ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: FDA/CFSAN


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Lysinibacillus sp. NPDC097162

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangdong

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Russia: Republic of Tatarstan

ncbi_isolation_source: Ready-to-cook meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis EnGen0087

ncbi_submitter: Broad Institute


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_country: Brazil: Sao Paulo; SP

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Thermophilic and cellulolytic compost-derived microbial consortium ZCTH02

ncbi_organism_name: Thermobacillus sp. ZCTH02-B1

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Spain

ncbi_isolation_source: moribund fish

ncbi_organism_name: Aeromonas piscicola

ncbi_submitter: Universitat de Barcelona


ncbi_assembly_name: freshwater MAG --- YR_bin-0120

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: gut

ncbi_organism_name: Acetobacter pomorum DM001

ncbi_submitter: Division of molecular life science, Ewha Woman's University and National Creative Research Initiative Center for Symbiosystem


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Escherichia coli O121

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Tunisia

ncbi_isolation_source: food

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


gtdb_type_species_of_genus: t

ncbi_isolation_source: Human periodontal pocket

ncbi_organism_name: Tannerella forsythia

ncbi_submitter: BOKU Vienna

ncbi_type_material_designation: assembly from type material


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Salmonella sp. CQ23WZ0144SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: EMG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia

ncbi_isolation_source: Tissue

ncbi_submitter: University of Melbourne


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: South Korea: Incheon

ncbi_organism_name: Paenibacillus mellifer

ncbi_refseq_category: reference genome

ncbi_submitter: Incheon National University


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Australia: Mundubbera

ncbi_isolation_source: Pool

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Kenya

ncbi_submitter: SC


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_level: Chromosome

ncbi_organism_name: Corynebacterium incognita

ncbi_submitter: IHU - Mediterannee Infection


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii 24812_10

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Omnitrophica WOR_2 bacterium GWC2_44_8

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica WOR_2 bacterium GWC2_44_8


ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: uncultured Parvibaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Japan:Ehime; Ainan

ncbi_isolation_source: water

ncbi_organism_name: Jannaschia sp. AI_61

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_country: China: Hunan

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_country: China: Sichuan

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Parabacteroides sp. ZJ-118

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V33_P6A3T137

ncbi_submitter: Instituto de ecologia


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Planomicrobium sp. HSC-17F08

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: Netherlands: Flevoland; Creil

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_country: USA:New York Genesee

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood

ncbi_organism_name: Cupriavidus cauae

ncbi_submitter: Chung-Ang university hospital


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: USA: Maryland

ncbi_isolation_source: Heads

ncbi_organism_name: Bacillus sp. S29

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. S29


ncbi_country: USA: Fort Ross; California

ncbi_isolation_source: plant

ncbi_organism_name: Rathayibacter sp. VKM Ac-2879

ncbi_strain_identifiers: VKM Ac-2879

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_country: United Kingdom: London

ncbi_isolation_source: Soft lesion

ncbi_organism_name: Actinomyces naeslundii

ncbi_submitter: King's College London


ncbi_country: Japan

ncbi_isolation_source: drain tip

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho university


ncbi_country: Colombia: Tuquerres

ncbi_isolation_source: gastric sample

ncbi_organism_name: Helicobacter pylori PZ5086

ncbi_submitter: MIT


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: uncultured Bordetella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA4916

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA4916


ncbi_country: USA: OK

ncbi_isolation_source: Feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: California; Middletown

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Burkholderia glumae AU6208

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: NY

ncbi_isolation_source: colon (Canis lupus)


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Metamycoplasma sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Lactococcus sp. AK05

ncbi_submitter: University of North Bengal


ncbi_organism_name: Mycobacterium sp. BK558

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_country: South Korea: Iksan

ncbi_isolation_source: clay soil

ncbi_organism_name: Neobacillus sp. OS1-2

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: lake water

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Toho University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_organism_name: uncultured Mycoplasmatales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Wyoming

ncbi_isolation_source: retail meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Wyoming


ncbi_organism_name: Staphylococcus aureus M1078

ncbi_submitter: Broad Institute


ncbi_country: Canada: British Columbia;Surrey

ncbi_isolation_source: stream water

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Malaysia: Penang

ncbi_isolation_source: seawater

ncbi_organism_name: Bacillus sp. G1(2015b)

ncbi_submitter: University of Malaya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. G1(2015b)


ncbi_organism_name: Paenibacillus sp. FSL R5-0517

ncbi_submitter: Penn State


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_submitter: BIOTEC


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: University of Saskatchewan


ncbi_country: China: Jiangxi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the First Affiliated Hospital of Nanchang University


ncbi_country: Cambodia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Guangxi

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: BAMA 0397

ncbi_submitter: Harbin Medical University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: University of Galway


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Finland

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Otago


ncbi_country: Taiwan

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Azospirillum formosense

ncbi_submitter: UFRGS


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Dietzia sp.

ncbi_submitter: University of Calgary


ncbi_country: China: Guangdong

ncbi_isolation_source: urinary tract

ncbi_submitter: China Agricultural University


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: University of Lethbridge


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: Roseburia sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Streptomyces sp. NPDC101175

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Roseburia hominis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Anaerococcus senegalensis

ncbi_submitter: EMG


ncbi_organism_name: Leuconostoc mesenteroides subsp. mesenteroides

ncbi_strain_identifiers: NBRC 3832

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Streptomyces sp. LPB2020-019-1HS

ncbi_submitter: Irkutsk State University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alcanivorax sp.


ncbi_country: China: Shandong

ncbi_isolation_source: commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG128

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_country: Pakistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University


ncbi_country: Germany

ncbi_isolation_source: fermented fish sauce

ncbi_organism_name: Staphylococcus carnosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Canada: Quebec City

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Northwestern University


ncbi_assembly_name: CCCM 127

ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: CCCM 127

ncbi_submitter: The University of Queensland


ncbi_organism_name: Phocicoccus pinnipedialis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Salmonella sp. NW179

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Streptomyces sp. NPDC059164


ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Gono Bishwabidyalay


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Smithella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Nocardia sp. GCM10030253

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Liverpool


ncbi_organism_name: uncultured Ligilactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Deinococcus sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: urine

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_country: Peru: Lima

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Desulfotignum sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: China: Hangzhou

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolate: 1Shewanella algidipiscicola H1

ncbi_organism_name: Shewanella algidipiscicola

ncbi_strain_identifiers: 1Shewanella algidipiscicola H1

ncbi_submitter: CNRS - CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQU


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Faecalibaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Nevskiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Massey University


ncbi_country: USA: Oak Ridge; Tennessee

ncbi_isolation_source: saprolite core

ncbi_organism_name: Anaerosporomusa subterranea

ncbi_submitter: Rutgers, The State University of New Jersey


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 62-1976


ncbi_country: India: Uttar Pradesh; Jaunpur; Kachwan

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Enterococcus pallens ATCC BAA-351

ncbi_strain_identifiers: ATCC BAA-351

ncbi_submitter: Broad Institute


ncbi_organism_name: Rubrobacter sp.


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: HeNan

ncbi_isolation_source: sputum

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: IMG-taxon 2622736522 annotated assembly

ncbi_organism_name: Pacificibacter marinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG12069

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Guangdong; Guangzhou

ncbi_isolation_source: vegetable

ncbi_submitter: South China Agriculture University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: uncultured Hydrogenophaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite de Caen


ncbi_organism_name: Candidatus Helicobacter avistercoris

ncbi_submitter: Quadram Institutte


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-47B

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_isolation_source: Environmental; maize

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-201

ncbi_submitter: JCVI


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine environment

ncbi_organism_name: Synechococcus sp. M16.1

ncbi_submitter: Station Biologique de Roscoff (CNRS - Sorbonne University)


ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus urinae

ncbi_submitter: Loyola University Chicago


ncbi_country: Guinea-Bissau

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Enterovibrio sp. Hal110

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Spain

ncbi_submitter: Hospital Ramon y Cajal


ncbi_country: USA: Montana

ncbi_organism_name: Enterococcus sp. 5B3_DIV0040

ncbi_submitter: Broad Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis Nm10259

ncbi_submitter: Wayne State University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Oligoflexus sp.

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces sp. NBC_00236

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Colombia

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Aminiphilus circumscriptus DSM 16581

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC056465

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Streptomyces sp. NPDC059709


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: uncultured Lichenihabitans sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Paenibacillus elgii

ncbi_submitter: China Agricultural University


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Pantoea sp. RHCKP32

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_assembly_name: freshwater MAG --- E14_bin-0123

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_organism_name: Salmonella sp. CQ23WZ0172SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG14223

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: chicken meat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: National Center for Food Safety Risk Assessment


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut

ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Enterococcus hirae


ncbi_country: China: HaiNan; HaiKou

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Hainan General Hospital


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Sporosarcina sp. YIM B06819

ncbi_submitter: Yunnan Institute of Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Sporosarcina;x__unclassified Sporosarcina;s__Sporosarcina sp. YIM B06819


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: A*STAR


ncbi_organism_name: uncultured Microbacteriaceae bacterium


ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Russia: Buryats

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Listeria cossartiae subsp. cayugensis

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cayugensis


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Chengdu

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Yangzhou University


ncbi_country: Brazil: Sao Paulo;Sao Jose do Rio Preto

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Isolate 22

ncbi_submitter: University of Siena


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: BAL

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_country: Algeria

ncbi_isolation_source: Sahara

ncbi_organism_name: Actinopolyspora mortivallis

ncbi_submitter: University of Sciences and Technology HOUARI BOUMEDIENE


ncbi_isolation_source: food

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Netherlands: Terschelling

ncbi_isolation_source: Dune grassland

ncbi_organism_name: Collimonas pratensis

ncbi_submitter: Netherlands Institute of Ecology


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: feces


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Michigan

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Tech


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Colombia: Bogota

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Streptomyces sp. NPDC047061

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: University of Wroclaw


ncbi_country: USA: California

ncbi_isolation_source: abdominal drainage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCLA Medical Center


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Bavaria

ncbi_organism_name: Apilactobacillus xinyiensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand

ncbi_isolation_source: fermented soybean

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei


ncbi_isolation_source: tassajara hot spring

ncbi_organism_name: Chlorobaculum thiosulfatiphilum

ncbi_strain_identifiers: DSM 249

ncbi_submitter: Bellevue University


ncbi_assembly_name: Rumen uncultured genome RUG12427

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Aeribacillus composti

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium bifidum;x__Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_organism_name: Luteimonas terrae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Aliarcobacter sp. ERUVET-8

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Shimia thalassica

ncbi_submitter: University of Southern California


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: France: Lille

ncbi_isolation_source: broncho-alveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: thermophilic methanogenic bioreactor

ncbi_organism_name: Neomoorella thermoacetica

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Desulfobacteraceae bacterium


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Bethesda

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: University of Zurich


ncbi_isolate: SPRUCE 566

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_strain_identifiers: SPRUCE 566

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Exiguobacterium sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__environmental samples;s__uncultured Exiguobacterium sp.


ncbi_submitter: EMG


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC090303

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Gordonibacter urolithinfaciens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Roseivirgaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Pantoea sp. ANP04

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_organism_name: uncultured Ascidiaceihabitans sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0282

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Belgium

ncbi_isolation_source: beer

ncbi_organism_name: Pediococcus damnosus LMG 28219

ncbi_submitter: Ghent University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Pediococcus;s__Pediococcus damnosus;x__Pediococcus damnosus LMG 28219


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: Chulalongkorn University


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: China: Guide

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B3825

ncbi_submitter: China Agricultural University


ncbi_isolation_source: urine

ncbi_submitter: Swansea University


ncbi_country: China: Shandong

ncbi_submitter: China Aricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Haliscomenobacter sp.

ncbi_submitter: Rutgers University


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China

ncbi_submitter: Yangzhou university


ncbi_country: Spain

ncbi_isolation_source: water

ncbi_organism_name: Salinivibrio kushneri

ncbi_submitter: Universidad de Sevilla


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: USA: Rochester; NY

ncbi_submitter: URMC


ncbi_country: Korea: Gwangju

ncbi_isolation_source: Mandibular osteomyelitis

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Chosun University


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Kerstersia gyiorum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus sp. ABP14

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. ABP14


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Syntrophobacterales bacterium GWF2_56_9

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Czech Republic: Moravia

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Stanford Healthcare


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: World Institute of Kimchi


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU012

ncbi_submitter: Technical University of Denmark


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: marine sediments

ncbi_organism_name: Pseudomonas mandelii

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Flavitalea sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maine


ncbi_country: South Korea:Pyeongchang-gun

ncbi_isolation_source: breast

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Seoul National University


ncbi_country: China: Beijing

ncbi_isolation_source: egg surface

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: China: Changsha

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Xiangya hospital, Central South University


ncbi_organism_name: uncultured Thermotogaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Chelativorans composti

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Acidaminococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: bioreactor

ncbi_organism_name: Oblitimonas sp. UBA2439

ncbi_submitter: University of Queensland


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain: Canary Island

ncbi_isolation_source: root nodules

ncbi_organism_name: Mesorhizobium neociceri

ncbi_submitter: Universidad de Salamanca


ncbi_submitter: University of Wisconsin Madison


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Proteus penneri

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: USA: Alabama; Macon

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Auburn University


ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_submitter: Wageningen University & Research

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_assembly_name: gabuh6907 v01

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii UH6907

ncbi_submitter: J. Craig Venter Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: NIAB East Malling Research


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AMR research center, National Institute of Infectious Diseases


ncbi_organism_name: Pediococcus ethanolidurans

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: University of Helsinki


ncbi_country: USA: WA

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Washington


ncbi_country: USA: Pillar Point Harbor; San Mateo Co.

ncbi_isolation_source: genital swab

ncbi_organism_name: Mycoplasma miroungigenitalium

ncbi_submitter: US FDA


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: ETT

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute for medical research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Moline; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas sp. Z1-12

ncbi_submitter: KAUST


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Victivallaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: vaginal swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: vaginal swab

ncbi_submitter: University of West London


ncbi_organism_name: Flavobacteriales bacterium DA487

ncbi_submitter: shandong University at Weihai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__unclassified Flavobacteriales;s__Flavobacteriales bacterium DA487


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Hyphomicrobiaceae bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan: Hokkaido

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Byssovorax sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Desulfovibrio piger


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Erysipelotrichaceae bacterium 7770_A6

ncbi_submitter: National Institutes of Health


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: China: Guangxi

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. BGMRC0062

ncbi_submitter: Guangxi University of Chinese Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BGMRC0062


ncbi_submitter: Duke University


ncbi_country: Thailand

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Mahidol University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- E2_bin-848

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: enrichment cultures HLUCC-A and HLUCC-O from microbial mat sample

ncbi_organism_name: Algoriphagus marincola HL-49

ncbi_submitter: Pacific Northwest National Laboratroy


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Nitrospira sp. SB0675_bin_23

ncbi_submitter: University of Queensland


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: USA: Philadelphia; PA

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: WWTP Brno

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Pseudomonas rhodesiae


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_country: Italy

ncbi_isolation_source: gut

ncbi_submitter: University of Southampton


ncbi_submitter: Northeast Forestry University


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sheep faecal samples collected from floor of farm

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Korea

ncbi_isolation_source: pepper soil

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Shin's Lab


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: China

ncbi_isolation_source: Respiratory Medicine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom:London

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Stagnimonas sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Agrobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Faecalitalea sp. UBA4312

ncbi_submitter: University of Queensland


ncbi_country: Australia: Newcastle

ncbi_organism_name: Klebsiella aerogenes


ncbi_organism_name: Jejuia pallidilutea

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Slovenia

ncbi_organism_name: Prevotella sp. E15-22

ncbi_submitter: University of Ljubljana


ncbi_country: Kenya: Nairobi

ncbi_isolation_source: skin soft tissue

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya


ncbi_country: China: Beijing

ncbi_isolation_source: skin

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Ileo-caecum


ncbi_country: USA: Texas; Weatherford

ncbi_isolation_source: guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Life Science


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB241_528N20

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudooceanicola sp.

ncbi_submitter: Xiamen University


ncbi_country: Singapore

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Rio Grane do Sul

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant pinnipedii


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Cutibacterium acnes


ncbi_organism_name: Sphingopyxis sp. BE235

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_submitter: sichuan university


ncbi_country: Japan:Okinawa; Hatoma Knoll

ncbi_isolation_source: marine hydrothermal vent chimney

ncbi_organism_name: Nitratiruptor sp. YY08-14

ncbi_submitter: Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology


ncbi_isolation_source: tundra soil

ncbi_organism_name: uncultured Candidatus Udaeobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__environmental samples;s__uncultured Candidatus Udaeobacter sp.


ncbi_organism_name: Aminipila sp.


ncbi_isolation_source: traditional fermented soybean

ncbi_organism_name: Bacillus sp. DU-106

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. DU-106


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_country: France

ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Streptomyces sp. NPDC020766

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Aspiration

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China: Jiangmen City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli


ncbi_country: China

ncbi_isolation_source: hospital sewage

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium bovis

ncbi_submitter: Duke University


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_country: USA: Vermont

ncbi_isolation_source: Cheese rind

ncbi_organism_name: Halomonas sp. JB37

ncbi_submitter: Dutton Lab, UCSD


ncbi_country: USA: Edgewood; NM

ncbi_isolation_source: male sample

ncbi_submitter: US Army Edgewood Chemical Biological Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis;x__Yersinia pestis subsp. pestis bv. Orientalis;x__Yersinia pestis biovar Orientalis str. BA200902009


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M1158

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Erciyes University


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Japan Institute for Health Security


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shanghai Hongkou District Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the First Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_submitter: Jilin Agricultural University


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Streptomyces sp. NPDC058672

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Prevotella pallens

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_organism_name: Alkalinema pantanalense CENA528

ncbi_submitter: Center for Nuclear Energy in Agriculture (CENA) -University of Sao Paulo (USP)


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Jilin university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: bacterium

ncbi_submitter: Shenzhen University


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: University of Guelph


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: University of Southern California


ncbi_country: USA: Virgin Islands

ncbi_isolation_source: thigh lesion

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Kvitko Lab


ncbi_country: Australia

ncbi_isolation_source: ear

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: New Zealand

ncbi_isolation_source: cheese starter

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: CIRM-BIA 79

ncbi_submitter: Brigham Young University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: India

ncbi_organism_name: Mycobacterium colombiense

ncbi_submitter: JCVI


ncbi_submitter: National Veterinary Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Molade


ncbi_assembly_name: freshwater MAG --- Umea2_bin-1292

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom: Northern Ireland

ncbi_isolation_source: meat environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Northumbria University


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kottbus


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Reyranella sp.

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Tomsk region

ncbi_isolation_source: acidic peat soil (pH 4.0) sampled at a depth of 10-20cm (with a water table at approximately 15cm depth) of the Sphagnum peat bog Bakchar

ncbi_organism_name: Schlesneria paludicola DSM 18645

ncbi_submitter: Building No.11|Beishan Industial Zone|Yantian District|Shenzhen 518083|China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__Schlesneria;s__Schlesneria paludicola;x__Schlesneria paludicola DSM 18645


ncbi_assembly_name: Rumen uncultured genome RUG14455

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Russia

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_assembly_name: R-75598 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_organism_name: Desulfomonilia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Germany: Lower Saxony

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Portugal

ncbi_isolation_source: raw wastewater

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidade Catolica Portuguesa


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium bifidum


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_isolation_source: digestive tract (UBERON:0001555); intestine (UBERON:0000160)

ncbi_organism_name: Alistipes sp. UBA3409

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: Norwich laboratory

ncbi_organism_name: Streptomyces sp. M3

ncbi_submitter: University of East Anglia


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter sp.

ncbi_submitter: The University of Queensland


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Brevinema andersonii

ncbi_submitter: University Duisburg-Essen


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: Antarctic soil

ncbi_organism_name: Rahnella inusitata

ncbi_submitter: Network for Extreme Environment Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Minnesota Duluth


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Sphingomonas koreensis

ncbi_strain_identifiers: ABOJV

ncbi_submitter: NHGRI


ncbi_assembly_name: Rumen uncultured genome RUG10222

ncbi_organism_name: Candidatus Avelusimicrobium luingense

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: USA: CA

ncbi_isolation_source: beef and potato burrito

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Gordonia alkanivorans

ncbi_submitter: xihua university


ncbi_country: Malaysia


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Johns Hopkins University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: patient

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_organism_name: Acholeplasma laidlawii PG-8A

ncbi_submitter: Research Institute for Physico-Chemical Medicine


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: OH

ncbi_isolation_source: root

ncbi_organism_name: Bacillus sp. AFS017274

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS017274


ncbi_country: USA: Wisconsin

ncbi_isolation_source: marsh soil

ncbi_organism_name: Cellulomonas sp. A375-1

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Svalbard

ncbi_isolation_source: soil

ncbi_organism_name: Pedobacter mucosus

ncbi_submitter: Wuhan University


ncbi_organism_name: Borreliella burgdorferi 72a

ncbi_submitter: J. Craig Venter Institute


ncbi_assembly_name: Rumen uncultured genome RUG12406

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Russia: Moscow

ncbi_isolation_source: sour milk

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: The Federal Research Centre "Fundamentals of Biotechnology" of the Russian Academy of Sciences


ncbi_country: Australia: Queensland

ncbi_isolation_source: Skin lesion swab

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: The University of Queensland


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P39RS

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P39RS


ncbi_strain_identifiers: ATCC BAA-847

ncbi_submitter: National Center for Global Health and Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;s__Helicobacter cinaedi;x__Helicobacter cinaedi CCUG 18818 = ATCC BAA-847


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Urine

ncbi_submitter: SC


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Micrococcus luteus

ncbi_strain_identifiers: 179-B 5C NHS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Komagataeibacter xylinus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter sp. DN

ncbi_strain_identifiers: DN

ncbi_submitter: China West Normal University


ncbi_organism_name: Streptomyces sp. NPDC056291

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_isolate: SPRUCE 589

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 589

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolate: AJITA

ncbi_organism_name: Acetilactobacillus jinshanensis

ncbi_strain_identifiers: AJITA

ncbi_submitter: Universidade Federal de Uberlandia


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 14d patty soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Peking university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Corynebacterium sp. KPL2636

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Kocuria sp. SL71

ncbi_submitter: Joint Microbiome Facility


ncbi_assembly_name: freshwater MAG --- Loc090519-1m_bin-2021

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Prevotella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: wound/abscess

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: JCVI


ncbi_organism_name: Enterobacter cloacae complex sp. S1

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. S1


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: freshwater MAG --- YR_bin-2355

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_assembly_name: freshwater MAG --- F14_bin-0734

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: Throat Culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chicago


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis