ncbi_organism_name: Desulfobacterota bacterium M19

ncbi_submitter: IUEM


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii UH19608

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: AAFC


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_assembly_level: Complete Genome

ncbi_country: Thailand

ncbi_isolation_source: Poultry Meat

ncbi_submitter: Mahidol University


ncbi_country: China

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_organism_name: Mycobacterium sp. 155

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: EMG


ncbi_country: United Kingdom: Bristol

ncbi_isolation_source: child cystic fibrosis patient; groin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Negativibacillus sp.

ncbi_submitter: Washington University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__unclassified Negativibacillus;s__Negativibacillus sp.


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: NH; DHMC

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Dartmouth College


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Rhizobium sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Haloactinopolyspora sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus hirae ATCC 9790

ncbi_strain_identifiers: ATCC 9790

ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus hirae;x__Enterococcus hirae ATCC 9790

ncbi_type_material_designation: assembly from type material


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus


ncbi_isolation_source: rabbit gut


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Northeast Brazilian mangrove

ncbi_isolation_source: estuarine mud [ENVO:00002160]

ncbi_organism_name: Bacillus vallismortis

ncbi_submitter: Universidade Federal do Ceara (UFC)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EBI


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE2

ncbi_organism_name: Fluviicola sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BGI-Shenzhen


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universiteit Gent


ncbi_country: United Kingdom

ncbi_isolation_source: Lung

ncbi_organism_name: Streptococcus suis


ncbi_country: Indonesia: West Java

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: cBio Corp


ncbi_country: Norway

ncbi_isolation_source: Sheep faeces

ncbi_submitter: NTNU


ncbi_country: Puerto Rico: Cabo Rojo

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Flavobacterium psychroterrae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Queensland


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Sphingopyxis terrae subsp. ummariensis


ncbi_organism_name: Lachnospiraceae bacterium CF03-11TA


ncbi_country: USA

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: food

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: SAR86 cluster bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Livestock Improvement Corporation


ncbi_country: Switzerland

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_country: Thailand: Sakon Nakhon

ncbi_submitter: Thailand-Japan Research Collaboration Center on Emerging and Re-emerging infections, Research Institute for Microbial Diseases, Osaka University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 169 - depth 10m

ncbi_organism_name: Nocardioides sp. REDSEA-S34_B5

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: Hong Kong: Jardine s Lookout

ncbi_isolation_source: garden soil

ncbi_organism_name: Metapseudomonas lalkuanensis

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Kangiellaceae bacterium


gtdb_type_species_of_genus: t

ncbi_country: Russia

ncbi_isolation_source: Bitter-1 soda lake sediments

ncbi_organism_name: Chitinivibrio alkaliphilus ACht1

ncbi_refseq_category: reference genome

ncbi_submitter: Centre Bioengineering RAS


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Lacrimispora sp.


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_isolation_source: not known


ncbi_country: India

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Sweden

ncbi_isolation_source: Industry

ncbi_organism_name: Corynebacterium sp. CCUG 70398

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Malawi: Blantyre

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_isolation_source: rumen

ncbi_organism_name: Ruminococcaceae bacterium UBA2857

ncbi_submitter: University of Queensland


ncbi_country: Armenia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Switzerland: Basel

ncbi_isolation_source: clinical sample

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_country: Ethiopia: Amhara; North Gondar

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Viet Nam

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: China: Qingdao

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio amylolyticus

ncbi_submitter: Ocean University of China


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Michigan

ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Elusimicrobia bacterium


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Argentina

ncbi_isolation_source: cheese

ncbi_submitter: IBR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis;sb__Lactococcus lactis subsp. lactis;x__Lactococcus lactis subsp. lactis bv. diacetylactis


ncbi_submitter: Soochow University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia: Medellin

ncbi_submitter: Alianza científico - tecnológica Nucleosensor-TB


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Iran: Karaj

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: terrestrial

ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_isolation_source: Bioreactor seeded with sediment from a rice paddy field (Vercelli)

ncbi_organism_name: uncultured bacterium

ncbi_submitter: Heleen Ouboter


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Switzerland

ncbi_isolation_source: grassland soil

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Bacillus subtilis MB73/2

ncbi_submitter: Intercollegiate Faculty of Biotechnology UG&MUG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;x__Bacillus subtilis MB73/2


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Roseovarius sp.

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_strain_identifiers: Bir 238


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Asaia bogorensis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: USA: Manhattan; KS

ncbi_isolation_source: Probiotic

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kansas State University


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Alishewanella agri

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Mitsuokella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of three-weeks old elephant

ncbi_organism_name: Clostridiales bacterium UBA1701

ncbi_submitter: University of Queensland


ncbi_country: Canada: Southern Alberta

ncbi_isolation_source: Environment; poultry barn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_assembly_name: freshwater MAG --- Loc090519-5m_bin-1396

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Czech Republic: Ostrava

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Charles University in Prague


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Acinetobacter baumannii 25253_4

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_submitter: Lund University


ncbi_organism_name: Candidatus Multivoradales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;x__unclassified Candidatus Multivoradales;s__Candidatus Multivoradales bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_country: China: Changsha

ncbi_isolation_source: liver abscess

ncbi_submitter: Beijing genomics institute


ncbi_isolation_source: Human feces

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: The University of Tokyo


ncbi_country: China: Beijing

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_submitter: Beijing University of Chemical Technology


ncbi_organism_name: Microbacterium hominis NBRC 15708

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: Clinical; cystic fibrosis patient

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Jonquetella sp.

ncbi_submitter: EMG


ncbi_country: Germany: Hamburg

ncbi_organism_name: Nitrosomonas aestuarii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1472 from squamous cell carcinomas patient MST012

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Queensland


ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Dorea sp. 5-2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Brevifilum fermentans

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: cattle feces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Malan

ncbi_organism_name: Deinococcus wulumuqiensis R12

ncbi_submitter: BGI-Qingdao


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Xinjiang

ncbi_isolation_source: sediment of salty lake

ncbi_organism_name: Cyclobacterium salsum

ncbi_strain_identifiers: SYSU L10167

ncbi_submitter: Xinjiang Institute of Ecology and Geography


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_submitter: JPIAMR ARMIS


ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Costa Rica

ncbi_isolation_source: wastewater

ncbi_submitter: Universidad de Costa Rica


ncbi_country: South Korea

ncbi_organism_name: Xenorhabdus nematophila

ncbi_submitter: Kyungpook National University


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Kerfeldbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;x__unclassified Candidatus Kerfeldbacteria;s__Candidatus Kerfeldbacteria bacterium


ncbi_organism_name: Conexibacter arvalis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces decoyicus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Rahnella aceris

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Aeromonas veronii


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Kurume University School of Medicine


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 16d patty soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Peking university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: INTECH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Staphylococcus aureus S1

ncbi_submitter: Geneva University Hospitals, Genomic Research Laboratory.


ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_country: China

ncbi_isolation_source: cave soil

ncbi_organism_name: Paenibacillus antri

ncbi_strain_identifiers: SYSU K30003

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Amycolatopsis sp. NPDC026612

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Fusobacterium nucleatum subsp. nucleatum

ncbi_strain_identifiers: ChDC F311

ncbi_submitter: Chosun University


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: Spain: Cala Ratjada Harbor; Mallorca Island; Balearic Islands

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Loktanella sp. 5RATIMAR09

ncbi_submitter: Univesitat de les Illes Balears (UIB)


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Belgium

ncbi_isolation_source: mastitis

ncbi_submitter: KOlimastIR


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Guatemala

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_organism_name: Pseudoxanthomonas mexicana


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Thiotrichaceae bacterium

ncbi_submitter: Harvard University


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Granulicella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Canada: Lethbridge

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Calgary


ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Idiomarina sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: India

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Hornefia butyriciproducens


ncbi_organism_name: Dokdonella sp.


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Georgia Tech


ncbi_country: India: Sundarban; West Bengal

ncbi_isolation_source: Mud Samples

ncbi_organism_name: Salinicoccus roseus

ncbi_submitter: The University of Burdwan


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_assembly_name: freshwater MAG --- Loc090721-8-6m_bin-0944

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Chile: Valdivia

ncbi_isolation_source: Poultry meat

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Universidad Austral de Chile


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_country: Germany

ncbi_isolation_source: sourdough

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: CERELA-CONICET


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B364;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: UANTW


ncbi_country: China: Harbin

ncbi_isolation_source: seed

ncbi_organism_name: Bacillus sp. NEAU-16

ncbi_submitter: School of life science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. NEAU-16


ncbi_organism_name: Zobellia nedashkovskayae

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: China: Guangdong; Yunfu

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Saraswanti Genomics Institute


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Africa: Ngwelezane

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0057

ncbi_submitter: Broad Institute


ncbi_isolation_source: human skin

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: marine

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: China: Baoding

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Hebei Academy of Agricultural and Forestry Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Psychrobacter sp. S1-30-MNA-CIBAN-0213

ncbi_submitter: University of Florence


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Normandy

ncbi_isolation_source: bronchial aspiration

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_assembly_name: Rumen uncultured genome RUG11716

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Yunnan

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_country: Germany: Thuringia

ncbi_organism_name: Aliarcobacter thereius

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: water

ncbi_organism_name: Candidatus Synechococcus spongiarum

ncbi_submitter: GeneWiz


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Secone University Hospital, Sichuan University


ncbi_country: USA: TN

ncbi_isolation_source: Pork Chop

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_isolation_source: human gut

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of California, Riverside

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Phocaeicola sp.


ncbi_organism_name: Yersinia pestis D182038

ncbi_submitter: State Key Laboratory for Infectious Disease Prevention and Control, Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Rostov-na-Donu

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium falsenii

ncbi_submitter: SRCAMB


ncbi_country: South Africa: KwaZulu-Natal; Verulem

ncbi_isolation_source: oral

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zoonosis Science Center, Uppsala University


ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Legionellales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2603880211 annotated assembly

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus epidermidis M0026

ncbi_submitter: Broad Institute


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: ZUSM

ncbi_submitter: NSU Genome Research Institute (NGRI)


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_assembly_name: Rumen uncultured genome RUG10524

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5278

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5278


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: ballast tank

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Shandong university


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA: IA

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus sp. AFS059628

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS059628


ncbi_organism_name: Streptomyces sp. NPDC056682

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_country: South Korea:Gang-Jin bay

ncbi_isolation_source: sediment

ncbi_organism_name: Antarcticibacterium sp. 1MA-6-2

ncbi_submitter: National Institute of Fisheries Science


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Calditrichia bacterium

ncbi_submitter: Portland State University


ncbi_country: Finland

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: India: Khirganga hotspring; Himachal Pradesh; Northern Hiamayas

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Delhi


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Synechococcus sp. R65.1

ncbi_submitter: University of Montana


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_submitter: The University Hong Kong


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Fusobacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Acinetobacter geminorum

ncbi_submitter: Universidad de Leon


ncbi_assembly_name: freshwater MAG --- Ja_bin-3206

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shandong

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi C


ncbi_organism_name: Polaromonas sp.


ncbi_country: Burkina Faso

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 2001213

ncbi_submitter: IGS


ncbi_country: China: Jiangsu

ncbi_isolation_source: Dead waterfowl

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: Mountain Cheese

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Agroscope


ncbi_submitter: SRCAMB


ncbi_organism_name: Streptomyces sp. NPDC098090

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: Supragingival dental plaque; molar tooth

ncbi_organism_name: Actinomyces sp. oral taxon 414

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;x__unclassified Actinomyces;s__Actinomyces sp. oral taxon 414


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Hospital Universitario La Princesa (Madrid)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: China: Haixi city; Qinghai province

ncbi_isolation_source: Pantholops hodgsonii feces

ncbi_organism_name: Actinomyces sp. 594

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Korean kefir

ncbi_organism_name: Lentilactobacillus kefiri

ncbi_submitter: Konkuk University


ncbi_organism_name: Peptococcaceae bacterium MAG4

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_submitter: School of Medicine, Southeast University


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_assembly_name: freshwater MAG --- Umea3p2_bin-0137

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_country: Chile

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_isolation_source: fecal swab

ncbi_submitter: City University of Hong Kong


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-0637

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mongolia: Lake Dzun Uldziin Nur

ncbi_isolation_source: lake

ncbi_organism_name: Ectothiorhodosinus mongolicus

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_isolation_source: marine

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella sp. 98171

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8629

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Ireland

ncbi_isolation_source: blood


ncbi_country: USA: California

ncbi_isolation_source: crown gall

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: USDA-ARS


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_isolation_source: eye

ncbi_organism_name: Pseudomonas aeruginosa BL17

ncbi_submitter: Broad Institute


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Microcystis sp. LE19-12.2C

ncbi_submitter: University of Michigan


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Xanthobacter autotrophicus

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_assembly_name: freshwater MAG --- Ki1-1-6m_bin-0473

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: USA: CO

ncbi_isolation_source: feces goose

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-G18

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: library

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Shenzhen University


ncbi_organism_name: Lachnospiraceae bacterium ND2006

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaerostipes sp.

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Burkholderia pseudomallei MSHR1153

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_country: Japan: Tokyo

ncbi_isolation_source: Laboratory environment

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Teikyo University Institute of Medical Mycology


ncbi_country: Russia: Bykovsky Peninsula;Polar Fox Lagoon

ncbi_isolation_source: Polar Fox Lagoon sediment taken using 3m corer (60 mm diameter)

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudoalteromonas lipolytica

ncbi_submitter: University of Queensland


ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Cornell University


ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_organism_name: Desulfobulbales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China

ncbi_isolation_source: soil

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar darmstadiensis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Thailand

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Leptolyngbyaceae cyanobacterium SM2_5_2

ncbi_submitter: University of Wisconsin, Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Leptolyngbyaceae cyanobacterium SM2_5_2


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field NE area of North Tower vent

ncbi_isolation_source: biosyringe of microbial iron mat on a black smoker

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: University of Bergen


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Veillonella sp.


ncbi_assembly_name: IMG-taxon 2602042068 annotated assembly

ncbi_organism_name: Curtobacterium sp. 9128

ncbi_submitter: DOE - Joint Genome Institute


ncbi_organism_name: Staphylococcus aureus O46

ncbi_submitter: INRA


ncbi_country: Brazil: Paraiba

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LAPOA-Federal University of Paraiba (UFPB)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Heilongjiang Province; Anda City

ncbi_organism_name: Nocardioides limicola

ncbi_submitter: Jiangsu University


ncbi_country: Japan

ncbi_isolation_source: nephrostomy urine

ncbi_submitter: Toho university


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_assembly_name: Salmonella enterica CVM N37907-SQ v1.0

ncbi_country: USA: CO

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_strain_identifiers: NBRC 3425

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus rhamnosus;x__Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425


ncbi_organism_name: Bartonella sp. CB74

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Terrisporobacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Achromobacter sp. EB05

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Borreliella kurtenbachii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Neisseria cinerea

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: University of Florida


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_assembly_name: Rumen uncultured genome RUG14920

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Actinomyces massiliensis


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Abditibacterium sp.

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Nevada, Reno


ncbi_country: Germany

ncbi_isolation_source: Nodule tissue

ncbi_organism_name: Rhizobium sp. TH2

ncbi_submitter: Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), PB, EP


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Thermoanaerobaculum sp.

ncbi_submitter: RIKEN-BRC


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Portugal: Lisbon area

ncbi_isolation_source: Pharynx

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Flavobacterium sp. Leaf82

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Mycoplasmoides gallisepticum

ncbi_submitter: University of Bern


ncbi_organism_name: Gallibacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_submitter: University of Colorado


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_submitter: SRCAMB


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Tech


ncbi_country: China:Nei Monggol Autonomous Region

ncbi_isolation_source: plant

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Graduate School of Chinese Academy of Agricultural Sciences


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: India: Kottayam; Kerala

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Mahatma Gandhi University


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Canada: Lacombe

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: AAFC


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Cyanobacteria bacterium OH_HFB_136

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium OH_HFB_136


ncbi_isolation_source: fecal swab

ncbi_submitter: City University of Hong Kong


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_submitter: Massey University


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F62007

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_country: Spain

ncbi_isolation_source: pork industry

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: ISCIII


ncbi_country: China: Jiangxi; Dexing

ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Acutalibacter muris


ncbi_organism_name: Enterococcus sp. C36

ncbi_submitter: Northwest A & F University


ncbi_country: USA: Morgantown

ncbi_organism_name: Serratia marcescens

ncbi_submitter: West Virginia University


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site A

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Flavobacterium ardleyense

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Seoul National University


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Reichenbachiella sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: New Zealand: Mt Albert

ncbi_organism_name: Pseudomonas savastanoi pv. glycinea

ncbi_strain_identifiers: ICMP 5378

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. glycinea


ncbi_organism_name: Parabacteroides sp. PH5-41

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Emeryville

ncbi_isolation_source: NRRL B1670-derived strain with spontaneous large deletions

ncbi_organism_name: Streptomyces albireticuli

ncbi_strain_identifiers: NRRL B1670 type B

ncbi_submitter: Joint Bioenergy Institute


ncbi_country: China: Shenzhen; Guangdong

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium liaoningense

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: TX

ncbi_isolation_source: Young Chickens

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N60048F

ncbi_submitter: FDA


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: EMG


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhizobium brockwellii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Weissella cibaria


ncbi_assembly_name: IMG-taxon 2597490368 annotated assembly

ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: saliva

ncbi_organism_name: TM7 phylum sp. oral taxon 352

ncbi_submitter: Oak Ridge National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__TM7 phylum sp. oral taxon 352


ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: clinical

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 58-6482


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Slovenia

ncbi_isolation_source: Treated wastewater (WWTP)

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Laboratory of Health, Environment and Food


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow spleen

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: China: Qinghai-Tibet Plateau

ncbi_organism_name: Streptomyces pactum

ncbi_submitter: Northwest A&F Unversity


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Halobacteriovoraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-194

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Dechloromonas sp.

ncbi_strain_identifiers: new MAG-194

ncbi_submitter: Micoorganism


ncbi_country: Germany: Hesse; Darmstadt

ncbi_submitter: Julius Kuehn-Institut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar tenebrionis


ncbi_country: Netherlands: near Groningen

ncbi_isolation_source: freshwater ditch

ncbi_organism_name: Phaeovulum veldkampii DSM 11550

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3889-1

ncbi_submitter: Broad Institute


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Danny from private home

ncbi_organism_name: Pseudogracilibacillus sp.

ncbi_submitter: AnimalBiome


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Lubbock; TX

ncbi_isolation_source: indwelling urinary catheter

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: National Center for Biotechnology Information


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_organism_name: Stellaceae bacterium


ncbi_organism_name: Melissospora conviva

ncbi_submitter: University of Liege


ncbi_country: Pacific Ocean: Station ALOHA

ncbi_isolation_source: Trichodesmium-associated heterocystous diazotroph (hetDA) enrichment; trichodesmium colony originally collected aboard the R/V Kilo Moana (KM10-13) near Station ALOHA

ncbi_organism_name: Hoeflea sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Caecum


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: decomposition metagenome

ncbi_organism_name: Candidatus Ochrobactrum gambitense

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Stickney; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured Gaiellales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Chthoniobacter sp.


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ellagibacter isourolithinifaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Flavobacterium procerum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Capnocytophaga canis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Mexico: Chihuahua

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Methylobacterium radiotolerans

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: Canada: Manitoba

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: alpha proteobacterium SCGC AAA288-N07

ncbi_strain_identifiers: SCGC AAA288-N07

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__unclassified Pelagibacteraceae;s__alpha proteobacterium SCGC AAA288-N07


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Mangrovimonas sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Staphylococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alcanivorax sp.


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient sediment

ncbi_organism_name: Ruegeria sp. HKCCA4633

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Ji Lin; Changchun; Agricultural Science Experimental Station of Jilin Agricultural University

ncbi_isolation_source: tomato rhizosphere soil

ncbi_organism_name: Pantoea jilinensis

ncbi_submitter: Jilin Agricultural University


ncbi_organism_name: [Actinobacillus] rossii

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;x__Pasteurellaceae incertae sedis;x__[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex;s__[Actinobacillus] rossii


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_isolation_source: chicken carcass

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Italy: Correzzola (PD)

ncbi_isolation_source: intestine content

ncbi_organism_name: Clostridium botulinum C/D

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Halomonas sp. KM-1

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: France: Nimes

ncbi_isolation_source: sputum from cystic fibrosis patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Montpellier Service de Microbiologie et Hygiene Hospitaliere CHU Nimes


ncbi_country: Argentina: Buenos Aires; a tawn park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. AR13-1

ncbi_submitter: University of Bialystok

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. AR13-1


ncbi_organism_name: uncultured Holdemania sp.


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: Aarhus University


ncbi_country: Israel: Kfar Sava

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Zurich


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Azospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Candidatus Calescibacterium sp.

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Calescibacteriota;g__Candidatus Calescibacterium;x__unclassified Candidatus Calescibacterium;s__Candidatus Calescibacterium sp.


ncbi_organism_name: uncultured Vampirovibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Sphingobacterium sp. UBA5789

ncbi_submitter: University of Queensland


ncbi_country: China: Changsha; Hunan

ncbi_isolation_source: sputum

ncbi_submitter: BGI


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Leptolyngbya sp.

ncbi_submitter: Stockholm University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Croceibacterium sp.


ncbi_organism_name: Bifidobacterium minimum DSM 20102

ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Polycyclovorans sp.


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Seattle

ncbi_isolation_source: Airway secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SCH


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Brevundimonas bullata

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: pit mud

ncbi_organism_name: Clostridium sp. JN-1

ncbi_submitter: Biogas science Research Institute of Agriculture Ministry


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU074

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudescherichia sp.


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: Thiolinea sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_isolation_source: water

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Nanchang

ncbi_isolation_source: pork meat

ncbi_submitter: Jiangxi Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: EMBM Laboratory, Faculty of Sciences, Mohammed V University in Rabat


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20121689


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Australia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 294

ncbi_submitter: Ghent University


ncbi_organism_name: Salmonella sp. NW1143

ncbi_submitter: Sichuan University


ncbi_country: Netherlands

ncbi_isolation_source: Dept of Medical Microbiology; University Medical Center Groningen

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Antarctica: Prydz Bay

ncbi_isolation_source: sea ice algal assemblage

ncbi_organism_name: Polaribacter sp. IC066

ncbi_submitter: University of Tasmania


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Treponema socranskii

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Meconium

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Escherichia coli

ncbi_submitter: Univeristy of South Australia


ncbi_organism_name: Streptomyces maoxianensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Brazil: Fortaleza

ncbi_submitter: LNCC


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Flavobacterium sp. W21_SRS_FM7

ncbi_submitter: United States Naval Academy


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: China

ncbi_submitter: College of Life Science


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_isolation_source: urine

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_submitter: Yunnan Institute of Microbiology


ncbi_country: USA: NYC

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii AB_TG2026

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Desulfobacca sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Sporosarcina saromensis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Salmonella sp. C3149

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Shenzhen

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: BGI-Shenzhen


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Lebanon

ncbi_isolation_source: abscess

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Odoribacter laneus


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: COPD M4a

ncbi_submitter: Chengdu University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: midwestern

ncbi_isolation_source: Manila ropes placed above water tanks and feed bunks used as sampling devices

ncbi_submitter: University of Nebraska-Lincoln

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: USA: Michigan

ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Case Western Reserve University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_country: Sri Lanka:Kegalle

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Rajarata University of Sri lanka


ncbi_country: Spain

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Italy: Milan

ncbi_isolation_source: Forehead healthy skin

ncbi_organism_name: Cutibacterium namnetense

ncbi_submitter: IRCCS Ospedale Galeazzi - Sant'Ambrogio


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SurvCARE


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: Norway: Bergen

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_organism_name: uncultured Klebsiella sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Auburn University


ncbi_country: Estonia

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Pseudomonas sp. RA_5y_Pfl1_P24

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI