ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Viet Nam

ncbi_genome_representation: full

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium malmoense

ncbi_submitter: JCVI


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


gtdb_representative: t

ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_country: Antarctica: South Shetland Islands

ncbi_organism_name: Caballeronia sordidicola

ncbi_submitter: Pukyong National University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Suzhou

ncbi_isolation_source: BALF

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Suzhou Hospital of Traditional Chinese Medicine


ncbi_organism_name: Escherichia coli KTE188

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: rumen

ncbi_organism_name: Gammaproteobacteria bacterium UBA2810

ncbi_submitter: University of Queensland


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Institute of Life Sciences


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus urinae

ncbi_submitter: Loyola University Chicago


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pantoea sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: China: NanChang

ncbi_isolation_source: Whole chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_country: USA: Virginia

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Northeastern University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Eggerthella sinensis

ncbi_submitter: University of Chicago


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV029

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. JS051105201500009SM

ncbi_submitter: Nanjing agticultural university


ncbi_isolation_source: Faeces

ncbi_organism_name: Mycoplasmoidaceae bacterium


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Pseudomonas trivialis

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: STB-I

ncbi_organism_name: Mycobacterium canettii CIPT 140070007

ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium canetti;x__Mycobacterium canettii CIPT 140070007


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: SciBear LLC


ncbi_assembly_level: Complete Genome

ncbi_country: China: Yangzhou

ncbi_isolation_source: Pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Staphylococcus aureus subsp. aureus COL

ncbi_strain_identifiers: COL

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus COL


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Dakarella massiliensis

ncbi_submitter: EMG


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: freshwater lake

ncbi_organism_name: beta proteobacterium AAP65

ncbi_submitter: Institute of Microbiology, ASCR


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Agrobacterium fabrum str. C58

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Agrobacterium;x__Agrobacterium tumefaciens complex;s__Agrobacterium fabrum;x__Agrobacterium fabrum str. C58


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Marine fish farm

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NWAFU


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Micromonospora haikouensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Shigella sonnei

ncbi_submitter: UNIVERSITY OF COLORADO DENVER, SCHOOL OF MEDICINE


ncbi_country: Serbia

ncbi_isolation_source: Covid-19 patient on mechanical ventilation

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_organism_name: Malikia spinosa

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Floor/Wall Under 3-Basin Sink (NFCS)

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: UVM


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Brazil: Abrolhos bank reef

ncbi_isolation_source: water

ncbi_organism_name: Alteromonas abrolhosensis

ncbi_submitter: UFRJ


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_isolation_source: gut content

ncbi_organism_name: Escherichia coli

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: EMG


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Rhodospirillaceae bacterium UBA4420

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep seawater

ncbi_organism_name: Hyphomonas atlantica

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)

ncbi_type_material_designation: assembly from type material


ncbi_country: Canada:Athabasca Oil Sands

ncbi_isolation_source: waste water

ncbi_organism_name: Synergistaceae bacterium UBA2252


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 543463 42-20


ncbi_country: China

ncbi_isolation_source: lichen

ncbi_organism_name: Subtercola lobariae

ncbi_submitter: College of Life Science


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Actinophytocola sp.

ncbi_submitter: Princeton University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Toho University


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Georgia


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Beckwithbacteria bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Beckwithiibacteriota;x__unclassified Candidatus Beckwithbacteria;s__Candidatus Beckwithbacteria bacterium


ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Mississippi State University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Ruminococcus bromii


ncbi_organism_name: uncultured Leptolinea sp.


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pantoea piersonii


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: Pakistan

ncbi_submitter: Uppsala University


ncbi_country: USA: Colorado Springs; CO

ncbi_organism_name: Curtobacterium herbarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Slovenia: Golnik

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: India: Uttar Pradesh; Kanpur Nagar; Kanpur

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Thiohalocapsa sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: South China Agricultural University


ncbi_country: Argentina: La Rioja

ncbi_organism_name: Xylella fastidiosa subsp. pauca

ncbi_submitter: Instituto de Patologia Vegetal CIAP-INTA


ncbi_country: France: APHM

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Propionibacteriaceae bacterium UBA5174

ncbi_submitter: University of Queensland


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0304816.12

ncbi_submitter: IGS


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 monocultured in 8 g/ml imipenem treated Synthetic Cystic Fibrosis Media for 24 days

