ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA

ncbi_genome_representation: full

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing macro&micro-test Bio-Tech Co.Ltd


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Tennessee


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_country: Netherlands: Utrecht Hospital

ncbi_isolation_source: organic material

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UMC Utrecht


ncbi_country: Norway

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria innocua

ncbi_submitter: Nofima


ncbi_country: Australia

ncbi_isolation_source: chicken rince

ncbi_submitter: CSIRO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Thalassotalea sp.

ncbi_submitter: SCOPE


ncbi_organism_name: uncultured Legionellales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella sp. C3209

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: Madison; WI

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Germany: Neckar river

ncbi_isolation_source: preen glands

ncbi_organism_name: Corynebacterium heidelbergense

ncbi_refseq_category: reference genome

ncbi_submitter: Bielefeld University

ncbi_type_material_designation: assembly from type material


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Israel: Tel Aviv

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellophilus tesquorum

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_isolation_source: traditional naturally fermented yak yogurt

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Ireland

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_country: Belgium

ncbi_isolation_source: pear

ncbi_organism_name: Gluconobacter albidus

ncbi_submitter: university of Ghent


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii 339786

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: IZSLER


ncbi_organism_name: Cyanobacteria bacterium J06588_4

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06588_4


ncbi_isolation_source: fresh water; California

ncbi_organism_name: Kamptonema formosum PCC 6407

ncbi_submitter: JGI


ncbi_country: Spain: Seville

ncbi_isolation_source: Blood culture

ncbi_submitter: Institute of Biomedicine of Seville (IBiS)


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: Leptotrichia hongkongensis

ncbi_submitter: Hebei North University


ncbi_country: USA: Texas

ncbi_isolation_source: Ground beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_organism_name: Enterococcus sp. DIV0673

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella sp. NW288

ncbi_submitter: Sichuan University


ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_submitter: Quadram Institute Bioscience


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Firmicutes bacterium ADurb.Bin300

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium ADurb.Bin300


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Caulobacter sp.

ncbi_submitter: UNESP-FCAV


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: SAHMRI


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 12-15 cm

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: INTA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: United Kingdom

ncbi_isolation_source: soil

ncbi_organism_name: Corallococcus sp. CA049B

ncbi_submitter: Aberystwyth University


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Candidatus Avelusimicrobium fimicolum

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Helicobacter sp. UBA3407


ncbi_country: Germany

ncbi_isolation_source: Kiel Fjord

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_assembly_name: freshwater MAG --- I3b_bin-088

ncbi_organism_name: uncultured Rhodopila sp.

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_isolation_source: stool of a patient presenting with scarlet-like fever in the Primorski region of the former USSR; in 1971 sent to the Institut Pasteur (Paris; France) by Dr. Timofeeva (Antiplague Institute; Irkoutsk)

ncbi_organism_name: Yersinia pseudotuberculosis IP 31758

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pseudotuberculosis;x__Yersinia pseudotuberculosis IP 31758


ncbi_country: Russia: Republic of Tatarstan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Waterloo


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Halobacteriovoraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: food processing facility

ncbi_organism_name: Microbacteriaceae bacterium PS02067

ncbi_submitter: Penn State University


ncbi_country: USA: Metamora; IL

ncbi_isolation_source: Rural backyard soil

ncbi_organism_name: Pseudomonas sp. LM20

ncbi_submitter: Illinois Wesleyan University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotellaceae bacterium


ncbi_country: United Kingdom: Great Monk Wood

ncbi_isolation_source: Larval galleries created by Agrilus biguttatus

ncbi_organism_name: Phytopseudomonas dryadis

ncbi_submitter: University of the West of England


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5400

ncbi_submitter: University of Queensland


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Mycolicibacterium mucogenicum

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA2696


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Harvard University


ncbi_country: France

ncbi_isolation_source: flower

ncbi_organism_name: Microbacterium sp. CFBP 8801

ncbi_submitter: INRAE


ncbi_country: China: Jiangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Nankai Universigy


ncbi_organism_name: Streptomyces mutabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Fusobacterium mortiferum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Companilactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Fretibacterium sp.


ncbi_country: New Zealand: Laboratory C4.21 of Science Towers; Palmerston North Massey University Campus

ncbi_isolation_source: de Man; Rogosa & Sharpe laboratory culture

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: ATCC 8014

ncbi_submitter: Massey University


ncbi_country: Germany: Berlin

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Cologne


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Slovenia

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_assembly_level: Chromosome

ncbi_country: USA: VA

ncbi_isolation_source: inflamed biopsy tissue from cecum

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Spain

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Germany: Arnsberg; North Rhine-Westphalia

ncbi_isolation_source: spleen tissue from parrot (Polytelis)

ncbi_organism_name: Chlamydia avium 10DC88

ncbi_submitter: Friedrich-Loeffler-Institut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia avium;x__Chlamydia avium 10DC88


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_country: China: Zhejiang

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: USA:California; Northridge

ncbi_organism_name: Akkermansia muciniphila

ncbi_strain_identifiers: CSUN-37 AmIV

ncbi_submitter: California State University, Northridge


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_country: United Kingdom: Leeds

ncbi_isolation_source: Endotracheal secretion

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Cardiff University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14660

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Micromonospora sp. BRA006-A

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. SA-1


ncbi_organism_name: Thauera aminoaromatica

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2654588209 annotated assembly

ncbi_organism_name: Streptococcus equinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: USA

ncbi_isolation_source: Air filter

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Hangzhou

ncbi_isolation_source: anal swab

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R559;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Paenibacillus sp. RC58A

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Atlantibacter sp.


ncbi_country: Germany

ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Munster


ncbi_country: Turkey: Malatya

ncbi_isolation_source: soil

ncbi_organism_name: Actinomadura rubrisoli

ncbi_submitter: Ondokuz Mayis University


ncbi_country: USA: Alameda County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Main Ward

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Tissierellaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Gemella sanguinis


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Toho University


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Chloroflexales bacterium

ncbi_submitter: East China Normal University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Korean adult feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Korea Food Research Institute


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Acinetobacter pittii


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0708

ncbi_submitter: Broad Institute


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium GW2011_GWF2_38_1205


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Pararhodobacter sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmobacter lanyuensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Dyadobacter sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Finegoldia magna


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas syringae pv. tagetis

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 7;x__Pseudomonas syringae pv. tagetis


ncbi_organism_name: Acinetobacter sp. G11

ncbi_submitter: Beijing University Of Technology


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces hygroscopicus

ncbi_submitter: Beijing Normal University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Streptomyces sp. NPDC002120

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Aporus unicolor


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Bielefeld University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: The Institute of Medicinal Plant Development

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: environmental

ncbi_organism_name: Halomonas sp. 328

ncbi_submitter: IMCAS


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: unknown

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France

ncbi_organism_name: Pantoea conspicua

ncbi_submitter: University of Pretoria


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: UC Davis


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Shanghai

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China: Zhejiang

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The First Affiliated Hospital of Medical College, Zhejiang University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Salmonella enterica


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Sphingobacteriaceae bacterium UBA2059

ncbi_submitter: University of Queensland


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 2; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Los Angeles

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: UCLA Clinical Microbiology Laboratory


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Kluyvera ascorbata

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Alachua; FL

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: China: Guangzhou

ncbi_isolation_source: river water

ncbi_organism_name: Legionella sp. km772

ncbi_submitter: kingMed Center for Clinical Laborary


ncbi_organism_name: Photorhabdus stackebrandtii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Germany

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_country: Denmark

ncbi_isolation_source: rapid sand filter

ncbi_organism_name: Nitrospira sp. CG24B

ncbi_submitter: Technical University of Denmark


ncbi_country: Italy: Florence

ncbi_isolation_source: bronchoaspiration material

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: USA

ncbi_isolation_source: nephrostomy L

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Bulgaria

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Mycobacteroides salmoniphilum

ncbi_submitter: Uppsala University


ncbi_country: Guinea-Bissau

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: US Food and Drug Administration


ncbi_submitter: Institute of Experimental Medicine


ncbi_country: Australia

ncbi_isolation_source: Environmental Meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: CSIRO


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Guinea

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhiduo County; Yushu City; Qinghai

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: XiZang agriculture and Animal Husbandry College


ncbi_country: France: Besancon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: Quadram Institutte


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: addis ababa university


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Bangladesh

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Kosakonia sp. WA-90

ncbi_submitter: huazhong agricultural university


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Planktotalea sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile F200

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Corynebacterium bovis

ncbi_strain_identifiers: 2305220054 (output strain)

ncbi_submitter: MIT


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: New Zealand: Palmerston North

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Eubacterium limosum

ncbi_submitter: AgResearch, Grasslands Research Institute


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: University of Parma


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus F45749

ncbi_submitter: Broad Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: India

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. AKBS9

ncbi_submitter: National Environmental Engineering Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AKBS9


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Spongiibacter tropicus

ncbi_submitter: University of Queensland


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_organism_name: Roseivivax isoporae LMG 25204

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Salmonella sp. NW955

ncbi_submitter: Sichuan University


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Frankiaceae bacterium


ncbi_organism_name: uncultured bacterium


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolate: AOP13_A1_surf _bin _7

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: AOP13_A1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- KR1_bin-1050

ncbi_submitter: BILS


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_assembly_name: Rumen uncultured genome RUG10141

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Switzerland: Basel

ncbi_isolation_source: clinical sample

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Finland: Hameenlinna (Evo); Lake Alinen-Mustajarvi

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Streptomyces sp. NRRL WC-3703

ncbi_strain_identifiers: NRRL WC-3703

ncbi_submitter: University of Illinois


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sanguinis SK150

ncbi_submitter: Baylor College of Medicine


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_submitter: Makerere University


ncbi_submitter: University of Oslo


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Sporosarcina sp. JAI121

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: Kenya

ncbi_isolation_source: human stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: Morocco: Ras el Ma

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium retamae

ncbi_submitter: UPM


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Japan

ncbi_genome_category: derived from single cell

ncbi_isolation_source: 3 single-cells amplified by MDA; face skin

ncbi_organism_name: Shigella flexneri

ncbi_submitter: bioBiome, Inc.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Detroit

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Norway

ncbi_isolation_source: jaw

ncbi_organism_name: Tenacibaculum maritimum

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Segatella mututuai

ncbi_submitter: University of Queensland


ncbi_organism_name: Phocaeicola sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Mississippi State University; College of Veterinary Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. dysgalactiae


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Oregon State University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Brigham Young University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: Lund University


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Fudan University


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Chicago


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA28

ncbi_submitter: Broad Institute


ncbi_country: Malaysia: Selangor

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_organism_name: Empedobacter sp.


ncbi_country: Brazil: Recife

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_strain_identifiers: Pol 16

ncbi_submitter: Microbial Resistance Group


ncbi_organism_name: Aeromicrobium sp. CF3.5

ncbi_submitter: University of Copenhagen


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG10769

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-PR

ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Haiti

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-37A1

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Christensenellales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Pseudomonas sp. 9.2(2024)

ncbi_submitter: Willamette University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: The University of Texas at San Antonio


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_assembly_name: Salmonella enterica CVM N32051-SQ v1.0

ncbi_country: USA: NY

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_country: Germany: Zoo Saarbruecken

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: EMG


ncbi_country: USA: Minnesota

ncbi_isolation_source: Freshwater Pond

ncbi_organism_name: Cellvibrio mixtus

ncbi_submitter: University of Minnesota


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China agricultural university


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_isolation_source: lake water

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptococcus pyogenes ABC020052211

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Salmonella sp. NW1023

ncbi_submitter: Sichuan University


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_submitter: University Hospital Basel


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 468

ncbi_submitter: Ghent University


ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Gordonibacter sp.


ncbi_organism_name: uncultured Granulosicoccus sp.

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy:Voltri Massif; Liguria

ncbi_isolation_source: Voltri Massif travertine

ncbi_organism_name: Proteobacteria bacterium UBA664

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA664


ncbi_organism_name: Cupriavidus gilardii

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Butyricicoccus sp. OM04-18BH

ncbi_submitter: BGI


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Curvibacter sp. AEP1-3

ncbi_submitter: Biology Centre CAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Gluconobacter cerinus

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: Spain

ncbi_isolation_source: laboratory

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Chr. Hansen


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Arkansas

ncbi_isolation_source: wildtype obtained from ARisolateBank from CDC

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Campylobacter sp. TJR-1

ncbi_submitter: Mianyang Hospital of Traditional Chinese Medicine/Mianyang Hospital Affililiated to Chengdu Universi


ncbi_submitter: German Federation for Biological Data


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Alkek Center for Metagenomics and Microbiome Research


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Minnesota


ncbi_isolation_source: sputum of a patient with pulmonary disease

ncbi_organism_name: Mycobacterium intermedium

ncbi_submitter: Uppsala University


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Henriciella marina

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Ukraine

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: ARRIAM


ncbi_country: United Kingdom

ncbi_isolation_source: soil

ncbi_submitter: Aberystwyth University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Thailand: Chaiyaphum

ncbi_isolation_source: food

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Yoonia sp.

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Herbinix sp.

ncbi_submitter: Colorado State University


ncbi_country: China: Sichuan Province

ncbi_isolation_source: Large-scale pig farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: University of Galway


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0098

ncbi_submitter: Broad Institute


ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_organism_name: Corynebacterium casei

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: Germany

ncbi_isolation_source: culture

ncbi_submitter: Ares Genetics GmbH


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: OR

ncbi_organism_name: Rhodococcus sp. 06-221-2

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 06-221-2


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: Supragingival and interproximal dental plaque

ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Weihai; Shandong

ncbi_isolation_source: marine sediment from coastal area

ncbi_organism_name: Labilibacter marinus

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_assembly_name: KPB_3 IHQD

ncbi_country: USA: OH

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae Kb140

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolate: AOP36_B1_surf _bin _16

ncbi_organism_name: Agrococcus casei

ncbi_strain_identifiers: AOP36_B1_surf _bin _16

ncbi_submitter: Genoscope


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_submitter: University of Wisconsin - Madison


ncbi_assembly_name: Rumen uncultured genome RUG457

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Arthrobacter silviterrae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Faecalibaculum rodentium


ncbi_isolation_source: Environmental; soil

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 57

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Micrococcus yunnanensis

ncbi_submitter: Universidad Autonoma del Estado de Mexico


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Streptomyces bauhiniae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Prevotella denticola

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Klebsiella sp. PB3

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Sorangium sp. So ce834

ncbi_strain_identifiers: So ce834

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce834


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Synechococcus elongatus M14.2

ncbi_submitter: Purdue University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: Ondokuz Mayis University, Faculty of Veterinary Medicine


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_organism_name: uncultured Staphylococcaceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ120730A_bin-590

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Gambia: Basse Santa Su

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_assembly_name: freshwater MAG --- Loc090402-8-9m_bin-0353

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Bacteroides caccae ATCC 43185

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides caccae;x__Bacteroides caccae ATCC 43185


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University


ncbi_country: Thailand: Ubon Ratchathani

ncbi_isolation_source: UCC isolate

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: US Food and Drug Administration


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas gulae

ncbi_submitter: UC Davis


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Georgia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hunan

ncbi_organism_name: Enterobacter sp. A11

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_assembly_name: freshwater MAG --- Umea_bin-05235

ncbi_organism_name: uncultured bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Atopobiaceae bacterium AF16-15LB

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


gtdb_type_species_of_genus: t

ncbi_organism_name: Pyruvatibacter mobilis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_assembly_name: Rumen uncultured genome RUG14403

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_organism_name: Dryocola sp. LX212

ncbi_submitter: Shandong Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFOXYB12_FULL_58_10


ncbi_country: Germany

ncbi_organism_name: Ottowia thiooxydans DSM 14619

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Ghana: Nyankpala site 1

ncbi_isolation_source: Kantong

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 co-cultured with S. maltophilia 4 g/ml treated Synthetic Cystic Fibrosis Media for 24 days

ncbi_submitter: University of Warwick


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Australia

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Bacillus cereus group sp. BceL296

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL296


ncbi_country: USA: Pittsburgh

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Castellaniella caeni NBRC 101664

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Streptomyces sp. NPDC050095

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: China: Shanghai

ncbi_isolation_source: clinic

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Municipal ceter for disease control & prevention


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Verona

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium vespertilionis

ncbi_submitter: University of Bologna


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Russia: Republic of Dagestan

ncbi_isolation_source: Salad

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: New Hampshire; Town of Hanover

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. HMG

ncbi_strain_identifiers: HMG

ncbi_submitter: Colby Sawyer College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. HMG


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Third Institute of Oceanography


ncbi_organism_name: Acidithiobacillus thiooxidans

ncbi_strain_identifiers: ATCC 8085

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: United Kingdom: Tidworth; Wiltshire

ncbi_isolation_source: inner bark

ncbi_organism_name: Winslowiella arboricola

ncbi_strain_identifiers: Til 1

ncbi_submitter: University of the West of England


ncbi_assembly_name: Serratia fanticola AU-P3(3)

ncbi_organism_name: Serratia fonticola AU-P3(3)

ncbi_submitter: Institute of Microbial Technology


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Kiloniellales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: China: Lake Dianchi

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: China: Shenzhen; Guangdong

ncbi_organism_name: Bradyrhizobium jicamae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: South Korea

ncbi_organism_name: Bacteroides sp. CACC 737

ncbi_strain_identifiers: CACC 737

ncbi_submitter: Center for Industrialization of Agricultural and Livestock Microorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;x__unclassified Bacteroides;s__Bacteroides sp. CACC 737


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 154

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ewingella allii

ncbi_submitter: USDA Stop the rot


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Anaerocolumna sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: SC


