ncbi_country: China: Jiangsu

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA: Santa Barbara Zoo

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


gtdb_representative: f

ncbi_assembly_level: Contig

ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Auburn University


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Massilia sp.

ncbi_submitter: China Agricultural University


ncbi_country: Kenya

ncbi_organism_name: Lachnospiraceae bacterium UBA5899

ncbi_submitter: University of Queensland


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Itacoatiara

ncbi_isolation_source: Amazon river

ncbi_organism_name: Nostoc sp. CMAA1605

ncbi_submitter: EMBRAPA Environment


ncbi_country: Israel

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KPC 19

ncbi_submitter: TLVMC


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: School of Medicine, Cardiff University, UK


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC004546

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Ukraine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_country: USA

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Guangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangzhou center for disease control and prevention


ncbi_country: Canada: Station Biologique des Laurentides (QC)

ncbi_isolation_source: tree leaf surface

ncbi_organism_name: Methylobacterium sp. J-030

ncbi_submitter: Universite du Quebec a Montreal


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Staphylococcus capitis subsp. urealyticus

ncbi_submitter: Imperial College London


ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium pseudolongum PV8-2

ncbi_submitter: ETH Zurich


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Cytobacillus sp. FSL H8-0458

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Cytobacillus;x__unclassified Cytobacillus;s__Cytobacillus sp. FSL H8-0458


ncbi_organism_name: Streptomyces sp. NPDC088810


ncbi_country: Japan

ncbi_organism_name: Mycobacterium kiyosense

ncbi_submitter: Department of Mycobacteriology, Leprosy Research Center, National Institute of Infectious Diseases - Japan


ncbi_country: Australia

ncbi_isolation_source: sewage from residential aged care facility

ncbi_organism_name: Stenotrophomonas sp. Sm0041

ncbi_submitter: Medical Research Future Fund


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Thermosulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_assembly_name: freshwater MAG --- KR_bin-0962

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sengenics sdn bhd


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Kvitko Lab


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Honolulu; HI

ncbi_isolation_source: accessory nidamental gland

ncbi_organism_name: Ruegeria sp. ANG-S4

ncbi_submitter: University of Connecticut


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. TH40

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: AgResearch


ncbi_organism_name: Escherichia coli

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Enterobacter sp. 2VL

ncbi_submitter: University of Trento


ncbi_country: United Kingdom

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Paenibacillus sp. FSL H7-0442

ncbi_submitter: Penn State


ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Parapedobacter lycopersici

ncbi_refseq_category: reference genome

ncbi_submitter: China General Microbiological Culture Collection Center

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Hymenobacter norwichensis

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Streptomyces sp. NPDC088019

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium UBA1369


ncbi_country: Brazil: Recife

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bergeyella cardium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Tunisia: Agareb

ncbi_isolation_source: roots

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: University of Neuchatel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_isolation_source: Synovial Fluid Right Elbow Bursa

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: Germany: Kilianstollen; Marsberg

ncbi_isolation_source: biofilm

ncbi_organism_name: Meiothermus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Microcoleus sp. Pol12A4

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_isolation_source: commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Australia: Brisbane

ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 887

ncbi_submitter: USDA-ARS


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Stellenbosch University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: CIRM-BIA 2120

ncbi_submitter: Brigham Young University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Nacional de Cardiologia


ncbi_country: Mexico

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Netherlands

ncbi_submitter: UMCU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus S0462


ncbi_organism_name: Paraburkholderia phytofirmans

ncbi_submitter: University of Illinois at Chicago


ncbi_submitter: Tarim University


ncbi_organism_name: Blautia caecimuris

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Neotabrizicola sp. VNH66

ncbi_submitter: Kyonggi university


ncbi_organism_name: Candidatus Brevefilum sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Brevifilum;x__unclassified Candidatus Brevefilum;s__Candidatus Brevefilum sp.


ncbi_organism_name: Staphylococcus petrasii

ncbi_submitter: Department of Dermatology, The Jikei University School of Medicine


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Mucilaginibacter angelicae

ncbi_strain_identifiers: NCAIM B.02415

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Acinetobacter pittii


ncbi_organism_name: Arthrobacter sp. NPDC056727

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: SPRUCE 449

ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 449

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudarthrobacter sp. NPDC092184


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Candidatus Scatovivens sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Scatovivens;x__unclassified Candidatus Scatovivens;s__Candidatus Scatovivens sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Rickettsia endosymbiont of Pantilius tunicatus

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 3609

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Candidatus Scatocola faecipullorum


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Micromonospora marina

ncbi_strain_identifiers: PCU 269


ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: uncultured Acidimicrobium sp.


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Brazil: Fortaleza

ncbi_submitter: LNCC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Rothia sp. BD8

ncbi_submitter: Universidade Federal do Rio Grande do Norte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. BD8


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_submitter: University of Wyoming


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Roseivirgaceae bacterium


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: France

ncbi_isolation_source: cheese (Emmental type)

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 1396

ncbi_submitter: Brigham Young University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Thiocapsa sp.

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA: Chicago

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Gaiella sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Argentina

ncbi_isolation_source: Osteomyelitis

ncbi_organism_name: Staphylococcus aureus DAR3178

ncbi_submitter: Broad Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: MORINAGA MILK INDUSTRY CO.,LTD.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: St. Joseph; Minnesota

ncbi_isolation_source: running water

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Bacteroides sp. CAG:770

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Streptomyces sp. NPDC032161

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Colorado


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: ARRIAM


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SC


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for medical research


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Cocleimonas sp.

ncbi_submitter: Tsinghua University


ncbi_assembly_name: freshwater MAG --- MJ120620B_bin-186

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus VET1434S

ncbi_submitter: Broad Institute


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Synergistaceae bacterium UBA6083

ncbi_submitter: University of Queensland


ncbi_country: China: Hunan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Pirellula sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Thailand: Phatthalung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: stool of a ~3 month-old infant on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: URMITE


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Singapore

ncbi_isolation_source: Gastric biopsy tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National University of Singapore


ncbi_assembly_name: freshwater MAG --- Ki1-2-7m_bin-432

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Georgia

ncbi_isolation_source: Matsoni fermented milk product

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Ljubljana


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Fusobacterium pseudoperiodonticum

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: Canada: Lacombe

ncbi_organism_name: Holdemanella sp.

ncbi_submitter: AAFC


ncbi_organism_name: Morganella morganii

ncbi_submitter: Weifang People's Hospital


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Brazil: Abrolhos Bank; Bahia

ncbi_isolation_source: bacteria were purified from Symbiodinium sp. co-cultures originally isolated from Mussismilia braziliensis coral

ncbi_organism_name: Roseivirga pacifica

ncbi_submitter: UFRJ


ncbi_organism_name: Lachnobacterium sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: BAL

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Iran: Kerman

ncbi_isolation_source: Barley

ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Ghana: Takoradi

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__environmental samples;s__uncultured Candidatus Competibacteraceae bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Alicycliphilus sp. UBA7619

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Yunnan

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;s__Candidatus Negativibacillus faecipullorum


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Escherichia coli O79:H7 str. 06-3501

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O79:H7;x__Escherichia coli O79:H7 str. 06-3501


ncbi_country: Canada

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Limosilactobacillus sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Thailand

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: USA: California

ncbi_organism_name: Pseudomonas cannabina

ncbi_submitter: University of Toronto


ncbi_country: Denmark

ncbi_isolation_source: Ear swab

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Odense University Hospital, Denmark


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Agathobacter rectalis


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Coree Beijing Company Limited


ncbi_organism_name: Streptomyces sp. JL3001

ncbi_submitter: Hunan University of Chinese Medicine


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Palacky University Olomouc


ncbi_country: Kenya

ncbi_isolation_source: sediments from five Kenyan Lakes

ncbi_organism_name: Billgrantia kenyensis

ncbi_submitter: The Third Institute of Oceanography, Ministry of Natural Resources of PR China


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Czech Republic

ncbi_isolation_source: gloves

ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: FDA/CFSAN


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate and no molasses at 250 mg/L thiocyanate

ncbi_organism_name: Sediminibacterium magnilacihabitans

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Burkholderia glumae

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae SGBS007

ncbi_submitter: MD Anderson Cancer Center


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SBM Research Institute of Rospotrebnadzor


ncbi_country: China

ncbi_isolation_source: rice leaf

ncbi_organism_name: Xanthomonas oryzae

ncbi_submitter: Institute of crop sciences, Chinese academy of agricultural sciences


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Pseudomonas hunanensis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Switzerland: Basel

ncbi_isolation_source: clinical sample

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_assembly_level: Chromosome

ncbi_organism_name: uncultured Desulfospira sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Microbacterium oxydans

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Thermodesulfovibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California Berkeley


ncbi_country: Peru

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: New Zealand: Southern

ncbi_isolation_source: Pernasal

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: Phenylobacterium parvum

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: De novo assembly of KCRI isolate R0007_350

ncbi_isolation_source: wound swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: Chile: Santiago

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Church and Dwight


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Pseudomonadaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: California

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Jackson MS

ncbi_isolation_source: urine

ncbi_submitter: Santa Clara University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridium celatum

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paenibacillus lautus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Thioalkalivibrio nitratireducens DSM 14787

ncbi_submitter: A.N. Bach Institute of Biochemistry


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Escherichia coli O157:H7 str. K7140

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K7140


ncbi_organism_name: Rickettsia sibirica

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: stool sample

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: Ethiopia: Oromiya; Arisi; Shirka

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: Kenya

ncbi_isolation_source: camel milk products

ncbi_organism_name: Weissella confusa

ncbi_submitter: Brigham Young University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: Top soil

ncbi_organism_name: Paraburkholderia haematera

ncbi_submitter: GHENT UNIVERSITY


ncbi_country: USA: New York

ncbi_isolation_source: Breast Abscess

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: University of Rochester Medical Center


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Rhodococcus sp. BP-315

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-315


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Denmark

ncbi_isolation_source: freshwater farm

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Listeria marthii

ncbi_submitter: University of Tennessee


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UIUC


ncbi_organism_name: Brevundimonas sp. 1P04UVC-2

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: Hp-MG

ncbi_submitter: Koceli University, Faculty of Medicine


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Opitutaceae bacterium


ncbi_organism_name: uncultured Pirellulaceae bacterium


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Dissulfurispiraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China Medical University


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Sphingosinicella sp.

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_genome_category: derived from single cell

ncbi_organism_name: Escherichia coli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Elainellaceae cyanobacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Histophilus somni

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: uncultured Rikenella sp.


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Halarcobacter sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Tritonibacter sp. SIMBA_163

ncbi_submitter: SIMBA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: China: Hangzhou

ncbi_isolation_source: rumen content from lactating cow

ncbi_organism_name: bacterium

ncbi_submitter: zhejiang university


ncbi_submitter: Zhejiang University


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexi bacterium UBA4735

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium UBA4735


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Jilin University


ncbi_organism_name: uncultured Rhodothermaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: NH

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Dartmouth College


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG671

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Porphyromonadaceae bacterium UBA3321


ncbi_assembly_name: freshwater MAG --- AM-2014-D2_bin-730

ncbi_organism_name: uncultured Schlesneria sp.

ncbi_submitter: BILS


ncbi_country: Spain: Santander

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA: San Antonio

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae MRSN 6902

ncbi_strain_identifiers: MRSN 6902

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MRSN 6902


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Namibia

ncbi_isolation_source: Namibian saline spring

ncbi_organism_name: Salinivibrio sp. SS2

ncbi_submitter: University of the Western Cape


ncbi_country: Australia: Sydney

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori PMSS1

ncbi_submitter: University of California, Davis


ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__environmental samples;s__uncultured candidate division Zixibacteria bacterium


ncbi_country: Tanzania

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Bergen


ncbi_assembly_name: freshwater MAG --- Loc090402-4m_bin-0301


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Buchananiibacteriota;s__Candidatus Buchananbacteria bacterium RIFCSPHIGHO2_02_FULL_39_17


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Bacillales bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Viet Nam

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague institute "Microbe"


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Ethiopia: Amhara; North Gondar

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Pseudomonas sp. W2Oct36

ncbi_submitter: Institut de recherche Labiris


ncbi_country: China: Yantai; Yellow sea

ncbi_organism_name: Paraglaciecola marina

ncbi_submitter: Xinxiang Medical University


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: United Kingdom:Scotland

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Belarus: Vitebsk

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Mangrovimonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Fish kidney

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Nippon veterinary and life sciense university


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Marinobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Chicken meat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar;x__Salmonella enterica subsp. enterica serovar Hadar str. ATCC 51956


ncbi_country: USA: California; Eel River; South Fork Eel near Cedar Creek

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_isolation_source: ballast tank

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Shandong university


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: solid retention time of 6 days

ncbi_organism_name: Limosilactobacillus oris

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-277

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-277


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Polymyxin B

ncbi_submitter: The University of Queensland


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Kenya

ncbi_organism_name: Bifidobacterium sp. UBA6396

ncbi_submitter: University of Queensland


ncbi_country: India: West Bengal; Malda

ncbi_isolation_source: gut of infected larvae

ncbi_organism_name: Enterobacter sp. ASE

ncbi_strain_identifiers: ASE

ncbi_submitter: University of Calcutta


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_assembly_name: Rumen uncultured genome RUG11609

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_country: China:Jiangxi; Jiujiang

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Mesorhizobium sp. M0162

ncbi_submitter: Washington State University


ncbi_country: USA: GA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Desulfobulbus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolate: SPRUCE 203

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_strain_identifiers: SPRUCE 203

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Anhui; Tongling

ncbi_organism_name: Elusimicrobiota bacterium


ncbi_country: Poland

ncbi_isolation_source: minestrone mix

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Warsaw


ncbi_country: China

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri Shi06HN118

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Washington; DC

ncbi_isolation_source: Biofilm grown on the Cathode of a Microbial Fuel Cell (Biofilm MCL)

ncbi_organism_name: Leisingera sp. UBA4491


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_assembly_name: freshwater MAG --- T8-5_bin-234

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0065

ncbi_submitter: Broad Institute


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Streptomyces sp. ISL-87

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- KTt_bin-1341

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__environmental samples;s__uncultured Candidatus Peregrinibacteria bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pseudomonas alabamensis

ncbi_submitter: University of Queensland


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_assembly_name: De Novo assembly

ncbi_isolation_source: oil-contaminated beach sediment

ncbi_organism_name: Labrenzia sp. C1B70

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Nocardia sp. NPDC051833

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Germany

ncbi_organism_name: Pseudoduganella danionis

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Delftia sp. HK171

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-5-13

ncbi_submitter: Curtin University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_organism_name: Brucella pseudogrignonensis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lachnobacterium sp.


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli 908632

ncbi_submitter: Washington University


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Arachnia propionica


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Applied Microbiology and Biotechnology Laboratory COMSATS University


ncbi_organism_name: Microbacterium sp.


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Marinobacter sp.


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Cote d Ivoire: Africa

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: NRRL BD-146

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Netherlands: Olburgen

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; full scale (600m3) reactor for the removal of ammonium from wastewater from the potato processing industry

ncbi_organism_name: Chlorobi bacterium OLB7

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobi bacterium OLB7


ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Nocardiopsis sp. NPDC060348

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Candidatus Scybalocola faecigallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Methylomonas sp.

ncbi_submitter: Portland State University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Flavobacteriaceae bacterium TMED121

ncbi_submitter: University of Southern California


ncbi_country: Italy

ncbi_isolation_source: oropharyngeal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_country: Canada: Ontario

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_submitter: University Hospital Frankfurt


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Avelusimicrobium fimicolum

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ballast tank

ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Shandong university


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_country: China: Yibin; Sichuan

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Blautia sp.


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad de Guadalajara


ncbi_country: China: Guangdong

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mucilaginibacter sp. 10I4

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_organism_name: Opitutales bacterium


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sobrinus TCI-89

ncbi_submitter: JCVI


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Coprothermobacter sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: University of Queensland


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: South Africa

ncbi_organism_name: Chryseobacterium sp. CH21

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: China

ncbi_isolation_source: Termite (Nasutitermes hainanensis) gut

ncbi_organism_name: Lactococcus nasutitermitis

ncbi_submitter: Northeast Agricultural University


ncbi_country: China: Yunnan

ncbi_isolation_source: lake mud

ncbi_organism_name: Streptomyces sp. CB00271

ncbi_submitter: Central South University


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: Austria

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0471

ncbi_submitter: Broad Institute


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Shigella flexneri

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Cupriavidus necator

ncbi_submitter: Mons University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Drag Swab

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus epidermidis VCU117

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Gordonia sp. SL306

ncbi_submitter: Joint Microbiome Facility

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. SL306


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Japan

ncbi_isolation_source: River

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_isolation_source: deep sea

ncbi_organism_name: Salinimonas iocasae

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: USA: Pacific; Franklin County; Missouri

ncbi_isolation_source: Mouth

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Washington University in St. Louis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14399

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- LaPlata-7m-b_bin-442

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Candidatus Hydrothermia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Hydrothermota;c__Candidatus Hydrothermia;x__unclassified Candidatus Hydrothermia;s__Candidatus Hydrothermia bacterium


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Candidatus Thioglobus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__environmental samples;s__uncultured Candidatus Thioglobus sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: University of Birmingham


ncbi_organism_name: Ancylobacter dichloromethanicus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Enterococcus casseliflavus


ncbi_organism_name: Microbacterium aerolatum

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Yantai University


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_J_5

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Salmonella sp. NW1215

ncbi_submitter: Sichuan University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Streptococcus caprae


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_assembly_name: freshwater MAG --- KTt_bin-0728

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Roseivirga sp.

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: human

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Tennessee


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG333

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; low temperature; high CO2

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Australian Institute of Marine Science


ncbi_organism_name: bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Treponema putidum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiia bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Catenibacterium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Tianjin

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nankai University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Tang lab


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__environmental samples;s__uncultured Candidatus Puniceispirillum sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: WRAIR-Africa


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: Sphingosinicellaceae bacterium M-36

ncbi_submitter: Institute of Hydrobiology, Chinese Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG11049

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Chryseobacterium ginsenosidimutans

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: insects

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Hunan Normal University


ncbi_country: Italy

ncbi_isolation_source: cutaneus swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Institute for Biotechnology, BTU Cottbus-Senftenberg


ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Cellulomonas sp.


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: JCVI


ncbi_country: Australia

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Menzies School of Health Research


ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Netherlands

ncbi_isolation_source: maize silage

ncbi_organism_name: Lentilactobacillus diolivorans DSM 14421

ncbi_submitter: Shanghai Majorbio


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_strain_identifiers: LT2 KO STM3617

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: China: Hangzhou

ncbi_isolation_source: gut

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_assembly_name: Psychrobacter sp NC44

ncbi_isolate: Psychrobacter sp. NC44

ncbi_isolation_source: skin of cod

ncbi_organism_name: Psychrobacter sp. NC44

ncbi_strain_identifiers: Psychrobacter sp. NC44

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Manchester


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Roseburia faecis

ncbi_submitter: University of Chicago


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: cheese

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Australia: Nambour; Queensland

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_organism_name: Providencia sp. PROV102

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Prosthecochloris aestuarii

ncbi_submitter: The University of Hong Kong


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: Brazil

ncbi_isolation_source: Sewage

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Texas; Montgomery

ncbi_isolation_source: guttural pouch lavage fluid

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Passaging

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: intestinal tract

ncbi_organism_name: Bacillus sp. BS98

ncbi_submitter: QingDao University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BS98


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Queensland Department of Health


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Manis javanica

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__candidate division Zixibacteria bacterium CG_4_9_14_3_um_filter_46_8


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: Clemson University


ncbi_organism_name: Romboutsia sp. 1001216sp1

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Kvitko Lab


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: uncultured Amphritea sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Russia: Moscow

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Taiwan

ncbi_isolation_source: chicken

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albany


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: UCC isolate

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: US Food and Drug Administration


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus OCMM6109

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: NATIONAL UNIVERSITY OF IRELAND, GALWAY


ncbi_organism_name: Mesorhizobium sp. M1148

ncbi_submitter: Washington State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: De novo Assembly

ncbi_country: Malaysia

ncbi_isolation_source: marine

ncbi_organism_name: Pseudomonas aeruginosa MW3a

ncbi_submitter: University of Malaya


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Finland

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Saari 10

ncbi_submitter: University of Helsinki


ncbi_country: USA: North Carolina

ncbi_organism_name: Barnesiella sp. GGCC_0306

ncbi_submitter: Gusto Global LLC


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Ignavibacteria bacterium UBA6670

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium UBA6670


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Apilactobacillus kunkeei

ncbi_submitter: Andong National University


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Phocaeicola faecipullorum

ncbi_submitter: Quadram Institutte


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Agroscope


ncbi_country: Ireland: Cork

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_country: Australia: New South Wales

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_submitter: Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar 1,13,23:z:1,5


ncbi_country: USA

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Montenegro: Kotor

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha lotti

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Flavobacteriales bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flaviramulus sp.

ncbi_submitter: marine college, shandong university