ncbi_country: Australia

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Microbiological Diagnostic Unit


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: cheese starter culture

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: ASCC 3029

ncbi_submitter: The University of Queensland


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Chile

ncbi_submitter: University of Otago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae ICMP 19455


ncbi_country: India

ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter sp. S-16

ncbi_submitter: BIT Mesra Ranchi-835215


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 160

ncbi_submitter: Oregon State University


ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


gtdb_representative: t

ncbi_assembly_name: freshwater MAG --- A-4_bin-195

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: CNGB


ncbi_country: Antarctica

ncbi_isolation_source: geothermal soil of the north-west slope of Mount Melbourne

ncbi_organism_name: Effusibacillus pohliae DSM 22757

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn University


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of Queensland


ncbi_organism_name: Dialister hominis


ncbi_country: Japan: Tokyo

ncbi_organism_name: Streptomyces kasugaensis

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: China

ncbi_isolation_source: desert regolith

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Arthrobacter sp. 18067

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Uganda: Bwera General Hospital

ncbi_isolation_source: Pus swab

ncbi_submitter: Makerere University


ncbi_submitter: Weifang People's Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Tichowtungia sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: gut content

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL020209

ncbi_submitter: Broad Institute


ncbi_country: Canada

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universite Laval


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Sulfitobacter sp. 1A09134

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Acinetobacter sp. ULE_I053

ncbi_submitter: Universidad de Leon


ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_level: Chromosome

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Dialister invisus


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Enterococcus sp. AZ071


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_organism_name: uncultured Prosthecobacter sp.


ncbi_assembly_level: Complete Genome


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pirellula sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_organism_name: uncultured Geminicoccaceae bacterium


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: CLUE-TERRA


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Gracilimonas sp.


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Angelakisella sp.


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Escherichia fergusonii

ncbi_strain_identifiers: DR 120-CEF

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Inselspital, Bern University Hospital


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Wound secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: China: Hebei University

ncbi_isolation_source: soil

ncbi_organism_name: Metabacillus litoralis

ncbi_submitter: Hebei University


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_submitter: the hong kong university of science and technology


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: lake water

ncbi_organism_name: Microcystis sp. M53602_WE12

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- Loc090519-6m_bin-0759

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Zymo Research Corporation


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium sp. 1081908.1

ncbi_submitter: JCVI


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_isolation_source: nasopharynx


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: Hymenobacter antarcticus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Tibet

ncbi_isolation_source: saline lake

ncbi_organism_name: Psychroflexus montanilacus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China:Hebei province

ncbi_isolation_source: Wound secretion

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Peking University First Hospital


ncbi_isolation_source: Wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Minnesota


ncbi_country: South Korea

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kyungpook National University


ncbi_country: South Korea: Anseong; Gyeonggi-do

ncbi_isolation_source: waste water

ncbi_organism_name: Raoultella ornithinolytica

ncbi_strain_identifiers: Nonyl 4-3

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: Faeces


ncbi_country: Spain: Mallorca

ncbi_isolation_source: Clinical

ncbi_organism_name: Stutzerimonas nosocomialis

ncbi_submitter: University of Balearic Islands


ncbi_country: Australia: Thorneside Wastewater Treatment Plant

ncbi_isolation_source: flocular biomat

ncbi_organism_name: Bdellovibrionaceae bacterium UBA2316

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_submitter: Yale University


ncbi_country: Venezuela

ncbi_isolation_source: Orinoco river basin

ncbi_organism_name: Streptomyces nodosus

ncbi_submitter: University College Dublin


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Clear Labs, Inc.


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Australia: Brisbane

ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Baiyangdian Lake

ncbi_isolation_source: lake sediments

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: College of Life Sciences


ncbi_country: United Kingdom:England

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_assembly_name: Rumen uncultured genome RUG11769

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: IMG-taxon 2654588135 annotated assembly

ncbi_organism_name: Streptococcus equinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Psychrobacillus sp. FSL W7-1493

ncbi_submitter: Penn State


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Bacteroides finegoldii

ncbi_strain_identifiers: Bacteroides finegoldii TSDC17.2-1.1

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA7026

ncbi_submitter: University of Queensland


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Pontimonas sp.

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_country: Portugal

ncbi_isolation_source: secondary treatment wastewater

ncbi_submitter: Universidade Catolica Portuguesa


ncbi_isolate: VTEC

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_country: New Zealand

ncbi_isolation_source: water

ncbi_organism_name: Qipengyuania pacifica

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Denmark

ncbi_isolation_source: smoked fish

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW460-7

ncbi_submitter: Arkin Lab


ncbi_country: New Zealand: Auckland Combined

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: Compost

ncbi_organism_name: Arachidicoccus sp. BS20

ncbi_submitter: Hankyong National University


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Czech Republic: Brno

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: EMG


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA3197

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: University of Chicago


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Dethiobacter sp.

ncbi_submitter: University of Utah


ncbi_organism_name: Streptomyces luteogriseus


ncbi_organism_name: Allorhizobium sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_country: Russia: Lake Baykal region

ncbi_organism_name: Erythrobacter ramosus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: China: Shanghai

ncbi_isolation_source: Gut

ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Shanghai Tenth People's Hospital, Tongji University School of Medicine


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_country: Antarctica

ncbi_isolation_source: stone fragments

ncbi_organism_name: Pseudomonas petrae

ncbi_submitter: Masaryk University


ncbi_country: India: Vellore

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: Brazil

ncbi_strain_identifiers: IBSBF 2538

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. IBSBF 2538


ncbi_organism_name: Bacillus sp. FSL M8-0052

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL M8-0052


ncbi_assembly_name: Paenibacillus A9

ncbi_isolation_source: soil sample

ncbi_organism_name: Paenibacillus sp. A9

ncbi_submitter: Northeastern University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Rhizobiaceae bacterium


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Poland

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: University of Agriculture in Krakow


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Thauera sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AM5_bin-1039

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Streptomyces acidiscabies

ncbi_submitter: Plant Pathology and Entomology, Kagoshima Institute for Agricultural Development


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptomyces sp. NPDC007917

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycobacterium shinjukuense

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Japan

ncbi_isolation_source: human stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Gunma University Graduate School of Medicine


ncbi_submitter: Federal University of Minas Gerais

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_name: Rumen uncultured genome RUG14176

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: Throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Malaysia: Segamat

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Monash University Malaysia


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Netherlands: Nijmegen

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Boston College


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Case Western Reserve University


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: marine solar saltern

ncbi_organism_name: Salegentibacter salinarum

ncbi_submitter: Xiamen University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Guangxi

ncbi_submitter: Northwest A&F University


ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: South Dakota

ncbi_isolation_source: plant tissue

ncbi_organism_name: Methylorubrum sp. Q1

ncbi_submitter: South Dakota State University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Guangzhou

ncbi_submitter: South China Agricultural University


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 192 - depth 50m

ncbi_organism_name: Moraxellaceae bacterium REDSEA-S42_B15

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: Russia: Moscow

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Greece

ncbi_isolation_source: bronchial secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: bioMerieux


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 66

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Devosia lucknowensis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_isolation_source: feces


ncbi_country: Saudi Arabia: Thuwal

ncbi_isolation_source: activated sludge and biofilm from membrane bioreactor

ncbi_organism_name: Betaproteobacteria bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Thiohalomonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01538

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01538


gtdb_type_species_of_genus: t

ncbi_country: South Korea: Jeju

ncbi_isolation_source: tree sap

ncbi_organism_name: Acerihabitans arboris

ncbi_submitter: BioPS Co., Ltd.


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom

ncbi_organism_name: Parabacteroides merdae


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: glacier

ncbi_organism_name: Flavobacterium yafengii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Frigoribacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Arcanobacterium sp.


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Russia: Yekaterinburg

ncbi_isolation_source: patient s blood plasma

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Central Research Institute for Epidemiology


ncbi_country: Kenya: Kakamega

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Saccharofermentanales bacterium


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Acinetobacter wuhouensis

ncbi_submitter: Xiamen University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus cereus group sp. IBL03679

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. IBL03679


ncbi_organism_name: Streptomyces sp. NPDC102437

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Laboratorio de Resistencia Bacteriana


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: uncultured Clavibacter sp.


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Paeniglutamicibacter sp. NPDC091659


ncbi_organism_name: Klebsiella sp. 1SOBk12mer

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Bacillus cereus group sp. MYBK215-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK215-1


ncbi_organism_name: Pseudolabrys sp.


ncbi_assembly_name: freshwater MAG --- Erken-D4_bin-1296

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Limosilactobacillus sp.

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Korea: Cheongdo

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Kyungpook National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Stenotrophomonas muris

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Georgia


ncbi_country: Australia: Newcastle

ncbi_organism_name: Gemmiger sp.

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_isolation_source: Hospital Universitario Marques de Valdecilla (Santander)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_country: Thailand

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Campylobacter fetus

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Sri Lanka

ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_country: Israel

ncbi_isolation_source: gills; fins and scales pooled from 10 healthy Tilapia fish grown in aquaculture ponds

ncbi_organism_name: Vibrio vulnificus CladeA-yb158

ncbi_submitter: Technion - Israel Institute of Technology


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A30

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Uzbekistan

ncbi_organism_name: Actinomadura rubrobrunea

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Borreliella garinii PBr

ncbi_strain_identifiers: PBr

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: TX

ncbi_isolation_source: other

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: China: Dasugan Lake

ncbi_isolation_source: saline lake

ncbi_organism_name: Roseibium aquae

ncbi_submitter: Sun Yat-sen University


ncbi_country: Finland: Vaaralampi mnear Ahmovaara

ncbi_isolation_source: small freshwater lake

ncbi_organism_name: Polynucleobacter sp. MG-6-Vaara-E2

ncbi_submitter: University of Innsbruck


ncbi_country: Brazil

ncbi_isolation_source: 5 liters of water from the Tucurui Power Plant Reservoir; point M5 collected 50cm beneath the lake surface; then filtered by negative pressure for posterior culture in BG-11 medium

ncbi_organism_name: Cyanobium sp. CACIAM 14

ncbi_submitter: Universidade Federal do Para


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin92

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: KAP bin92

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_country: Italy: Milano

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Pedobacter westerhofensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Veillonella ratti

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Casimicrobium huifangae

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: TnphoA 33

ncbi_submitter: Univ Estadual Paulista UNESP/FCAV


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Algibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Succinatimonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Greece

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Prevotella nigrescens ATCC 33563

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella nigrescens;x__Prevotella nigrescens ATCC 33563


ncbi_country: Canada: Alberta

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar 47:d:z39


ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: milk

ncbi_organism_name: Yersinia intermedia

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Clostridium sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Florence


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPLOWO2_01_FULL_42_60


ncbi_country: China: Jilin

ncbi_organism_name: Bifidobacterium sp. W8105

ncbi_submitter: China Agricultural University


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA7262

ncbi_submitter: University of Queensland


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: South Korea: Jeju

ncbi_isolation_source: Saliva

ncbi_organism_name: Neisseria flava

ncbi_submitter: Jeju National University


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_submitter: The University of Texas at Dallas


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Thailand: Bangkok

ncbi_submitter: University of Oxford


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Sweden

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rectal

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: IMGAG (Universitaetsklinikum Tuebingen)


ncbi_organism_name: Pediococcus damnosus

ncbi_submitter: Shanghai Majorbio


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei


ncbi_country: Nicaragua: Managua

ncbi_isolation_source: antrum; stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Caecum


ncbi_assembly_name: freshwater MAG --- MJ110830B_bin-120

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: USDA-ARS-USMARC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Malaysia Sabah


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Coprococcus phoceensis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Canada: Chicoutimi

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Broiler parent75

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Wocania ichthyoenteri Th78

ncbi_submitter: Ocean University of China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acetobacter pasteurianus 3P3

ncbi_submitter: Vital-IT - Swiss Institute of Bioinformatics


ncbi_assembly_name: Rumen uncultured genome RUG10374

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Microcoleus sp.

ncbi_submitter: University of New Brunswick


ncbi_country: Sudan

ncbi_isolation_source: urine

ncbi_submitter: King Abdulaziz University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Candidatus Segetimicrobium genomatis

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Segetimicrobiaceae;g__Candidatus Segetimicrobium;s__Candidatus Segetimicrobium genomatis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Segetimicrobiaceae;g__Candidatus Segetimicrobium;s__Candidatus Segetimicrobium genomatis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa: Limpopo

ncbi_isolation_source: cerebrospinal fluid

ncbi_strain_identifiers: NTPn 18

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Corynebacterium sp.


ncbi_organism_name: Caldalkalibacillus thermarum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_assembly_name: IMG-taxon 2563366502 annotated assembly

ncbi_organism_name: Bifidobacterium merycicum DSM 6492

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Egypt

ncbi_isolation_source: cheese (Domiati)

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: CIRM-BIA 2134

ncbi_submitter: Brigham Young University


ncbi_isolation_source: soil

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Escherichia sp.


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: Single cell amplified by MDA; raw seawater

ncbi_organism_name: Prochlorococcus sp. HOT208_60m_810B23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Kuwait

ncbi_isolation_source: hydrocarbon contaminated sand

ncbi_organism_name: Alkanindiges hydrocarboniclasticus

ncbi_submitter: Kyonggi University


ncbi_country: China:Yunnan province

ncbi_isolation_source: native outdoor hot spring sediment

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Fudan University


ncbi_country: Spain: Universitario Ramn y Cajal Hospital

ncbi_isolation_source: cystic fibrosis

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INRAE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Kerstersia gyiorum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridium sp. JS66

ncbi_submitter: korea institute of science and technology


ncbi_organism_name: Pseudomonas sp. 17073326

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Iraq

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Guizhou Province

ncbi_isolation_source: trunk diseased tissue

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Guizhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_country: Austria

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: urine

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Bacillus sp. DSP3-2-1

ncbi_submitter: Institute of Tibetan Plateau Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. DSP3-2-1


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella sp. 2020_64

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_country: Netherlands

ncbi_isolation_source: grass rhizosphere soil

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: Germany

ncbi_isolation_source: water

ncbi_organism_name: Lelliottia amnigena

ncbi_submitter: TZW: DVGW-Technologiezentrum Wasser


ncbi_organism_name: Streptomyces kaempferi

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: intact colon fecal sample

ncbi_strain_identifiers: MFS 22

ncbi_submitter: USDA


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Monash University


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0036

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: mangrove sludge

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Israel

ncbi_isolation_source: mastitis

ncbi_submitter: Heriot-Watt University


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Acinetobacter sp. UBA6571

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: South Korea: Jinju

ncbi_isolation_source: Vaginal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: USA: California

ncbi_organism_name: Campylobacter lari subsp. concheus

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA4357

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4357


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sludge from an anaerobic bioreactor treating paper mill wastewater

ncbi_organism_name: Desulfotomaculum nigrificans CO-1-SRB

ncbi_submitter: US DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Christchurch

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CMB34_CHL L2:3

ncbi_submitter: University of Canterbury


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_country: USA

ncbi_isolation_source: roots

ncbi_organism_name: Streptomyces sp. SID4985

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasisuis

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Chryseosolibacter sp.

ncbi_submitter: Monash University


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Euzebya sp.


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_isolate: AOP1_E1_surf _bin _31

ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_strain_identifiers: AOP1_E1_surf _bin _31

ncbi_submitter: Genoscope


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Okayama University


ncbi_assembly_name: Rumen uncultured genome RUG11159

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: McMaster University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. SHL010

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. SHL010


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: EMG


ncbi_country: Germany: Regensburg

ncbi_isolation_source: urine [UBERON:0001088]

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_country: USA:New York; Riverdale

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: stool of a summer diarrhea case

ncbi_organism_name: Morganella morganii

ncbi_submitter: Agroscope


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Gallionella sp.

ncbi_submitter: Radboud University


ncbi_organism_name: Aliirhizobium cellulosilyticum

ncbi_strain_identifiers: SEMIA 448

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Hornefia butyriciproducens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_country: Spain

ncbi_isolation_source: decayed wood

ncbi_organism_name: Microbacterium ulmi

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Dominican Republic

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium yuanmingense

ncbi_submitter: Universidad de Salamanca


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA2420


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella quasivariicola

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus proteolyticus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Ares Genetics


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: IRD


ncbi_organism_name: Leptospira borgpetersenii serovar Hardjo

ncbi_submitter: INDICASAT-AIP


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_country: Denmark: Odense NW

ncbi_isolation_source: activated sludge from OdNW_18-Q3-R42-56

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: Bangladesh

ncbi_isolation_source: Cow with clinical mastitis

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Bangladesh Agricultural University (BAU)


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Roseibacillus sp.

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Lactobacillaceae bacterium


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: EPFL


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Williamsoniiplasma somnilux

ncbi_submitter: Academia Sinica


ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Laval


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Massilibacteroides sp.

ncbi_submitter: University of Waterloo


ncbi_country: Kenya: Kisumu

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: USAMRD


ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: University of Stirling


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_strain_identifiers: Isolate 03;Patient 20

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: wound swab

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Thailand:Nakhon Ratchasima

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_organism_name: Candidatus Sutterella merdavium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bradyrhizobium murdochi

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Atlantic Ocean: Irish coastal waters; off west coast

ncbi_organism_name: Pseudoalteromonas sp. EB27

ncbi_submitter: BluePharmTrain


ncbi_isolation_source: field

ncbi_organism_name: Bradyrhizobium japonicum

ncbi_submitter: University of Manitoba


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_organism_name: uncultured Vampirovibrio sp.


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: MPF 24

ncbi_submitter: Jet Propulsion Laboratory


ncbi_isolation_source: ocean water

ncbi_organism_name: Prochlorococcus marinus str. MIT 1342

ncbi_submitter: MIT

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Prochlorococcaceae;g__Prochlorococcus;s__Prochlorococcus marinus;x__Prochlorococcus marinus str. MIT 1342


ncbi_organism_name: Streptococcus sp. cx1

ncbi_submitter: Chengdu University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Mailhella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Nonomuraea sp. NPDC049607

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Rhodocyclaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GP01-A3

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_isolation_source: Sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Salmonella sp. C3292

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13079

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Aquimarina aggregata

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Microcoleus sp. AT8-B4

ncbi_submitter: Palacky University Olomouc


ncbi_assembly_name: Rumen uncultured genome RUG13341

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Sheffield


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Hymenobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Adlercreutzia sp.


ncbi_organism_name: uncultured Chryseosolibacter sp.


ncbi_organism_name: uncultured Lysobacter sp.


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-2408

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis TX2137

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_assembly_name: IMG-taxon 2639763196 annotated assembly

ncbi_organism_name: Pseudomonas sp. bs2935

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France

ncbi_organism_name: Bifidobacterium bifidum

ncbi_strain_identifiers: CNCM I-4319

ncbi_submitter: University College Cork


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_isolation_source: human gut

ncbi_organism_name: Anaerococcus hydrogenalis

ncbi_submitter: EMG


ncbi_organism_name: Amphibacillus cookii

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.


ncbi_organism_name: Photobacterium damselae


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sneathiella sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Texas Tech University


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces nigrescens

ncbi_submitter: Bielefeld University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_country: USA:Wyoming; Yellowstone National Park; MixyFritzy hot spring

ncbi_isolation_source: alkaline hot spring microbial mat

ncbi_organism_name: Roseiflexus sp.

ncbi_submitter: University of Minnesota


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli BWH 32

ncbi_strain_identifiers: BWH 32

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_country: Bangladesh: Kuakata

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Russia: Orenburg

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Institute for Cellular and Intracellular Symbiosis


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Oxford


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_isolation_source: fecal sample

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Switzerland: Basel

ncbi_isolation_source: clinical sample

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Agroscope


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_country: Taiwan

ncbi_organism_name: Novosphingobium umbonatum

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Lomalinda


ncbi_country: Brazil:Santa Catarina; Itajai

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium sp. MSK158

ncbi_submitter: Duke University


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Indian Institute of Technology Roorkee


ncbi_organism_name: Stutzerimonas urumqiensis

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_organism_name: Yersinia enterocolitica


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Gaza Strip

ncbi_submitter: Justus-Liebig University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Pseudorhodobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_isolation_source: Polystyrene-feeding group superworm feces

ncbi_organism_name: Galactobacter sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The University of Hong Kong


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Ireland

ncbi_organism_name: Bordetella bronchiseptica MBORD762

ncbi_submitter: JCVI


ncbi_country: Argentina

ncbi_isolation_source: BAL

ncbi_submitter: Instituto de Higiene


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: New York City

ncbi_isolation_source: skin-AD site

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Georgia


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient38 sputum

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: India: Chennai

ncbi_isolation_source: Seeds

ncbi_organism_name: Bacillus xiamenensis

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Myroides odoratus

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: India: Bihar; Buxar; Buxar

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Russia: Rostov-na-Donu

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: SRCAMB


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada: Toronto

ncbi_isolation_source: water

ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: University of Toronto


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Nanaji Deshmukh Veterinary Science University, Jabalpur, Madhya Pradesh, India


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Anaerocolumna sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;s__Candidatus Competibacter denitrificans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;s__Candidatus Competibacter denitrificans;x__Candidatus Competibacter denitrificans Run_A_D11


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Thiohalomonadaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Aeromonas sp. 602396

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Gardnerella swidsinskii

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Bartonella sp. AA81SXKL

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Evtepia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Bacilli bacterium


ncbi_country: Pacific Ocean

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Salmonella sp. C3259

ncbi_submitter: Sichuan University


ncbi_assembly_name: freshwater MAG --- Ki2-D4_bin-0101

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Trichococcus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institutes of Food and Drug Control


ncbi_country: USA: Michigan

ncbi_isolation_source: Public Building

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: China: Qinghai province; Yushu; Hoh Xil

ncbi_isolation_source: feces

ncbi_organism_name: Teichococcus wenyumeiae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: ShanXi

ncbi_isolation_source: compost

ncbi_organism_name: Brevibacillus composti

ncbi_submitter: Agricultural Bio-resources Research Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: China: Jiangsu

ncbi_isolation_source: rectum

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Romania: Neamt

ncbi_submitter: Cantacuzino National Institute of Medico-Military Research-Development


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_country: USA

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_organism_name: Segatella copri

ncbi_submitter: South Dakota State University


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis BTB13-222

ncbi_submitter: Broad Institute


ncbi_submitter: Ares Genetics GmbH


ncbi_country: China: Jinan

ncbi_organism_name: Streptomyces clavuligerus

ncbi_submitter: Shandong First Medical University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Helicobacter apodemus


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: microbes were collected at JL-Dive100-S03

ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_organism_name: Lunatimonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Italy: Mogliano Veneto (TV)

ncbi_isolation_source: intestine content

ncbi_organism_name: Clostridium botulinum C/D

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Costa Rica

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Puerto Rico: Mayaguez

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis


ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: TX

ncbi_isolation_source: feces parrot

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN