ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


gtdb_representative: t

ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Christensenella sp. UBA3859

ncbi_submitter: University of Queensland


ncbi_isolate: isolate

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: fermented milk

ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Key Laboratory of Dairy Biotechnology and engineering


ncbi_country: China: Wenzhou

ncbi_isolation_source: stool from neonate

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Bordetella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_country: Australia

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Fibrimonas termitidis

ncbi_submitter: The University of Queensland

ncbi_taxonomy: d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Candidatus Fibrimonadales;f__Candidatus Fibrimonadaceae;g__Candidatus Fibrimonas;s__Candidatus Fibrimonas termitidis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;c__Fibrobacteria;o__Candidatus Fibrimonadales;f__Candidatus Fibrimonadaceae;g__Candidatus Fibrimonas;s__Candidatus Fibrimonas termitidis


ncbi_country: USA

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: marine soil

ncbi_organism_name: Streptomyces violascens

ncbi_submitter: Ocean University of China


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: University of California, Berkeley


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: Aarhus University


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail chicken skin

ncbi_submitter: United States Department of Agriculture


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium CG1_02_40_25


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces


ncbi_isolation_source: bovine old calf liver

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gordonia amarae

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Neolewinella sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Novosphingobium lubricantis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Trichococcus flocculiformis


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Vibrio owensii

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Enterococcus sp. AZ129

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG793

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Bacillota bacterium


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Salmonella sp. C3242

ncbi_submitter: Sichuan University


ncbi_country: Brazil: Braganca

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_country: Canada: Nunavut; Northern Canada; Cambridge Bay

ncbi_isolate: CAM bin17

ncbi_isolation_source: soil

ncbi_organism_name: bacterium

ncbi_strain_identifiers: CAM bin17

ncbi_submitter: Monash University


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: National Health Research Institutes


ncbi_country: Netherlands

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Delft University of Technology


ncbi_assembly_name: Rumen uncultured genome RUG10934

ncbi_isolation_source: cattle rumen


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Burma

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Chicago


ncbi_isolation_source: microbial mat

ncbi_organism_name: Oscillatoriales cyanobacterium PMM_0059

ncbi_submitter: University of Liege


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_organism_name: Planctomycetales bacterium


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: USA: OR

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Butyricicoccus pullicaecorum

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1520

ncbi_submitter: Broad Institute


ncbi_submitter: SC


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Tanzania

ncbi_isolation_source: nasal swabs from HIV infected patient

ncbi_submitter: University of Bergen


ncbi_country: Australia

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: adult chinook salmon kidney

ncbi_organism_name: Mycobacteroides salmoniphilum

ncbi_refseq_category: reference genome

ncbi_submitter: Uppsala University

ncbi_type_material_designation: assembly from type material


ncbi_country: South Korea

ncbi_isolation_source: water

ncbi_organism_name: Janthinobacterium sp. SUN073

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: Denmark: Jaegersborg Dyrehave

ncbi_isolation_source: forest soil

ncbi_organism_name: Paenibacillus woosongensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudarthrobacter sp. PvP090

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Limosilactobacillus allomucosae

ncbi_strain_identifiers: WILCCON 0051

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Pseudoalteromonas nigrifaciens

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Actibacterium sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: intestine

ncbi_organism_name: Ligilactobacillus araffinosus DSM 20653

ncbi_submitter: Shanghai Majorbio


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Campylobacter lari

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_level: Chromosome

ncbi_country: USA: NY

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Prochlorococcus sp.


ncbi_country: USA: PA

ncbi_isolation_source: feces (Odocoileus virginianus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: CPI 39-1a

ncbi_submitter: University of Helsinki


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_country: USA

ncbi_organism_name: Vibrio parahaemolyticus 605

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 605


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_country: Czech Republic: Prague

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Masaryk University


ncbi_organism_name: Salmonella sp. SC1

ncbi_submitter: Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Geneva University Hospitals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Arcobacter cryaerophilus gv. pseudocryaerophilus

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Corynebacterium matruchotii

ncbi_submitter: Hospital Sirio-Libanes


ncbi_country: Mali: Koulikoro

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Brevundimonas diminuta


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AM33-14

ncbi_submitter: BGI


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: SC

ncbi_type_material_designation: assembly designated as neotype


ncbi_organism_name: Dubosiella newyorkensis


ncbi_country: China: Heihe; Heilongjiang

ncbi_organism_name: Bradyrhizobium viridifuturi

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: cold seep

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: bacterium 210820-DFI.6.37

ncbi_submitter: University of Chicago


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: University of Galway

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Hirschia litorea

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_isolate: SPRUCE 480

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 480

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Sulfurihydrogenibium sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Paraburkholderia sp. WSM4175

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Syntrophorhabdus sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Groningen


ncbi_country: USA: Georgia

ncbi_isolation_source: blood

ncbi_organism_name: Chimaeribacter arupi

ncbi_submitter: University of Utah


ncbi_assembly_name: freshwater MAG --- Umea2_bin-3128

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Japan

ncbi_isolation_source: Pond sediment

ncbi_organism_name: Metapseudomonas resinovorans

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: China: Zhangzhou

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Shewanella mangrovi


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 22 - depth 200m

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic

ncbi_isolation_source: urine

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Masaryk University


ncbi_country: Guinea-Bissau

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: EMG


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Nocardioides sp. Leaf307

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_submitter: Tsinghua University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__environmental samples;s__uncultured Candidatus Puniceispirillum sp.


ncbi_organism_name: uncultured Anaerofustis sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Japan: Toyama

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: USA: New Hampshire; Hampton Beach

ncbi_isolation_source: salt water

ncbi_organism_name: Cobetia marina


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: South Africa: Zola

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Pseudomonas sp. DSP3-2-2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Brazil: Porto Alegre

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: UNIVERSIDADE FEDERAL DE CIENCIAS DA SAUDE DE PORTO ALEGRE


ncbi_country: Montserrat

ncbi_isolation_source: volcanic; geothermal pool

ncbi_organism_name: Acidithiobacillus montserratensis

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfobacterium sp.

ncbi_submitter: University of Bremen


ncbi_country: Ecuador: Quito

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Central del Ecuador


ncbi_country: Turkey

ncbi_isolation_source: Blood Culture

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Dokuz Eylul University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Lithuania

ncbi_isolation_source: chicken meat

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Micromonospora haikouensis

ncbi_submitter: BGI Research


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Amycolatopsis sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_39_44


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Geothrix sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan: Mithi

ncbi_isolation_source: Plant Root

ncbi_organism_name: Niallia circulans

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: sterile tissue

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: EMG


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPLOWO2_02_FULL_39_26


ncbi_organism_name: Mycobacterium conspicuum

ncbi_submitter: University of Trento


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Mucilaginibacter sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Chengdu

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Yangzhou University


ncbi_organism_name: Serratia sp. CY33802

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY33802


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Avrilella dinanensis

ncbi_submitter: Fudan University


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: ballast tank

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Shandong university


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T56203

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas sp. BIGb0408

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Prochlorococcus sp. UBA1273

ncbi_submitter: University of Queensland


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: lung abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MIT


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Canada: Calgary

ncbi_isolation_source: stock

ncbi_submitter: University of Regina

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Humic Soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Kazakhstan: Almaty

ncbi_isolation_source: Swab from ear

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Scientific Center for Anti-infectious Drugs (SCAID)


ncbi_country: USA: Madison; WI

ncbi_isolation_source: sludge collected from the acid-phase digester of a two-phase anaerobic digestion process at the Madison Metropolitan Sewerage Disctrict Nine Springs Facility

ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: USA

ncbi_isolation_source: spleen

ncbi_organism_name: Weissella ceti NC36

ncbi_submitter: USAMRIID


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Microbacterium sp. NPDC007973

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Faecalibacterium sp.


ncbi_submitter: University Hospital Muenster


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Surat Basin; Queensland

ncbi_isolation_source: Filtered formation waters collected from the Coxon Creek 10 (CX-10) coalbed methane well

ncbi_organism_name: bacterium UBP18_UBA7526

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP18_UBA7526


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: EMG


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Marisediminitalea sp.

ncbi_submitter: Xiamen University


ncbi_assembly_name: IMG-taxon 2698536702 annotated assembly

ncbi_organism_name: Octadecabacter temperatus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Unknown

ncbi_isolation_source: blood

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: JCVI


ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 1506

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of California at Davis


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Bifidobacterium breve


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: The forth affiliated hospital of Guangzhou medical university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Acinetobacter baumannii 44437_4

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Japan


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 156

ncbi_submitter: Oregon State University


ncbi_organism_name: Roseibium sp. HPY-6

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Sherbrooke

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Zhengzhou

ncbi_isolation_source: urine

ncbi_submitter: First Affiliated Hospital of Zhengzhou University


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas parakoreensis

ncbi_submitter: Washington State University


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chung Shan Medical University


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Dysgonamonadaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Portugal

ncbi_isolation_source: vaginal swab

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Germany: Hesse; Gross-Gerau

ncbi_isolation_source: foods

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_country: Hungary

ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: University of Debrecen


ncbi_isolation_source: human gut

ncbi_organism_name: Coprobacter fastidiosus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Cryobacterium sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_isolate: Prevotella copri Bg2H3

ncbi_organism_name: Segatella copri

ncbi_strain_identifiers: Prevotella copri Bg2H3

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_assembly_name: Rumen uncultured genome RUG418

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 3106

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Spain: Granada

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Germany

ncbi_isolation_source: Nose throat swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_isolation_source: sputum

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_submitter: EMG


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_submitter: Universidad El Bosque


ncbi_assembly_name: freshwater MAG --- MJ130729B_bin-348

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sinobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Belgium

ncbi_isolation_source: Potato flake

ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: Universite Catholique de Louvain


ncbi_organism_name: Streptomyces sp. NPDC091215

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W56227

ncbi_submitter: Broad Institute


ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: uncultured Yoonia sp.


ncbi_organism_name: Liquorilactobacillus sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas sp. UM16

ncbi_submitter: Unversidad Michoacana de San Nicolas de Hidalgo


ncbi_organism_name: Shewanella mangrovisoli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Waterburya sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Bicetre hospital


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Streptomyces prunicolor

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Spain: Huelva

ncbi_isolation_source: solar saltern

ncbi_organism_name: Spiribacter roseus

ncbi_submitter: University of Seville


ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: EMG


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Mexico: La Cruz; Sinaloa State

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio mexicanus

ncbi_strain_identifiers: CAIM 1540

ncbi_submitter: CIAD, A.C. Mazatlan Unit for Aquaculture


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Universite de Rennes 1


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_country: USA: MD

ncbi_isolation_source: gut

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Tepidanaerobacteraceae bacterium


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM U1070


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: SC


ncbi_strain_identifiers: Fiocruz LV256

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV256


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. BCW_6467

ncbi_submitter: University of California at Davis


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Lebanon

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (large; >=63 micrometer filter)

ncbi_organism_name: Vibrio cyclitrophicus ZF28

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pusillimonas sp. SM2304

ncbi_submitter: Shandong University Qingdao Campus


ncbi_organism_name: Pseudoduganella aquatica

ncbi_submitter: Korea University


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Puniceispirillales bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__Candidatus Puniceispirillales bacterium


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Lucknow

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Christian Medical College


ncbi_country: China: Ningbo

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Czech Republic

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica

ncbi_organism_name: Caballeronia sordidicola

ncbi_submitter: Pukyong National University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: anaerobic digester filtrate obtained from the belt filter press of the CVWRF wastewater treatment plant

ncbi_organism_name: Candidatus Brocadia sp. UTAMX1

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp. UTAMX1


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1598530

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EBI


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Sansha

ncbi_isolation_source: sea water

ncbi_organism_name: Winogradskyella sp. SYSU M77433

ncbi_strain_identifiers: SYSU M77433

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella;x__unclassified Winogradskyella;s__Winogradskyella sp. SYSU M77433


ncbi_country: Guinea-Bissau

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Northeast Forestry University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Germany: Wilhelmshaven

ncbi_organism_name: Erythrobacter ani

ncbi_submitter: HZI-Helmholtz Centre for Infection Research


ncbi_country: USA: Washington; Richmond Mine C10

ncbi_isolation_source: biofilm

ncbi_organism_name: Leptospirillum ferriphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus benefaciens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus benefaciens


ncbi_country: USA: GA

ncbi_isolation_source: peanut butter

ncbi_submitter: Arizona State Public Health Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: Canada: Granum

ncbi_isolation_source: Cattle feces

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: India: Haridwar

ncbi_isolation_source: Fresh water; Ganges River

ncbi_organism_name: Pseudomonas sp. HAR-UPW-AIA-41

ncbi_submitter: CSIR-IMTECH


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Plant

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_organism_name: Escherichia coli KTE17

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Escherichia coli B41

ncbi_submitter: E. coli Reference Center


ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: Korea Maritime & Ocean University


ncbi_country: USA:Mississippi Sandhill Crane National Wildlife Refuge

ncbi_isolate: Sandhill Crane

ncbi_organism_name: Rickettsia parkeri

ncbi_strain_identifiers: Sandhill Crane

ncbi_submitter: National Institute of Allergy and Infectious Diseases


ncbi_organism_name: Streptomyces sp. NE06-03E

ncbi_submitter: Oregon State University


ncbi_assembly_name: freshwater MAG --- Loc081215-6m_bin-1013

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: South Africa

ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Vienna


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Australia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Queensland Department of Health


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Morocco: Douar Hjar Melaghi; Ouezzane province

ncbi_isolation_source: saline soil; wetland

ncbi_organism_name: Marinobacter maroccanus

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG13895

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Firmicutes bacterium UBA3931

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA3931


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Phytobacter massiliensis

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Drexel


ncbi_organism_name: Nocardia tengchongensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Pauljensenia sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: Chiang Mai University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Vicinamibacteria bacterium


ncbi_country: Singapore

ncbi_submitter: Shandong University


ncbi_country: Brazil: Fortaleza


ncbi_organism_name: Pseudomonas kurunegalensis

ncbi_submitter: Research Group on Difficult to Diagnose and Treat Infections. Institute for Health Research Aragon


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Boston College


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: not available: to be reported later

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Argentina

ncbi_isolation_source: Osteomyelitis

ncbi_organism_name: Staphylococcus aureus DAR3165

ncbi_submitter: Broad Institute


ncbi_country: Colombia

ncbi_isolation_source: abdomen

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Bern


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. AFS073361

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS073361


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Purdue University


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_country: USA: MD

ncbi_isolation_source: post chill chicken carcass

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Madurai Kamaraj University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Elusimicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Flavobacteria bacterium BBFL7

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;x__unclassified Flavobacteriia;s__Flavobacteria bacterium BBFL7


ncbi_country: Canada: BC

ncbi_isolation_source: Wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: India: Punjab

ncbi_isolation_source: Rice seed

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: pharyngeal exudate from child s pharynx

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma de Sinaloa


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Israel

ncbi_isolation_source: animal

ncbi_submitter: Sheba medical center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Java


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Actinomyces sp. ZJ308

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Huzhou cdc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Great Salt Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Oleiphilaceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Serratia plymuthica

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: China: Tianjin

ncbi_isolation_source: feces

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Ghent University


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Segatella copri

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID2119

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Nitrospina sp.

ncbi_submitter: EMG


ncbi_country: China: Shanghai City

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Czech Republic

ncbi_isolation_source: carrot

ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: FDA/CFSAN


ncbi_country: Poland

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSUF


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Sphingomonadaceae bacterium


gtdb_type_species_of_genus: t

ncbi_organism_name: Bordetella pertussis 18323

ncbi_submitter: WTSI


ncbi_country: Portugal: Lisbon

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Institute of Health, Portugal


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Canada: Waterloo

ncbi_isolate: SO_2017_CLC bin 93

ncbi_isolation_source: leachate from a composite leachate cistern at an active municipal landfill in Southern Ontario

ncbi_organism_name: Arcobacteraceae bacterium

ncbi_strain_identifiers: SO_2017_CLC bin 93

ncbi_submitter: University of Waterloo


ncbi_country: China: Beijing City

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 23671

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Peptococcaceae bacterium UBA6096

ncbi_submitter: University of Queensland


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of Washington


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: MI

ncbi_organism_name: Rhodococcus sp. 06-412-2B

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 06-412-2B


ncbi_organism_name: Limnospira platensis YZ

ncbi_strain_identifiers: YZ

ncbi_submitter: Wenzhou Medical University


ncbi_country: China

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Second Affiliated Hospial of Zhejiang University, School of Medicine


ncbi_country: Czech Republic: Prague

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter higginsii

ncbi_strain_identifiers: NIPH 605

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: pill bugs from backyard

ncbi_organism_name: Rickettsiella grylli

ncbi_submitter: TIGR


ncbi_country: USA: Texas

ncbi_isolation_source: clinical

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_country: Malawi: Machinga

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Yale School of Public Health


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Lysobacter sp. TY2-98

ncbi_submitter: Korean Research Institute of Bio-Science & Bio-Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Dog

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Limosilactobacillus fastidiosus

ncbi_submitter: University of Alberta


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Dolosigranulum savutiense

ncbi_submitter: Duke University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Treponema sp. UBA7578

ncbi_submitter: University of Queensland


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Rhodococcus sp. 5A-K4

ncbi_submitter: Institute of Ecology and Genetics of Microorganisms of the Ural Branch of the RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 5A-K4


ncbi_organism_name: Streptomyces sp. YIM B13502

ncbi_submitter: Yunnan University


ncbi_organism_name: Streptomyces tsukubensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces salinarius

ncbi_submitter: University of Melbourne


ncbi_submitter: Canadian Research Institute for Food Safety

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_organism_name: uncultured Pleurocapsa sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Novosphingobium resinovorum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_organism_name: Megasphaera sp.


ncbi_organism_name: Streptomyces sp. NPDC050509


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SBM Research Institute of Rospotrebnadzor


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Agricultural University of Athens


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Denitrobaculum sp.


ncbi_organism_name: Escherichia albertii

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_isolation_source: Human feces

ncbi_organism_name: Eubacterium sp. LMAG:35

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. LMAG:35


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy

ncbi_isolation_source: urine

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA: Bowling Green; Ohio

ncbi_organism_name: Pseudomonas sp. S5F11

ncbi_submitter: University of Michigan


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus infantis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Anaerolineaceae bacterium UBA4063

ncbi_submitter: University of Queensland


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Smithellaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Burkholderia  cenocepacia BCC0315

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Brevundimonas sp. UBA5713


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: IMG-taxon 2617270770 annotated assembly

ncbi_organism_name: Alkalimonas amylolytica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: South Carolina

ncbi_isolation_source: pharyngeal mucosa

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_submitter: University of Technology Sydney


ncbi_country: New Zealand: Christchurch

ncbi_isolation_source: Wrist

ncbi_organism_name: Kingella kingae

ncbi_submitter: Canterbury Health Laboratories


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_isolation_source: caecum

ncbi_organism_name: Megamonas hypermegale

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AM22-13

ncbi_submitter: BGI


ncbi_organism_name: Klebsiella sp. 93445

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: the South China Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Rubrobacter marinus

ncbi_strain_identifiers: SCSIO 52915

ncbi_submitter: South China Sea Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Marinosulfonomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: United Kingdom

ncbi_isolation_source: Retropharyngeal lymph node abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Polaromonas sp. CG_9.5

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_country: Norway

ncbi_isolation_source: Intesting; Herring

ncbi_organism_name: Photobacterium iliopiscarium

ncbi_strain_identifiers: NCIMB 13355

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Science, Vietnam national university - Ho Chi Minh city


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Zhejiang university


ncbi_country: Singapore: Singapore General Hospital

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: USA

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: USA: DC

ncbi_isolation_source: CVP blood

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Chloroflexia bacterium


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Sichuan University


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Tyler; Texas

ncbi_isolation_source: Respiratory specimen

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Regina


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Slaughterhouse

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: pharynx

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UERJ - Universidade do Estado do Rio de Janeiro


ncbi_organism_name: Aquimonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada

ncbi_isolation_source: raw almonds

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: University of Massachusetts Amherst


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Israel

ncbi_isolation_source: cowshed 9

ncbi_submitter: Heriot-Watt University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Enterococcus hailinensis

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Candidatus Aphodomorpha sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Aphodomorpha;x__unclassified Candidatus Aphodomorpha;s__Candidatus Aphodomorpha sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_submitter: Colorado State University


ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Peru

ncbi_isolation_source: gastric cancer patient

ncbi_organism_name: Helicobacter pylori PeCan4

ncbi_submitter: Dept. of Molec. Microbiology, Washington University Medical School, Saint Louis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gloeomargarita sp. DG_1_4_bins_134

ncbi_submitter: Sun Yat-sen University


ncbi_country: Switzerland: Mt Terri URL; St-Ursanne

ncbi_isolation_source: Opalinus Clay rock porewater BRC-3 borehole

ncbi_organism_name: Sphingomonadales bacterium BRH_c3


ncbi_isolation_source: urine

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_organism_name: Limosilactobacillus sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Brevefilum sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Brevifilum;x__unclassified Candidatus Brevefilum;s__Candidatus Brevefilum sp.


ncbi_country: Australia: Western Australia

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: Oregon State University


ncbi_organism_name: Kaistella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: Zhejiang university


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H57822

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Australia

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_isolation_source: marine metagenome


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: soil from Salvador

ncbi_organism_name: Streptomyces sp. NRRL S-241

ncbi_strain_identifiers: NRRL S-241

ncbi_submitter: University of Illinois


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_country: USA

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: lake water

ncbi_organism_name: Ignavibacteria bacterium UBA4661

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium UBA4661


ncbi_country: USA: GA

ncbi_isolation_source: water pond

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: KCKM 0106

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: University of Manitoba


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Germany

ncbi_isolation_source: Tracheal secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE