ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_assembly_level: Contig

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antwerp


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


gtdb_representative: t

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_assembly_level: Chromosome

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Tongji University


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: lake water

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: University of Michigan


ncbi_assembly_level: Complete Genome

ncbi_country: Netherlands

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: MRSA surveillance in man and animal


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 201 (4-4459431)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 201 (4-4459431)


ncbi_organism_name: Acetivibrio clariflavus

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


gtdb_type_species_of_genus: t

ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea sediments at the Hatoma Knoll in the Mid-Okinawa Trough hydrothermal field

ncbi_organism_name: Sulfurimonas autotrophica DSM 16294

ncbi_refseq_category: reference genome

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2690315650 annotated assembly

ncbi_organism_name: Rhizobiales bacterium GAS191

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: Col 31-PUJ

ncbi_submitter: Pontificia Universidad Javeriana


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_country: Italy

ncbi_isolation_source: large colon

ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: University of Calgary


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_strain_identifiers: MRSA


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom:England


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Northwest A&F University


ncbi_country: USA: CA

ncbi_isolation_source: Dental plaque

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans;x__Aggregatibacter actinomycetemcomitans serotype d str. SA2200


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: yogurt

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Shanxi University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Escherichia coli O26:H11 str. 11368

ncbi_submitter: University of Tokyo, Graduate School of Frontier Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. 11368


ncbi_country: Turkey

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: USAMRIID


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of Pittsburgh


ncbi_country: Japan: Horonobe URL

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium HGW-Bacteroidetes-10


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Marinobacter zhanjiangensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_assembly_name: Rumen uncultured genome RUG12749

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Africa: Western Cape Province

ncbi_organism_name: Paraburkholderia sp. UCT31

ncbi_submitter: University of Pretoria


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Phocoenobacter atlanticus subsp. cyclopteri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: Qatar

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Qatar University


ncbi_country: Mozambique

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Belgium

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_assembly_name: Bifbia

ncbi_isolation_source: Feces of tamarin

ncbi_organism_name: Bifidobacterium biavatii DSM 23969

ncbi_submitter: University of Parma


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_submitter: South China Agricultural University


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: IMG-taxon 2582581264 annotated assembly

ncbi_organism_name: Acidocella aminolytica 101 = DSM 11237

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acidocellaceae;g__Acidocella;s__Acidocella aminolytica;x__Acidocella aminolytica 101 = DSM 11237


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Xanthomonas hortorum pv. hederae

ncbi_strain_identifiers: WHRI 7726B

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Peru: Caraz; Ancash

ncbi_isolation_source: clinical specimen; blood

ncbi_organism_name: Bartonella bacilliformis Hosp800-02

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Blood culture

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_organism_name: Xanthobacteraceae bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_submitter: United Kingdom Health Security Agency


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0367R


ncbi_organism_name: Phocaeicola faecicola

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shandong

ncbi_isolation_source: nasal swab

ncbi_submitter: China Agriculture University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Rhodococcus qingshengii


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EBI


ncbi_country: Nigeria: Aduwawa Market; Benin City

ncbi_isolation_source: fermented milk product nono

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Streptomyces sp. RB13

ncbi_submitter: Leibniz Institute for Natural Product Research and Infection Biology (Leibniz-HKI)


ncbi_country: China: Panjin

ncbi_isolation_source: sediment

ncbi_organism_name: Aquamicrobium lusatiense

ncbi_submitter: dalian university of technology


ncbi_assembly_name: Rumen uncultured genome RUG11236

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China:Yunnan province

ncbi_isolation_source: native outdoor hot spring sediment

ncbi_organism_name: Bacteroides graminisolvens

ncbi_submitter: Fudan University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: SC


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Saccharococcus caldoxylosilyticus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Actinomyces culturomici


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: [Ruminococcus] lactaris


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antwerp


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Faculty of Veterinary Medicine, Ankara University (FVMAU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured Terrimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: University of British Columbia


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Micromonospora sp. L32

ncbi_submitter: Northwest Minzu University


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Candidatus Kryptoniota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;x__unclassified Candidatus Kryptoniota;s__Candidatus Kryptoniota bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Lentimicrobium sp.

ncbi_submitter: University of Iowa


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Lachnospira eligens


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA:Republic County; Kansas

ncbi_isolation_source: Jack O Lantern-type pumpkin plants

ncbi_organism_name: Xanthomonas cucurbitae

ncbi_submitter: University of Illinois, Urbana-Champaign


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Johannesburg


ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: New England Biolabs


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: Italy

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_submitter: National Institute for Communicable Disease


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Poultry meat

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Roseiflexaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Norway

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: ANIWHA


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Melbourne

ncbi_isolation_source: respiratory

ncbi_submitter: Monash University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Leyella stercorea

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 319

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: SNUC 5479

ncbi_submitter: University of Calgary


ncbi_organism_name: Clostridia bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Havana


ncbi_country: USA: Colorado

ncbi_isolation_source: fecal swab female ferret; 4 months old

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: endosphere

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: NIOO KNAW

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_country: Germany

ncbi_isolation_source: chick-box-paper

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Freie Universitaet Berlin


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: duck organ

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Berta


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaeta sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Luzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: XY

ncbi_submitter: university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: United Kingdom

ncbi_strain_identifiers: BGSC 4G4

ncbi_submitter: University of Bath

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar galleriae


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Halobacteroidaceae bacterium


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Mexico: Sinaloa; Angostura

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CIAD, A.C.


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: ballast tank

ncbi_organism_name: Aquabacter sp.

ncbi_submitter: Shandong university


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Arthrobacter sp. efr-133-TYG-120

ncbi_submitter: University of Chicago


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 23038;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Tetragenococcus halophilus

ncbi_strain_identifiers: JLE

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma Metropolitana Unidad Xochimilco


ncbi_country: Australia

ncbi_organism_name: Amycolatopsis rifamycinica

ncbi_submitter: University of Delhi


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa BWHPSA013

ncbi_submitter: Broad Institute


ncbi_country: Austria

ncbi_isolation_source: throat

ncbi_organism_name: Corynebacterium belfantii

ncbi_submitter: AGES


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil: Campinas; SP

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: State University of Campinas


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Roseburia sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Leptotrichia buccalis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 11252

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_assembly_name: Rumen uncultured genome RUG406

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: NNSm 2795

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: France

ncbi_organism_name: Brucella suis F5/05-4


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Manchester;x__Salmonella enterica subsp. enterica serovar Manchester str. ST278


ncbi_submitter: West Virginia University


ncbi_isolation_source: sputum from CF patient

ncbi_organism_name: Burkholderia dolosa

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli O111:H8

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Fudan University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Agricultural Sciences


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Erwinia sp. V71

ncbi_submitter: max planck institute for biology, tuebingen


ncbi_organism_name: Pseudomonas laurylsulfatiphila

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Maritimibacter sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tongji University


ncbi_country: China: Haerbin

ncbi_isolation_source: fetilized topsoil

ncbi_submitter: CAU


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Salinicoccus siamensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Denmark

ncbi_isolation_source: culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Chr. Hansen A/S


ncbi_isolation_source: stool sample

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: Comoros

ncbi_submitter: University of Bath


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Laboratory for Foodborne Zoonoses


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Japan: Nagano; Suwa

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_country: Iran: Kermanshah

ncbi_isolation_source: Wheat rhizosphere

ncbi_organism_name: Pseudomonas kermanshahensis

ncbi_submitter: KU Leuven


ncbi_country: China: Beijing

ncbi_submitter: The General Hospital of the People's Liberation Army


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of California Riverside


ncbi_organism_name: Paraclostridium dentum

ncbi_submitter: University of California, Santa Barbara


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: caceal

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_isolation_source: a xerophilous moss

ncbi_organism_name: Caballeronia grimmiae

ncbi_submitter: Laboratory of Biocatalysis and Synthetic Biotechnology


ncbi_country: Denmark: Odense

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Region Zealand


ncbi_assembly_name: Rumen uncultured genome RUG11946

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_submitter: University hospital Lubeck


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Chile

ncbi_isolation_source: Shellfish hatchery

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: University of Santiago de Compostela


ncbi_organism_name: Luteolibacter sp.


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: human plantar abscess of 36-year-old male

ncbi_organism_name: Corynebacterium confusum

ncbi_submitter: Bielefeld University


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: TU Delft


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: lake water

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Salegentibacter sp.

ncbi_submitter: McGill University


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Germany: Tubingen

ncbi_organism_name: Bartonella henselae

ncbi_strain_identifiers: Houston-I

ncbi_submitter: Agroscope


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Yersinia enterocolitica subsp. enterocolitica

ncbi_submitter: SC


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolate: Nitrospira sp. RBC083

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Nitrospira sp.

ncbi_strain_identifiers: Nitrospira sp. RBC083

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Birmingham; AL

ncbi_isolation_source: Ceca

ncbi_organism_name: Anaerotruncus sp. G3(2012)

ncbi_submitter: Broad Institute


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus M20726


ncbi_country: Australia: Queensland

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_country: China: Shanghai

ncbi_submitter: Fudan University


ncbi_country: Brazil: Vitoria

ncbi_isolation_source: urine

ncbi_submitter: Fiocruz


ncbi_country: Nigeria: Lagos; Takwa Bay

ncbi_isolation_source: dry sand

ncbi_organism_name: Vibrio vulnificus

ncbi_strain_identifiers: TAK 141

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ GmbH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_country: Sudan

ncbi_isolation_source: Vegetable

ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: King Abdulaziz University


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis TX0309A

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Enterobacter mori

ncbi_submitter: Federal Research Center for Virology and Microbiology, Branch in Nizhny Novgorod, Nizhny Novgorod, R


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_assembly_name: Rumen uncultured genome RUG12717

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Escherichia coli UM146

ncbi_submitter: MBRI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: EPFL


ncbi_submitter: University of Connecticut


ncbi_country: USA

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: India: Vellore

ncbi_isolation_source: Respiratory specimen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College, Vellore


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Texas at Austin


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. MB02u-14

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: fermentation

ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: International Space Station

ncbi_isolation_source: Nomex 8

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: uncultured Marinobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterococcus sp. DIV0876

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_organism_name: Salmonella sp. 741265091_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Oligosphaeraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: Microbacterium sp. genome assembly

ncbi_organism_name: Microbacterium sp. MM2322

ncbi_strain_identifiers: Microbacterium sp. genome assembly

ncbi_submitter: center for biotechnology (cebitec), bielefeld university


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Australian Institute of Marine Science

ncbi_isolation_source: seawater

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Milan


ncbi_country: India: Glacier near Kunzum Pass; Lahaul -Spiti; Himachal Pradesh

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus sp. IHBB 10380

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Microbacterium sp. P26

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium malmoense

ncbi_submitter: JCVI


ncbi_isolation_source: Urine

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Phyllobacteriaceae bacterium

ncbi_submitter: Fudan University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Amphritea sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: hand

ncbi_submitter: University of KwaZulu Natal


ncbi_country: USA: IL

ncbi_isolation_source: Corn Flour

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nagoya University


ncbi_country: Spain

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Uppsala University


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Thermotogaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter hepaticus ATCC 51449

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Infection and Immunity, International Institute for Zoonosis Control, Hokkaido University


ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: South Korea: Gyeonggi

ncbi_isolation_source: stool

ncbi_submitter: Korea Centers for Disease Control and Prevention


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_organism_name: Exiguobacterium sp. s152

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s152


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Greece: Athens

ncbi_submitter: The Unniversity of Queensland


ncbi_country: Nigeria

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Cardiff University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SC


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Microcoleus sp. AT8-B6

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 216


ncbi_organism_name: Collinsella bouchesdurhonensis

ncbi_submitter: URMITE


ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Parolsenella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Beihua University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: caecum

ncbi_organism_name: Anaeromassilibacillus sp. An200

ncbi_submitter: Veterinary Research Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: rumen content from lactating cow

ncbi_organism_name: bacterium

ncbi_submitter: zhejiang university


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Mexico

ncbi_isolation_source: Pulque

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: INRAE


ncbi_isolation_source: ballast tank

ncbi_organism_name: Flagellimonas beolgyonensis

ncbi_submitter: Shandong university


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Utrecht University


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0207

ncbi_submitter: Texas A&M University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas beijingensis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_assembly_name: IMG-taxon 2616644812 annotated assembly

ncbi_organism_name: Neomesorhizobium albiziae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Italy: Rome

ncbi_isolation_source: anaerobic reactor producing medium/long chain fatty acids through the fermentation of food waste

ncbi_organism_name: Mobilibacterium timonense

ncbi_submitter: Italian National Research Council (CNR)


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Escherichia coli str. 'clone D i14'

ncbi_strain_identifiers: clone D i14

ncbi_submitter: TEDA School of Biological Sciences and Biotechnology, Nankai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli str. 'clone D i14'


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_submitter: University of Toronto


ncbi_country: Greece

ncbi_isolation_source: Pleural fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: bioMerieux


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: CA

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Broad Institute


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces sp. NPDC127129

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: SPRUCE 328

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 328

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Guangdong; Guangzhou

ncbi_isolation_source: activated sludge in livestock wastewater treatment plant

ncbi_organism_name: Candidatus Brocadia sp.

ncbi_submitter: Technion-israel institute of technology

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp.


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef carcass

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptomyces sparsogenes DSM 40356

ncbi_submitter: Department of Chemistry - University of Basel


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_country: USA: Tennessee

ncbi_isolation_source: root

ncbi_organism_name: Flavobacterium sp. CF136

ncbi_submitter: Oak Ridge National Lab


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: Kelp sample

ncbi_organism_name: Gilvimarinus algae

ncbi_submitter: Shandong University


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_submitter: University of Bologna


ncbi_country: USA

ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Denitrovibrio sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Changsha

ncbi_isolation_source: lung

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Sa-CS

ncbi_submitter: Hunan Agricultural University


ncbi_organism_name: Demequina gelatinilytica

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Morganella morganii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: USDA ARS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Synechococcus sp. MIT S9509

ncbi_strain_identifiers: MIT S9509

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Ketobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_organism_name: Mycolicibacterium fortuitum


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium GW2011_GWF2_45_18


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli EPEC C342-62

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Lawsonibacter sp.


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20121825


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Ear canal secretions

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Campylobacter californiensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Jinan university


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-278

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Xanthomonas sp. NCPPB 3582

ncbi_strain_identifiers: NCPPB 3582

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: Poultry faeces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: India

ncbi_isolation_source: rhizosphere/geocarposphere of Arachis hypogaea

ncbi_organism_name: Pseudomonas sp. AF76

ncbi_submitter: Institut de Recherches Microbiologiques - Wiame


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit meat cut

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Cytobacillus horneckiae

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Germany: Dresden

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Massachusetts

ncbi_organism_name: Alloscardovia macacae

ncbi_submitter: University of Massachusetts


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Utah


ncbi_submitter: Nanjing Agricultural University


ncbi_country: Tanzania

ncbi_isolation_source: Perineal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2599185324 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC46-3

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha intestinigallinarum


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF55-24LNA

ncbi_submitter: BGI-Shenzhen


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Alberta


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia mollaretii


ncbi_country: Netherlands

ncbi_isolation_source: root

ncbi_organism_name: Bradyrhizobium sp. MOS003

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Neptuniibacter sp. QD48_11

ncbi_submitter: Shantou University


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_organism_name: Enterobacter sichuanensis

ncbi_submitter: IHU Mediterranee Infection


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Dorea sp. 5-2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Metamycoplasma salivarium

ncbi_submitter: Iwate Medical University


ncbi_country: USA: Arkansas

ncbi_isolation_source: shrimp

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: USA: PA

ncbi_isolation_source: smoked pork chop

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Pakistan: Lahore

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: National University of Sciences and Technology


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stone ruins (quartz)

ncbi_organism_name: Geodermatophilus sp. TF02-6

ncbi_submitter: University of New Hampshire


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Staphylococcus sp. FSL W8-1270

ncbi_submitter: Penn State


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sphingobium yanoikuyae


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_strain_identifiers: NNLm 2668

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_submitter: University of Washington


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: Water column of Rimov Reservoir; Czechia

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: Biology Centre CAS, Institute of Hydrobiology


ncbi_isolate: Nitrospira sp. RBC100

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Nitrospira sp.

ncbi_strain_identifiers: Nitrospira sp. RBC100

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: BGI


ncbi_organism_name: Actinomycetospora corticicola

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Poland: North-East

ncbi_isolation_source: backwater

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Medical University of Bialystok


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellophilus tesquorum

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Cornish; Utah

ncbi_isolation_source: plant stem

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Salmonella sp. YP169-1

ncbi_submitter: Yangzhou University


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Nham; fermented pork

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Chandrakasem Rajabhat University


ncbi_country: USA: Arizona

ncbi_organism_name: Agrobacterium sp. S7/73

ncbi_submitter: Oregon State University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Haliangiales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Achromobacter marplatensis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Yoonia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Sphingobacterium spiritivorum

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UIUC


ncbi_organism_name: Hyphomicrobiales bacterium


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Enterococcus casseliflavus


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: uncultured Rhodocyclaceae bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Haemaphysalis qinghaiensis


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Finland: Olkiluoto Island

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfomicrobium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces; ancestral strain

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Czech Republic: Krivoklatsko forestland

ncbi_isolation_source: mud of a creek bank

ncbi_organism_name: Acinetobacter terrae

ncbi_submitter: National Institute of Public Health


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Oceanicaulis sp. UBA7814

ncbi_submitter: University of Queensland


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Bahamas

ncbi_isolation_source: marine sponge

ncbi_organism_name: Roseivirga spongicola

ncbi_submitter: FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA


ncbi_isolation_source: peanut butter

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile CD181

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: comammox bioreactor

ncbi_organism_name: Nitrospira sp. CR1.2

ncbi_submitter: IWWR, RADBOUD UNIVERSITY


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Alberta

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: uncultured Blautia sp.


ncbi_country: Mexico: Puebla

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centro de Investigaciones en Ciencias Microbiologicas


ncbi_isolate: cow fecal

ncbi_strain_identifiers: cow fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: India: Punjab; Ludhiana; Sheikhdaulat

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Tanzania: Dar Es Salaam

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. TH09

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom

ncbi_isolation_source: Laboratory strain

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Georgia

ncbi_isolation_source: Lake Lanier

ncbi_organism_name: Actinobacteria bacterium UBA3066

ncbi_submitter: University of Queensland


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Italy: Bologna

ncbi_isolation_source: water

ncbi_organism_name: Legionella resiliens

ncbi_submitter: University of Bologna


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_submitter: University of Michigan


ncbi_isolation_source: Caecum


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: in silico pooling of 166 mouse fecal samples

ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Cote d Ivoire

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_assembly_name: IMG-taxon 2708742533 annotated assembly

ncbi_organism_name: Pseudobacteriovorax antillogorgiicola

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Mexico

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Tokyo University of Pharmacy and Life Sciences


ncbi_organism_name: Enterococcus durans

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Streptomyces zaomyceticus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Ruminococcus albus SY3

ncbi_submitter: Weizmann Institute of Science


ncbi_organism_name: Oleispira sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Greece: Thessaloniki

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia

ncbi_isolation_source: Red wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Chile: Santiago

ncbi_submitter: Universidad de Chile


ncbi_country: USA: Minesota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Andhra Pradesh

ncbi_isolation_source: root

ncbi_organism_name: Streptomyces sp. RP5T

ncbi_submitter: University of Hyderabad


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Epulonipiscium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Epulonipiscium;x__unclassified Candidatus Epulonipiscium;s__Candidatus Epulonipiscium sp.


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. SID2888

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: IMG-taxon 2675903041 annotated assembly

ncbi_organism_name: Nitrosomonas halophila

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate and no molasses at 250 mg/L thiocyanate

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: uncultured Acholeplasmatales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_submitter: University of Sheffield


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China

ncbi_organism_name: Bacillus sp. FJAT-45350

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-45350


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Lactiplantibacillus argentoratensis

ncbi_submitter: USDA-ARS


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Brazil

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Caulobacter segnis ATCC 21756

ncbi_submitter: US DOE Joint Genome Institute


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Sichuan University


ncbi_country: Gaza Strip

ncbi_isolation_source: ear

ncbi_submitter: Justus-Liebig University


ncbi_country: Japan

ncbi_isolation_source: municipal wastewater

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Thailand: Nhong Khai

ncbi_isolation_source: food

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Segatella copri


ncbi_organism_name: Bacillus sp. ICE1

ncbi_submitter: Unversidad Michoacana de San Nicolas de Hidalgo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ICE1


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudoruminococcus massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Adlercreutzia equolifaciens


ncbi_organism_name: Anaerostipes hadrus


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolate: SPRUCE 391

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 391

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Elusimicrobium simillimum


ncbi_organism_name: Rhodococcoides kroppenstedtii

ncbi_submitter: University of Fribourg


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter freundii complex sp. 2024EL-00216


ncbi_organism_name: Xanthomarina gelatinilytica

ncbi_submitter: Ocean University of China


ncbi_assembly_name: freshwater MAG --- VK3_bin-0918

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: bacterium


ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__ant endosymbionts;g__Candidatus Blochmanniella;x__unclassified Candidatus Blochmanniella;s__Blochmannia endosymbiont of Camponotus sp.


ncbi_organism_name: Prevotella sp.


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Rectal swab 1

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Central del Ecuador


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_isolate: PaSz

ncbi_strain_identifiers: PaSz

ncbi_submitter: Laboratory of Veterinary Biochemistry School of Veterinary Medicine Department of Veterinary Medicine, Rakuno Gakuen University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Mucinivorans sp.

ncbi_submitter: China Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Corynebacterium uberis

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: Denmark: Hilleroed

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Region Zealand


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0327

ncbi_submitter: Broad Institute


ncbi_organism_name: Ferviditalea candida

ncbi_strain_identifiers: SYSU GA230002

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil core

ncbi_organism_name: Erwinia billingiae

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Stanford Healthcare


ncbi_country: USA

ncbi_isolation_source: culture collection deposit

ncbi_organism_name: Streptomyces clavuligerus

ncbi_strain_identifiers: NRRL 3585

ncbi_submitter: John Innes Centre


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: FDA/CDC


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Belgium: Merebeke

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D5_bin-732

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Universidad de Chile


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: China: Fujian

ncbi_organism_name: Shewanella mangrovisoli

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: France

ncbi_isolation_source: wheat and rye sourdough

ncbi_organism_name: Weissella cibaria

ncbi_strain_identifiers: LBAE H25

ncbi_submitter: Brigham Young University


ncbi_country: Japan: Shizuoka

ncbi_organism_name: Pseudomonas amygdali pv. photiniae

ncbi_strain_identifiers: ICMP 7840

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. photiniae


ncbi_isolation_source: artisanal lactic starter (for Gruyere de Comte cheese making)

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: CIRM-BIA 225


ncbi_country: Germany: Hesse; Darmstadt

ncbi_submitter: Julius Kuehn-Institut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar tenebrionis


ncbi_organism_name: Escherichia coli ATCC BAA-2209

ncbi_strain_identifiers: ATCC BAA-2209

ncbi_submitter: American Type Culture Collection


ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli KTE33

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Iran

ncbi_isolation_source: Saline water

ncbi_organism_name: Marinobacter iranensis

ncbi_submitter: University of Sevilla, Spain


ncbi_country: Bangladesh: Rajshahi

ncbi_isolation_source: Floor swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b)


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_country: Norway: south shore of Isfjorden bay; Svalbard

ncbi_isolation_source: permafrost sample

ncbi_organism_name: Glutamicibacter sp. M10

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Zurich


ncbi_country: Colombia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_country: China: Luzhou

ncbi_isolation_source: no

ncbi_organism_name: Proteus sp. FZP2095

ncbi_submitter: Southwest Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. FZP2095


ncbi_country: Atlantic Ocean

ncbi_isolation_source: water

ncbi_organism_name: Pseudoalteromonas sp. Angola-31

ncbi_submitter: Michigan Technological University


ncbi_country: China: Beijing

ncbi_isolation_source: Artificial municipal wastewater treatment

ncbi_organism_name: Deltaproteobacteria bacterium PRO3

ncbi_submitter: Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium PRO3


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella sonnei 09-1032

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: Xinjiang Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Oregon State University


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: University of Alabama at Birmingham


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: NPA

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centre for genomic regulation (CRG)


ncbi_country: USA: South Carolina

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides congonensis


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Guatemala

ncbi_organism_name: Shigella dysenteriae WRSd3

ncbi_submitter: Igenbio Inc


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SCOA6008

ncbi_submitter: Broad Institute


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Zipacnadia bacterium

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;c__Candidatus Zipacnadia;x__unclassified Candidatus Zipacnadia;s__Candidatus Zipacnadia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Spain

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces pristinaespiralis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR