ncbi_country: South Korea: Jeonam; Juam reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Terriglobus aquaticus

ncbi_submitter: Sun Yat-sen University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: India

ncbi_genome_representation: full

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_assembly_level: Scaffold

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Viet Nam: Quang Binh

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Genome Research


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow intestine small

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptomyces fulvorobeus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: SAHMRI


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_name: freshwater MAG --- Loclat_bin-15959

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: USA

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Kenya: Kajiado County

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: EMG


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Argonne National Laboratory


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_submitter: sichuan university


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_organism_name: Capnocytophaga sputigena


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: passage 25 in MRS medium of strain P-8

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Erythrobacteraceae bacterium


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: University of Iowa

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_isolation_source: body surface lesions

ncbi_organism_name: Vibrio echinoideorum

ncbi_submitter: UNIVERSITY OF BIRMINGHAM


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfurobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: IMG-taxon 2593339208 annotated assembly

ncbi_organism_name: Ruminococcaceae bacterium YAD3003

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


gtdb_type_species_of_genus: t

ncbi_country: Japan

ncbi_isolation_source: flower

ncbi_refseq_category: reference genome

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Holzapfeliella;s__Holzapfeliella floricola;x__Holzapfeliella floricola DSM 23037 = JCM 16512


ncbi_assembly_level: Chromosome

ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0315

ncbi_submitter: Texas A&M University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_country: Puerto Rico: YABUCOA

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia sp. Bp9015

ncbi_submitter: Northern Arizona University


ncbi_country: Finland: Helsinki

ncbi_isolation_source: Marinated rainbow trout

ncbi_organism_name: Leuconostoc gasicomitatum

ncbi_submitter: University of Helsinki


ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: dairy product

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Treponema sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China

ncbi_isolation_source: wound secretion

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Tagaea sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: Kwazulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 4

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Trichococcus flocculiformis


ncbi_organism_name: Campylobacter coli

ncbi_submitter: dtu national food institute


ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Cornell University


ncbi_organism_name: bacterium


ncbi_organism_name: Pseudomonadota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Polaribacter sp.


ncbi_organism_name: Bacteroides uniformis


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: uncultured Wolbachia sp.


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Yersinia pestis 5

ncbi_submitter: Beijing Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 5


ncbi_country: India: Agartala

ncbi_isolation_source: Sputum of tuberculosis patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Centre for Genetic Engineering and Biotechnology


ncbi_country: Italy: Mondovi

ncbi_submitter: University of Genoa


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water spring sample 20 PSU in greater than .8 micron size fraction

ncbi_organism_name: Chitinophagia bacterium

ncbi_submitter: Clemson University


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: Perirectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: USA: Pacific Norwthwest

ncbi_organism_name: Corynebacterium jeikeium

ncbi_submitter: University of Washington


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3155-1

ncbi_submitter: Broad Institute


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kueneniibacteriota;s__Candidatus Kuenenbacteria bacterium HGW-Kuenenbacteria-1


ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-418-G18

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Micromonospora sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huadong Hospital Affiliated to Fudan University


ncbi_isolation_source: turkey

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Spain: Madrid

ncbi_organism_name: Escherichia coli

ncbi_submitter: IRYCIS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: USA: Rhode Island; South Kingstown

ncbi_isolation_source: renal sac of host

ncbi_organism_name: Bordetella sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Melioribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: Water column of Rimov Reservoir; Czechia

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: Biology Centre CAS, Institute of Hydrobiology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_isolation_source: avian heart (Gallus gallus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Urine

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Bremerella cremea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: SWAB FROM ENVIRONMENTAL GROUND

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna-i.z.s.l.e.r.


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Loc090907-6m_bin-379

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Iceland: Geysir geothermal area

ncbi_isolation_source: environmental

ncbi_organism_name: Thermus brockianus

ncbi_submitter: Hamburg University of Technology


ncbi_organism_name: Fusobacterium perfoetens ATCC 29250

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Parvimonas sp.

ncbi_submitter: AAFC


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Fictibacillus sp. UD

ncbi_strain_identifiers: UD

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Paenibacillus sp. JCM 10914

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;x__unclassified Paenibacillus;s__Paenibacillus sp. JCM 10914


ncbi_assembly_name: assembly Coobra isolate 7

ncbi_isolation_source: Alpha-amylase enzym 4g (Coobra)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Sciensano


ncbi_country: Mexico

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae CP1037(10)

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Acetobacter pasteurianus NBRC 3277

ncbi_strain_identifiers: NBRC 3277

ncbi_submitter: Yamaguchi University


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Sutton Bonington

ncbi_isolation_source: cattle slurry

ncbi_organism_name: Venatoribacter cucullus

ncbi_submitter: University of Nottingham


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Escherichia coli


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_submitter: FDA/CFSAN


ncbi_country: South Korea: Wanju

ncbi_isolation_source: Lettuce

ncbi_organism_name: Erwinia sp. V90_4

ncbi_submitter: Max Rubner-Institut


ncbi_country: Poland: Warsaw

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institiute


ncbi_country: Brazil: Mato Grosso do Sul

ncbi_isolation_source: chicken carcass

ncbi_submitter: University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Corynebacterium diphtheriae


ncbi_country: Netherlands: Utrecht

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: TU Delft


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Leeuwenhoekiella sp. UBA6783

ncbi_submitter: University of Queensland


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_submitter: UNIFESP


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Holdemanella biformis

ncbi_submitter: Washington University School of Medicine


ncbi_country: Spain

ncbi_isolation_source: stem

ncbi_organism_name: Streptomyces sp. FIT100

ncbi_submitter: Center for Research in Agricultural Genomics (CRAG)


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Chung-Ang university


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pontiella sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Bacillus cereus group sp. BceL159

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL159


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: non-rhizosphere bulk soil near Avena fatua middle density fraction time point 6 weeks

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolate: SPRUCE 158

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 158

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: EMG


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 40cm depth; 6 days after first rain event (27mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium 13_1_40CM_3_69_14


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Fusobacteriaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: lactic starter (for yoghurt making)

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 1057

ncbi_submitter: Brigham Young University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: USA: St. Paul; Minnesota

ncbi_isolation_source: Plastic debris in land/lake environment

ncbi_organism_name: Gordonia sp. PDNC005

ncbi_submitter: University of Minnesota

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. PDNC005


ncbi_country: South Korea

ncbi_isolate: rhisosphere

ncbi_isolation_source: environmental

ncbi_organism_name: Paenibacillus sp. DCT19

ncbi_submitter: Jeju National University


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Health Research Institutes


ncbi_assembly_name: Rumen uncultured genome RUG14784

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B286;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__environmental samples;s__uncultured Poribacteria bacterium


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Cereibacter azotoformans

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Myroides odoratimimus CCUG 3837

ncbi_strain_identifiers: CCUG 3837

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Myroides;s__Myroides odoratimimus;x__Myroides odoratimimus CCUG 3837


ncbi_organism_name: uncultured Jatrophihabitans sp.

ncbi_submitter: Spribille Lab


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFCSPHIGHO2_02_FULL_47_44


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: Antarctica

ncbi_isolation_source: microbial mat ULC041

ncbi_organism_name: Shackletoniella antarctica

ncbi_submitter: ULg


ncbi_country: China: Anhui

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_country: Germany

ncbi_isolation_source: lung

ncbi_organism_name: Erysipelothrix aquatica

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Antarctica: Mackay Glacier regions; Towle Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Monash University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Treponema sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Spain: Asturias

ncbi_organism_name: Enterococcaceae bacterium

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Singapore

ncbi_isolation_source: 30 sequencing batch reactor activited sludge day 215

ncbi_organism_name: Defluviicoccus sp.

ncbi_submitter: Activated sludge


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemella sanguinis

ncbi_submitter: EMG


ncbi_country: South Korea: Jinju

ncbi_isolation_source: Closed pus

ncbi_organism_name: Dermabacter jinjuensis

ncbi_submitter: Korea Centers for Disease Control and Prevention


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolate: mouse isolate

ncbi_strain_identifiers: mouse isolate

ncbi_submitter: Frontier Science Research Center, University of Miyazaki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__unclassified Candidatus Neoarthromitus;s__Candidatus Arthromitus sp. SFB-mouse;x__Candidatus Arthromitus sp. SFB-mouse-Japan


ncbi_country: USA: WA

ncbi_isolation_source: pericardial sac

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: France

ncbi_isolation_source: reactal swab

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: gut content

ncbi_organism_name: Streptococcus thoraltensis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Kerfeldbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;x__unclassified Candidatus Kerfeldbacteria;s__Candidatus Kerfeldbacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Marinilabiliales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Marinilabiliales;x__environmental samples;s__uncultured Marinilabiliales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_assembly_name: IMG-taxon 2619618819 annotated assembly

ncbi_organism_name: Qipengyuania nanhaisediminis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: University of Chicago


ncbi_country: China

ncbi_organism_name: Bacillus infantis

ncbi_submitter: China Agricultural University


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Streptomyces pseudovenezuelae

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Minisyncoccales bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;s__Minisyncoccales bacterium


ncbi_organism_name: Erysipelothrix aquatica

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: CAU


ncbi_assembly_name: Rumen uncultured genome RUG12840

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Africa

ncbi_isolation_source: water from pond on golf course

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Bard College


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_country: China: Xisha

ncbi_organism_name: Geodermatophilus sp. LHW52908

ncbi_submitter: Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Helmholtz Centre for Infection Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: USA: FL

ncbi_isolation_source: fecal beef calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Raoultella sp. BIGb0149

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Microlunatus capsulatus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: University of Waterloo


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_submitter: Universite de Limoges


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_organism_name: Desulfovibrionales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Bartonella sp. AP280QHHD

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Brevundimonas sp. TWP3-1-2b1

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Crocinitomix sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bradyrhizobium sp. GCM10028915

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sofia University St. Kliment Ohridski


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Paraburkholderia solisilvae

ncbi_strain_identifiers: NCAIM B.02539


ncbi_organism_name: Dialister invisus

ncbi_submitter: EMG


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: uncultured Pantoea sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_assembly_name: Rumen uncultured genome RUG14671

ncbi_organism_name: Sharpea azabuensis

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1220

ncbi_submitter: Broad Institute


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA

ncbi_organism_name: Escherichia coli 900105 (10e)

ncbi_submitter: E. coli Reference Center


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Queensland


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Canada

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universite Laval


ncbi_isolate: RZPNF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: Instituto de Biotecnologia


ncbi_country: Sweden: Orebro

ncbi_isolation_source: cornea

ncbi_organism_name: Corynebacterium macginleyi

ncbi_submitter: Aarhus University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Promicromonosporaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Bangladesh: Rajshahi

ncbi_isolation_source: Blattella germanica

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Regina


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: starter bakery

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CIRM-BIA 2224

ncbi_submitter: Brigham Young University


ncbi_country: USA: Missouri

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_country: USA: Texas

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Rutgers University


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: legume-root nodule

ncbi_organism_name: Rhizobium sp. N731

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_country: USA: Ney s Spring; Mt. Shasta; CA

ncbi_isolation_source: Alkaline Spring

ncbi_organism_name: Thiomicrospira sp. R3

ncbi_submitter: University of Cincinnati


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Kuwait

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kuwait University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Alsobacter soli


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Lund University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Neisseria polysaccharea ATCC 43768

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_isolation_source: Mucosal surface Ileum

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: UNC-Chapel Hill


ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: ADPVA

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_organism_name: Vibrio ruber

ncbi_submitter: Honam National Institute of Biological Resources


ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_submitter: Icahn School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Curtobacterium sp. PhB137

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mycoplasmopsis bovis Hubei-1

ncbi_submitter: Harbin Veterinary Research Institute


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cyanobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Treponema porcinum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Canoe Beach; Nahant; MA

ncbi_organism_name: Oceanobacillus profundus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: China: Zhejiang Province

ncbi_isolation_source: bronchial alveolar lavage fluid

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_strain_identifiers: Dongyang

ncbi_submitter: Affiliated Dongyang hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Stockholm University


ncbi_country: Portugal

ncbi_isolation_source: food

ncbi_organism_name: Acetobacter oeni

ncbi_submitter: Ghent University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Ohio

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas sp. C1C7

ncbi_submitter: The Ohio State University


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_country: USA: Chicago

ncbi_isolation_source: colonic obstruction

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chicago


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_submitter: Yangzhou University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: France

ncbi_isolation_source: bacterial strain isolated from fresh salmon

ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: Ifremer


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: University of Western Australia


ncbi_isolation_source: human gut

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1534

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Spirochaetia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;x__unclassified Candidatus Polarisedimenticolia;s__Candidatus Polarisedimenticolia bacterium


ncbi_organism_name: Escherichia coli O26

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Geneva University Hospitals


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_assembly_name: Rumen uncultured genome RUG13980

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Eubacterium sp.


ncbi_isolation_source: Soil in tiger area of zoo

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: microbial pathogenic ecology group


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Salmonella sp. SAL00540

ncbi_submitter: Zhejiang university


ncbi_organism_name: Streptomyces luteogriseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Rhizorhabdus sp. FW153

ncbi_submitter: University of Manitoba


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Abuja


ncbi_organism_name: Bacillus cereus group sp. BCN147

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BCN147


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: China: Shenzhen Bay

ncbi_isolation_source: river sediment

ncbi_organism_name: Arenimonas sp. GDDSR-1

ncbi_submitter: Chongqing Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal: garden

ncbi_organism_name: Streptomyces sp. NBC_00160

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: Isolate 21

ncbi_submitter: Kalmar county hospital


ncbi_country: China: Fuzhou

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Roseburia sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Shanghai

ncbi_submitter: School of Agriculture and Biology, Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Coprobacillus sp. CAG:826

ncbi_submitter: DTU


ncbi_organism_name: Levilactobacillus parabrevis

ncbi_submitter: Shanghai Majorbio


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Desulfobulbus sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus LCT-SA112


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sinobacteraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Arthrobacter pascens

ncbi_submitter: Indigo Agriculture


ncbi_country: Australia: Queensland

ncbi_isolation_source: Layer chicken liver; farm

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Medical University Graz


ncbi_country: USA: MN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter sp. 225588

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 225588


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Veillonella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 28

ncbi_submitter: Lebanese American University


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA7647

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA7647


ncbi_country: Uganda

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. UG43


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Hungary

ncbi_isolation_source: phallus lymph

ncbi_organism_name: Mycoplasma anserisalpingitidis

ncbi_submitter: Institute for Veterinary Medical Research


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01425

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01425


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_assembly_name: Rumen uncultured genome RUG12423

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_organism_name: Pseudomonas capeferrum

ncbi_submitter: University of Coimbra


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Alphaproteobacteria bacterium 65-37

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Campylobacter jejuni


ncbi_country: China: Weihai

ncbi_isolation_source: sediment

ncbi_organism_name: Maribellus luteus

ncbi_submitter: shandong university


ncbi_country: USA: Athens County; Ohio

ncbi_isolation_source: groundwater well

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium Athens0714_16


ncbi_country: China: Ningxia

ncbi_isolation_source: pig fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_organism_name: Collimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: SAHMRI


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Marinilabiliales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii TG22112

ncbi_submitter: Translational Genomics Research Institute


ncbi_assembly_name: freshwater MAG --- Loc081215-9m_bin-0787

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycoplasma sp. Z631

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- E-2_bin-065

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylococcaceae bacterium


ncbi_country: USA: Florida

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rectal swab

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: abomasal content

ncbi_organism_name: Clostridium botulinum C/D str. It1

ncbi_submitter: National Veterinary Institute (SVA)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum C/D str. It1


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Candidatus Proximibacter danicus

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Proximibacter;s__Candidatus Proximibacter danicus


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Spongiibacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology


ncbi_country: USA: Oklahoma; Sallisaw; Sallisaw Creek Public Use Area; Robert S. Kerr Reservoir

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Arkansas


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp P-3b

ncbi_strain_identifiers: Hp P-3b

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Laos

ncbi_isolation_source: chicken meat

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: skin swab

ncbi_organism_name: Corynebacterium simulans

ncbi_submitter: NHGRI


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Muenster


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Salmonella sp. NW995

ncbi_submitter: Sichuan University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_organism_name: Micromonospora sp. DT231

ncbi_submitter: University of Liege


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Turkey

ncbi_isolation_source: Dicentrarchus labrax

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: Universidade de Santiago de Compostela


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Streptomyces sp. NPDC058383

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Sichuan

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Levilactobacillus parabrevis ATCC 53295

ncbi_strain_identifiers: RODS-DW

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: University of Chicago


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Cycloclasticus sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Singulisphaera sp. GP187

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Sinimarinibacterium flocculans

ncbi_submitter: Tang lab


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Stickney; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pontibacter sp. HSC-36F09


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Serratia sp. CY44083

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY44083


ncbi_country: Thailand

ncbi_isolation_source: Hospitalized patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The University of Western Australia


ncbi_isolate: SPRUCE 512

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 512

ncbi_submitter: Georgia Institute of Technology


ncbi_country: France

ncbi_isolation_source: wheat sourdough

ncbi_organism_name: Weissella cibaria

ncbi_strain_identifiers: LBAE K39

ncbi_submitter: Brigham Young University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Desulfobulbaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Nocardia fusca NBRC 14340

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Nocardia;s__Nocardia fusca;x__Nocardia fusca NBRC 14340


ncbi_country: China: Guangzhou

ncbi_submitter: China Aricultural University


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Mucilaginibacter flavidus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Spain

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus C3965

ncbi_submitter: Broad Institute


ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Brazil: Recife

ncbi_isolation_source: catheter tip

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter huaxiensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL


ncbi_country: Italy

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: ICGEB


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: JLU


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_organism_name: Roseomonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_assembly_name: Rumen uncultured genome RUG12402

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Treponema berlinense

ncbi_submitter: AAFC


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China: Guizhou; Hongfeng Lake

ncbi_isolation_source: lake water

ncbi_organism_name: Sphingopyxis sp. C-1

ncbi_submitter: Akita Prefectural University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: total DNA from caruncle light organ

ncbi_organism_name: Candidatus Enterovibrio escicola

ncbi_submitter: DEEPEND Consortium


ncbi_country: South Korea: Songwon-ri

ncbi_isolation_source: soil

ncbi_organism_name: Paraburkholderia sejongensis

ncbi_submitter: Chungnam National University


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1024

ncbi_submitter: Broad Institute


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Inverness


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Colousia faecequi

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Candidatus Colousia;s__Candidatus Colousia faecequi


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B20(2017)

ncbi_submitter: University of Sao Paulo


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_country: Kenya: Nairobi

ncbi_isolation_source: Vaginal discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Indo-Africa dengue sequencing, vaccine development and capacity building


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Candidatus Eutrophocola salsuginis

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-098


ncbi_isolation_source: Poultry faeces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG14028

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Segatella hominis


ncbi_submitter: Spribille Lab


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptosporangium canum


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 275

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Aquificaceae bacterium


ncbi_organism_name: Luteimonas sp. SDU82

ncbi_submitter: Shandong University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Erysipelotrichia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Dorea amylophila

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Actinomadura madurae

ncbi_submitter: college of bioengineering


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Korea

ncbi_organism_name: Serratia fonticola

ncbi_submitter: Shin's Lab., Kyungpook National University


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_country: Denmark: Copenhagen; Christiania; directly beneath a large pot plant

ncbi_organism_name: Streptomyces antibioticus


ncbi_isolation_source: Dog

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: FRIEDRICH-LOEFFLER-INSTITUT (FLI) Institute for Bacterial Infections and Zoonoses (IBIZ)


ncbi_organism_name: Citrobacter sp. RHBSTW-00859

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: US Food and Drug Administration


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_country: Malaysia: KL

ncbi_isolation_source: gastric biopsy tissue

ncbi_organism_name: Helicobacter pylori UM077

ncbi_submitter: UM-UNSW-MGRC


ncbi_country: Hungary: Budapest

ncbi_isolation_source: nose

ncbi_submitter: Semmelweis University


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG11837

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Ningbo

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: College of Resource and Environmental Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Korea: Seonyu island

ncbi_organism_name: Nocardioides euryhalodurans

ncbi_submitter: Chungnam National University


ncbi_country: Ireland

ncbi_organism_name: Pseudoflavonifractor sp. MCC625

ncbi_submitter: University College Cork


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Veillonella sp. 3_1_44

ncbi_submitter: Broad Institute


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Chlorobiota bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__environmental samples;s__uncultured Chlorobiota bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1570


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: human skin

ncbi_organism_name: Janibacter hoylei

ncbi_submitter: NHGRI/NIH


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Denver; CO

ncbi_submitter: University of Colorado


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Nizhny Novgorod

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F54452


ncbi_country: India: Odisha; Chilika Lake; Kalupadaghat

ncbi_isolation_source: rhizospheric region of Phragmites karka from brackish water lake

ncbi_organism_name: Acinetobacter sp. BMW17

ncbi_submitter: KIIT School of Biotechnology, KIIT University


ncbi_country: China: Guangzhou

ncbi_isolation_source: Physical

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus anginosus SK1138

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus anginosus;x__Streptococcus anginosus SK1138


ncbi_country: Brazil: Amazonas State; Brazilian Amazon

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium sp. UFLA03-84

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus intermedius B196

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus intermedius;x__Streptococcus intermedius B196


ncbi_country: Baltic Sea

ncbi_isolate: BACL1 MAG-120828-bin5

ncbi_isolation_source: surface water; brackish water collected from the surface of the Baltic Sea

ncbi_strain_identifiers: BACL1 MAG-120828-bin5

ncbi_submitter: Kungliga Tekniska Hogskolan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium BACL1 MAG-120828-bin5


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Burkholderia  cenocepacia BCC0090

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_submitter: University of British Columbia


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_country: South Africa: Rietvlei

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0046

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: food processing facility

ncbi_organism_name: Microbacteriaceae bacterium PS02341

ncbi_submitter: Penn State University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter nosocomialis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_organism_name: Streptomyces nojiriensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: ID

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Paraburkholderia tropica


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NNSp 2837

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: China: Shandong

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter devanensis

ncbi_submitter: University of Aberdeen


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: free-living microorganism and particle-associated microorganism hadal water (10;400-10;500 m)

ncbi_organism_name: Thalassolituus maritimus

ncbi_submitter: Ocean University of China


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-723

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HANYANG UNIVERSITY


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Propionicimonas sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: China: Sichuan Province; Yibin City; Junlian County

ncbi_organism_name: Rhizobium sp. S96

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: USA:Florida; Long Key

ncbi_organism_name: Solwaraspora sp. WMMA2080

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: Chile: Rio Negro

ncbi_isolation_source: Cankerous wood

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: INIA Rayentue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: China: Zhejiang

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Municipal Hospital Affiliated to Taizhou University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Ohio

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Italy: Pavia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pavia


ncbi_country: South Korea

ncbi_isolation_source: Porcine feces

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Seoul National University


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Pseudomonas lurida

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Abuja


ncbi_isolation_source: surface swab

ncbi_organism_name: Mitsuaria sp. GD03876

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_assembly_name: freshwater MAG --- Loc080925-6m_bin-0522

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-0887

ncbi_organism_name: uncultured beta proteobacterium


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: uncultured Beijerinckiaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Microbulbifer taiwanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Vreelandella titanicae

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Thalassospira povalilytica

ncbi_submitter: Tsinghua University


ncbi_organism_name: Peptoniphilus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gordonia sp. PS3

ncbi_submitter: Jiangxi Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. PS3


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Uppsala University


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Michigan State University


ncbi_organism_name: Aeromonas sp. 61P

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Primorskyibacter sp. S187A

ncbi_submitter: Shenzhen University


ncbi_organism_name: uncultured Rhodobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research