ncbi_country: Italy: Piemonte

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_strain_identifiers: CRAFRU 12.29

ncbi_submitter: University of Udine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_country: China: Hubei

ncbi_isolation_source: Rice wine Koji

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_assembly_level: Scaffold

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Switzerland

ncbi_organism_name: Raoultella planticola

ncbi_submitter: University of Basel


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_submitter: North South university


gtdb_representative: t

ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:524

ncbi_submitter: DTU


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_organism_name: Yersinia enterocolitica NFO

ncbi_strain_identifiers: NFO

ncbi_submitter: Max von Pettenkofer-Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;s__Yersinia enterocolitica;x__Yersinia enterocolitica (type O:5);x__Yersinia enterocolitica NFO


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: Faculty of Applied Biological Sciences, Gifu University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0015

ncbi_submitter: Broad Institute


ncbi_country: Viet Nam: Cao Phong; Hoa Binh

ncbi_isolation_source: orange plant root

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: ENDOBICA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Child Health and Mortality Prevention Surveillance (CHAMPS) network


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_level: Chromosome

ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JSS Academy of Higher Education & Research


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_country: Peru: Lima

ncbi_isolation_source: wildlife

ncbi_submitter: Universidad Andres Bello


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: Russian Research Anti-plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: Urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Blautia hydrogenotrophica

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Rumen uncultured genome RUG10231

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: Urine

ncbi_strain_identifiers: STp 716;NILS43:A;STw 540;Oneg:H30;Urine

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Beside Boulder

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Duisburg-Essen


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_submitter: EMG


ncbi_isolation_source: bile

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Ningbo First Hospital


ncbi_assembly_name: Burkholderia  cenocepacia BCC0051

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Switzerland: Bern

ncbi_isolation_source: autopsy

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Ramon y Cajal


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1184

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1184


ncbi_organism_name: Glutamicibacter sp. PS

ncbi_strain_identifiers: PS

ncbi_submitter: The University of Burdwan


ncbi_isolation_source: Onion

ncbi_organism_name: Pseudomonas alliivorans

ncbi_submitter: Texas A & M University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: University of Alberta


ncbi_country: Mongolia: Dzavhan Aymag

ncbi_isolation_source: spleen

ncbi_organism_name: Yersinia pestis

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Xinjiang

ncbi_isolation_source: desert

ncbi_organism_name: Pontibacter diazotrophicus

ncbi_refseq_category: reference genome

ncbi_submitter: Shandong University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Neisseria sp. P0018.S003

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong (CityU)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudolabrys sp.


ncbi_organism_name: SAR92 clade bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Sphingobium sp.

ncbi_submitter: EMG


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Palleronia sp. KMU-117

ncbi_submitter: Keimyung University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Leptospira borgpetersenii serovar Tarassovi

ncbi_strain_identifiers: USDA TAL-010

ncbi_submitter: USDA


ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium UBA2847

ncbi_submitter: University of Queensland


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Anaerolinea sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: environment

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium CG_4_9_14_3_um_filter_39_23


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfurivibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Greece

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alphaproteobacteria bacterium UBA3502


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Colombia

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of Antioquia


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Anaerostipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 44362_9

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Spain: Granada

ncbi_isolation_source: Diesel-contaminated pilot plant

ncbi_organism_name: Agrobacterium sp. MS2

ncbi_submitter: Institute of Water Research


ncbi_isolation_source: metagenome

ncbi_organism_name: Anaeromassilibacillus sp. An250

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Laboratory for Diagnosis and Treatment of Infectious Diseases


ncbi_isolation_source: contaminated hospital material

ncbi_organism_name: Microbacterium oxydans

ncbi_submitter: Universite Alger1


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: USA: Washington DC

ncbi_isolation_source: Ground beef

ncbi_organism_name: Bacillus halotolerans

ncbi_strain_identifiers: Bacillus

ncbi_submitter: Howard university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_submitter: University of Exeter


ncbi_isolation_source: freshwater

ncbi_organism_name: Shewanella sp.

ncbi_submitter: University of Queensland


ncbi_country: Japan:Tochigi; Utsunomiya

ncbi_isolation_source: water

ncbi_organism_name: Roseomonas sp. TAS13

ncbi_submitter: Utsunomiya University


ncbi_country: Chile: Lirima thermal springs

ncbi_isolation_source: Water

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


gtdb_type_species_of_genus: t

ncbi_organism_name: Mycobacterium tuberculosis H37Rv

ncbi_submitter: The Broad Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Salmonella sp. NW535

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Iran

ncbi_isolation_source: environment

ncbi_organism_name: Bacillus cereus

ncbi_submitter: National Institute of Genetic Engineering and Biotechnology (NIGEB)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: China: Sichuan; Chengdu

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: Germany

ncbi_isolation_source: brewery environment

ncbi_organism_name: Secundilactobacillus paracollinoides

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Vibrio hyugaensis

ncbi_submitter: Academia Sinica


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4295

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Seoul National University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pittsburgh


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Soft tissues

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: university of cambridge


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Denmark

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_strain_identifiers: ATCC 8041

ncbi_submitter: Carlsberg Research Laboratory


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0850

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Litorivivens sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oldenburg


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Chlamydia trachomatis L2/434/Bu

ncbi_submitter: Wellcome Trust Sanger Institute


ncbi_assembly_name: IMG-taxon 2711768647 annotated assembly

ncbi_organism_name: Burkholderia sp. YR290

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_organism_name: Thermus thermophilus

ncbi_submitter: International Center for Biotechnoogy, Osaka University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: Madagascar: Antananarivo

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Institut Pasteur de Madagascar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human skin

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_submitter: University of Northampton


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Beijerinckiaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: Alaska

ncbi_isolation_source: field isolate

ncbi_organism_name: Brucella abortus 82-2330

ncbi_submitter: Broad Institute


ncbi_isolation_source: Unknown

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Bacteroidetes bacterium MED-G20

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium MED-G20


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0932


ncbi_country: China: Malan

ncbi_organism_name: Janibacter melonis

ncbi_submitter: BGI-Qingdao


ncbi_country: Israel

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_country: Japan: Lake Kasumigaura

ncbi_isolation_source: freshwater

ncbi_organism_name: Microcystis aeruginosa NIES-298

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Francisella cf. novicida Fx1

ncbi_submitter: LANL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. novicida;x__Francisella cf. novicida Fx1


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus 1101-2 2010

ncbi_submitter: IGS


ncbi_organism_name: Tunturiibacter empetritectus

ncbi_submitter: Rutgers University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Desulfonatronovibrionaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Salmonella sp. CQ23WZ0132SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Gifu Prefectural Research Institute for Health and Environmental Sciences


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Teagasc


ncbi_organism_name: Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: wastewater metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Crocinitomix sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Megamonas funiformis


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-210-07_S4_C2

ncbi_submitter: IGS


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Fujian

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Ethiopia: Amhara; East Gojjam

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: lake water

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Lasioglossum malachurum


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Microbiology, Tokyo Metropolitan Institute of Public Health


ncbi_organism_name: uncultured Pelosinus sp.

ncbi_submitter: EMG


ncbi_country: Russia: Ulan-Ude

ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: Volgograd Research Institute for Plague Control


ncbi_organism_name: Campylobacter sp. CNRCH_2015_0338h

ncbi_submitter: IFREMER


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_organism_name: Polaromonas jejuensis NBRC 106434

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: India: Bidar Town; Bidar Taluk and District; Karnataka

ncbi_isolation_source: Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudomonas sp. B11D7D

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Jiangsu

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia: Brisbane

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: The University of Queensland


ncbi_country: China

ncbi_isolation_source: Hepatobiliary surgery

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Guangzhou Medical University


ncbi_country: Russia: North Caucasus region

ncbi_organism_name: Neorhizobium galegae

ncbi_submitter: ARRIAM


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas gulae

ncbi_submitter: UC Davis


ncbi_organism_name: Pseudomonas syringae pv. cerasicola

ncbi_submitter: JLU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. cerasicola


ncbi_submitter: Quadram Institutte


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: MA

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia albertii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: UPSUD


ncbi_organism_name: Emcibacteraceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Frankfurt am Main

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Paraburkholderia nemoris

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: USA

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine


ncbi_country: India

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Yinshan Lead-Zinc Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: IS 25

ncbi_isolate: IS 25

ncbi_isolation_source: unknown

ncbi_organism_name: Clostridioides difficile

ncbi_strain_identifiers: IS 25


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_assembly_name: Salmonella enterica CVM 43752 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: Spain

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus C1655

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: Italy

ncbi_isolation_source: greenhouse maintained

ncbi_strain_identifiers: VAC

ncbi_submitter: Università di Udine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrIII (X-disease group);s__Vaccinium witches'-broom phytoplasma;x__Vaccinium witches'-broom phytoplasma str. VAC


ncbi_organism_name: Kitasatospora sp. NPDC036755

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Erythrobacteraceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: intestinal content

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: ChinaCDC


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Australia: Darwin; Northern Territory

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Menzies School of Health Research


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Achromobacter dolens

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Reunion

ncbi_isolation_source: Rectal

ncbi_submitter: University Hospital of Besancon


ncbi_country: Australia: Queensland dairy property

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: University of Calgary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp. KCJK8751

ncbi_submitter: University of Florida


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Helicobacter sp.


ncbi_organism_name: Gluconobacter cerinus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Delft University of Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Shimia sp. MIT1388

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: CCCM 004

ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: CCCM 004

ncbi_submitter: The University of Queensland


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Department of Life Science & Medical Bioscience, School of Advanced Science and Engineering, Waseda University


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: uncultured Emergencia sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Teagasc


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: Rumen uncultured genome RUG14014

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseovarius sp.

ncbi_submitter: marine college, shandong university


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Switzerland: Vaud

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_assembly_name: Rumen uncultured genome RUG12291

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: Cornell University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Croatia: Rovinj

ncbi_isolation_source: sponge

ncbi_organism_name: Nocardiopsis sp. RV163

ncbi_submitter: University of Wuerzburg


ncbi_country: Tanzania: SINGIDA

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Sulfonitrofixus jiaomeiensis

ncbi_submitter: Third institute of oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_country: South Korea: Daejeon

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: KRIBB


ncbi_country: China:Hubei; Wuhan

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: AOP34_AQ2_surf _bin _10

ncbi_organism_name: Alkalibacterium gilvum

ncbi_strain_identifiers: AOP34_AQ2_surf _bin _10

ncbi_submitter: Genoscope


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0095

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: India

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Buttiauxella sp.


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: IBPM RAS


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Bacteriovoracales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: Mediastinal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: China

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Germany

ncbi_isolation_source: respiratory

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: wastewater

ncbi_submitter: University of Zurich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: uncultured Veillonella sp.


ncbi_isolate: Streptomyces sp. F1

ncbi_organism_name: Streptomyces sp. F-1

ncbi_strain_identifiers: Streptomyces sp. F1

ncbi_submitter: LABORATORIO NACIONAL DE CIENCIA E TECNOLOGIA DO BI


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M113S2

ncbi_submitter: Universite de Montreal


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human oral cavity

ncbi_organism_name: Arachnia rubra

ncbi_submitter: The Forsyth Institute


ncbi_country: Malaysia: Johor

ncbi_isolation_source: compost

ncbi_organism_name: Micromonospora sp. CP22

ncbi_submitter: FACULTY OF SCIENCE, UNIVERSITI TEKNOLOGI MALAYSIA


ncbi_country: Kenya

ncbi_isolation_source: urine

ncbi_submitter: MMUST biological


ncbi_organism_name: uncultured Coxiellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: USA: GA

ncbi_isolation_source: forest

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Cedecea sp. VD27

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Spain: Jerez

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7159

ncbi_submitter: University of Queensland


ncbi_country: Japan: Tokyo

ncbi_isolation_source: Surgical wound

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Toho University School of Medicine


ncbi_isolation_source: Skin


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2455


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: Proximal colon


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Loktanella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Australia: Victoria

ncbi_isolation_source: aerobically stored beef

ncbi_organism_name: Brochothrix thermosphacta

ncbi_submitter: CSIRO Agriculture and Food; Food Safety and Stability Group


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolate: AOP34_AQ2_surf _bin _33

ncbi_organism_name: Mycobacteriaceae bacterium

ncbi_strain_identifiers: AOP34_AQ2_surf _bin _33

ncbi_submitter: Genoscope


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: UCSI University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Guangzhou

ncbi_isolation_source: food

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Czech Republic: Pardubice region

ncbi_isolation_source: genital tract swabs

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: State Veterinary Institute Prague


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environmental surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Ocean University of China


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: Pseudomonas thivervalensis

ncbi_submitter: INRAE


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Streptomyces sp. NBC_01390

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Crystal Geyser near Green River; Utah


ncbi_country: Romania

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Raoultella sp.

ncbi_submitter: Guangxi University


ncbi_isolation_source: Liver abscess

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Para


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_organism_name: Gemmatimonadales bacterium UBA6960

ncbi_submitter: concordia university


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Mauritius

ncbi_isolation_source: Saccharum officinarum

ncbi_organism_name: Herbaspirillum rubrisubalbicans M1

ncbi_submitter: National Institute of Science and Technology of Biological Nitrogen Fixation/Federal University of Paraná


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Cryomorphaceae bacterium MED-G11

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 2

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Wyoming


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pacific; Franklin County; Missouri

ncbi_isolation_source: Computer Keyboard/Mouse

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Roseburia intestinalis


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: NIAB East Malling Research


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Arctic Ocean

ncbi_isolation_source: beach

ncbi_organism_name: Formosa sp. L2A11

ncbi_submitter: Shandong University


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_organism_name: Pseudolactococcus laudensis

ncbi_submitter: University of Copenhagen


ncbi_country: Thailand

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Jiangsu

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: AGROSAVIA


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: Table; meat shop

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Institute of Experimental Medicine


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pretoria


ncbi_country: Bolivia: La Paz

ncbi_isolation_source: UCC Isolate

ncbi_organism_name: Yersinia pestis

ncbi_submitter: US Food and Drug Administration


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_isolation_source: Peritoneal fluid

ncbi_organism_name: Staphylococcus aureus DAR5841

ncbi_submitter: Broad Institute


ncbi_organism_name: Syntrophomonas wolfei

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5320

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5320


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: USA: DC

ncbi_isolation_source: Stool

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_country: Japan

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_assembly_name: IMG-taxon 2619618825 annotated assembly

ncbi_organism_name: Microbulbifer donghaiensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU2 evolved under selective conditions; BHI evolved gen 950 Population GS

ncbi_organism_name: Citrobacter freundii

ncbi_strain_identifiers: RU2 BHI16

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: China: Guangxi; Dashan

ncbi_organism_name: Phycisphaerales bacterium


ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_isolation_source: sputum

ncbi_submitter: SC


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Medical Mycology Research Center


ncbi_assembly_name: Salmonella enterica CVM N46859 v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: Gopalganj Science and Technology University


ncbi_organism_name: Streptomyces tendae


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Metalysinibacillus sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Roseovarius sp. EC-SD190

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: Italy

ncbi_isolation_source: chicken salad

ncbi_organism_name: Listeria monocytogenes


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: Kazakhstan: Almaty

ncbi_isolation_source: Sputum collection

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center for Biotechnology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field NE area of North Tower vent

ncbi_isolation_source: biosyringe of microbial iron mat on a black smoker

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: University of Bergen


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Hydromonas sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_country: Morocco: Rabat-Sale-Zemmour-Zaer; Khemisset Province

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: CAU


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: Russia: Ust-Luga port

ncbi_isolation_source: sea water

ncbi_organism_name: Delftia tsuruhatensis

ncbi_submitter: IBPM RAS


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: University of Hawaii at Manoa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: Australia: Melbourne

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Pseudomonas sp. URIL14HWK12:I7

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Ghana: Pakro

ncbi_isolation_source: nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_submitter: Antibiotic Resistance Mechanisms Research Laboratory


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_organism_name: Candidatus Pacearchaeota archaeon

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;x__Candidatus Pacearchaeota;x__unclassified Candidatus Pacearchaeota;s__Candidatus Pacearchaeota archaeon


ncbi_country: Brazil: Piedade

ncbi_isolation_source: cabbage

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Yantai; Guangdang River

ncbi_isolation_source: estuarine sediment

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Synergistaceae bacterium UBA5276

ncbi_submitter: University of Queensland


ncbi_isolation_source: Distal colon


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Proteus vulgaris

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Lentimonas sp.

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__Verrucomicrobiota incertae sedis;g__Lentimonas;x__unclassified Lentimonas;s__Lentimonas sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: Virginia Tech


ncbi_organism_name: Nocardiopsis flavescens

ncbi_submitter: University of Fribourg


ncbi_organism_name: uncultured Marinoscillum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas soli

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Micromonospora chalcea


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: University of Sheffield


ncbi_country: Australia: Orpheus Island

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Deltaproteobacteria bacterium UBA4427

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA4427


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Viet Nam

ncbi_organism_name: Aeromonas hydrophila

ncbi_strain_identifiers: TN42;vAh ST251

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_country: India

ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: NCPPB 2586

ncbi_submitter: University of Exeter


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Genoscope CEA


ncbi_organism_name: Lawsonibacter asaccharolyticus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: seawater

ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Guam

ncbi_isolation_source: Coral Tissue

ncbi_organism_name: Brachybacterium sp. GU-2

ncbi_submitter: University of Guam


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Larissa


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: UZ Brussel


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Murdoch University


ncbi_country: China

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: College of Life Science


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: BGI


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 2 20 to 25cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Antarctica: Livingston island

ncbi_organism_name: Pseudomonas shahriarae

ncbi_submitter: Sofia University "St. Kliment Ohridski"


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Ganjang(Korean Soy Sauce)

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_isolate: Pseudomonas sp. Irchel 3H9

ncbi_organism_name: Pseudomonas sp. Irchel 3H9

ncbi_strain_identifiers: Pseudomonas sp. Irchel 3H9

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Monash University


ncbi_organism_name: Abiotrophia defectiva

ncbi_submitter: EMG


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: soil associated roots

ncbi_organism_name: Rhizobium sp. P28RR-XV

ncbi_submitter: Universidad de Buenos Aires


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium tyrobutyricum;x__Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: inguinal swab

ncbi_submitter: University of Sao Paulo


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Chongqing

ncbi_isolation_source: chicken meat

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Reading


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Reyranella sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces


ncbi_organism_name: Blautia faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Chung Hsing University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Paenibacillus thiaminolyticus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Spain

ncbi_isolation_source: vacuum-packaged beef

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: LHICA 40.4

ncbi_submitter: University of Santiago de Compostela


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: EMG


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_submitter: BIOTEC


ncbi_country: USA

ncbi_isolation_source: pasteurized milk

ncbi_organism_name: Paenibacillus sp. FSL H8-237

ncbi_submitter: Cornell University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Victivallis vadensis


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Solidesulfovibrio magneticus

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China

ncbi_isolation_source: laboratory

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Science College, Shantou University


ncbi_organism_name: Micromonospora sp. KLBMP9576

ncbi_submitter: Jiangsu Normal University


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Inha University


ncbi_country: USA: CA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Paenacidovorax caeni

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_country: Brazil: Maranhao;Sao Luis

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Streptococcus agalactiae MRI Z1-025

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Institute of Biochemistry and Biophysics, Polish Academy of Sciences


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: INRA P221

ncbi_submitter: University of Regina


ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Catania


ncbi_organism_name: Streptomyces luteosporeus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: urine

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV3094

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV3094


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-199

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella sp. NW61

ncbi_submitter: Sichuan University


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Michigan State University


ncbi_country: Greece: Kalymnos

ncbi_isolation_source: kidney of diseased fish

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_country: USA: Chicago; Illinois

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Streptomyces sp. CS62

ncbi_submitter: Purdue University


ncbi_country: Baltic Sea

ncbi_isolation_source: foot

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: INRA


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Streptococcus gallolyticus subsp. gallolyticus

ncbi_submitter: Region Zealand


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Nocardioides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: concordia university


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Enterococcus thailandicus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Caloranaerobacter sp. DY30410

ncbi_submitter: Third Institute of Oceanography, MNR


ncbi_organism_name: Segatella oulorum

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Pontimonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Mycoplasmopsis agalactiae

ncbi_submitter: University of Bern


ncbi_organism_name: Marinobacterium iners

ncbi_submitter: Ocean University of China


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_organism_name: Dyella sp. AtDHG13

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: University of East Anglia


ncbi_country: USA: University Park

ncbi_organism_name: Picosynechococcus sp. PCC 73109

ncbi_submitter: Pennsylvania State University


ncbi_country: Pacific Ocean

ncbi_isolation_source: surface-sea water

ncbi_organism_name: Marinobacter sp. 1-4A

ncbi_submitter: State Key Laboratory Breeding Base of Marine Genetic Resources


ncbi_organism_name: uncultured Paraglaciecola sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica

ncbi_isolation_source: water column

ncbi_organism_name: Pseudoalteromonas sp. TAE56

ncbi_submitter: University of Florence


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_organism_name: Enterobacter hormaechei subsp. xiangfangensis

ncbi_submitter: South China Agricultural University


ncbi_country: Japan

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Spain:Santa Pola

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: Centre for Genomic Regulation (CRG)


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Proteus columbae


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Oscillibacter sp. MSJ-31

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Galway


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: Bangladesh

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: CDC


ncbi_country: Turkey

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China

ncbi_isolation_source: maybe soil

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Microbacterium sp. SORGH_AS_0454

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: USA:Alaska; North Slope; Schrader Bluff formation

ncbi_isolation_source: oil reservoir sample SB1

ncbi_organism_name: Actinobacteria bacterium 66_15

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin Swab

ncbi_organism_name: Dermabacter sp. p3-SID358

ncbi_submitter: University of Wisconsin - Madison


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Denmark

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: Technische Universiteit Delft

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR30461

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- MJ110802A_bin-093

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Clostridium sp. CAG:307_30_263


ncbi_assembly_name: IMG-taxon 2599185165 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFPP18

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Kazakhstan: Taraz

ncbi_isolation_source: mud

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: National Center for Biotechnology


ncbi_isolation_source: Chicha; maize-based fermented beverage

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CECT 8966

ncbi_submitter: UVEG


ncbi_country: Saint Kitts and Nevis

ncbi_isolation_source: blood

ncbi_organism_name: Anaplasma platys

ncbi_submitter: INDICASAT AIP


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia: Gatton

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: La Trobe University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Mount Kenya University


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Faecalibacterium longum CLA-AA-H243

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: Biopesticide XenTari

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Colon

ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Lentzea sp. NPDC102401

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: MhyoNPL1v1.0 of Mycoplasma hyosynoviae strain NPL1 genome

ncbi_country: USA

ncbi_isolation_source: Pig

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Newport Laboratories, A Sanofi Company


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Pelolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_country: South Africa

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Bacillales bacterium UBA5732


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: uncultured Elusimicrobia bacterium


ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: BL

ncbi_submitter: Cochin hospital


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Calgary


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto


ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Bokeelia Pier; Pine Island; FL

ncbi_isolation_source: Gill tissue

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Stewartia floridana


ncbi_country: Czech Republic: Moravia

ncbi_submitter: Palacky University Olomouc


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas denitrificans (nom. rej.)

ncbi_submitter: University of Washington


ncbi_organism_name: Streptomyces sp. NPDC047070

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University