affiliated hospital of wenzhou medical university


ncbi_country: USA: Reno; Nevada

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: Xanthomonas massiliensis

ncbi_organism_name: Xanthomonas massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Prevotella sp. CAG:279

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sydney


ncbi_organism_name: Rhizobiaceae bacterium


ncbi_country: Tunisia

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: ANSES


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas sp. HMSC057H01

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_submitter: NORHED grant


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_submitter: University of Oxford


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: catheter

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: New Zealand

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_organism_name: Effusibacillus lacus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: WA

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Vibrio echinoideorum

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Jiangxi

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter sp. YH16031

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Clostridium sulfidigenes


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: University of Bern


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Prescottella equi

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1402

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: South Korea:Sunchang

ncbi_organism_name: Sphingobacterium sp. SRCM116780

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_name: freshwater MAG --- AM3_bin-0987

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_country: Haiti

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CDC


ncbi_country: China: Guangdong

ncbi_isolation_source: anal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Shenzhen Dapeng New District Public Health Management and Service Center


ncbi_isolation_source: human gut

ncbi_organism_name: Barnesiella sp.

ncbi_submitter: NHGRI/NIH


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_submitter: Bioplatforms Australia


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Zavarzinia sp. CC-PAN008

ncbi_submitter: Nation Chung Hsing University


ncbi_organism_name: Marivivens sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Lepagella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterocloster sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Hyphomicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: McGill University


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: Myroides odoratimimus

ncbi_strain_identifiers: pgdne

ncbi_submitter: ICAR-National Institute of Biotic Stress Management, Raipur & Central Univ. of South Bihar, Gaya


ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Orlajensenia flava

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Caulobacteraceae bacterium


ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: uncultured Cyclobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: NNEfa 2881


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Washington University in Saint Louis


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: China

ncbi_isolation_source: healthy chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Brachyspira sp.


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_submitter: Sun-yat Sen University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: USDA ARS


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: Atlantis Massif Sediment

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium AH-259-L05


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-6025

ncbi_submitter: BILS


ncbi_country: USA

ncbi_isolation_source: Wound Left Shoulder NON OPERATIVE PRE INCISION

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: Japan

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Infectious Diseases, Kyorin University School of Medicine


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Mariprofundus ferrooxydans M34

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: IMG-taxon 2651870120 annotated assembly

ncbi_organism_name: Methylobacterium phyllostachyos

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Candidatus Anoxymicrobiaceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Geothermincolia;o__Candidatus Geothermincolales;f__Candidatus Anoxymicrobiaceae;x__unclassified Candidatus Anoxymicrobiaceae;s__Candidatus Anoxymicrobiaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas luteola

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: sediment

ncbi_organism_name: Christiangramia sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus TCH60


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Romania

ncbi_organism_name: Mycobacterium tuberculosis 2100HD

ncbi_submitter: Broad Institute


ncbi_organism_name: Burkholderia humptydooensis

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_isolation_source: oral cavity

ncbi_organism_name: Neisseria sp. oral taxon 020 str. F0370

ncbi_submitter: Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Neisseriales;f__Neisseriaceae;g__Neisseria;x__unclassified Neisseria;s__Neisseria sp. oral taxon 020;x__Neisseria sp. oral taxon 020 str. F0370


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Olleya sp. R77988

ncbi_submitter: Universiteit Gent


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Lachnospiraceae bacterium UBA5131

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridium perfringens


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_isolation_source: intestine of adult

ncbi_organism_name: Limosilactobacillus reuteri subsp. reuteri

ncbi_submitter: Shanghai Majorbio


ncbi_country: Taiwan

ncbi_isolation_source: shallow sea hydrothermal fluids

ncbi_organism_name: Nautiliales bacterium

ncbi_submitter: Ministry of Natural Resources, Third Institute of Oceanography


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Sudan: Khartoum; Military Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Arcicella sp.

ncbi_submitter: EPFL


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_isolation_source: not informed

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Universidade Federal do Para


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Merdimonas sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Japan: Tokyo

ncbi_isolation_source: Pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo Hospital


ncbi_isolation_source: Whirl pool

ncbi_organism_name: Cupriavidus gilardii

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H27761

ncbi_submitter: Broad Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Muribaculum sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Norway

ncbi_isolation_source: gut

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Elanco Animal Health


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_submitter: Korea Zoonosis Research Institute


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_organism_name: Comamonadaceae bacterium CG2_30_59_20

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Guangdong Provincial Hospital of Traditional Chinese Medicine


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Laribacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Paraburkholderia sp. Kb1A

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: FC

ncbi_submitter: INRA


ncbi_country: India: Gulf of Kutch

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Candidatus Kutchimonas denitrificans

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University

ncbi_taxonomy: d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Kutchimonas;s__Candidatus Kutchimonas denitrificans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Kutchimonas;s__Candidatus Kutchimonas denitrificans


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Argentina: Rosario

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: Ghana: Accra

ncbi_isolation_source: Livestock farm

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Cambodia

ncbi_isolation_source: kidney

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_assembly_name: IMG-taxon 2671180220 annotated assembly

ncbi_organism_name: Acinetobacter marinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bergeyella sp.


ncbi_assembly_name: freshwater MAG --- Umea_bin-00670

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: SampleS

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides sp. Marseille-P3160

ncbi_submitter: URMITE


ncbi_assembly_name: JGI assembly

ncbi_organism_name: Candidatus Kryptobacter tengchongensis

ncbi_submitter: DOE - Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Kryptoniota;c__;o__;f__;g__Candidatus Kryptobacter;s__Candidatus Kryptobacter tengchongensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;g__Candidatus Kryptobacter;s__Candidatus Kryptobacter tengchongensis


ncbi_organism_name: uncultured Sporosarcina sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Argentina: Buenos Aires; a tawn park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. AR2-1

ncbi_submitter: University of Bialystok

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. AR2-1


ncbi_country: USA:New York;Manhattan

ncbi_isolation_source: Xenic protist cell culture

ncbi_organism_name: Pseudooceanicola nitratireducens

ncbi_submitter: American Museum of Natural History


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus SJOS6071

ncbi_submitter: Broad Institute


ncbi_organism_name: Prevotella histicola

ncbi_submitter: University of Michigan


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Haemaphysalis qinghaiensis


ncbi_organism_name: Acidocella sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Clostridium stratigraminis

ncbi_strain_identifiers: WILCCON 0185

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: Streptomyces sp. NPDC006530

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Flavobacterium sp. RSB2_4_14

ncbi_submitter: Hannam University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_submitter: Universidad de Leon


ncbi_country: Germany: Goettingen

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Bartonella rochalimae

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Clavibacter tessellarius

ncbi_submitter: University of Tehran


ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Burkina Faso

ncbi_isolation_source: skin wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU mediterranee infection


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Postoperative maxillary cyst

ncbi_organism_name: Streptococcus constellatus

ncbi_strain_identifiers: KCOM 1039

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_organism_name: Mycobacterium tuberculosis str. Haarlem

ncbi_strain_identifiers: Haarlem

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis str. Haarlem


ncbi_organism_name: Salinicoccus roseus

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Other

ncbi_strain_identifiers: MRSA


ncbi_country: USA: Denver; CO

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Lausanne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Argentina: Escobar

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: USA: MD

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: Qipengyuania profunda

ncbi_submitter: Seoul National University


ncbi_organism_name: Amnibacterium kyonggiense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Anaerobic Digestion Sludge

ncbi_organism_name: Cloacimonetes bacterium UBA1060

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Cloacimonetes bacterium UBA1060


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Pseudomonas sp. LM13

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_country: Brazil: Sao Jose do Rio Preto

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: HBSJRP 9

ncbi_submitter: University of Sao Paulo


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: MALAYSIA GENOME INSTITUTE


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-1383

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Zurich


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: broncho alveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Yaounde 1


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Arcobacter cryaerophilus gv. pseudocryaerophilus

ncbi_strain_identifiers: Kiel 2759

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Coprococcus comes

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptacidiphilus alkalitolerans

ncbi_submitter: BioPS Co., Ltd.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: christian Medical College


ncbi_organism_name: Nocardia rhizosphaerihabitans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Angelakisella massiliensis

ncbi_submitter: EMG


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: China: Hangzhou; Zhejiang

ncbi_isolation_source: liver abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: China: Nanjing

ncbi_organism_name: Salmonella bongori

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_isolation_source: marine

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 459

ncbi_submitter: SC


ncbi_organism_name: Candidatus Microsaccharimonas sp.

ncbi_submitter: Monash University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Microsaccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Microsaccharimonas;x__unclassified Candidatus Microsaccharimonas;s__Candidatus Microsaccharimonas sp.


ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_country: China: Jiangxi

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_country: India

ncbi_organism_name: Rothia kristinae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Shewanella algicola

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Ohio

ncbi_submitter: JCVI


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter sp. YH12096

ncbi_submitter: South China Agricultural University


ncbi_country: French Guiana: Petit saut

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: LAMPROsp

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_country: Russia: Habarovsk

ncbi_isolation_source: stomach of patient with gastric cancer

ncbi_organism_name: Helicobacter pylori H13-1

ncbi_submitter: Scientific Research Institute of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Panama: Bocas del Toro

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: University of California, Davis


ncbi_organism_name: Streptomyces ruber

ncbi_strain_identifiers: NRRL ISP-5378

ncbi_submitter: University of Illinois


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-138

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Germany

ncbi_organism_name: Vibrio cincinnatiensis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Japan

ncbi_isolation_source: spoiled sake

ncbi_organism_name: Fructilactobacillus fructivorans

ncbi_submitter: Shanghai Majorbio

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_assembly_name: IMG-taxon 2599185176 annotated assembly

ncbi_organism_name: Desulfurella multipotens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: New York City

ncbi_isolation_source: biliary fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Firmicutes bacterium CAG:212

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:212


ncbi_organism_name: Candidatus Bipolaricaulaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;x__unclassified Candidatus Bipolaricaulaceae;s__Candidatus Bipolaricaulaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institute of Biotechnology


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Lentimicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Peribacillus butanolivorans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Butyricimonas virosa


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Denmark

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_country: USA: Tennessee;Knoxville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_country: India: Iewduh; Shillong

ncbi_isolation_source: Retail goat meat

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: Devosiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Opitutaceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Sichuan University


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: Ecuador: Borbon

ncbi_isolation_source: human stool

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: La Porte; Indiana

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Max Planck Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Ireland

ncbi_isolation_source: urine

ncbi_submitter: Swansea University


ncbi_country: USA: Montoursville

ncbi_isolation_source: Freshwater creek

ncbi_organism_name: Mucilaginibacter sp. JRF

ncbi_strain_identifiers: JRF

ncbi_submitter: Lycoming College


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: SAR116 cluster bacterium AG-390-L20

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium AG-390-L20


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-3290

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: (MIX) marine epipelagic mixed layer

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: unknown

ncbi_organism_name: Tamlana algarum

ncbi_submitter: marine college, shandong university


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Anhui

ncbi_isolation_source: Pleural effusion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Serratia sp. SSNIH2

ncbi_submitter: NIH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. SSNIH2


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: sichuan university


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Switzerland: St. Gallen

ncbi_submitter: Center for Laboratory Medicine


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: AIMST University


ncbi_country: China

ncbi_isolation_source: Chinese pickle

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_submitter: MRSN BI Team


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil

ncbi_organism_name: Microvirga sp. STS02

ncbi_submitter: seoul women's university


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Somalia

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universidade de Aveiro