ncbi_organism_name: Escherichia coli KTE176

ncbi_submitter: Broad Institute


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Universtity Hospital Cologne


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_organism_name: Psychromonas sp. CNPT3

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_assembly_level: Contig

ncbi_organism_name: Burkholderia humptydooensis MSMB43

ncbi_submitter: NMRC

ncbi_type_material_designation: assembly from type material


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Mid-Stream Urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR202 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__environmental samples;s__uncultured SAR202 cluster bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Japan: Shiga

ncbi_isolation_source: Spinal Fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_isolation_source: Dental biofilm

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jeonbuk National University


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_isolate: GBBC 2087

ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_strain_identifiers: GBBC 2087

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: rwlp

ncbi_submitter: COMSATS University, Islamabad sahiwal campus


ncbi_assembly_level: Chromosome

ncbi_assembly_name: Streptomyces lividans 1326

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces lividans 1326

ncbi_submitter: CINVESTAV


ncbi_country: Turkey: Mersin

ncbi_isolation_source: Orchard

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Soil

ncbi_organism_name: Pseudomonas sp. 52 E 6

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__unclassified Pseudomonas;s__Pseudomonas sp. 52 E 6


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_country: China: the East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Roseibium aggregatum

ncbi_submitter: Ocean University of China


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Rakuno Gakuen University


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0737


ncbi_country: Canada: Guelph

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pirellula staleyi DSM 6068

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Pirellula;s__Pirellula staleyi;x__Pirellula staleyi DSM 6068


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H27858


ncbi_isolation_source: enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium OSCR and associated heterotrophs

ncbi_organism_name: Marinobacter sp. HL-58

ncbi_submitter: Pacific Northwest National Laboratroy


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonas australica

ncbi_submitter: University of Queensland


ncbi_country: Germany

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 5 / E; 5m depth; 0.2 filter

ncbi_organism_name: Tenericutes bacterium GWE2_34_108

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__unclassified Mycoplasmatota;s__Tenericutes bacterium GWE2_34_108


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: France

ncbi_isolation_source: Vaginal fluid

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Crocosphaera watsonii WH 8502

ncbi_submitter: UCSC


ncbi_country: United Kingdom:Wales

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Daqing

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobacterium olei

ncbi_refseq_category: reference genome

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the seqafrica consortium


ncbi_assembly_name: IMG-taxon 2616644808 annotated assembly

ncbi_organism_name: Actinopolyspora righensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Japan

ncbi_isolation_source: catheter

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Toho University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Kitchen E

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Cornell University


ncbi_organism_name: Staphylococcus epidermidis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Staphylococcus singaporensis

ncbi_submitter: National University Hospital


ncbi_isolation_source: human stool

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: Rain forest

ncbi_organism_name: Lactobacillus sp. ESL0680

ncbi_submitter: University of Lausanne


ncbi_organism_name: Streptomyces iakyrus


ncbi_organism_name: Holdemania filiformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: gut content

ncbi_organism_name: Anaerocaecibacter muris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Ningxia Hui Autonomous Region Center for Disease Control and Prevention


ncbi_assembly_name: Rumen uncultured genome RUG13879

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: China: Gansu province

ncbi_isolation_source: saline soil

ncbi_organism_name: Planococcus halotolerans

ncbi_submitter: Sichuan University


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: oropharynx; sputum; or bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: EPIC E190

ncbi_submitter: University of Washington


ncbi_country: India: Vellore

ncbi_submitter: Christian Medical College


ncbi_country: Madagascar

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: South Korea

ncbi_isolation_source: Salty fermented fish sauce

ncbi_organism_name: Guptibacillus hwajinpoensis

ncbi_submitter: Yonsei University


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Hangzhou

ncbi_submitter: dianzhenduan


ncbi_country: Brazil: Sao Pablo

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolate: S5 bin 2

ncbi_organism_name: Nostoc sp.

ncbi_strain_identifiers: S5 bin 2

ncbi_submitter: Duke University


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_country: USA: Colorado

ncbi_isolation_source: Ground beef

ncbi_submitter: US Meat Animal Research Center


ncbi_isolation_source: blood

ncbi_organism_name: Bartonella henselae JK 42

ncbi_strain_identifiers: JK 42

ncbi_submitter: Broad Institute


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Universite Laval


ncbi_organism_name: Priestia megaterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA7873

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Japan

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Toho University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Actinomyces graevenitzii

ncbi_submitter: EMG


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: India: Uttar Pradesh

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Granulibacter bethesdensis

ncbi_submitter: Integrated Genomics


ncbi_organism_name: Enterococcus faecalis


ncbi_country: Japan: Kanagawa

ncbi_isolation_source: Water

ncbi_organism_name: Thalassococcus sp. S3

ncbi_submitter: The University of Tokyo


ncbi_organism_name: [Archangium] primigenium

ncbi_submitter: University of Mississippi


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: University of Southern California

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Oxford


ncbi_organism_name: Corynebacterium sp. AOP40-9SA-29

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: uncultured Afipia sp.


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_isolate: AOP7_A2_surf _bin _2

ncbi_organism_name: Mesonia sp.

ncbi_strain_identifiers: AOP7_A2_surf _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: Gardnerella pickettii

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: North-West University


ncbi_isolate: SPRUCE 637

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_strain_identifiers: SPRUCE 637

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Australia: Newcastle

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Marihabitans sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Halobacillus trueperi

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Moline; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Tagaea sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: Salmonella sp. NW796

ncbi_submitter: Sichuan University


ncbi_organism_name: [Ruminococcus] lactaris


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiia bacterium


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovaceae bacterium


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD1_bin-1869

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Chlamydiia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA17371

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Alberta


ncbi_organism_name: Limisphaerales bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-0625

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sphingomonadales bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Sporolactobacillaceae;g__Sporolactobacillus;s__Sporolactobacillus vineae;x__Sporolactobacillus vineae DSM 21990 = SL153


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolate: Streptococcus species

ncbi_isolation_source: Human

ncbi_organism_name: bacterium

ncbi_strain_identifiers: Streptococcus species

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Chulalongkorn University


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Neobacillus thermocopriae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Escherichia coli O18:H1

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Bhopal

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. BRP05

ncbi_submitter: university of Oxford


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Sweden

ncbi_isolation_source: feces from a healthy human

ncbi_organism_name: Weissella confusa


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Corynebacterium genitalium ATCC 33030

ncbi_submitter: Baylor College of Medicine


ncbi_country: Germany

ncbi_isolation_source: kefir

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SysMilk


ncbi_country: Georgia: Tbilisi

ncbi_isolation_source: fecal sample

ncbi_submitter: Eliava IBMV

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wuhan University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F80349

ncbi_submitter: Broad Institute


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: USA: Green Canyon; Gulf of Mexico

ncbi_isolation_source: 10 Gulf of Mexico water column samples before the DWH oil spill

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: National Oceanic & Atmospheric Administration


ncbi_organism_name: Klebsiella sp. 73633

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_assembly_name: Rumen uncultured genome RUG10258

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Kerstersia gyiorum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Ecuador: Guayaquil

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_country: USA: CA

ncbi_isolation_source: mushroom

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1570


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: China: Hainan

ncbi_isolation_source: algae

ncbi_organism_name: Mangrovicoccus algicola

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway

ncbi_isolation_source: skin lesion

ncbi_organism_name: Tenacibaculum finnmarkense genomovar finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: UT; Canyonlands National Park

ncbi_isolation_source: Bromus rhizosphere soil

ncbi_organism_name: Saccharothrix sp. ALI-22-I

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Georgia;Atlanta

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Exiguobacterium aestuarii

ncbi_submitter: Peking University Shenzhen Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium aestuarii


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: lung fragment

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: NSU Genome Research Institute (NGRI)


ncbi_country: Bulgaria: Sofia; Military Medical Academy (MMA)

ncbi_isolation_source: urine sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: South China Agricultural University


ncbi_country: USA: NY

ncbi_isolation_source: intestine (Canis lupus)


ncbi_country: China: Beijing

ncbi_isolation_source: Shunt fluid

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Russia: Moscow

ncbi_isolation_source: terrestrial mud volcano

ncbi_organism_name: Alkalibaculum sporogenes

ncbi_strain_identifiers: M08 DMB

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Salmonella sp. NW766

ncbi_submitter: Sichuan University


ncbi_country: Netherlands

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_submitter: Broad Institute


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus LPIH6008


ncbi_assembly_name: Rumen uncultured genome RUG10142

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA:Hawaii; Oahu

ncbi_isolation_source: Seawater enrichment with o-hydroxybenzoate

ncbi_organism_name: Vreelandella venusta

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Eubacterium sp. CAG:180

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:180


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Solimonas sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Salmonella sp. NW216

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces fumigatiscleroticus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Enterococcus sp. C42(2024)

ncbi_submitter: Northwest A & F University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: EMG


ncbi_organism_name: uncultured Trichococcus sp.


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: Canada: Montreal

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Burkina Faso

ncbi_isolation_source: Carcasses

ncbi_submitter: USDA-ARS-USNPRC


ncbi_assembly_name: Rumen uncultured genome RUG11051

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Colombia: Antioquia; Bello

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Antioquia


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Fokinia solitaria

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Fokinia;s__Candidatus Fokinia solitaria


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Montpellier Service de Microbiologie et Hygiene Hospitaliere CHU Nimes


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Streptomyces sp. Root63

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: bacterium

ncbi_submitter: Universite Laval


ncbi_country: Belgium

ncbi_strain_identifiers: CFBP 4954

ncbi_submitter: CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CFBP 4954


ncbi_organism_name: Brachymonas sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: intestines

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: University of Antwerp, Belgium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Denmark

ncbi_isolation_source: Nose

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus ST398


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestonebacteria bacterium RIFOXYA2_FULL_40_8


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Anaerobutyricum avicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Belgium: Comblain-au-Pont

ncbi_isolation_source: cave

ncbi_organism_name: Streptomyces lunaelactis

ncbi_submitter: Center for Protein Engineering


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: South Korea

ncbi_isolation_source: Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Seoul National University


ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universidade Federal de Pelotas


ncbi_country: Malawi

ncbi_organism_name: Xanthomonas cassavae CFBP 4642

ncbi_strain_identifiers: NCPPB 101

ncbi_submitter: University of Exeter


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: Rectum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Department of Microbiology, Faculty of Science, Gombe State University, Tudun Wada, Gombe, Gombe Sta


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMG


ncbi_country: Colombia

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Antioquia


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: raw meat-based diets for companion animals

ncbi_submitter: University of Zurich


ncbi_isolation_source: leaf

ncbi_organism_name: Sphingomonas sp. Leaf257

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Ohio

ncbi_isolation_source: respiratory

ncbi_submitter: JCVI


ncbi_country: Thailand: Chiang Mai

ncbi_isolation_source: food

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: University of Chicago


ncbi_country: Ghana

ncbi_isolation_source: Human sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: TU Delft


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: China

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: jiangnan


ncbi_organism_name: Porphyromonas pasteri

ncbi_submitter: Hospital Sirio-Libanes


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium GW2011_GWC1_40_35


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Serratia sp. JKS000199

ncbi_submitter: University of Pittsburgh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. JKS000199


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College Dublin


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Gimesia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: China: Wuhan

ncbi_isolation_source: leaves

ncbi_organism_name: Pseudomonas sp. SHLA8

ncbi_submitter: Hubei University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_isolation_source: Human (bronchial fluid)

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Cognatishimia coralii

ncbi_submitter: Yantai University


ncbi_organism_name: Streptomyces buecherae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: IMG-taxon 2619618958 annotated assembly

ncbi_organism_name: Marinobacter sp. DSM 26671

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: sewage

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_organism_name: Phocaeicola vulgatus


ncbi_submitter: Huzhou CDC


ncbi_organism_name: Alteromonas macleodii


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Anaerobutyricum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Haemaphysalis qinghaiensis


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: Halomonas sp. BLK-85

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Bacillus cereus group sp. BC13

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC13


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 3362

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: BRAC University


ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Sansha Yongle Bluehole

ncbi_isolation_source: strict anaerobic seawater; particle

ncbi_organism_name: bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-a_bin-271

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Massilicoli timonensis


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite de Limoges


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Alistipes shahii


ncbi_country: Brazil: Braganca


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AM97-05

ncbi_submitter: BGI-Shenzhen


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Oregon State University


ncbi_country: Antarctica: Mackay Glacier regions; Towle Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: Monash University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: University of Chicago


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA:New York;Manhattan

ncbi_isolation_source: Xenic protist cell culture

ncbi_organism_name: Filomicrobium sp.

ncbi_submitter: American Museum of Natural History


ncbi_organism_name: Serratia nevei

ncbi_submitter: McMaster University


ncbi_organism_name: uncultured Polyangiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Russia: Moscow

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: China: Peking

ncbi_isolation_source: tissue sample

ncbi_organism_name: Serratia marcescens

ncbi_submitter: China Medical University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Cambodia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: feces

ncbi_organism_name: Sutterella seckii

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;s__Candidatus Portnoybacteria bacterium CG_4_10_14_0_8_um_filter_40_50


ncbi_organism_name: uncultured bacterium


ncbi_country: Australia

ncbi_isolation_source: cellulose fed anaerobic digester inoculated with sludge

ncbi_organism_name: Fibrobacteria bacterium AD80

ncbi_submitter: The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;c__Fibrobacteria;x__unclassified Fibrobacteria;s__Fibrobacteria bacterium AD80


ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Wenzhouxiangella sp.


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_country: India: Agartala

ncbi_isolation_source: Sputum of tuberculosis patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Centre for Genetic Engineering and Biotechnology


ncbi_country: USA: Alabama

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Auburn University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Rhodococcus olei

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Enterobacter Cloacae ENM-22


ncbi_country: Brazil: Iranduba

ncbi_isolation_source: leaf litter

ncbi_organism_name: Flavobacterium nitrogenifigens

ncbi_submitter: University of Sao Paulo


ncbi_country: Ghana

ncbi_isolation_source: Human sputum

ncbi_submitter: TU Delft


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring microbial mats

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_isolation_source: unknown

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: USA: shoreline of South Tufa region of Mono Lake; California

ncbi_isolation_source: water/sediment

ncbi_organism_name: Halomonas sp. ML-15

ncbi_submitter: Griffith University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: BGI


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: USTC


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Australia: Townsville

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia singularis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Leptospira kirschneri

ncbi_submitter: insititute for microbiology and immunology, faculty of medicine, univerza v ljubljani


ncbi_country: Australia: Kalgoorlie

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: shaoxing people's hospital


ncbi_country: South Korea

ncbi_isolation_source: Liver and spleen

ncbi_organism_name: Escherichia coli O78:H51

ncbi_strain_identifiers: APEC E18005

ncbi_submitter: Seoul National University


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Ancylobacter sp. SL191

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Australia: WA; DAFWA research station paddock 7a

ncbi_organism_name: Mesorhizobium sp. WSM4989

ncbi_submitter: Murdoch University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Sungiibacteriota;s__Candidatus Sungbacteria bacterium RIFCSPHIGHO2_02_FULL_53_17


ncbi_country: India: Jharkhand; Bokaro; Khetko

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Colon

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Candidatus Phytoplasma solani

ncbi_submitter: University of Udine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrXII (Stolbur group);s__Candidatus Phytoplasma solani


ncbi_organism_name: Rothia nasimurium

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Cerasicoccus arenae


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Christian Medical College


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 3892A

ncbi_submitter: University of Exeter


ncbi_assembly_name: IMG-taxon 2596583600 annotated assembly

ncbi_organism_name: Sphingobium faniae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces anthocyanicus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptomyces spororaveus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Shewanella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Fujian

ncbi_isolation_source: windrow compost pile

ncbi_organism_name: Neobacillus thermocopriae

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Vellore Institute of Technology University


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: Col 49-PUJ

ncbi_submitter: Pontificia Universidad Javeriana


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: USA

ncbi_isolation_source: Plant

ncbi_organism_name: Pantoea sp. B270

ncbi_submitter: TEXAS A&M UNIVERSITY


ncbi_organism_name: Colwellia sp. Arc7-635

ncbi_submitter: The First Institute of Oceanography, SOA


ncbi_assembly_name: freshwater MAG --- D2_bin-043

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Eisenbergiella merdavium

ncbi_submitter: Quadram Institutte


ncbi_country: Australia: WA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_isolation_source: anaerobic digsetion effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Mexico: Huautla Morelos

ncbi_isolation_source: plant nodule in agricultural field

ncbi_organism_name: Rhizobium sp. NXC24

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Queensland


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China: Shanghai

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: milk (Reblochon)

ncbi_organism_name: Leuconostoc citreum

ncbi_strain_identifiers: CIRM-BIA 2091

ncbi_submitter: Brigham Young University


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Subgingival plaque; from a periodontal pocket at least 6mm deep

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Melbourne Dental School, University of Melbourne


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: terrestrial

ncbi_organism_name: Acinetobacter ursingii


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Syntrophorhabdus sp.


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain

ncbi_isolation_source: brines of olives

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Instituto de la Grasa-CSIC


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Sedimenticola selenatireducens DSM 17993

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: feces


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China: Jiangmen City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Ares Genetics


ncbi_country: China: Guangzhou

ncbi_organism_name: Laribacter hongkongensis

ncbi_submitter: Zhujiang Hospital


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Bretagne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: USA: WA

ncbi_organism_name: Bordetella hinzii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: India: Bhubaneswar

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National Institute of Science Education and Research


ncbi_country: Hong Kong

ncbi_organism_name: Vibrio parahaemolyticus VIP4-0439

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus VIP4-0439


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Shewanella canadensis

ncbi_submitter: Third Institute of Oceanography, State of Oceanic Administration


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: JCVI


ncbi_country: Kazakhstan: Aktobe

ncbi_isolation_source: tissue

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_country: United Kingdom

ncbi_isolation_source: soil

ncbi_organism_name: Corallococcus sp. AB050B

ncbi_submitter: Aberystwyth University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Germany: Cologne

ncbi_isolation_source: throat

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Pakistan: Burewala; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. Bo_21

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Serratia sp. CY56810

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY56810


ncbi_organism_name: Pseudomonas mandelii

ncbi_submitter: Vilnius University


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Dourados

ncbi_submitter: LNCC


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Bacteroides sp. KG122

ncbi_submitter: University of Florida


ncbi_organism_name: Terriglobus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Myroides sp. C6-3

ncbi_submitter: Yangzhou University


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Streptomyces sp. NPDC057697

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Sardar Patel University, V.V.Nagar


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: NanJing University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Rhodothermales bacterium


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Puerto Rico

ncbi_isolation_source: internal stem tissue

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bartonella sp. AA6HLJMS

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_country: Thailand

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Enterobacter sp. KB-221C9

ncbi_submitter: aphp


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Parasutterella excrementihominis


ncbi_country: United Kingdom: Gloucestershire

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in a breeding trial plot

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: NBRI 33N

ncbi_submitter: CSIR-NBRI


ncbi_country: USA: AK

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia sp. MOD1-EC6096

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Thioalkalivibrio sp. ALE11

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease swab

ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: China: Henan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Bacillus safensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: France: Argenton

ncbi_isolation_source: larvae

ncbi_organism_name: Vibrio pectenicida

ncbi_strain_identifiers: CAIM 594

ncbi_submitter: CIAD, A.C.


ncbi_assembly_name: Rumen uncultured genome RUG13385

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: not provided

ncbi_organism_name: Streptococcus mutans


ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cobetia sp. Ld8

ncbi_submitter: Station Biologique de Roscoff


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica bacterium RIFCSPLOWO2_01_FULL_50_24


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Usitatibacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom: Manchester

ncbi_isolation_source: Keratitis

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_assembly_name: Salmonella enterica CVM N50430 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Opitutia bacterium UBA4506

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA4506


ncbi_country: Australia: Brisbane

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Borreliella afzelii

ncbi_strain_identifiers: PWat

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Serratia nevei

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Lund University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Sutterella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__environmental samples;s__uncultured Patescibacteria group bacterium


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: University of Cambridge


ncbi_country: Spain: Barcelona

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter sp. NIPH 1958

ncbi_strain_identifiers: NIPH 1958

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: MI

ncbi_isolation_source: brain

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Cambodia

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Methylobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Richmond Mine C75 location

ncbi_organism_name: Leptospirillum ferriphilum

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_assembly_name: Rumen uncultured genome RUG12467

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shantou University Medical College


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 45052_4

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_country: United Kingdom:Scotland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Rheinheimera sp.

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Helicobacter rodentium


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: Czech Republic

ncbi_isolation_source: bodily cavity

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Brazil: Rio de Janeiro city

ncbi_isolation_source: From patient ssociated to Home Care assistance

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LNCC


ncbi_isolation_source: eye drainage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: JCVI


ncbi_organism_name: Aliivibrio sp.

ncbi_submitter: University of Southern California


ncbi_isolate: pure

ncbi_isolation_source: Paddy field; Sungai Manik; Malaysia

ncbi_organism_name: Cupriavidus sp. USMAHM13

ncbi_submitter: Universiti Sains Malaysia


ncbi_organism_name: Bordetella holmesii CDC-H809-BH


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Limosilactobacillus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Xiangtan

ncbi_isolation_source: urine

ncbi_submitter: University College London (UCL)


ncbi_country: Kenya

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Candidatus Obscuribacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;x__unclassified Candidatus Obscuribacter;s__Candidatus Obscuribacter sp.


ncbi_organism_name: Lactobacillus intestinalis


ncbi_country: Norway

ncbi_isolation_source: raw chicken

ncbi_organism_name: Pseudomonas sp. MF5691

ncbi_submitter: Nofima


ncbi_country: Germany

ncbi_isolation_source: cattle

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_strain_identifiers: CVUAS 10109

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_organism_name: Streptococcus agalactiae COH1

ncbi_submitter: TIGR


ncbi_country: India

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Bacillus sp. JJ1764

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JJ1764


ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: gastric antrum

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Nottingham


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: Coriobacteriaceae bacterium BV3Ac1

ncbi_submitter: JCVI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 994

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_submitter: Nankai University


ncbi_country: USA: VA

ncbi_isolation_source: stream sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: NECK SKIN

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: NECK SKIN;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 307

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: SNUC 1114

ncbi_submitter: University of Calgary


ncbi_organism_name: Streptomyces griseoaurantiacus

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Haemophilus sp. UMB1048

ncbi_submitter: Loyola University Chicago


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: Urinary Tract Infection

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Leptolyngbya sp. PL-A2

ncbi_submitter: Peking University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Russia: North Ossetia

ncbi_isolation_source: cheese

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Thermomicrobiales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: patient

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolate: Pectobacterium versatile A792-S21-N17

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium versatile

ncbi_strain_identifiers: Pectobacterium versatile A792-S21-N17

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Antarctica: Robinson Ridge

ncbi_isolation_source: pooled data from three different soil samples

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: nstitute of Tibetan Plateau Research, Chinese Academy of Sciences


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Actinomyces sp.

ncbi_submitter: Washington University in Saint Louis