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Leptospiraceae bacterium


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: Denmark

ncbi_strain_identifiers: Broiler parent72

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: ZHT-9 ZJW

ncbi_submitter: Chengdu Academy of Agricultural and Forestry Science


ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China:Pearl River

ncbi_organism_name: Falsiroseomonas ponticola

ncbi_strain_identifiers: SYSU M41301

ncbi_submitter: sun-yat sen university


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_strain_identifiers: Fecal samples


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: INS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Spirosomataceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ralstonia solanacearum Y45

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia solanacearum;x__Ralstonia solanacearum Y45


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: China Agricultural University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-8768

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Paenibacillus sp. FSL K6-1230

ncbi_submitter: Penn State


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Poland

ncbi_isolation_source: wound of lower leg

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institut Pasteur, Paris, France


ncbi_country: USA: MI

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Bordetella hinzii

ncbi_submitter: US Food and Drug Administration


ncbi_country: Pacific Ocean: western region near China

ncbi_isolation_source: marine sediment

ncbi_organism_name: Flammeovirga pacifica


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_isolation_source: forest soil

ncbi_organism_name: Streptomyces tsukubensis

ncbi_submitter: Shandong First Medical University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_organism_name: Campylobacter sp. LH-2024

ncbi_submitter: Luxembourg Institute of Science and Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Tissues

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: USA: Homeless Hotsprings; Utah

ncbi_strain_identifiers: FTG

ncbi_submitter: BioHealthBase

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. novicida;x__Francisella tularensis subsp. novicida FTG


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ICE 173

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_organism_name: Xanthomonas campestris pv. badrii

ncbi_submitter: NEB

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: Norway

ncbi_isolation_source: Snout ulcer

ncbi_organism_name: Tenacibaculum finnmarkense genomovar finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: USA: WI

ncbi_organism_name: Elizabethkingia ursingii

ncbi_submitter: CDC


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Nizhny Novgorod scientific and research institute of epidemiology and microbiology name acad.I.N. Bl


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Mycoplasmatales bacterium

ncbi_submitter: Spribille Lab


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Australia: Sydney; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_country: Finland

ncbi_isolation_source: mastitis

ncbi_submitter: KOlimastIR


ncbi_country: Ukraine: Kerch

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russia Research Anti-Plague Institute "Microbe"


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Copenhagen


ncbi_country: Brazil: Belo Horizonte;Pampulha lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M62BS1

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Bern


ncbi_submitter: Center for Microbial Communities


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium binae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_assembly_name: Rumen uncultured genome RUG13190

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: cecal contents

ncbi_organism_name: Clostridia bacterium


ncbi_country: South Korea

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: AtoGen Co., Ltd.


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: uncultured Hungatella sp.


ncbi_isolation_source: dental caries

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: CIRM-BIA 2128

ncbi_submitter: Brigham Young University


ncbi_country: New Zealand: Canterbury

ncbi_isolation_source: potato samples

ncbi_organism_name: Pectobacterium polaris

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd.


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Mexico: Cuernavaca Morelos

ncbi_organism_name: Rhizobium leguminosarum bv. trifolii

ncbi_submitter: Centro de Ciencias Genomicas, UNAM


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China

ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Natronospira sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Maine

ncbi_isolation_source: foregut

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Elanco Animal Health


ncbi_organism_name: Paenarthrobacter sp. SL

ncbi_strain_identifiers: SL

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HANYANG UNIVERSITY


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_organism_name: Mesorhizobium sp. LNJC386A00

ncbi_submitter: University of Southern California


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus sp.


ncbi_organism_name: Enterococcus faecium EnGen0376

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Southern Federal University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Finnish Food Authority


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_organism_name: Candidatus Electronema sp. PJ

ncbi_strain_identifiers: PJ

ncbi_submitter: Guangdong University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__Candidatus Electronema;x__unclassified Candidatus Electronema;s__Candidatus Electronema sp. PJ


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_submitter: EMG


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient sediment

ncbi_organism_name: Ruegeria sp. HKCCA5839

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured archaeon


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: Seto Island Sea

ncbi_organism_name: Sulfitobacter sp. M53


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Burkholderia oklahomensis C6786

ncbi_submitter: NMRC


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter baumannii SDF

ncbi_strain_identifiers: SDF

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Shigella sonnei 53G

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AM57-5

ncbi_submitter: BGI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Alkalimonas delamerensis

ncbi_submitter: National Centre For Cell Science (NCCS)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis T8

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The laboratory of genetics and plant breeding, The National institute of Agronomy of Tunis


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center