ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: groundwater

ncbi_organism_name: candidate division WWE3 bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium


ncbi_assembly_level: Contig

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


gtdb_representative: t

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020033193

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_assembly_level: Chromosome

ncbi_country: Mauritania

ncbi_organism_name: Borrelia crocidurae str. Achema

ncbi_strain_identifiers: Achema

ncbi_submitter: URMITE


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: Universidad Nacional del Altiplano Puno


ncbi_organism_name: Bombilactobacillus bombi

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_submitter: Federal University of Agriculture Abeokuta


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: EMG


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: University of Minnesota


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: China

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: China Agricultural University


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: Hospital Universitario Son de Espases (Palma de Mallorca)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_country: China: Qingdao

ncbi_isolation_source: seawater

ncbi_organism_name: Photobacterium obscurum

ncbi_refseq_category: reference genome

ncbi_submitter: ocean university of china


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Nitratifractor sp.

ncbi_submitter: Portland State University


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: McGill University


ncbi_country: Guinea-Bissau

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Spain

ncbi_isolation_source: water

ncbi_organism_name: Salinivibrio sp. PR5

ncbi_submitter: Universidad de Sevilla


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom:Somerset

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_country: France

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_country: China: The East China Sea

ncbi_isolation_source: surface seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Filomicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Turkey

ncbi_organism_name: Pseudoclavibacter sp. RFBA6

ncbi_submitter: Oregon State University


ncbi_submitter: University of Georgia


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPHIGHO2_02_FULL_40_29


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Brazil

ncbi_isolation_source: Agricultural field

ncbi_organism_name: Azospirillum brasilense

ncbi_strain_identifiers: Sp 7

ncbi_submitter: Banaras Hindu University


ncbi_country: India

ncbi_isolation_source: Respiratory catheter tip

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: sediment

ncbi_organism_name: Pseudarthrobacter defluvii

ncbi_submitter: Wuhan University


ncbi_country: USA: Detroit Medical Center

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Acinetobacter johnsonii


ncbi_country: Norway: Bergen

ncbi_isolation_source: brain abscess

ncbi_organism_name: Eikenella corrodens

ncbi_submitter: Haukeland University Hospital


ncbi_submitter: University of Copenhagen


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.514 MAG

ncbi_isolate: bin.514 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_strain_identifiers: bin.514 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indonesia: Bali

ncbi_isolation_source: soil

ncbi_organism_name: Amycolatopsis sp. 195334CR

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D9_bin-0634

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point A

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerae bacterium RIFOXYA12_FULL_48_11


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bordetella trematum

ncbi_submitter: SC


ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Texas

ncbi_organism_name: Microbacterium trichothecenolyticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital


ncbi_country: USA

ncbi_isolation_source: gut of larva

ncbi_organism_name: Spiroplasma clarkii

ncbi_submitter: Beltsville Agricultural Research Center


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: China: Hunan

ncbi_organism_name: Pseudomonas rhizoryzae

ncbi_submitter: Institute of Agricultural Resources and Regional Planning,CAAS


ncbi_country: China: Zhejiang

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli


ncbi_country: South Africa: Mafikeng; Mafikeng Provincial Hospital

ncbi_isolation_source: diarrhea sample from child under the age of five

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: North-west University


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Rhodothermaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: LNCC


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Heilongjiang province

ncbi_isolation_source: rhizosphere soil of rice

ncbi_organism_name: Pseudoxanthomonas sp. SGT-18

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Corynebacterium mustelae


ncbi_organism_name: Coxiella burnetii 'MSU Goat Q177'

ncbi_strain_identifiers: MSU Goat Q177

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;s__Coxiella burnetii;x__Coxiella burnetii 'MSU Goat Q177'


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Caldimicrobium sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Monash University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Singapore General Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Laval University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Zhongkai University of Agriculture and Engineering


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Miltoncostaeaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Francisellaceae bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Streptomyces sp. NPDC001373

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: metabat2_XCR1_HOM_7852_bwa.74 MAG

ncbi_organism_name: Candidatus Evtepia faecavium

ncbi_strain_identifiers: metabat2_XCR1_HOM_7852_bwa.74 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;s__Candidatus Evtepia faecavium


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: China: Xinjiang

ncbi_organism_name: Streptomyces murinus

ncbi_submitter: Henan University of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Kordiimonas sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Humaya River; Adolfo Lopez Mateos dam

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium sp. MSK310

ncbi_submitter: Duke University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Aestuariivita sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Cleveland Clinic


ncbi_country: USA: North Dakota

ncbi_isolation_source: potato tuber

ncbi_organism_name: Streptomyces caniscabiei

ncbi_submitter: USDA ARS


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pedobacter schmidteae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_isolation_source: sputum

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Ontario

ncbi_isolation_source: plant matter [ENVO:01001121]

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Streptomyces longwoodensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces klenkii


ncbi_country: India: Gujrat

ncbi_isolation_source: sludge

ncbi_organism_name: Arthrobacter sp. SW1

ncbi_submitter: Government Medical College


ncbi_organism_name: Methylophaga sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Rouyn-Noranda

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: USDA-ARS 2063

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Peru:Chota; San Juan de Licupis; Pay Pay

ncbi_organism_name: Yersinia pestis PY-07

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Rhodococcus aetherivorans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India

ncbi_isolation_source: Pepper plant

ncbi_submitter: CAU Kiel


ncbi_submitter: Makerere University


ncbi_country: Brazil

ncbi_organism_name: Stenotrophomonas maltophilia JV3

ncbi_submitter: JGI


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Thermonemataceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Roseburia hominis

ncbi_submitter: University of Chicago


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Citrobacter sedlakii

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: EMG


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia

ncbi_isolation_source: waterfall

ncbi_organism_name: Pantoea stewartii

ncbi_submitter: University of Malaya


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 102

ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: SNUC 196

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacillus cereus group sp. BceL188

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL188


ncbi_isolation_source: Choana

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Stenotrophomonas sp.


ncbi_isolation_source: Faeces


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Great Khingan

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pinirhizobacter soli

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Croatia: Zagorje

ncbi_isolation_source: Fresh smoked cheese

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: IGA Technology Services Srl


ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Denmark

ncbi_isolation_source: trachea

ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Burkholderia sp. H160

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_organism_name: Nitrospirae bacterium CG1_02_44_142

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium CG1_02_44_142


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. FSHCM14E1

ncbi_submitter: jiangnan


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Roseateles sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: human gut

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Victivallis sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lactobacillus ultunensis DSM 16047

ncbi_submitter: BCM


ncbi_organism_name: Pseudomonas sp. SED1

ncbi_submitter: Rutgers University-Camden


ncbi_isolation_source: soil

ncbi_organism_name: Azotobacter chroococcum

ncbi_submitter: Hunan Agricultural University


ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Neisseria sp. HMSC15G01

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Duncaniella muris


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0158R

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: White Oak Rive Estuary; North Carolina

ncbi_isolation_source: Sulfate-rich zone estuary sediments 8-12 cm

ncbi_organism_name: Parcubacteria bacterium SG8_24

ncbi_submitter: University of Texas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Parcubacteria;s__Parcubacteria bacterium SG8_24


ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimonas balearica

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: KS

ncbi_isolation_source: bovine liver abscess

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Japan

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_country: Malaysia: Kuala Lumpur; PPUM

ncbi_isolation_source: hospital wastewater

ncbi_organism_name: Staphylococcus sp. SNAZ 36

ncbi_strain_identifiers: SNAZ 36

ncbi_submitter: MJIIT


ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000700


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Dokdonia sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Dialister hominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Laboratory of Veterinary Bacteriology UFRGS


ncbi_organism_name: Bacillus sp. YIM B13558

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13558


ncbi_organism_name: Parabacteroides distasonis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Institut de Ciencies del Mar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10792

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Orrella sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Greece: Western Macedonia

ncbi_isolation_source: artisanal Greek Kefalograviera cheese

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_isolation_source: Distal colon

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: The University of Queensland


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Corynebacterium aurimucosum

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Limnohabitans sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: Bangladesh

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: marine ANAMMOX bioreactor

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: KAUST


ncbi_country: China: Baoji; Shaanxi

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium sp. BJ1

ncbi_submitter: Northwest A&F University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Switzerland

ncbi_isolation_source: cheese starter culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Agroscope


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: soil

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aurantiaca


ncbi_country: China: Beijing

ncbi_isolation_source: tissue

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Chinese People's Liberation Army Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_country: USA: PA

ncbi_isolation_source: bovine uterus (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_submitter: China Agricultural University


ncbi_organism_name: Burkholderia sp. E168m15

ncbi_submitter: Laboratory of Microbial Genetics, Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Streptomyces sp. NPDC056500

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactobacillus gasseri


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: INRA


ncbi_organism_name: uncultured Alteromonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China

ncbi_isolation_source: Out-of-house environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Microbacterium algeriense

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: Rumen uncultured genome RUG14304

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Zhejiang university


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada

ncbi_isolation_source: Pig feces

ncbi_organism_name: Enterococcus hirae 81-15-F4

ncbi_submitter: University of Saskatchewan


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Novilysobacter avium

ncbi_submitter: KyungHee University


ncbi_country: South Korea: Yong-in

ncbi_isolation_source: freshwater

ncbi_organism_name: Mucilaginibacter aquatilis

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Italy: Sicily

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: University of Galway


ncbi_submitter: Sichuan University


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Desulfotalea sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Nares

ncbi_submitter: South American MRSA Consortium


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA10

ncbi_submitter: Broad Institute


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: zhejiang University


ncbi_country: China: Wuyi Shan; Nanping city; Fujian Province

ncbi_isolation_source: soil

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Wuyi University


ncbi_country: Estonia


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_isolation_source: Caecum

ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Universidad de Zaragoza, Facultad de Veterinaria


ncbi_country: China

ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom:London

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: UPCC 1088

ncbi_submitter: University of the Philippines Diliman


ncbi_country: China: Beijing

ncbi_isolate: male patient

ncbi_isolation_source: medical patient

ncbi_strain_identifiers: male patient;XDR-BJ83

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Thailand: Surat Thani province

ncbi_organism_name: Streptomyces acidicola

ncbi_submitter: Kasetsart University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA4512

ncbi_submitter: University of Queensland


ncbi_organism_name: Komagataeibacter intermedius TF2

ncbi_submitter: Kinki University


ncbi_organism_name: Fusobacterium mortiferum

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: terrestrial

ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology, Sydney


ncbi_country: India

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_assembly_name: De novo assembly of isolate R0006_KLMC2

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon mucosa

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Animal Quarantine Service, MAFF

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Legionellales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Pyometra

ncbi_submitter: China Agricultural University


ncbi_organism_name: Rhodanobacter sp. K2T2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Rhizobium rhizoryzae


ncbi_isolation_source: forest soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Mageeibacillus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Universidade Federal Fluminense


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: California

ncbi_isolation_source: chicken

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: USDA


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Niveispirillum sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Zoogloea sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Aeromonas sanarellii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: uncultured Melioribacteraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-12545

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Klebsiella sp. 75322

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Zetaproteobacteria bacterium

ncbi_submitter: JAMSTEC


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_submitter: HOSPICES CIVILS DE LYON


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alphaproteobacteria bacterium UBA1925

ncbi_submitter: University of Queensland


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Klebsiella sp. 98919


ncbi_organism_name: Lachnospiraceae bacterium 38-10

ncbi_submitter: Nanjing University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: human gut

ncbi_organism_name: Firmicutes bacterium AF22-6AC

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF22-6AC


ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EBI


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_country: China: Shanghai City

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Phascolarctobacterium sp. CAG:266

ncbi_submitter: DTU


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Ochlodes sylvanus


ncbi_assembly_name: Rumen uncultured genome RUG10735

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG12122

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Parolsenella catena

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Switzerland

ncbi_isolation_source: powder infant formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Viet Nam:Hanoi

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Health, Institute of Tropical Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: control oxisol soil plot 5

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Arizona State University


ncbi_assembly_name: freshwater MAG --- MJ120516A_bin-113

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolate: Human

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Human

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_country: Spain: Malaga

ncbi_isolation_source: soil

ncbi_organism_name: Idiomarina fontislapidosi

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_country: China: Guangzhou

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Oregon State University


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile R20291

ncbi_submitter: Wellcome Trust Sanger Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_02_FULL_38_15


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1575710

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow ileum

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University Medicine Greifswald


ncbi_organism_name: Brachybacterium alimentarium

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: USA: Arizona

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Ascites liquid

ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: Kenya

ncbi_submitter: SC


ncbi_organism_name: Glaciimonas sp. Cout2

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Yulin

ncbi_organism_name: Pedobacter yulinensis

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Pseudomonas sp. RTS4


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Stomatobaculum sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Rhodanobacter sp. 67-28


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Tang lab


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: University of Toronto


ncbi_organism_name: Cypionkella sp.

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: United Kingdom: Crawley

ncbi_isolation_source: ear swab

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Cardiff University


ncbi_country: China: Weihai

ncbi_isolation_source: marine sediment

ncbi_organism_name: Marinicella rhabdoformis

ncbi_submitter: Shandong university


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Arsukibacterium sp.

ncbi_submitter: Academia Sinica


ncbi_country: USA

ncbi_isolation_source: Stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_country: Chile

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sphingomonas paucimobilis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Korea Research Institue of Bioscience a


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: University of Florida


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Sphingopyxis terrae

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: USA: Alachua

ncbi_isolation_source: feces


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: South Carolina

ncbi_organism_name: Enterococcus hulanensis

ncbi_submitter: Broad Institute


ncbi_country: South Korea: Seoul

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_country: USA: Storrs; Connecticut

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: sputum

ncbi_organism_name: Rothia sp. HMSC061D12

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC061D12


ncbi_country: India: Mahanadi River; Cuttack

ncbi_organism_name: Shewanella cutis

ncbi_submitter: Institute of Life Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: Tracheal secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_organism_name: Dialister invisus

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Anhui

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Cryptobacterium sp.

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC051956


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_submitter: Universidad de Cadiz


ncbi_organism_name: uncultured Desulfobulbus sp.


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Candidatus Brocadiia bacterium JP1

ncbi_submitter: Guangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;x__unclassified Candidatus Brocadiia;s__Candidatus Brocadiia bacterium JP1


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Radboud University


ncbi_country: Brazil: Braganca

ncbi_organism_name: Actinomycetes bacterium


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Candidatus Marithrix sp.

ncbi_submitter: Institute of Deep-sea Science and Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Candidatus Marithrix;x__unclassified Candidatus Marithrix;s__Candidatus Marithrix sp.


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiae bacterium RIFCSPLOWO2_12_FULL_45_20


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4567_28 depth 0-3 cm

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Pacific Ocean: North Pacific

ncbi_isolation_source: Pacific plankton

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: EMG


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: unknown


ncbi_country: Colombia

ncbi_isolation_source: Cenchrus clandestinum

ncbi_organism_name: Herbaspirillum sp. AP02

ncbi_submitter: Agrosavia


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Patescibacteria group bacterium UBA3524

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA3524


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Salmonella enterica CVM N46811 v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Chicken Wings

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Campylobacter coli

ncbi_submitter: USDA


ncbi_assembly_name: IMG-taxon 2634166304 annotated assembly

ncbi_organism_name: Poseidonocella sedimentorum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Aliicoccus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Aliarcobacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Fusicatenibacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Gracilibacillus boraciitolerans JCM 21714

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Pseudomonas sp. HY7a-MNA-CIBAN-0227

ncbi_submitter: University of Florence


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: South China Agricultural University


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 61 (4-2736020)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 61 (4-2736020)


ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Wenzhou Medical University


ncbi_organism_name: Runella sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Phycisphaerales bacterium UBA1924

ncbi_submitter: Xiamen University


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Lethbridge


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Aeromonas sp.

ncbi_submitter: EMG


ncbi_submitter: IMPERIAL COLLEGE LONDON

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas sp. GD03997

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_country: USA: Minnesota

ncbi_isolation_source: normally sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Research Institute


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Roseivirga sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Pseudomonas gessardii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: New Zealand

ncbi_organism_name: Rhizobium sp. ICMP 5592

ncbi_strain_identifiers: ICMP 5592

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3290-1

ncbi_submitter: Broad Institute


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_submitter: Children's Hospital of Fudan University


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_country: Peru: Cusco

ncbi_isolation_source: Bronchial aspirate

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: United Kingdom: Hertfordshire

ncbi_isolation_source: Bovine aborted fetus

ncbi_organism_name: Campylobacter fetus subsp. venerealis

ncbi_submitter: Faculdade de Medicina Veterinaria, Universidade de Lisboa


ncbi_organism_name: Enterococcus faecium TC 6

ncbi_strain_identifiers: TC 6

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecium;x__Enterococcus faecium TC 6


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 314

ncbi_organism_name: Staphylococcus gallinarum

ncbi_strain_identifiers: SNUC 5344

ncbi_submitter: University of Calgary


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Allorhizobium sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic

ncbi_isolation_source: fermentation bioreactor

ncbi_organism_name: Clostridium diolis

ncbi_submitter: Brno University of Technology


ncbi_country: South Africa

ncbi_isolation_source: production facility

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: sputum of child cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Alaminos Canyon; Gulf of Mexico

ncbi_isolation_source: deep-sea cold seep carbonates

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bifidobacterium boum

ncbi_submitter: Quadram Institute Bioscience


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Dickeya dadantii

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Manitoba


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_submitter: Shantou University Medical College


ncbi_isolation_source: freshwater metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Leeuwenhoekiella sp. A16

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_country: China

ncbi_isolation_source: chicken waste

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Germany

ncbi_organism_name: Chlamydia psittaci 02DC24

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Streptomyces griseofuscus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile DA00114

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom: Lincoln

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ATCC 33591_Moe6

ncbi_submitter: University of Lincoln


ncbi_country: USA: Nebraska

ncbi_isolation_source: blood

ncbi_submitter: UNMC


ncbi_country: China: SiChuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: South Korea: Anseong-si

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus roseus

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_organism_name: Tenericutes bacterium HGW-Tenericutes-2

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__unclassified Mycoplasmatota;s__Tenericutes bacterium HGW-Tenericutes-2


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Arcobacter cryaerophilus gv. pseudocryaerophilus

ncbi_strain_identifiers: LEO 109

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Sphingobacterium sp.


ncbi_country: Hong Kong

ncbi_isolation_source: skin swab from dog with canine pyoderma

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: South Carolina

ncbi_isolation_source: pharyngeal mucosa

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: California; Calistoga

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Rhodococcus sp.


gtdb_type_species_of_genus: t

ncbi_organism_name: Gottschalkia acidurici 9a

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: China: Fujian Province

ncbi_isolation_source: melamine production wastewater

ncbi_organism_name: Melaminivora alkalimesophila

ncbi_submitter: Institute of Urban Environment, Chinese Academy of Sciences


ncbi_country: Serbia

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_country: China: HulunBuir; InnerMongolia

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_country: USA: MD

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Shandong

ncbi_isolation_source: razor clam

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Microbacterium sp. UBA1667


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_isolation_source: minced meat bovine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Chicago

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Aliiglaciecola sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_submitter: Christian Medical College


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of California, Davis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alistipes communis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Lentisphaeraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lactobacillus helveticus H10

ncbi_submitter: The Key Laboratory of Dairy Biotechnology and Bioengineering, Education Ministry of P. R. China, Department of Food Science and Engineering, Inner Mongolia Agricultural University, China


ncbi_organism_name: Nostoc sp. ChiQUE01b

ncbi_submitter: LANGEBIO


ncbi_country: Ukraine

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Ancylobacter oerskovii

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: EMG


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterobacter roggenkampii


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Ruian People's Hospital


ncbi_isolation_source: sea water

ncbi_organism_name: Colwellia chukchiensis

ncbi_submitter: Third Institute Of Oceanography,State Oceanic Administration


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Fluviicola sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: sheep gut metagenome


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Paenalcaligenes hominis

ncbi_submitter: McGill University


ncbi_country: China

ncbi_isolation_source: sour bamboo shoot

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Yunnan Minzu University


ncbi_country: Germany: Hainich National Park; Hainich Critical Zone Exploratory

ncbi_isolation_source: groundwater from well H41 incubated with 12C bicarbonate for 70 days

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Friedrich Schiller University Jena


ncbi_organism_name: uncultured Saccharospirillum sp.


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_organism_name: Cellvibrio japonicus

ncbi_submitter: University of Maryland - Baltimore County


ncbi_isolation_source: sputum

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Streptomyces sp. NPDC047000

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Clear Labs, Inc.


ncbi_isolation_source: Diarrheal patient

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: Geneva University Hospitals


ncbi_country: Switzerland

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Bern


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_country: USA: SC

ncbi_organism_name: Burkholderia sp. SRS-W-2-2016

ncbi_submitter: Florida A&M University


ncbi_organism_name: Weissella cibaria

ncbi_submitter: COSMAX BTI


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Vibrio parahaemolyticus


ncbi_isolation_source: mice gut

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: Institut Pasteur


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_country: Germany

ncbi_isolation_source: fish

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: India: Lucknow

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sanjay Gandhi Post Graduate Institute of Medical Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sphaerochaeta sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: cheese

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_submitter: Universite Laval


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Blautia faecicola


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Micavibrio aeruginosavorus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Xanthomonas hortorum pv. gardneri


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacillus sp. FSL M7-0777

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL M7-0777


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Alberta


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-096

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG14554

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptococcus suis 89-1591

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Varibaculum prostatecancerukia

ncbi_submitter: norwich medical school, university of east anglia, uk


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Brazil: Cidreira

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Federal University of Health Sciences of Porto Alegre


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Waddliaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Citrobacter europaeus

ncbi_submitter: University Hospital Frankfurt


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Sichuan University


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Sphingomicrobium sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: China: Harbin

ncbi_isolation_source: Soil leach

ncbi_organism_name: Acinetobacter sp. C_4_1

ncbi_submitter: heilongjiangdaxue


ncbi_country: South Korea

ncbi_isolation_source: barley

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Proteus mirabilis


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: toe web

ncbi_organism_name: Staphylococcus epidermidis NIHLM023

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: Calothrix sp. FACHB-1219

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Sweden


ncbi_organism_name: Anaplasma phagocytophilum str. HZ

ncbi_strain_identifiers: HZ

ncbi_submitter: TIGR


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas sp. M5

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Great Salt Lake sediment

ncbi_organism_name: Halanaerobium praevalens DSM 2228


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Korea Polar Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F27252

ncbi_submitter: Broad Institute


ncbi_submitter: Southern University of Science and Technology


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: India: Nagpur

ncbi_isolation_source: sludge from phenol fed wastewater aerobic bioreactor

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: CSIR-National Environmental Engineering Research Institute


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_country: Thailand: Nakhon Pathom

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Medical Technology, Mahidol University


ncbi_isolation_source: sea urchin; Strongylocentrotus intermedius

ncbi_organism_name: Vibrio coralliilyticus

ncbi_submitter: Dalian Ocean University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Anaeromassilibacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_organism_name: Streptococcus agalactiae MRI Z1-199

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Streptomyces sp. 1222.5

ncbi_submitter: BGI Research


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Atopobiaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: stanford university school of medicine