ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia anthina

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus pseudoxylosus


ncbi_assembly_level: Contig

ncbi_organism_name: Prevotella histicola

ncbi_submitter: Hospital Sirio-Libanes


ncbi_strain_identifiers: DH-BiRr;UAM

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_organism_name: Neisseria sp. P0016.S008

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Streptomyces hygroscopicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


gtdb_representative: t

ncbi_organism_name: Niabella sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bacillus sp. B38

ncbi_submitter: Center of Biotechnology of Borj Cedria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. B38


ncbi_organism_name: Halanaerobiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Denmark

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_organism_name: Legionella sainthelensi

ncbi_submitter: Institute of Infection, Immunity and Inflammation


ncbi_isolation_source: coastal sediment

ncbi_organism_name: Aestuariibaculum marinum

ncbi_refseq_category: reference genome

ncbi_submitter: Zhejiang University

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_submitter: SRCAMB


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_organism_name: Roseomonas rosulenta

ncbi_submitter: Mokwon University, Korea


ncbi_isolation_source: murine gut

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Queensland


ncbi_country: Russia: South Urals; near Lake Karachai

ncbi_isolation_source: Groundwater near Lake Karachai (Russia)

ncbi_organism_name: Pollutimonas nitritireducens

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Norway

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Synergistales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Finland

ncbi_isolation_source: wheat

ncbi_organism_name: Weissella confusa

ncbi_submitter: University of Saskatchewan


ncbi_assembly_level: Complete Genome

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Microdon myrmicae


ncbi_organism_name: Candidatus Ruminococcus gallistercoris

ncbi_submitter: Quadram Institutte


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: skin swab cheek

ncbi_organism_name: Corynebacterium sp. P4-C1

ncbi_submitter: Aarhus University


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UC San Diego


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: IMG-taxon 2596583585 annotated assembly

ncbi_organism_name: Paenimyroides marinum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Atopobiaceae bacterium UBA4299

ncbi_submitter: University of Queensland


ncbi_organism_name: Kandleria sp. UBA4218


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-0470

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universite Laval


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG14615

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_submitter: Uppsala University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Bifidobacterium angulatum

ncbi_submitter: EMG


ncbi_organism_name: Pedococcus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacteroides cutis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: China: Beijing

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Germany: Aachen

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Escherichia sp. DSM 109009

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22688;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Russia: Vladivostok

ncbi_isolation_source: Myodes rufocanus

ncbi_submitter: N.F.Gamaleya Research Center for Epidemiology and Microbiology


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Mahidol University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Aureimonas sp. Leaf454

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Antarctica: Horseshoe Island

ncbi_organism_name: Streptomyces sp. H39-C1

ncbi_submitter: Ondokuz Mayis University


ncbi_assembly_name: Rumen uncultured genome RUG12412

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EBI


ncbi_organism_name: Candidatus Geohabitans tengchongensis

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Humicultoraceae;g__Candidatus Geohabitans;s__Candidatus Geohabitans tengchongensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Humicultoraceae;g__Candidatus Geohabitans;s__Candidatus Geohabitans tengchongensis


ncbi_country: India: Pune

ncbi_isolation_source: urine

ncbi_submitter: University of Hyderabad


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Region Zealand


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: wound

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Copenhagen University Hospital - Rigshospitalet


ncbi_country: Singapore

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Singapore Streptococcus agalactiae working group


ncbi_organism_name: Pantoea sp. JKS000250

ncbi_submitter: DOE Joint Genome Institute


gtdb_type_species_of_genus: t

ncbi_country: Cambodia:Phnom Penh

ncbi_isolation_source: sewage water

ncbi_organism_name: Phnomibacter ginsenosidimutans

ncbi_submitter: Hankyong National University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ureaplasma sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belgium: Ghent

ncbi_isolation_source: top soil

ncbi_organism_name: Burkholderia sp. R-69980

ncbi_submitter: LM-UGent


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_assembly_name: E.coli isolate

ncbi_country: Switzerland

ncbi_isolation_source: ob/ob mice

ncbi_organism_name: Escherichia coli M8

ncbi_submitter: NIHS


ncbi_organism_name: Achromobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Georgia: Tbilisi

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Farlow Scientific Consulting


ncbi_organism_name: Brevibacterium linens ATCC 9172

ncbi_strain_identifiers: ATCC 9172

ncbi_submitter: Signature Science, LLC


ncbi_country: Egypt: New Valley; Kharga

ncbi_isolation_source: root nodules

ncbi_organism_name: Klebsiella variicola

ncbi_strain_identifiers: FR 96

ncbi_submitter: msa univeristy


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Rat

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: The University of Sydney


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolate: Strain C

ncbi_strain_identifiers: Strain C

ncbi_submitter: Johannes Gutenberg-University Mainz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Shikimatogenerans;s__Candidatus Shikimatogenerans bostrichidophilus


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus infantis

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_organism_name: Phocaeicola coprocola


ncbi_organism_name: Streptomyces sp. NPDC003023

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. SAL00302

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: surface water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: USA

ncbi_submitter: FDA


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Veillonellaceae bacterium


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_level: Chromosome

ncbi_isolation_source: lab strain

ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: Sterne 34F2

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Pyrinomonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_country: Australia: Melbourne

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: ECO 016

ncbi_submitter: Monash University


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Anaerotruncus rubiinfantis

ncbi_submitter: URMITE


ncbi_assembly_name: freshwater MAG --- YR2_bin-0300

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: BILS


ncbi_country: Germany

ncbi_isolation_source: Gut

ncbi_strain_identifiers: Isolate-036 (Harlan)

ncbi_submitter: UniKlinik RWTH Aachen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-036 (Harlan)


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: Blood culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Methylorubrum aminovorans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Portland State University


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: Bioreactor mimicking brackish/coastal conditions

ncbi_organism_name: Candidatus Scalindua rubra

ncbi_submitter: radboud university nijmegen

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__Candidatus Scalindua rubra

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__Candidatus Scalindua rubra


ncbi_country: Japan: Oita

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: Chile

ncbi_organism_name: Campylobacter sp. CFSAN093227

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Nanosynbacter sp.

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;x__unclassified Candidatus Nanosynbacter;s__Candidatus Nanosynbacter sp.


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Control Grass (No Manure)

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: GC T1 SC CEF 3

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolate: Clostridium paraputrificum

ncbi_isolation_source: Preterm infant faecal sample

ncbi_organism_name: Clostridium paraputrificum

ncbi_strain_identifiers: LH141;Clostridium paraputrificum

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Urinary Tract Infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Australia

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter baylyi;x__Acinetobacter baylyi DSM 14961 = CIP 107474


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Lactobacillus jensenii


ncbi_country: Brazil: Recife

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aggeu Magalhaes Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: plant matter [ENVO:01001121]

ncbi_organism_name: Pantoea sp. Psp39-30

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Arkansas

ncbi_isolation_source: hot spring

ncbi_organism_name: Thermoanaerobaculum aquaticum

ncbi_submitter: University of Oklahoma


ncbi_country: USA: California

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Southern California


ncbi_submitter: Gennova Biopharmaceuticals Ltd


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter hepaticus ATCC 51449

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Alicyclobacillus kakegawensis NBRC 103104

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Sporomusa sphaeroides

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Thailand

ncbi_organism_name: Acinetobacter sp. KU 013TH

ncbi_strain_identifiers: KU 013TH

ncbi_submitter: Kasetsart University


ncbi_submitter: UK Health Security Agency


ncbi_country: Viet Nam:Thai Binh

ncbi_isolation_source: human stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Osaka Institute of Public Health


ncbi_organism_name: Gallionella sp.

ncbi_submitter: Rutgers University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis;x__Bacillus subtilis subsp. subtilis str. RO-NN-1


ncbi_assembly_name: freshwater MAG --- LaPlata-7m-b_bin-074

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: BILS


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_isolation_source: milk

ncbi_submitter: University of queensland


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Ireland

ncbi_isolation_source: Cattle/Water

ncbi_submitter: University College Dublin


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_submitter: University of Leeds


ncbi_country: Oman

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_isolation_source: Proximal colon


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W15951

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Poland: Lublin

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: sputum

ncbi_submitter: Jinan University


ncbi_country: China: Fujian

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfomonile tiedjei

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Termitinemataceae bacterium

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Thiohalophilus sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: KU Leuven


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_isolate: AOP42_A2_surf _bin _25

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP42_A2_surf _bin _25

ncbi_submitter: Genoscope


ncbi_organism_name: Amycolatopsis sp. NPDC057786

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Rhodocyclaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Polyangium sp.


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Caulobacterales bacterium


ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Ideonella sp.

ncbi_submitter: EPFL


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: uncultured Thalassobaculaceae bacterium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: Chirstian Medical College


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: South Korea

ncbi_isolation_source: Chungkukjang

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Dankook University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Infection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_isolation_source: cold seep

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Michigan

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Michigan


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Dorea formicigenerans


ncbi_country: China: Ya an

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Yangzhou University


ncbi_assembly_name: freshwater MAG --- Umea_bin-06482

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: India

ncbi_isolation_source: nosocomial

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: wound

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_organism_name: Smithella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: University of Saskatchewan


ncbi_country: Italy: Pisa

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Dialister succinatiphilus


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_organism_name: Pseudomonas marginalis

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_organism_name: Bacillus anthracis str. CNEVA-9066

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. CNEVA-9066


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: City University of Hong Kong


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Actinomadura keratinilytica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_submitter: Yangzhou University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Rothia dentocariosa M567

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Salmonella enterica

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: NARIC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_organism_name: Shewanella sp. FJAT-51649

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 321

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: SNUC 2140

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudomonas sp. PvP006

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin N1.4

ncbi_isolation_source: groundwater

ncbi_organism_name: Cellulomonas sp.

ncbi_strain_identifiers: bin N1.4

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_organism_name: Streptomyces sp. ME08-AFT2

ncbi_submitter: Oregon State University


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Syntrophaceae bacterium UBA4054

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Nesterenkonia sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: Hong Kong

ncbi_isolation_source: Stanley WWTPs_2 WWTPs effluent

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Massey University


ncbi_country: Philippines: Marinduque

ncbi_isolation_source: soil sample

ncbi_organism_name: Streptomyces sp. A1-5

ncbi_submitter: University of Warwick


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-257

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-257


ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Alloprevotella sp.


ncbi_country: USA: MS

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR3862

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_assembly_name: freshwater MAG --- Umea3_bin-2224

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Syntrophales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Nantong Hospital 3 of Nantong University


ncbi_country: USA: Atlanta; GA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Emory University


ncbi_country: Thailand

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany

ncbi_isolation_source: sputum

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycolicibacterium;s__Mycolicibacterium holsaticum;x__Mycolicibacterium holsaticum DSM 44478 = JCM 12374


ncbi_country: USA: New York

ncbi_isolation_source: cystic fibrosis isolate

ncbi_submitter: AstraZeneca


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal University of Uberlandia


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: hand

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: UNESP-FCAV


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Bacteroides bouchesdurhonensis

ncbi_submitter: URMITE


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Staphylococcus aureus W45421

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_isolation_source: feces; 1 single-cell amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: bioBiome, Inc.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Krasnodar Krai; Kuban

ncbi_isolation_source: winter wheat; rhizoplane

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Kazan Federal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Flavonifractor sp.


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Chlamydia crocodili

ncbi_submitter: Mahidol University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Rhodococcus sp. NPDC060084

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NPDC060084


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Bradyrhizobium sp. HKCCYLRH3073

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Akkermansia sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Slovenia

ncbi_organism_name: Helicobacter colisuis

ncbi_submitter: Veterinary Faculty


ncbi_assembly_name: Rumen uncultured genome RUG11165

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Environmental Microbiology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: respiratory

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Russia: Penza region

ncbi_isolation_source: Buckweat porridge

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Eubacterium ventriosum ATCC 27560

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mesorhizobium sp. M0601

ncbi_submitter: Washington State University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacteroides caccae


ncbi_isolation_source: not known

ncbi_organism_name: Vibrio cholerae


ncbi_organism_name: Lapillicoccus sp.

ncbi_submitter: Zhejiang University


ncbi_country: France: Bordeaux

ncbi_isolation_source: stool

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institut Pasteur Montevideo


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Pusillimonas sp. UBA6240

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: nodule

ncbi_organism_name: Pseudomonas sp. REP124

ncbi_submitter: UMCS


ncbi_isolation_source: metagenome

ncbi_organism_name: Succinivibrio dextrinosolvens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: soil

ncbi_organism_name: Caballeronia novacaledonica

ncbi_submitter: Department of Engineering, Graduate School of Integrated Science and Technology, Shizuoka University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Faeces


ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: University of Montana


ncbi_organism_name: Roseibium sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: Tissues

ncbi_organism_name: Staphylococcus aureus 09S00475

ncbi_submitter: Broad Institute


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: bulk tank milk

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KP BT2

ncbi_submitter: UNICAMP


ncbi_country: Canada: Alberta

ncbi_isolation_source: Culture Media

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1271


ncbi_country: USA: Washington DC

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_organism_name: Niallia sp. Sow4_A1

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Russia

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_organism_name: Senegalimassilia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: France: Paris

ncbi_isolation_source: Bronchial aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CHU Bichat


ncbi_organism_name: Phocaeicola vulgatus ATCC 8482

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola vulgatus;x__Phocaeicola vulgatus ATCC 8482


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Fusobacterium mortiferum

ncbi_submitter: EMG


ncbi_country: France: Provence-Alpes-Cote d Azur; Chateaurenard

ncbi_isolation_source: bulk soil

ncbi_organism_name: Pseudomonas chlororaphis subsp. piscium

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. piscium


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: CAU


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Tissierellaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_country: USA: Nebraska

ncbi_submitter: University of Nebraska Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Komagataeibacter saccharivorans

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Sphingobacterium siyangense

ncbi_submitter: Universite Paris Saclay


ncbi_isolation_source: Herd 108

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 429

ncbi_submitter: University of Calgary


ncbi_isolation_source: vagina

ncbi_organism_name: Gardnerella vaginalis JCP7276

ncbi_submitter: Washington University


ncbi_country: Spain: Madrid

ncbi_organism_name: Escherichia coli

ncbi_submitter: IRYCIS


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Sweden

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Orebro University


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Corynebacterium sp. DNF00584

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Xenococcaceae cyanobacterium MO_207.B15

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University College Cork


ncbi_organism_name: Streptomyces kronopolitis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Boston; MA

ncbi_isolation_source: BLOOD CULTURE

ncbi_organism_name: Escherichia coli BIDMC 49a

ncbi_strain_identifiers: BIDMC 49a

ncbi_submitter: Broad Institute


ncbi_country: Thailand: Lat Phrao

ncbi_isolation_source: fresh seafood sold at markets and supermarkets located in Bangkok; Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Taiwan

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Consortium of Clinical Bacterial Genomics


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Gluconobacter kondonii

ncbi_submitter: Cornell University


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Spain: Santander

ncbi_isolation_source: Cabrales cheese

ncbi_organism_name: Tetragenococcus koreensis

ncbi_submitter: Institute of Biomedicine and Biotechnology of Cantabria (IBBTEC), Intergenomics group


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Syntrophomonas sp. UBA3954

ncbi_submitter: University of Queensland


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Greene County; Ohio

ncbi_isolation_source: groundwater well

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium Greene0416_39


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Hawaii Island

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: HIMY

ncbi_submitter: University of California Merced

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_isolation_source: skin

ncbi_organism_name: Acinetobacter baumannii 6014059

ncbi_submitter: WUGSC


ncbi_organism_name: uncultured Erysipelotrichales bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Ramlibacter sp. AN1015

ncbi_submitter: Hankyong National University


ncbi_organism_name: Microbacterium sp. BE35

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. C3237

ncbi_submitter: Sichuan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Kasetsart University


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Aerophobota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aerophobota;s__Candidatus Aerophobota bacterium


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Virgibacillus pantothenticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: bone infection of foot

ncbi_submitter: Karolinska Institutet


ncbi_country: China: Yunfu; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: South china normal university


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_submitter: sichuan university


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_country: Brazil: Minas_Gerais_1

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_country: Japan

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Harvard T.H. Chan School of Public Health


ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_isolate: Human

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Human

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_country: China:Guangdong Province; Dinghushan Biosphere Reserve

ncbi_isolation_source: forest soil

ncbi_organism_name: Trinickia acidisoli

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Haikou

ncbi_isolation_source: Haikou Guilin Ocean Economic Development Zone

ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: Chinese Academy Of Agricultural Sciences


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Tepidisphaerales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Dolichospermum circinale G_DOLI

ncbi_submitter: University of Utah


ncbi_organism_name: Duncaniella muris


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Southern California


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pantoea sp. B9002

ncbi_submitter: Wageningen University & Research


ncbi_assembly_name: freshwater MAG --- MJ110629A_bin-082

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_country: USA: MI

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pisa


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Leptospira interrogans serovar Bataviae

ncbi_submitter: Chulalongkorn University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: IMG-taxon 2599185309 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC49-2

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Thioalkalivibrio sp. ALgr3

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Switzerland: St. Gallen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Laboratory Medicine


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: EMG


ncbi_country: Kenya: Nairobi

ncbi_submitter: Makerere University


ncbi_isolation_source: host s whole body

ncbi_organism_name: Rickettsia endosymbiont of Oedothorax gibbosus

ncbi_submitter: University of Vienna


ncbi_country: Somalia

ncbi_isolation_source: fermented camel milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Brigham Young University


ncbi_isolation_source: soil

ncbi_organism_name: Neobacillus novalis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Pseudidiomarina fusca

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactiplantibacillus carotarum

ncbi_submitter: UANTW


ncbi_country: USA: Hibbing; MN

ncbi_organism_name: Pseudomonas kilonensis

ncbi_strain_identifiers: PD 31


ncbi_isolation_source: sputum

ncbi_organism_name: Neisseria sp. HMSC064F04

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: marine

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Winogradskyella arenosi

ncbi_strain_identifiers: CECT 7958

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Desulfovibrio sp. UBA1335


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Desulfosporosinus sp.


ncbi_country: Australia

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: USAMRIID


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Turkey: Sivas

ncbi_isolation_source: Fish Farm

ncbi_organism_name: Pseudomonas sp. P116

ncbi_submitter: Erciyes University


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Escherichia coli

ncbi_submitter: WRAIR-Africa


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Chile: Los lagos; Porcelana Hot Spring

ncbi_isolation_source: Porcelana 58 C degree phototrophic mat

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroides sp. HPS0048

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: paddy soil

ncbi_organism_name: Geothrix sp. SG200

ncbi_submitter: Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Italy

ncbi_isolation_source: Fishery products

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV144

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_submitter: SC


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Peribacillus frigoritolerans


ncbi_organism_name: Alkalibacillus flavidus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_isolate: AOP42_E1_surf _bin _4

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: AOP42_E1_surf _bin _4

ncbi_submitter: Genoscope


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tongji University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: brackish water from 150 m depth

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Kluyvera sp. M-M157-B

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Segatella copri


ncbi_organism_name: Alkalihalophilus marmarensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Tift Co.; GA

ncbi_isolation_source: adult tobacco thrip

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: Kvitko Lab


ncbi_organism_name: Roseivirga sp.

ncbi_submitter: University of East Anglia


ncbi_country: Czech Republic: Rimov reservoir

ncbi_isolation_source: freshwater reservoir; 30 m depth

ncbi_organism_name: Planctomycetota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus xiaochunlingii

ncbi_submitter: Loyola University Chicago


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Calgary


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus stratosphericus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Yunnan

ncbi_organism_name: Rickettsia rhipicephali

ncbi_strain_identifiers: EH

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Christian Medical College


ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_organism_name: Acidimicrobiia bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: PatientO

ncbi_submitter: California Department of Public Health


ncbi_country: China: Jiangxi

ncbi_organism_name: Acinetobacter sp. YH12230

ncbi_submitter: South China Agricultural University


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Litorivicinaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Bacteroides zhangwenhongii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: France: Marseille

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Aix Marseille univesity


ncbi_organism_name: Bacteroides ovatus CL02T12C04

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Peru

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR5880

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG12260

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succiniclasticum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Protaetiibacter sp.

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- I3b_bin-220

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Elstera sp.

ncbi_submitter: BILS


ncbi_country: China: Henan

ncbi_isolation_source: patient

ncbi_organism_name: Brucella melitensis bv. 1

ncbi_submitter: National Institute for Communicable Disease Control & Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Universidad de Leon


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Mogibacterium diversum

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Parvibacter caecicola


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EBI


ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__environmental samples;s__uncultured Gastranaerophilales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Cornell University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycolicibacter algericus DSM 45454

ncbi_submitter: San Raffaele Scientific Institute


ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S030_03996

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Pooled soil sample collected from floor of sheep farm

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Poland: Jaworzno

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: lake water

ncbi_organism_name: Oligoflexales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Traditional Brie

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Brigham Young University


ncbi_isolation_source: terrestrial

ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: Australia: Melbourne

ncbi_isolation_source: feces

ncbi_submitter: Biomedicine Discovery Institute


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Pantoea sp.


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: University of Calgary


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Candidatus Tisiphia;x__unclassified Candidatus Tisiphia;s__Candidatus Tisiphia endosymbiont of Piscicola geometra


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Acutalibacter muris


ncbi_country: Brazil

ncbi_isolation_source: biological fluid or tissue

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV107

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_name: IMG-taxon 2582580746 annotated assembly

ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22702;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: College of Basic Medical Science


ncbi_organism_name: Cardiobacterium hominis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Brown University


ncbi_country: USA

ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Epulonipiscium;x__environmental samples;s__uncultured Candidatus Epulonipiscium sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Algimonas sp.


ncbi_organism_name: uncultured Syntrophus sp.


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_organism_name: uncultured Dechloromonas sp.


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_submitter: Okayama University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur de la Guadeloupe


ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: China: Guangdong; Shenzhen; Shenzhen coast

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Graduate School at Shenzhen, Tsinghua University


ncbi_country: Colombia: Bogota

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: Urinary tract infection

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus WAMC6060

ncbi_submitter: Broad Institute


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Sphingomonas sp. 1F27F7B

ncbi_submitter: University of Trento


ncbi_country: Denmark: Livoe; old tree

ncbi_organism_name: Streptomyces sp. NBC_01239

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: Nitrosopumilus sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Russia: Yessentuki

ncbi_isolation_source: subsurface water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Pacific Ocean

ncbi_isolation_source: 300 m depth seawater

ncbi_organism_name: Blastomonas fulva

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Pseudomonas amygdali pv. aesculi

ncbi_strain_identifiers: ICMP 8947

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. aesculi


ncbi_organism_name: uncultured Conexibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: jejunum

ncbi_organism_name: Collinsella ihumii

ncbi_submitter: Quadram Institutte


ncbi_country: USA: OR

ncbi_isolation_source: Ground Beef

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Rhodobiaceae bacterium UBA6778

ncbi_submitter: University of Queensland


ncbi_organism_name: Achromobacter dolens

ncbi_submitter: Guangxi University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_country: Australia: Adelaide Hills; SA

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Ares Genetics GmbH


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_submitter: SC


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG14740

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: metagenome

ncbi_organism_name: Mycolicibacterium thermoresistibile

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_name: IMG-taxon 2616644817 annotated assembly

ncbi_organism_name: Alkalibacterium gilvum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE2

ncbi_isolation_source: lake water

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Los Angeles

ncbi_isolation_source: seawater

ncbi_organism_name: Roseibium sp. Sym1

ncbi_submitter: University of Southern California


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Northwestern University


ncbi_country: Argentina

ncbi_isolation_source: urine

ncbi_submitter: Universite Paris Sud


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2690316367 annotated assembly

ncbi_organism_name: Paenibacillus sp. GP183


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Geodermatophilaceae bacterium

ncbi_submitter: Monash University


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: Children's Hospital of Philadelphia