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF36-4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: uncultured Synergistales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_assembly_name: freshwater MAG --- Umea1p4_bin-538

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_isolation_source: Catheter

ncbi_submitter: SC


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_organism_name: Zymomonas mobilis subsp. mobilis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Peru

ncbi_isolation_source: intestine

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_country: China: Guangzhou

ncbi_isolation_source: fried rice or noodles samples

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MI

ncbi_organism_name: Clostridioides difficile CD149

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Streptomyces venezuelae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain

ncbi_isolation_source: Shower

ncbi_organism_name: Legionella maioricensis

ncbi_refseq_category: reference genome

ncbi_submitter: University of Balearic Islands


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_organism_name: Marinobacterium mangrovicola

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: WA

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China: Xinjiang

ncbi_isolation_source: springwater

ncbi_organism_name: Aquiflexum gelatinilyticum

ncbi_submitter: nstitute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CAU


ncbi_country: China: Heihe; Heilongjiang

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium liaoningense

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany: Tubingen

ncbi_organism_name: Streptomyces viridochromogenes Tue57

ncbi_submitter: University of Freiburg


ncbi_isolation_source: feces

ncbi_organism_name: Thomasclavelia cocleata


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.


ncbi_isolation_source: Soil

ncbi_organism_name: Actinoplanes couchii

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Listeria cossartiae subsp. cayugensis

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cayugensis


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_country: Germany

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University Hospital Muenster


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Oregon State University


ncbi_organism_name: Paeniglutamicibacter kerguelensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae MGH 32

ncbi_strain_identifiers: MGH 32

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MGH 32


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: joint

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_organism_name: Shigella sonnei

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolate: Psychrobacter immobilis Liston1000

ncbi_isolation_source: gills of lemon sole

ncbi_organism_name: Psychrobacter immobilis

ncbi_strain_identifiers: Psychrobacter immobilis Liston1000

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Nigeria

ncbi_organism_name: Brucella melitensis Uk24/06


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Ethiopia: Benishangul; Asosa; Bambasi

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Zhejiang

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: PA

ncbi_isolation_source: intestine mouse

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Japan: Namiki Park; Namiki; Tsukuba; Ibaraki

ncbi_isolate: cyanobacterium endosymbiont of Rhopalodia gibberula isolate RgSB Namiki Park

ncbi_submitter: Center for Computational Sciences, University of Tsukuba

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__cyanobacterium endosymbiont of Rhopalodia gibberula


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Gyeongsang national university


ncbi_organism_name: Rhodococcus sp. NPDC056743

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NPDC056743


ncbi_organism_name: Pseudanabaena sp.


ncbi_organism_name: Allisonella histaminiformans

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Norway: Kongsfjorden; Svalbard

ncbi_isolate: SVA bin3

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: SVA bin3

ncbi_submitter: Monash University


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Other fluids

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_submitter: Sichuan University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_assembly_name: freshwater MAG --- Umea3_bin-2317

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Pacific Ocean: South China Sea

ncbi_isolation_source: deap sea cold seep sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_country: Germany: Freiburg

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: marine

ncbi_organism_name: Cellvibrionales bacterium


ncbi_submitter: University of Manchester


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia sp.


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-1055

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0534


ncbi_country: USA: NY

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: China: Gansu

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_country: France: Normandy

ncbi_isolation_source: bronchial aspiration

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Leucobacter sp. OH2974_COT-288

ncbi_submitter: UC Davis


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2623620481 annotated assembly

ncbi_organism_name: Eubacterium ruminantium

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Sphingobacterium siyangense

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Calgary; Alberta

ncbi_isolation_source: colon biopsy (terminal ileum)

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: UCSF


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Qingdao; coastal region

ncbi_isolation_source: sea water

ncbi_organism_name: Celeribacter halophilus

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Methylobacteriaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INTA


ncbi_isolation_source: clinical sample

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: South Korea

ncbi_isolation_source: tidal flat

ncbi_organism_name: Clostridium aestuarii

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: South Korea: Yellow sea

ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Tropicimonas sp. IMCC34011

ncbi_submitter: Inha University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Schaalia odontolytica


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Arthrobacter sp.

