ncbi_country: Greece: Preveza

ncbi_isolation_source: roots

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Agricultural University of Athens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_assembly_level: Contig

ncbi_country: USA: Seatle

ncbi_isolation_source: clinical

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IFSC USP


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Technical University of Denmark


gtdb_representative: t

ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Pseudolabrys sp. Root1462

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_country: France: APHM

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Stenotrophomonas geniculata


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Kamakura Women's University


ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rothia kristinae

ncbi_strain_identifiers: GM

ncbi_submitter: Kingston University London, United Kingdom


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Switzerland

ncbi_isolation_source: wild boar feces

ncbi_submitter: University of Zurich


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia faecis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-WM

ncbi_organism_name: Isosphaera sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: North-West University


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Broiler parent92

ncbi_submitter: University of Copenhagen


ncbi_country: Costa Rica

ncbi_isolate: Pent

ncbi_organism_name: Pantoea sp. Pent

ncbi_strain_identifiers: Pent

ncbi_submitter: Ohio State University


ncbi_country: South Korea

ncbi_isolation_source: sea water

ncbi_organism_name: Photobacterium sp. TY1-4

ncbi_submitter: Korea Institute of Ocean Science & Technology


ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium lyxosi

ncbi_refseq_category: reference genome

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences

ncbi_type_material_designation: assembly from type material


ncbi_country: United Kingdom:Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Walter Reed Army Medical Center

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Miami University


ncbi_country: Canada: Ontario

ncbi_isolation_source: plant matter [ENVO:01001121]

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: USA: MN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Cellvibrio sp. UBA7661

ncbi_submitter: University of Queensland


ncbi_isolation_source: Herd 214

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: SNUC 4113

ncbi_submitter: University of Calgary


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: cervical

ncbi_organism_name: Corynebacterium sp. HMSC064E07

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Case Western Reserve University


ncbi_country: Canada: Alberta;Kinsella

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Tanzania

ncbi_isolation_source: nasal swabs from HIV infected patient

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Bergen


ncbi_country: Colombia

ncbi_isolation_source: Peritoneal fluid

ncbi_organism_name: Staphylococcus aureus DAR5806

ncbi_submitter: Broad Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: South Carolina

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Instituto de Higiene


gtdb_type_species_of_genus: t

ncbi_organism_name: Vogesella indigofera

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Hyphomicrobiaceae bacterium UBA4668


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Southlakia epibionticum

ncbi_submitter: University of Washington, Mougous Lab

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Southlakia;s__Candidatus Southlakia epibionticum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Southlakia;s__Candidatus Southlakia epibionticum


ncbi_country: Australia: Brisbane

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UQCCR


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2024EL-00222


ncbi_organism_name: Rhizobium sp. AN68

ncbi_submitter: University of Massachusetts Amherst


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_isolation_source: Nodule

ncbi_organism_name: Mesorhizobium amorphae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus CHAP6035


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Nymphalis c-album


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Seoul Metropolitan Government Research Institute of Public Health and Environment


ncbi_organism_name: Anaplasma ovis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: University of York


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fidelibacterota bacterium UBA2128

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA2128


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_submitter: Wits University


ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_country: Spain

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Austria: Pond-1

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. QLW-P1DATA-2

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Desulforamulus aquiferis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Australia: Melbourne

ncbi_isolation_source: other

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Italy: Venice Lagoon

ncbi_isolation_source: marine sediment

ncbi_organism_name: Halioglobus sp.

ncbi_submitter: National Institute of Oceanography and Applied Geophysics - OGS


ncbi_country: China

ncbi_organism_name: Enterobacter cancerogenus YZ1

ncbi_submitter: BGI Research Institution


ncbi_country: Germany: Munich

ncbi_isolation_source: throat

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin47

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: MDV bin47


ncbi_isolation_source: Colon


ncbi_organism_name: Halomonas beimenensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Thailand: Nakhonsawan

ncbi_isolation_source: rice field soil; drought soil/ flooding soil

ncbi_organism_name: Streptomyces sp. HPF1205

ncbi_submitter: King Mongkut's Institue of Technology Ladkrabang


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0902

ncbi_submitter: Broad Institute


ncbi_country: France: Strasbourg

ncbi_isolation_source: Catheter

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: Russia: Moscow (import from Dagestan)

ncbi_isolation_source: patient

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Research Institute for Plague Control


ncbi_country: Italy

ncbi_submitter: University of Bologna


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: USA

ncbi_isolation_source: Insect

ncbi_organism_name: Rickettsia endosymbiont of Labidopullus appendiculatus

ncbi_submitter: University of Liverpool


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: University of Manitoba


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Actinospica acidiphila

ncbi_submitter: University of Illinois


ncbi_country: South Korea

ncbi_isolation_source: pig slaughterhouse chilling room floor

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_country: Japan: Toyama

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus agalactiae GB00992

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 414

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SNUC 2430

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Sulfitobacter sp. UBA3610

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: China: Beijing

ncbi_submitter: General Hospital


ncbi_assembly_level: Chromosome

ncbi_organism_name: Citrobacter portucalensis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Zhejiang Chinese Medical University


ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from dieased colony 6

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Florida


ncbi_organism_name: Tenacibaculum dicentrarchi

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: blood

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Shaoguan City; Guangdong

ncbi_isolation_source: Karst cave soil samples

ncbi_organism_name: Agromyces cavernae

ncbi_strain_identifiers: SYSU K20354

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: South Africa: Prince Msheyeni

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0016

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Prevotella sp.


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_isolation_source: blood sample taken from a clinical pediatric case of invasive pneumococcal disease

ncbi_organism_name: Streptococcus pneumoniae PNI0159

ncbi_submitter: Washington University


ncbi_country: Sweden: Uppsala

ncbi_isolate: MAG 62

ncbi_isolation_source: propionate fed chemostat

ncbi_strain_identifiers: MAG 62

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-00250

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Australia

ncbi_isolation_source: ear

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Bioplatforms Australia


ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Peptacetobacter sp.


ncbi_organism_name: Candidatus Cryptobacteroides bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: PVC group bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus HI010

ncbi_submitter: Broad Institute


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Escherichia coli

ncbi_submitter: APC Microbiome Ireland


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-1099

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Agathobacter rectalis


ncbi_submitter: The University of Texas at San Antonio


ncbi_country: USA: HI

ncbi_isolation_source: seawater

ncbi_organism_name: Photobacterium angustum

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: the seqafrica consortium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomadura hallensis

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Schaalia dentiphila

ncbi_strain_identifiers: NCTC 9931

ncbi_submitter: University of Malaya


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1848


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: MD

ncbi_isolation_source: chicken breast

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: fermentation of straw

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Jiangnan University


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli 907701

ncbi_submitter: Washington University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Thailand: Gulf of Thailand; Bangpoo; Samut Prakan

ncbi_isolation_source: Aquatic bird feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Faculty of Science, Chulalongkorn University


ncbi_country: China: Guangzhou

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus kribbensis

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC020571

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacilli bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Italy

ncbi_isolation_source: meat deli product

ncbi_organism_name: Listeria monocytogenes


ncbi_country: China: Zhengzhou

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Detroit

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Antarctica

ncbi_organism_name: Glaciimonas sp. PAMC28666

ncbi_submitter: Korea University


ncbi_organism_name: Camelimonas fluminis

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Streptomyces sp. NPDC051362


ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: Germany: Dresden

ncbi_organism_name: Wohlfahrtiimonas chitiniclastica

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Poland

ncbi_submitter: Medical University of Bialystok

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: Ghana: Ashiaman Market; Accra

ncbi_isolation_source: wagashi (unripened soft cheese)

ncbi_strain_identifiers: ARWAII

ncbi_submitter: Alborada Research Fund

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus infantarius

ncbi_submitter: BGI-Shenzhen


ncbi_country: Bangladesh

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: Colombia: Tolima

ncbi_isolation_source: CALDAS

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Group of Cytogenetics, Phylogeny and Population Evolution, University of Tolima


ncbi_country: China: Luochuan

ncbi_organism_name: Bacillus sp. CCNWLCWHY013

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CCNWLCWHY013


ncbi_organism_name: Polynucleobacter necessarius

ncbi_submitter: UNIVERSITY OF BRITISH COLUMBIA, DEPT BOTANY


ncbi_organism_name: Limnobacter sp.

ncbi_submitter: BiOSSE


ncbi_country: Russia

ncbi_isolation_source: Lichen

ncbi_organism_name: Lichenifustis flavocetrariae

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_isolation_source: oral cavity- mouth

ncbi_organism_name: Porphyromonas gingivalis F0566

ncbi_submitter: Washington University


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6498

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: China: Beijing; Guilin

ncbi_isolation_source: sediment of karst cave

ncbi_organism_name: Flavobacterium sp. LHD-85

ncbi_submitter: College of life sciences


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: China

ncbi_isolation_source: plants

ncbi_organism_name: Nocardioides lijunqiniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Vibrio owensii

ncbi_submitter: National Autonomous University of Mexico


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Acetobacter tropicalis

ncbi_submitter: Brigham Young University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium RIFOXYA1_FULL_44_8


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Wanju

ncbi_isolation_source: soybean

ncbi_organism_name: Flavobacterium endoglycinae

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: Norway

ncbi_isolation_source: skin lesion

ncbi_organism_name: Tenacibaculum finnmarkense genomovar ulcerans

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 11

ncbi_strain_identifiers: CHS 11

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 11


ncbi_country: Germany

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Harryflintia acetispora

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: Glenoid explant

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: Netherlands

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Sphingomonas sp. Leaf231

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Instituto de Biotecnologia


ncbi_country: Hong Kong

ncbi_isolation_source: Stool

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Cellulosilyticaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Southern Oregon Univeristy


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Department of Infectious Diseases, National Center for Global Health and Medicine


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__environmental samples;s__uncultured candidate division Zixibacteria bacterium


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Flagellimonas beolgyonensis

ncbi_submitter: Shantou University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_genome_representation: partial

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: Leptospira interrogans

ncbi_strain_identifiers: 1A MS

ncbi_submitter: Universidade Federal de Pelotas


ncbi_organism_name: Rhodococcus jostii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. SAL04177

ncbi_submitter: Zhejiang university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: University of Dhaka

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Streptomyces sp. cg35

ncbi_submitter: Hunan University of Science and Technology


ncbi_assembly_name: freshwater MAG --- KT_bin-0320

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: wound swab

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: blood

ncbi_strain_identifiers: ICE 2

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: unirio


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: compost

ncbi_organism_name: Rhodococcus rhodochrous

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter gerneri


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: SCOPE


ncbi_assembly_name: Rumen uncultured genome RUG13175

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Lilbub from private home

ncbi_organism_name: Roseburia sp.

ncbi_submitter: AnimalBiome


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_country: China: Sansha

ncbi_isolation_source: seawater

ncbi_organism_name: Tateyamaria sp. syn59

ncbi_submitter: State Key Laboratory of Marine Enviromment Laboratory


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: UNIVERSITY OF BERN


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: San Francisco

ncbi_submitter: Santa Clara University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: China: Xinjiang

ncbi_isolation_source: abortions

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Chinese Animal Health and Epidemiology Center


ncbi_country: Czech Republic: Prostejov

ncbi_isolation_source: mastitis milk

ncbi_organism_name: Gordonia paraffinivorans

ncbi_submitter: Veterinary Research Institute


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 2-210-07_S4_C3

ncbi_submitter: IGS


ncbi_submitter: East China Normal University


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: USFDA


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Wenzhou Medical University


ncbi_country: Pakistan: Sargodha district of the Punjab province

ncbi_isolation_source: sheep brocho-alveolar lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Georgia


ncbi_assembly_name: Rumen uncultured genome RUG10201

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Democratic Republic of the Congo: Lwiro

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: wAnM

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Mexico: Gulf of Mexico

ncbi_organism_name: Pseudomonas sp. GOM6

ncbi_submitter: Consortium for the Investigation of Gulf of Mexico (CIGOM)


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: China: Yangzhou

ncbi_isolation_source: chicken meat

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-106

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Rhodospirillales bacterium

ncbi_strain_identifiers: new MAG-106

ncbi_submitter: Micoorganism


ncbi_organism_name: Rickettsia oklahomensis

ncbi_strain_identifiers: Oklahoma 10

ncbi_submitter: North Carolina State University, College of Veterinary Medicine


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: Estonia: Tartu

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecium EnGen0014

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces sp. NPDC048269

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nagoya University


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: Faeces


ncbi_country: China: Shanghai

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Huashan Hospitial of Fudan University


ncbi_isolation_source: single cell of Braarudosphaera bigelowii

ncbi_submitter: National Institute for Environmental Studies

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;x__Oscillatoriophycideae;o__Chroococcales;f__Aphanothecaceae;g__Candidatus Atelocyanobacterium;s__Candidatus Atelocyanobacterium thalassae;x__cyanobacterium endosymbiont of Braarudosphaera bigelowii


ncbi_organism_name: Paenibacillus eucommiae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ares Genetics


ncbi_organism_name: Acetobacter orientalis

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: Gujarat Biotechnology University


ncbi_organism_name: Albibacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: McGill University


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_assembly_name: Pelosinus fermentans DSM 17108_v1.1

ncbi_country: USA: Washington

ncbi_isolation_source: groundwater

ncbi_organism_name: Pelosinus fermentans DSM 17108

ncbi_submitter: ORNL


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: freshwater MAG --- Loc090519-8-7m_bin-1979

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_assembly_name: freshwater MAG --- AM-2014-D5_bin-232

ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_organism_name: Methylorubrum extorquens DM4

ncbi_submitter: Genoscope

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Germany

ncbi_organism_name: Corynebacterium xerosis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Infection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Longitarsus flavicornis


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa25

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_organism_name: Levilinea sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Canada: Douglas Channel and Hecate Strait

ncbi_isolation_source: dilbit-coated clay beads in seawater

ncbi_organism_name: Marinosulfonomonas sp.

ncbi_submitter: National Research Council Canada


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Memphis; TN

ncbi_isolation_source: stool sample

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: Brazil

ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: University of Cambridge


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Corynebacterium otitidis ATCC 51513

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Streptomyces sp. NPDC048399

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_country: Iraq: Ibn Sina

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii IS-235

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8381

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: USA: California; Modesto

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Universidad Antonio Narino


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Alberta


ncbi_country: USA: California

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 43

ncbi_submitter: USDA-ARS


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter sp. TG19627

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: France: Paris

ncbi_isolation_source: Intestine

ncbi_organism_name: Delftia tsuruhatensis

ncbi_submitter: Institut Pasteur de Paris


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Gilvibacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S26

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Candidatus Flemingiibacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Flemingiibacterium;x__unclassified Candidatus Flemingiibacterium;s__Candidatus Flemingiibacterium sp.


ncbi_organism_name: Mycobacterium colombiense

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_assembly_name: Rumen uncultured genome RUG10127

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Antarctica: Robinson Ridge

ncbi_isolation_source: pooled data from three different soil samples

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: nstitute of Tibetan Plateau Research, Chinese Academy of Sciences


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Lentisphaeraceae bacterium


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Boston; MA

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio scophthalmi

ncbi_submitter: Ewha Womans University


ncbi_isolation_source: tooth

ncbi_organism_name: Corynebacterium dentalis

ncbi_submitter: URMITE


ncbi_submitter: Centre for Microbiome Research


ncbi_country: New Zealand: North Canterbury; near Tuahiwi

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Canterbury


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_submitter: Quadram Institutte


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: CAU


ncbi_organism_name: uncultured Haemophilus sp.


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Aeromonas simiae

ncbi_submitter: UCONNMISEQ


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Candidatus Onthovivens sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;g__Candidatus Onthovivens;x__unclassified Candidatus Onthovivens;s__Candidatus Onthovivens sp.


ncbi_country: China: Sichuang

ncbi_isolation_source: pig viscera

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia sp. MSMB1826

ncbi_submitter: Northern Arizona University


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Blautia faecis

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA

ncbi_organism_name: Bordetella bronchiseptica MBORD632

ncbi_submitter: JCVI


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Asaia siamensis

ncbi_submitter: Ghent University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Switzerland

ncbi_isolation_source: skin of a pig

ncbi_organism_name: Macrococcus armenti

ncbi_submitter: University of Bern


ncbi_country: Turkey

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans U2A

ncbi_submitter: Cornell University


ncbi_isolation_source: not provided

ncbi_organism_name: Anaeroglobus geminatus

ncbi_submitter: EMG


ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: Tang lab


ncbi_country: USA: Texas

ncbi_isolation_source: clinical

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar 43:z4,z32:-


ncbi_organism_name: Microbacterium marmarense

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: South Korea:Seoul

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: hospital

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Variovorax sp. UC74_104

ncbi_submitter: The Connecticut Agricultural Experiment Station


ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Bioplatforms Australia


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Canada: Quebec City

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Australia: Brisbane; QLD; University of Queensland

ncbi_isolation_source: AOM-Mn bioreactor day 314

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: California

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lysinibacillus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Chitinophagia bacterium

ncbi_submitter: Clemson University


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG12674

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France

ncbi_submitter: INSTITUT DE GENETIQUE ET MICROBIOLOGIE


ncbi_submitter: University of Pittsburgh


ncbi_country: South Africa:Cape Town

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster;s__Enterocloster hominis (ex Liu et al. 2021)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Raoultella sp. BIGb0399

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Wind Cave National Park; South Dakota

ncbi_organism_name: Brucella pituitosa

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Quadram Institutte


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Philippines

ncbi_submitter: Philippine Genome Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Hominilimicola sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Guyparkeria sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Dashan Tin-Zinc Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: AL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Colorado State University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_country: USA: Texas; College Station

ncbi_isolation_source: retropharyngeal lymph node abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae SK7461

ncbi_submitter: Read Laboratory, Emory University


ncbi_organism_name: Shuttleworthella satelles

ncbi_submitter: EMG


ncbi_organism_name: Lapillicoccus jejuensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Streptomyces syringium

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Northeastern University


ncbi_country: China: Shandong

ncbi_isolation_source: commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: groundwater

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridium tertium

ncbi_submitter: University of Parma


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella boydii

ncbi_submitter: JCVI


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: University of Liverpool


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial alveolar lavage

ncbi_organism_name: Staphylococcus aureus M0918

ncbi_submitter: Broad Institute


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Limosilactobacillus alvi

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: patient with pneumococcal infection

ncbi_strain_identifiers: Canada MDR_19F

ncbi_submitter: Ontario Agency for Health Protection and Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pneumoniae;x__Streptococcus pneumoniae str. Canada MDR_19F


ncbi_country: Finland

ncbi_isolation_source: Fecal samples from slaughtered sheep

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich, Vetsuisse Faculty


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Chamaesiphon sp. 338R_metabat_118

ncbi_submitter: EPFL


ncbi_country: Bangladesh: Chittagong

ncbi_isolation_source: wastewater

ncbi_submitter: Bangladesh Council of Scientific and Industrial Research (BCSIR)


ncbi_country: Laos

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Bern


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Neisseria elongata

ncbi_submitter: EMG


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China

ncbi_organism_name: Klebsiella aerogenes

ncbi_strain_identifiers: eae

ncbi_submitter: Beijing Honor Tech Co.,Ltd


ncbi_country: USA: New York; NY; NYU Langone Medical Center

ncbi_isolation_source: Laboratory mutagenesis

ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: TAH 10;84 dMrvR

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcaceae bacterium OF28-12pH9A

ncbi_submitter: BGI-Shenzhen


ncbi_country: Czechoslovakia

ncbi_isolation_source: water

ncbi_organism_name: Yersinia aldovae


ncbi_isolation_source: unknown

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Davis

ncbi_isolation_source: feces

ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: University of California, Davis


ncbi_country: Canada: Quebec City

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Acetothermia bacterium UBA4777

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Acetothermia bacterium UBA4777


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0286

ncbi_submitter: Broad Institute


ncbi_country: Czech Republic: Mohelnicka reserve; Mohelno

ncbi_isolation_source: sediment with water of forest creek

ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: National Institute of Public Health


ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: Tennessee

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: Poland

ncbi_organism_name: Escherichia coli

ncbi_submitter: Biobank Lab, Department of Molecular Biophysics, Faculty of Biology and Environmental Protection, Univeristy of Lodz, Poland


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_country: Germany: Goettingen

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Germany: Greifswald

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_country: Nigeria

ncbi_submitter: Igbinedion University Okada Edo state Nigeria


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 22704


ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Throat swab 1

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_country: China: Heilongjiang

ncbi_isolation_source: food

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Morocco: El Attaouia region-El Kelaa des Sraghna

ncbi_isolation_source: rhizospheric soil of potato

ncbi_organism_name: Streptomyces sp. Z26

ncbi_submitter: University of Tuebingen


ncbi_country: China: Zhejiang

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Mesorhizobium sp. M1233

ncbi_submitter: Washington State University


ncbi_organism_name: Formosa haliotis

ncbi_submitter: Graduate School of Bioresources, Mie University


ncbi_organism_name: Microcoleus sp. AT9b-C2

ncbi_submitter: Palacky University Olomouc


ncbi_country: Ireland

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1121032

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Marisediminitalea sp.

ncbi_submitter: Xiamen University


ncbi_country: Spain

ncbi_isolation_source: Mussels

ncbi_organism_name: Halarcobacter mediterraneus

ncbi_submitter: Universitat Rovira i Virgili


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: sputum

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Campylobacter devanensis

ncbi_submitter: University of Aberdeen


ncbi_country: Denmark

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Minnesota


ncbi_isolate: Faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Marinilactibacillus psychrotolerans


ncbi_organism_name: Leyella stercorea

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Mycolicibacterium litorale

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Deep-Sea Bioresource Research Group , Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_organism_name: Bartonella sp. C271

ncbi_submitter: University of Salford


ncbi_organism_name: Moritella viscosa

ncbi_submitter: Memorial University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: USDA-ARS


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: MOX O

ncbi_isolation_source: methanogen symbiont from mussel gill epithellium

ncbi_strain_identifiers: MOX O

ncbi_submitter: CRC 1182 Origin and Function of Metaorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__Bathymodiolus brooksi methanotrophic gill symbiont


ncbi_organism_name: Acinetobacter sp. 161(2023)

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_organism_name: Globicatella sanguinis NBRC 15551

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Tochigi

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas cannabis pv. cannabis

ncbi_strain_identifiers: NCPPB 3753

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Hungateiclostridiaceae bacterium KB18

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: Australia: Victoria

ncbi_isolation_source: Sputum sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_country: Russia

ncbi_isolation_source: saliva from healthy adult female

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Colwellbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;x__unclassified Candidatus Colwellbacteria;s__Candidatus Colwellbacteria bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wadsworth Center - NYS DOH


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China

ncbi_organism_name: Paenibacillus harenae DSM 16969

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus harenae;x__Paenibacillus harenae DSM 16969


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Helicobacter pylori 35A

ncbi_submitter: Baylor College of Medicine


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lejia lagoon

ncbi_isolation_source: soil vegetation layer

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Iowa

ncbi_isolation_source: Infected agricultural plant

ncbi_organism_name: Erwinia tracheiphila

ncbi_submitter: Iowa State University


ncbi_organism_name: Christiangramia sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_country: Slovakia

ncbi_isolation_source: spiced meat

ncbi_organism_name: Cronobacter condimenti 1330

ncbi_submitter: Nestle Institute of Health Sciences


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Escherichia coli EC16409

ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_isolation_source: clinical

ncbi_submitter: FDA/CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:-;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM 43481


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Sysuimicrobium calidum

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium calidum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Sysuimicrobium;s__Candidatus Sysuimicrobium calidum


ncbi_country: Germany: Donaustauf

ncbi_isolation_source: urine [UBERON:0001088]

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Spain: Asturias

ncbi_isolation_source: Cabrales Cheese

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: IPLA-CSIC


ncbi_isolate: human

ncbi_organism_name: Mycobacterium lacus

ncbi_strain_identifiers: DSM 44577;human

ncbi_submitter: Intitut Pasteur Paris


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Kyushu University


ncbi_country: Brazil: Porto Alegre

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: UNIVERSIDADE FEDERAL DE CIENCIAS DA SAUDE DE PORTO ALEGRE


ncbi_organism_name: Microcoleus sp. M2-B5

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Escherichia coli A25922R

ncbi_submitter: Washington University


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Puia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: metagenome

ncbi_organism_name: Ruminococcaceae bacterium UBA1375

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG11347

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Ferrimicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: MN

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Minnesota


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: Caecum


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: India: Guntur; Andhra Pradesh

ncbi_isolation_source: Chilli rhizosphere

ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: University of Delhi


ncbi_organism_name: Legionella pneumophila subsp. raphaeli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Lebanon

ncbi_isolation_source: chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_country: USA: PA

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-372

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_strain_identifiers: new MAG-372

ncbi_submitter: Micoorganism


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF15-31

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AF39-16AC

ncbi_submitter: BGI


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: blood

ncbi_submitter: University of Antioquia