ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Cote d Ivoire: Africa

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: NRRL BD-148


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: USA: Nebraska

ncbi_isolation_source: potato tuber

ncbi_organism_name: Streptomyces caniscabiei

ncbi_submitter: USDA ARS


ncbi_assembly_level: Contig

ncbi_country: Zimbabwe

ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: NCPPB 702

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Brazil

ncbi_isolation_source: chicken carcass (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_assembly_level: Complete Genome

ncbi_submitter: University of Bern


ncbi_organism_name: Kocuria flava

ncbi_submitter: Institute of science and technology for advance studies & research (ISTAR)


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


gtdb_representative: t

ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_country: China

ncbi_isolation_source: Hospital surface

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Morganella morganii


ncbi_organism_name: Chryseobacterium gleum


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Candidatus Nemicrothrix sp.

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__environmental samples;s__uncultured Candidatus Nemicrothrix sp.


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter sp. YH12072

ncbi_submitter: South China Agricultural University


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: India: Uttar Pradesh; Jalaun; Odotpura

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Australia: Euroa

ncbi_isolation_source: necrotic enteritis field case

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: RMIT


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus licheniformis 10-1-A

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus licheniformis;x__Bacillus licheniformis 10-1-A


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_assembly_level: Chromosome

ncbi_country: Brazil: Goiania

ncbi_isolation_source: lung

ncbi_submitter: Universidade Federal de Goias

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus sp. CF4-2

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_country: China: Sichuan

ncbi_isolation_source: swine

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: HI

ncbi_isolation_source: albacore tuna-anal vent

ncbi_organism_name: Photobacterium kishitanii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: BGI


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Arthrobacter sp. B3I4

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_strain_identifiers: YNQK

ncbi_submitter: zhejiang sci tech university


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_organism_name: Corynebacterium xerosis

ncbi_strain_identifiers: ATCC 373

ncbi_submitter: Universidade Federal do Para

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Candidatus Coprousia avicola

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;x__Coriobacteriaceae incertae sedis;g__Candidatus Coprousia;s__Candidatus Coprousia avicola


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Rhodobacterales bacterium Alpha_01

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_country: China: Wuhan

ncbi_organism_name: Pantoea anthophila

ncbi_submitter: The Central Hospital of Wuhan


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep sea mooring chain biofilm

ncbi_organism_name: Desulfocapsa sp.

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Enterococcus sp. HMSC05C03

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: China: Hefei

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: the First Affiliated Hospital of Anhui Medical University


ncbi_organism_name: uncultured Holophaga sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Kyungpook National University NGS Core Facility Center


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_country: Ghana

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: ocean water

ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: Institut de Biologie de Ecole normale superieure (IBENS), France


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut

ncbi_organism_name: Lachnoclostridium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Thailand: Nan

ncbi_isolation_source: Wond Swab

ncbi_organism_name: Pseudomonas sp. Colony2

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA07643

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Citromicrobium bathyomarinum

ncbi_submitter: Shenzhen University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Zhejiang University


ncbi_country: New Zealand

ncbi_isolation_source: low density polyethylene (LPDE) from waste management plant

ncbi_organism_name: Shewanella sp. SM35

ncbi_submitter: AgResearch


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic soil

ncbi_organism_name: Kaistella polysaccharea

ncbi_refseq_category: reference genome

ncbi_submitter: Ocean University of China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Wyoming


ncbi_country: USA: MA

ncbi_organism_name: Shigella flexneri

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine

ncbi_organism_name: Stutzerimonas decontaminans

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Edinburgh


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: University of Queensland


ncbi_country: Italy: Florence

ncbi_isolation_source: bronchoaspiration material

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Guatemala

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: Switzerland: Thurgau

ncbi_isolation_source: rectal faecal swab

ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: University of Bern


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China

ncbi_isolation_source: seawater surrounding coral Acropora digitifera under normal condition

ncbi_organism_name: bacterium

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: uncultured Acidaminococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Medical City


ncbi_organism_name: uncultured Hydrogenophaga sp.


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: NIH/NHGRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_submitter: Nanjing University of Chinese Medicine


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Northwest A&F University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Pseudooceanicola sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: Salmonella sp. NW627

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_assembly_name: freshwater MAG --- Loc090519-8-7m_bin-1792

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Firmicutes bacterium ADurb.Bin248

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium ADurb.Bin248


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_assembly_name: Rumen uncultured genome RUG199

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudophaeobacter sp. TrK17

ncbi_submitter: University of Oldenburg


ncbi_organism_name: Alteromonas macleodii

ncbi_strain_identifiers: PG 5

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: Pseudomonas sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Semmelweis University


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Darwin; Northern Territory

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Menzies School of Health Research


ncbi_country: Thailand

ncbi_isolation_source: fish paste

ncbi_organism_name: Corynebacterium falsenii

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: Brevibacterium casei

ncbi_submitter: NIH/NHGRI


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: blood

ncbi_submitter: University of Melbourne


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;s__Candidatus Jorgensenbacteria bacterium RIFCSPHIGHO2_02_FULL_45_20


ncbi_isolation_source: The Red Sea

ncbi_organism_name: Sulfitobacter sp. KE35

ncbi_submitter: The Chinese University of Hong Kong


ncbi_submitter: Bielefeld University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Corynebacteriaceae;g__Corynebacterium;s__Corynebacterium doosanense;x__Corynebacterium doosanense CAU 212 = DSM 45436


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 216

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 4199

ncbi_submitter: University of Calgary


ncbi_country: USA: Bloomington; IN

ncbi_isolation_source: Freshwater from river

ncbi_organism_name: Legionella jordanis

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG555

ncbi_organism_name: uncultured Lentisphaerota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__environmental samples;s__uncultured Lentisphaerota bacterium


ncbi_country: Netherlands: Terschelling

ncbi_isolation_source: rhizosphere and bulk soil of C. arenaria stands

ncbi_organism_name: Burkholderia sp. AD24

ncbi_submitter: Netherlands Institute of Ecology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: marine

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Alistipes excrementipullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Makerere University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae WGLW3


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: USA: Texas; Dallas

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_country: USA: PA

ncbi_isolation_source: milk bovine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolate: blood

ncbi_strain_identifiers: blood

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Austria: Herberstein

ncbi_organism_name: Arthrobacter pigmenti

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_assembly_name: uncultured Yoonia sp. EG16N_Bin5

ncbi_isolation_source: Octocoral

ncbi_submitter: iBB-IST


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides nordii

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Instituto de Biotecnologia


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Germany: Leipzig

ncbi_isolation_source: pelleted cells from reactor effluent

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: Helmholtz Center for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_country: USA: Boston; MA

ncbi_isolation_source: tip

ncbi_organism_name: Staphylococcus aureus M0634


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Australia: Queensland

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: Colorado State U


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM23

ncbi_submitter: IGS


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Illinois

ncbi_isolation_source: kitchen counter

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: USA: MD

ncbi_isolation_source: Cultured Food

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: USFDA


ncbi_country: China: Shanghai

ncbi_submitter: School of Agriculture and Biology, Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: France: Bordeaux

ncbi_isolation_source: Stool

ncbi_organism_name: Escherichia coli O104:H4 str. Ec11-4987

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. Ec11-4987


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-211


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 2 (4-6943160)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 2 (4-6943160)


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Phocaeicola sp.


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: wastewater

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: France: Bretagne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Greece: Asprovolta

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Phocaeicola vulgatus dnLKV7

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: Slovenia: pig farm Ihan

ncbi_isolation_source: feces from large intestine

ncbi_organism_name: Prevotella sp. P5-50

ncbi_submitter: University of Ljubljana


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: chicken breast

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Spain

ncbi_isolation_source: Nasal swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA:Florida; Big Torch Key

ncbi_organism_name: Micromonospora sp. WMMD987

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: feces

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Tibet Agricultural & Animal Husbandry University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_submitter: Yale University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__aphid secondary symbionts;s__secondary endosymbiont of Ctenarytaina eucalypti


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University


ncbi_organism_name: uncultured Citromicrobium sp.


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Archangium sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Candidatus Tidjanibacter faecipullorum

ncbi_submitter: Quadram Institutte


ncbi_country: Japan

ncbi_organism_name: Flavobacterium limicola

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 3

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: University of Glasgow


ncbi_assembly_name: freshwater MAG --- B-4_bin-639

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Mexico: San Miguel

ncbi_organism_name: Rhizobium azibense


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: China: Guangdong; Guangzhou

ncbi_isolation_source: vegetable

ncbi_submitter: South China Agriculture University


ncbi_country: Hong Kong

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. ST4848


ncbi_isolation_source: soil

ncbi_organism_name: Flavisolibacter nicotianae

ncbi_submitter: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan


ncbi_organism_name: Sporosarcina psychrophila

ncbi_submitter: Federal Research Center for Fundamental and Translational Medicine


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China

ncbi_organism_name: Salibacterium salarium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Korea University


ncbi_country: Turkey

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Danish Technical University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: mid-stream urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Malaya


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Amycolatopsis thermoflava

ncbi_submitter: BGI Research


ncbi_country: USA: Tift Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Segatella copri


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus australis


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Serratia marcescens


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_isolation_source: stool

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_strain_identifiers: 30f fall

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Streptomyces sp. NPDC088923

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Methylophagaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou university


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_submitter: Yonsei University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Alistipes communis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Houston Methodist


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Agathobacter sp.


ncbi_submitter: Puyang Oil Field General Hospital


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Photobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: China CDC


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-6278

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium casei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Clostridium sp. AF34-10BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bradymonadia bacterium

ncbi_submitter: University of British Columbia


ncbi_isolate: Patient #34

ncbi_isolation_source: Skin

ncbi_organism_name: Cutibacterium acnes

ncbi_strain_identifiers: Patient #34

ncbi_submitter: sapienza university


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_isolation_source: cold seep

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1059


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Ezakiella massiliensis

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chitinophagaceae bacterium UBA2419

ncbi_submitter: University of Queensland


ncbi_country: Peru: Oxygen minimum zone

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Kiel University


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paenibacillus sp. NAIST15-1

ncbi_submitter: Tokyo University of Agriculture


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Klebsiella variicola


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridioides difficile P7

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: The strain was isolated from blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aarhus University


ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Georgia


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Princeton University


ncbi_country: Ethiopia

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Streptomyces sp. NPDC051135

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: IL; Urbana

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. MMG1522

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: Missouri

ncbi_isolation_source: wound

ncbi_organism_name: Vibrio tarriae

ncbi_submitter: CDC


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pseudoxanthobacter soli DSM 19599

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: India: Palampur; HP

ncbi_isolation_source: Soil

ncbi_organism_name: Bacillus sp. FS02

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FS02


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Alicyclobacillus shizuokensis

ncbi_submitter: University of British Columbia


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Acinetobacter sp. Root1280

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: USA: NC

ncbi_isolation_source: porcine pig spleen

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: PA

ncbi_isolation_source: feces (Bos taurus)


ncbi_country: Sudan

ncbi_organism_name: Sinorhizobium arboris LMG 14919

ncbi_submitter: JGI


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 3

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: University of Wyoming


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of Colorado at Boulder


ncbi_country: Turkey: Mardin; Savur

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Yumen Oilfield

ncbi_isolation_source: oil production mixture

ncbi_organism_name: Falsiroseomonas oleicola

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pedobacter sp. ASV1-7

ncbi_submitter: Beijing University of Chemical Technology


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: probiotic prodcut

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Evolve Biosystems Inc.


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.


ncbi_country: Austria

ncbi_isolation_source: serosa

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: Comamonas testosteroni


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_submitter: Institut Pasteur de Dakar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Sichuan

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Mucilaginibacter gracilis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Pacific Ocean: Eastern Tropical North Pacific

ncbi_isolation_source: seawater from oxygen minimum zone

ncbi_organism_name: Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: University of Iowa


ncbi_submitter: Christian Medical College


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Italian National Institute of Health


ncbi_country: China: Jiangxi

ncbi_submitter: China Agricultural University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of California, Riverside


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Washington


ncbi_country: Canada: Squamish

ncbi_isolation_source: Ixodes pacificus

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_country: India

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Beef Carpaccio

ncbi_organism_name: Pseudolactococcus piscium

ncbi_submitter: INRA


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P47P

ncbi_submitter: South China Agricultural University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Nitrospira sp. SB0666_bin_27

ncbi_submitter: University of Queensland


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Australia: Victoria

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Doherty Applied Microbial Genomics


ncbi_isolation_source: vagina

ncbi_organism_name: Prevotella sp. S7 MS 2

ncbi_strain_identifiers: S7 MS 2

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;x__unclassified Prevotella;s__Prevotella sp. S7 MS 2


ncbi_assembly_name: IMG-taxon 2651870363 annotated assembly

ncbi_organism_name: Megamonas sp. Calf98-2

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Wujia chipingensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium


gtdb_type_species_of_genus: t

ncbi_country: United Kingdom: Wales

ncbi_isolation_source: mine water

ncbi_organism_name: Ferrimicrobium acidiphilum DSM 19497

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Luteibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Tannerella forsythia

ncbi_submitter: UC Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: New York; NY

ncbi_isolate: isolate

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Taiwan

ncbi_isolation_source: Taiwan

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_strain_identifiers: Mightyena

ncbi_submitter: National Chung Cheng University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Defluviicoccus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: bacterium


ncbi_isolation_source: Distal colon


ncbi_assembly_name: IMG-taxon 2600255286 annotated assembly

ncbi_organism_name: Paenibacillus sp. NFR01


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: Paulinenaue

ncbi_organism_name: Proteus terrae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Jiangxi Province Center for Disease Control and Prevention


ncbi_country: Malaysia: Selangor

ncbi_isolation_source: shellfish

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: University of Malaya


ncbi_country: India: Kheda; Gujarat

ncbi_organism_name: Siphonobacter sp. BAB-5385

ncbi_submitter: Gujarat State Biotechnology Mission


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterococcus mundtii ATCC 882

ncbi_strain_identifiers: ATCC 882

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus mundtii;x__Enterococcus mundtii ATCC 882


ncbi_country: South Africa: Northern Cape Province

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Pretoria


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: United Kingdom

ncbi_organism_name: [Ruminococcus] torques


ncbi_assembly_name: Rumen uncultured genome RUG10117

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: DSM 13

ncbi_submitter: University of Copenhagen


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium urealyticum

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Salinispora oceanensis

ncbi_submitter: JGI


ncbi_organism_name: Burkholderia aenigmatica

ncbi_submitter: Guangdong Detection Center of Microbiology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_organism_name: Candidatus Fluviicola riflensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Viet Nam

ncbi_isolation_source: Edible insect Bombyx mori

ncbi_organism_name: Escherichia coli

ncbi_submitter: Justus Liebig University Giessen


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. App6-5

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Evtepia sp.

ncbi_submitter: Washington University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_country: Germany: Verden

ncbi_isolation_source: Raw milk

ncbi_organism_name: Galactobacter caseinivorans

ncbi_submitter: Universitaet Bonn


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Limiplasma pullistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma pullistercoris


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Calditrichota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Calditrichota;x__environmental samples;s__uncultured Calditrichota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University College Cork


ncbi_organism_name: Microcystis panniformis

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Universidad Complutense de Madrid


ncbi_submitter: University of verona


ncbi_organism_name: Streptomyces sp. NPDC057375

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Kofleriaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC058644


ncbi_organism_name: Sphingobium sp.


ncbi_organism_name: uncultured Anaerocaecibacter sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Marinobacterium sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Salmonella sp. SKLX119940

ncbi_submitter: Zhejiang university


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Drexel


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_submitter: Shanxi Eye Hospital


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: Streptomyces syringium

ncbi_strain_identifiers: IMV Ac-5025

ncbi_submitter: Ivan Franko National University of Lviv


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: USDA


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bariatricus massiliensis

ncbi_submitter: University of Chicago


ncbi_country: South Africa:Durban

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Florida

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Nigeria

ncbi_isolation_source: Clinical wounds

ncbi_organism_name: Escherichia coli

ncbi_submitter: Igbinedion University Okada


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI-Shenzhen


ncbi_country: Peru: Lima

ncbi_isolation_source: gut

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: IMG-taxon 2671180021 annotated assembly

ncbi_organism_name: Flagellimonas taeanensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Halieaceae bacterium UBA5085

ncbi_submitter: University of Queensland


ncbi_country: Paraguay: Luque

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium CG17_big_fil_post_rev_8_21_14_2_50_44_12


ncbi_assembly_name: De novo Unicycler

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Pukyong national university


ncbi_organism_name: Usitatibacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Colon


ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: bioMerieux


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Lithuania

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Germany

ncbi_isolation_source: spoiled beer

ncbi_organism_name: Fructilactobacillus lindneri

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 513

ncbi_submitter: INRA STLO


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Legionella genomosp. 1

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Turkey

ncbi_isolation_source: traditional yogurt 11

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: TSGB 4251

ncbi_submitter: CENTRAL RESEARCH INSTITUTE OF FOOD AND FEED CONTROL


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Africa

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute for Communicable Disease


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-0748

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_country: Russia

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces canus

ncbi_submitter: Bielefeld University


ncbi_organism_name: Streptomyces sp. BE147

ncbi_submitter: Washington University in St. Louis


ncbi_country: USA: Nebraska

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Colorado State U


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea longicatena

ncbi_submitter: University of Chicago


ncbi_organism_name: Shewanella oneidensis

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: EMG


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Canada

ncbi_isolation_source: Tibial Plateau Leveling Osteotomy (TPLO) screws

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus sp. GDQ20D5P

ncbi_submitter: South China Agricultural University


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Thauera aminoaromatica S2

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Salmonella sp. NW1140

ncbi_submitter: Sichuan University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: icddr,b


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-86

ncbi_submitter: JCVI


ncbi_country: Russia: North Ossetia

ncbi_isolation_source: cheese

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: EMG


ncbi_country: USA: Rhode Island

ncbi_isolation_source: blood of patient with fever after tick-bite innoculated in SCID mouse; and isolated in MKP-F culture

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: AMC (Amsterdam, The Netherlands) and CRIE (Moscow, Russia)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Denmark

ncbi_isolation_source: pig manure

ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: Section of Chemical Engineering, Department of Green Technology, University of Southern Denmark


ncbi_submitter: Translational Health Science and Technology Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Nantong; jiangsu province

ncbi_isolation_source: a feces sample of swine origin

ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: Yangzhou University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Chloroflexus sp.


ncbi_country: Qatar

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Qatar University


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: Turkey

ncbi_isolation_source: abscess

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University of Calgary


ncbi_country: Ghana: Takoradi

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Chicago


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Rumen uncultured genome RUG12056

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: uncultured Nitrosopumilaceae archaeon

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Germany: Bremen

ncbi_isolation_source: continuous bioreactor NO_5109 inoculated with denitrifying sludge is constantly fed with nitric oxide and formate

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Max-Planck for Marine Microbiology


ncbi_organism_name: Methylorubrum subtropicum

ncbi_submitter: Guangdong Microbial Culture Collection Center


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: insititute for microbiology and immunology, faculty of medicine, univerza v ljubljani


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_submitter: Hopital Bicetre


ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Sandaracinaceae bacterium

ncbi_submitter: Nanjing University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2671180176 annotated assembly

ncbi_organism_name: Brevundimonas viscosa

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Geneva University Hospitals


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-finished water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Capnocytophaga gingivalis


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_organism_name: uncultured Azospirillum sp.


ncbi_country: China: Yunnan

ncbi_isolation_source: rubing

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: China Agricultural University


ncbi_country: India: Rajsthan

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Exeter


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. OM05-7

ncbi_submitter: BGI


ncbi_isolation_source: cervical

ncbi_organism_name: Staphylococcus sp. HMSC064E03

ncbi_submitter: The Genome Institute at Washington University


ncbi_submitter: Campden BRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Succinivibrionaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Listeria ivanovii

ncbi_submitter: PulseNet USA


ncbi_country: USA: Texas

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Texas A&M University


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Czech Republic: Praha

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii NIPH 146

ncbi_strain_identifiers: NIPH 146

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii NIPH 146


ncbi_country: Belarus: Rogachev

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Gomel State Medical University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Uniwersytet Warminsko-Mazurski w Olsztynie


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori GAM246Ai

ncbi_submitter: Washington University


ncbi_organism_name: Leptospira milleri

ncbi_submitter: United States Department of Agriculture


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 414

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Corynebacterium callunae DSM 20147


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Kerala; Cochin

ncbi_isolation_source: retail fish market

ncbi_organism_name: Clostridium tetani

ncbi_submitter: Central Institute of Fisheries Technology, Cochin


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiomicrorhabdus sp.

ncbi_submitter: Portland State University


ncbi_country: France: Tours

ncbi_isolation_source: mutant from a clinical S12/111 isolate

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus KINW6056


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Denmark

ncbi_isolation_source: Bacteremia

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Department of Molecular Medicine (MOMA) - Aarhus University Hospital


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Cruoricaptor ignavus

ncbi_submitter: Center for Bioinformatics


ncbi_country: United Kingdom

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolate: BTB 08-75-lux

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: BTB 08-75-lux

ncbi_submitter: Kalmar county hospital


ncbi_country: Uruguay: Salto

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: INRS - Institut Armand-Frappier


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: oysters

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_isolation_source: oral cavity

ncbi_submitter: Washington University Genome Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Alloprevotella;s__Alloprevotella sp. oral taxon 473;x__Alloprevotella sp. oral taxon 473 str. F0040


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P9 CL A35

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Southern University of Science and Technology


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV147

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: JiLin Agricultural Science and Technolog


ncbi_isolation_source: shallow marine sediment

ncbi_organism_name: uncultured Phycicoccus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_country: Canada: Ontario

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus quentini

ncbi_submitter: Public Health Ontario laborato


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Fusobacterium periodonticum

ncbi_submitter: EMG


ncbi_country: Viet Nam: Long An

ncbi_submitter: University of Science, Viet Nam National University Ho Chi Minh City


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: India: Kashmir; J&K

ncbi_isolation_source: saffron field

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: university of jammu

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. FR-008

ncbi_submitter: Wuhan University


ncbi_country: France: Besancon

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Mangrovimonas futianensis

ncbi_submitter: Jinan University


ncbi_isolation_source: metagenome

ncbi_organism_name: Pseudomonas sp.


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: Instituto Nacional de Salud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Spain: Gran Canaria

ncbi_isolation_source: bile

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gemmobacter sp.

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Norway

ncbi_isolation_source: gut

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Elanco Animal Health


ncbi_isolation_source: intestinal tract

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: Longyan University


ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Streptomyces sp. NPDC086989

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Salinicoccus sesuvii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Solibacteraceae bacterium