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coprococcus sp. AM100_B19A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Butyricimonas sp.


ncbi_assembly_name: IMG-taxon 2693429828 annotated assembly

ncbi_organism_name: Bacillus sp. OV322

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. OV322


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01323

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01323


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Korea Research Institue of Bioscience a


ncbi_country: Egypt: Tanta

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Yangzhou

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: YangZhou university


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Ventosimonas sp.


ncbi_organism_name: Mycoplasmoides pirum ATCC 25960

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;o__Mycoplasmoidales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides pirum;x__Mycoplasmoides pirum ATCC 25960


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Hominicoprocola fusiformis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: RMIT University


ncbi_country: China: Jiangsu

ncbi_isolation_source: blood

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: France: Auvergne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: China

ncbi_isolation_source: bile

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_assembly_name: IMG-taxon 2622736531 annotated assembly

ncbi_organism_name: Micromonospora halophytica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Marinomonas phaeophyticola

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Maribacter litopenaei

ncbi_submitter: Seoul National University


ncbi_submitter: ANSES Ploufragan


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cpo148

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Canada: British columbia

ncbi_organism_name: Francisella tularensis subsp. tularensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EBI


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Polynucleobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Haemophilus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. C3338

ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: uncultured Sphingobium sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: LHUB-ULB


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinshan District Center for Disease Control and Prevention


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_submitter: Maimonides Biomedical Research Institute of Cordoba


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Carnegie Institution for Science


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: chicken caecal content


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Zhejiang University


ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_submitter: Curtin University


ncbi_submitter: Mahidol University


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Streptomyces sp. NPDC007044

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: EMG


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Moskow Lomosonov State University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Czech Republic

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Biology Centre CAS


ncbi_country: USA: FL

ncbi_isolation_source: lung (Equus ferus caballus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Oman

ncbi_isolation_source: blood

ncbi_submitter: Central Public Health Laboratories

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_assembly_level: Chromosome

ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hefei

ncbi_isolation_source: sputum

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: the First Affiliated Hospital of Anhui Medical University


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: Pork

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Derby

ncbi_submitter: ANSES


ncbi_organism_name: Pseudomonas rhodesiae


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Universidade Federal Fluminense


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 16d patty soil

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Peking university


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: lake water

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_submitter: NIH/NHGRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: EMG


ncbi_organism_name: Chthoniobacteraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolate: Cell culture

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: BW25113;Cell culture

ncbi_submitter: Pennsylvania State University


ncbi_country: Portugal: Porto

ncbi_isolation_source: Low Respiratory Tract Infection

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Norway

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_country: USA: Virginia

ncbi_isolation_source: white-tailed deer feces

ncbi_organism_name: Pseudomonas sp. 20P_3.2_Bac4

ncbi_submitter: Washington University in St. Louis


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled soil sample collected from floor of pig farm

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: uncultured Polaribacter sp.


ncbi_organism_name: Fischerella thermalis ESF170215


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: China: Tiger Hill Pond

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. MWH-HuK1

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: Faeces

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_assembly_name: Salmonella enterica CVM N51285 v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ruminococcaceae bacterium AM49-21

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudomonas meliae

ncbi_strain_identifiers: CFBP 3225

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas meliae


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Wenzhou Medical University


ncbi_organism_name: Phyllobacterium sp.

ncbi_submitter: EPFL


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_organism_name: Thermodesulfobacteriota bacterium


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acetobacter indonesiensis

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pretoria


ncbi_organism_name: Candidatus Hydrogenedentales bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;x__unclassified Candidatus Hydrogenedentales;s__Candidatus Hydrogenedentales bacterium


ncbi_country: South Africa: Pretoria

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_organism_name: Mycetocola sp.

ncbi_submitter: Monash University


ncbi_organism_name: Brevundimonas sp.


ncbi_organism_name: Streptomyces filamentosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Sichuan University


ncbi_country: USA: Boston

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: GA

ncbi_isolation_source: peanut butter

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yangzhou

ncbi_isolation_source: chicken meat

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_genome_representation: partial

ncbi_organism_name: Pseudomonas palleroniana

ncbi_submitter: Kunming University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Gateway Technical College


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Research and Innovation Agency


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Qingdao agriculture university


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: Lembah Pantai River

ncbi_organism_name: Staphylococcus sp. S59

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Streptococcus sp. UBA632


ncbi_organism_name: Pinirhizobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_organism_name: Mycobacterium saskatchewanense

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-b_bin-380

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: Slovenia: Ljubljana

ncbi_isolation_source: Oropharinx

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_submitter: Center for Microbial Communities


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-676-L21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_organism_name: Streptomyces griseoviridis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Case Western Reserve University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Haifa


ncbi_organism_name: Allisonella histaminiformans


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_submitter: The French Research Institute for Exploitation of the Sea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_country: France: Munster

ncbi_isolation_source: tick

ncbi_organism_name: Borreliella garinii IPT108

ncbi_submitter: Animal Epidemiology Unit - INRA - Saint Genès Champanelle; CNR Borrelia - Pasteur Institute - Paris


ncbi_organism_name: Streptococcus parasuis


ncbi_isolation_source: lung

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ares Genetics


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Fibrobacterota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__environmental samples;s__uncultured Fibrobacterota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Insytitute of microbiology and epidemiology


ncbi_country: Italy

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Research Institute


ncbi_country: China: Yan an

ncbi_isolation_source: fermentation bed material

ncbi_organism_name: Pusillimonas sp. MFBS29

ncbi_submitter: Yan'an university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: biofilm

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium UBA2282


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_country: USA: NH; DHMC

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Dartmouth College


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_submitter: Huzhou cdc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: mBioClim


ncbi_isolation_source: gut of vertebrate mammal

ncbi_organism_name: Lachnospiraceae bacterium UBA645


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW458-11-26-14-LB3

ncbi_submitter: Arkin Lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Rakuno Gakuen University; Mansoura University; Zewail City of Science and Technology


ncbi_country: Germany: Starnberger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Sphingobium limneticum

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Capnocytophaga sp.


ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Allofournierella sp.

ncbi_submitter: Biomin Research Center


ncbi_country: Spain: Huelva

ncbi_isolation_source: Mango tissue

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Malaga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_assembly_name: freshwater MAG --- B12_bin-0429

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Feedlot Water bowl

ncbi_organism_name: Psychrobacter maritimus

ncbi_submitter: Western College of Veterinary Medicine


ncbi_organism_name: Massilia sp.


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_isolate: labscale reactor_MAG11

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_strain_identifiers: labscale reactor_MAG11

ncbi_submitter: European Union Horizon 2020 research and innovation programme


ncbi_isolate: Patient #48

ncbi_isolation_source: Skin

ncbi_organism_name: Cutibacterium acnes

ncbi_strain_identifiers: Patient #48

ncbi_submitter: sapienza university


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: China: Beijing

ncbi_submitter: National institutes of Food and Drug Control


ncbi_country: Portugal

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: lake water

ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Pacific Ocean: South China Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Thalassospira marina

ncbi_submitter: Third Institute of Oceanography,State Oceanic Administration


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospira sp.


ncbi_country: China: Shanghai

ncbi_isolation_source: pork

ncbi_organism_name: Staphylococcus argenteus

ncbi_strain_identifiers: SJTU F21285

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Turkey

ncbi_isolation_source: throat swab

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Pseudothermotoga sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Germany

ncbi_isolation_source: cloacal swab

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: pork salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Bioorganic Chemistry, Graduate School of Fisheries Sciences, Hokkaido University


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_country: China: Lincang

ncbi_isolation_source: Green tea

ncbi_organism_name: Pantoea sp. Z09

ncbi_submitter: Huazhong University of Science and Technology


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: The University of Adelaide


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: Germany: Porta Westfalica; Grosser Weserbogen

ncbi_organism_name: Wolbachia endosymbiont of Nomada ferruginata

ncbi_strain_identifiers: wNfe

ncbi_submitter: University of Liverpool


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Uppsala University


ncbi_country: USA: Wisconsin

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. b94

ncbi_submitter: Cornell University


ncbi_country: Mexico: Sonora

ncbi_isolation_source: hypersaline soil

ncbi_organism_name: Halomonas elongata

ncbi_submitter: Instituto tecnologico de Sonroa


ncbi_submitter: Medical Mycology Research Center


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: MIT


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UFMG


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: Floccifex porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Thailand

ncbi_isolation_source: root

ncbi_organism_name: Achromobacter aloeverae

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Jeotgalibacillus marinus

ncbi_submitter: Shandong University of Technology


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_isolation_source: seafood

ncbi_organism_name: Vibrio parahaemolyticus S148

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S148


ncbi_submitter: China Agricultural University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Spirosomataceae bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: not known


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1392

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of La Rioja


ncbi_assembly_name: Rumen uncultured genome RUG10391

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Brazil

ncbi_isolation_source: milk

ncbi_submitter: Universidade Federal de Vicosa


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Yersinia massiliensis CCUG 53443

ncbi_submitter: ebi


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Australia: Brisbane

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ileibacterium valens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: China: Beijing

ncbi_organism_name: Pectobacterium odoriferum

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_organism_name: Kosakonia cowanii


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Beijing University of Chemical Technology


ncbi_country: USA: MS

ncbi_isolation_source: Liver

ncbi_organism_name: Staphylococcus aureus DAR3596

ncbi_submitter: Broad Institute


ncbi_country: USA: MO

ncbi_isolation_source: yolk

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Polynucleobacter sphagniphilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Shigella boydii


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EBI


ncbi_organism_name: Acidovorax defluvii


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: drainage; left groin

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_organism_name: Campylobacter molothri

ncbi_submitter: USDA, ARS, WRRC


ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Chryseobacterium limigenitum


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Bacteroides caecimuris


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_country: Poland: Poznan

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Prochlorotrichaceae cyanobacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Yersinia pestis CMCC348002

ncbi_submitter: Beijing Genomics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Delaware Public Health Lab


ncbi_country: China:Zhejiang Province

ncbi_isolation_source: sputum

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Mycolicibacterium agri

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University of Queensland


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Odoribacter laneus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Kapaibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;x__unclassified Candidatus Kapaibacteriota;s__Candidatus Kapaibacteriota bacterium


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Enterobacter cloacae complex sp. 400B2

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 400B2


ncbi_organism_name: Variovorax sp. DAIF25

ncbi_submitter: Georg August University of Goettingen


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Neptuniibacter sp. QD48_55

ncbi_submitter: Shantou University


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-396

ncbi_isolation_source: bioreactor sludge

ncbi_strain_identifiers: new MAG-396

ncbi_submitter: Micoorganism


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Beijerinckia sp.


ncbi_organism_name: Streptomyces sp. NPDC057336

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas sp. AK181

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: PVC group bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG11721

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: Afghanistan

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: China: Liaocheng

ncbi_organism_name: Escherichia coli

ncbi_submitter: University College London (UCL)


ncbi_assembly_name: Rumen uncultured genome RUG12577

ncbi_organism_name: uncultured Bacteroidia bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Polaromonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: Colombia

ncbi_isolation_source: Surgical wound

ncbi_organism_name: Staphylococcus aureus DAR5807

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M55890


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bacillus subtilis J24

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;x__Bacillus subtilis J24


ncbi_submitter: University of Wyoming


ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Sweden

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_isolate: YS river water

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: France

ncbi_isolation_source: Hydroponic greenhouse

ncbi_organism_name: Agrobacterium leguminum

ncbi_submitter: KU Leuven


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: Laos

ncbi_isolation_source: chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: alpha proteobacterium SCGC AAA027-C06

ncbi_strain_identifiers: SCGC AAA027-C06

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__unclassified Alphaproteobacteria;s__alpha proteobacterium SCGC AAA027-C06


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolate: metabat2_coassembly_bwa.608 MAG

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.608 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Pelovirga sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Germany: Hospital in Bonn

ncbi_isolation_source: Blood

ncbi_organism_name: Mycoplasma capricolum subsp. capricolum

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capricolum


ncbi_country: Colombia: Norte de Santander

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio furnissii

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_organism_name: Bifidobacterium adolescentis ATCC 15703

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Archangium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter salomonis

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: Canada: Toronto

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Lentimicrobium sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Mexico

ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: INIFAP 009-16

ncbi_submitter: UNAM


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Tunisia: Gafsa

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_country: China: Sanya

ncbi_isolation_source: soil

ncbi_organism_name: Herbidospora galbida

ncbi_submitter: School of life science


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: Germany

ncbi_isolation_source: Surface patient room

ncbi_submitter: University Hospital Muenster


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Actinobacillus sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Singapore

ncbi_isolation_source: Coastal Water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National University of Singapore


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Alphaproteobacteria bacterium UBA6178

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: Spain

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Barcelona


ncbi_country: United Kingdom: Scotland; Edinburgh

ncbi_submitter: The Roslin Institute


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Fargo

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Poland: Krakow

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: human stool

ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: DOE JGI


ncbi_assembly_name: Rumen uncultured genome RUG11792

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Rubricoccaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Candidatus Atribacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Antwerp


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Klebsiella variicola


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Holophagales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: The University of Tokyo


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases