ncbi_country: Russia: Tambov region

ncbi_isolation_source: Boiled chiken

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Central Research Institute of Epidemiology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_genome_representation: full

ncbi_isolation_source: Background Grass (no manure on field)

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: G2 BM LAM CEF 5

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Pseudomonas sp. zfem005

ncbi_submitter: Baylor College of Medicine


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: London

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_country: Germany

ncbi_organism_name: Leptospira borgpetersenii str. Brem 307

ncbi_strain_identifiers: Brem 307

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira borgpetersenii;x__Leptospira borgpetersenii str. Brem 307


gtdb_representative: t

ncbi_organism_name: Coxiellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: TX

ncbi_isolation_source: canine feces

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Texas Tech University


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Brucella sp. F5/99

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_country: China: Zhejiang province

ncbi_isolation_source: soil

ncbi_organism_name: Marinobacter caseinilyticus

ncbi_refseq_category: reference genome

ncbi_submitter: Zhejiang University

ncbi_type_material_designation: assembly from type material


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: candidate division SR1 bacterium

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;x__unclassified Candidatus Absconditabacteria;s__candidate division SR1 bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Flavobacteriales bacterium UBA1167

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Spain

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bacteriovorax stolpii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Terracidiphilus sp.


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Alistipes inops

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: United Arab Emirates University


ncbi_organism_name: Holdemanella porci


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Bacteroides xylanisolvens


ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: University of Sheffield


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: Proximal colon


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_isolation_source: Food - processed meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Harvard University


ncbi_country: Taiwan

ncbi_isolation_source: Taichung Veterans General Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Hawaii

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: MIT


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Fusobacterium polymorphum F0401

ncbi_submitter: Broad Institute


ncbi_country: USA: California; Middletown

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: Two-stage PNA wastewater reactor

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Washington


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Monash University


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: NORHED grant


ncbi_assembly_name: Rumen uncultured genome RUG11079

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: J.Craig Venter Institute


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Aestuariivita sp.

ncbi_submitter: Academia Sinica


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: NanJing University


ncbi_assembly_level: Complete Genome

ncbi_country: China: Guangzhou

ncbi_isolation_source: ICU patient rectal swab

ncbi_submitter: University of Birmingham


ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institue


ncbi_organism_name: Methylobacterium brachiatum

ncbi_submitter: Northwest Missouri State University


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_country: Czech Republic: small pond in Luznice riverbed

ncbi_isolation_source: small water body covered by Chrysophytes

ncbi_organism_name: Limnohabitans sp. T6-20

ncbi_submitter: Biology Centre CAS


ncbi_country: Iran: Tehran

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudobdellovibrio sp.

ncbi_submitter: University of Tehran


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1229

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1229


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: aquatic

ncbi_organism_name: Lysobacteraceae bacterium


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Japan:Tokyo 194-8511; Machida; Minamiooya 11; Mitsubishi Kasei Institute of Life Sciences

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_level: Chromosome

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: A. baumannii

ncbi_submitter: Seoul National University Children's Hospital


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Pectobacterium polaris

ncbi_submitter: Pennsylvania State University


ncbi_country: USA: Indiana

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: Ottawa Research and Development Center


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Azospirillum sp.


ncbi_isolation_source: surface swab

ncbi_organism_name: Empedobacter sp. GD03644

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Ukraine

ncbi_isolation_source: Perianal swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Boseongicola sp. SB0662_bin_57

ncbi_submitter: University of Queensland


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Neisseria mucosa

ncbi_submitter: Loyola University Chicago


ncbi_country: South Africa: Kwazulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Actinomycetaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL010080


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Pararuminococcus gallinarum

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Pararuminococcus;s__Candidatus Pararuminococcus gallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pararuminococcus;s__Candidatus Pararuminococcus gallinarum


ncbi_isolation_source: fecal incubation

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Agrobacterium fabrum

ncbi_submitter: Academia Sinica


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Blautia massiliensis (ex Durand et al. 2017)

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Faecalicoccus sp. LCP19S3_G6

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Escherichia coli

ncbi_submitter: INDICASAT AIP


ncbi_organism_name: Streptomyces sp. NPDC060188

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Rhodobacter maris

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: University of South Africa


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolate: AOP38_B2_surf _bin _8

ncbi_organism_name: Agrococcus casei

ncbi_strain_identifiers: AOP38_B2_surf _bin _8

ncbi_submitter: Genoscope


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_submitter: North South University


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: cold seep

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_assembly_name: Rumen uncultured genome RUG11675

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: University of Utah


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolate: MAG 5

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_strain_identifiers: MAG 5

ncbi_submitter: WHOI


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Deltaproteobacteria bacterium UBA2159

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA2159


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Turkey: Samsun

ncbi_organism_name: Streptomyces sp. RK74B

ncbi_submitter: Ondokuz Mayis University


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1136

ncbi_submitter: Broad Institute


ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S058_01195

ncbi_submitter: Zhejiang University


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of California, Davis


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-8966

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-0834

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_country: China

ncbi_organism_name: Pseudomonas sp. 18091276

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_isolate: MAVSY

ncbi_organism_name: Chromatiales bacterium

ncbi_strain_identifiers: MAVSY

ncbi_submitter: Institute of Oceanology, Chinese academy of sciences


ncbi_organism_name: Streptomyces sp. NPDC006385

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


gtdb_type_species_of_genus: t

ncbi_country: South Korea

ncbi_organism_name: Paratractidigestivibacter faecalis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Institut Pasteur


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Siminovitchia fordii

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_country: Turkey

ncbi_isolation_source: Blood Culture

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Dokuz Eylul University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Beijing

ncbi_organism_name: Legionella septentrionalis

ncbi_submitter: kingMed Center for Clinical Laborary


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Mameliella sp. MMSF_3537

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_country: Antarctica: Don Juan Pond Basin; Wright Valley

ncbi_isolation_source: microbial mat

ncbi_organism_name: Massilia sp. DJPM01

ncbi_submitter: University of Tennessee - Knoxville


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: Ohio; Old Woman Creek NERR

ncbi_isolation_source: freshwater wetland soil

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Microlunatus aurantiacus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_country: Antarctica: South Shetland Islands

ncbi_isolation_source: Diesel fuel contaminated soil

ncbi_organism_name: Sphingobium sp. D43FB

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Helicobacter winghamensis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chicago

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: University of Chicago


ncbi_country: USA: San Diego; CA

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: University of Wisconsin Milwaukee


ncbi_country: Taiwan: Hospital

ncbi_isolation_source: plasma

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Chung Cheng University


ncbi_country: South Korea: Yellow Sea

ncbi_isolation_source: intertidal sediment [ENVO:00002179]

ncbi_organism_name: Qipengyuania gaetbuli

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Arenicella sp.

ncbi_submitter: Monash University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;s__Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_FULL_43_55


ncbi_country: Canada: Labrador Sea

ncbi_isolation_source: Microcosm inoculated with Labrador Shelf sediment and amended with petroleum hydrocarbons

ncbi_organism_name: Paraperlucidibaca sp.

ncbi_submitter: University of Calgary


ncbi_country: India: Guwahati; Assam; Diparbill Lake; Garchuk-Azra

ncbi_isolation_source: lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Brazil: Sao Paulo State

ncbi_isolation_source: Acromyrmex fungus garden

ncbi_organism_name: Pantoea sp. Acro-807

ncbi_submitter: UW-Madison


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Akkermansia sp.


ncbi_country: New Zealand: Central Otago

ncbi_organism_name: Pseudomonas amygdali pv. morsprunorum

ncbi_strain_identifiers: ICMP 3676

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. morsprunorum


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: Belgium

ncbi_isolation_source: field experiment

ncbi_organism_name: Curtobacterium flaccumfaciens pv. betae

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Aliiroseovarius sp. xm-a-104

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces


ncbi_country: France: Riquewhr

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Kher Heng Leong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Czech Republic

ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: Streptomyces sp. NPDC059010

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: PA

ncbi_isolation_source: food

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Altaica


ncbi_country: Sudan

ncbi_organism_name: Xanthomonas citri pv. malvacearum

ncbi_strain_identifiers: CFBP 2530

ncbi_submitter: NSSN-X

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. malvacearum


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Minisyncoccia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Parabacteroides distasonis


ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Burkholderiales bacterium IMCC 14736

ncbi_submitter: Inha university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__unclassified Burkholderiales;s__Burkholderiales bacterium IMCC 14736


ncbi_organism_name: Megasphaera hexanoica

ncbi_strain_identifiers: MH

ncbi_submitter: Hanyang University


ncbi_organism_name: Emticicia sp.

ncbi_submitter: EPFL


ncbi_organism_name: Enterobacter cloacae complex sp. IR5435

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5435


ncbi_organism_name: Vibrio cionasavignyae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: University of Parma


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Murdoch University


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Leptospira meyeri

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_assembly_name: freshwater MAG --- Ki3-D2_bin-2120

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Pedobacter sp. ISL-64

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Norway

ncbi_isolation_source: fjord

ncbi_organism_name: Sulfitobacter sp. CB-A

ncbi_strain_identifiers: CB-A

ncbi_submitter: The University of Tennessee Knoxville


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-1455

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp. D53t1_180928_C8

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: Comamonas kerstersii

ncbi_submitter: EMG


ncbi_country: Malaysia

ncbi_isolation_source: Raub General Hospital; Pahang

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Universiti Kebangsaan Malaysia


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China

ncbi_isolation_source: secretion

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_country: Germany

ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: skin lesion

ncbi_organism_name: Tenacibaculum finnmarkense genomovar ulcerans

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_organism_name: uncultured Rhodohalobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Northwestern University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Parasphingopyxis sp.

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_country: Saudi Arabia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Forsyth Institute


ncbi_country: China: Urumqi;Xinjiang

ncbi_isolation_source: prepared checken wing from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Beijing

ncbi_organism_name: Niabella pedocola

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Nitrospira sp.


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Xanthomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Candidatus Scatocola faecipullorum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Romboutsia ilealis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indian Ocean: Bay of Bengal

ncbi_isolation_source: Bay of Bengal

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Naval Research Laboratory


ncbi_country: USA:Orange County

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_country: China: Tongling; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: South china normal university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Nanjing Forestry University


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Rariglobus sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Ontario; Algonquin Park; Dickson Lake

ncbi_isolation_source: lake water

ncbi_organism_name: Pseudanabaena sp. UWO310

ncbi_submitter: Western University


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Shenzhen

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Switzerland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Thailand: Bangkok; Pomprab market

ncbi_isolation_source: pork

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Belgium: Netherlands

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Queensland


ncbi_country: USA: MI

ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Lachnospiraceae bacterium 3_1_46FAA

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolate: AOP30_C2_surf _bin _7

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: AOP30_C2_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Candidatus Bipolaricaulia bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;x__unclassified Candidatus Bipolaricaulia;s__Candidatus Bipolaricaulia bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Research Center of Biotechnology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_submitter: stanford university school of medicine


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Patescibacteria group bacterium UBA1388

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA1388


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Mitsuokella jalaludinii


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: EPFL


ncbi_country: Russia: Moscow

ncbi_isolation_source: central venous catheter (CVC)

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Japan

ncbi_isolation_source: Sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_organism_name: Citrobacter sp. 506

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Rummeliibacillus stabekisii

ncbi_strain_identifiers: MER TA 13

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: USA: Ardmore; Oklahoma

ncbi_organism_name: Spiroplasma helicoides

ncbi_submitter: Academia Sinica


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_organism_name: Enterococcus sp. C37

ncbi_submitter: Northwest A & F University


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: intestinal stoma

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: surface water

ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: NAK 161

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Klebsiella sp. 136913

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Mexico

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Quebec

ncbi_isolation_source: Slaughterhouse-environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Tamazight Cherifi's shared submissions


ncbi_country: Greece

ncbi_isolation_source: water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Agricultural University of Athens


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P176P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC001743

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_strain_identifiers: NBRC 3163

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_country: Belgium

ncbi_isolation_source: Plant material

ncbi_organism_name: Pseudomonas amygdali pv. aesculi

ncbi_submitter: University of Edinburgh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. aesculi


ncbi_country: China

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_assembly_name: IMG-taxon 2609459633 annotated assembly

ncbi_organism_name: Bradyrhizobium sp. cf659

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: University of Chicago


ncbi_organism_name: Staphylococcus sp. FSL H8-0476

ncbi_submitter: Penn State


ncbi_country: USA: New-York

ncbi_organism_name: Pantoea agglomerans pv. betae

ncbi_submitter: Tel-Aviv University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Pantoea;x__Pantoea agglomerans group;s__Pantoea agglomerans;x__Pantoea agglomerans pv. betae


ncbi_country: Portugal

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JMI Laboratories


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Paenarthrobacter ureafaciens

ncbi_submitter: Guangxi University


ncbi_organism_name: Ruminococcus bromii


ncbi_country: Czech Republic: Ostrava

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Sandarakinorhabdus sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany: Wietze

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacterium beibuense

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: cloacal swab

ncbi_submitter: School of Veterinary Medicine and Animal Science, University of Sao Paulo


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Poland: Koscian

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Medicines Institute


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG14909

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: Whole genome assembly

ncbi_country: Japan

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii GTC 09479

ncbi_submitter: Institute of Microbial Technology (IMTECH), Chandigarh, India 160036

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;s__Citrobacter freundii;x__Citrobacter freundii GTC 09479


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Angelakisella sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Burkholderia mallei

ncbi_submitter: cBio Corp


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Zhejiang; Lishui

ncbi_isolation_source: soil

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: Lishui University


ncbi_organism_name: uncultured Neisseria sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Poyang Lake; Jiangxi Province

ncbi_isolation_source: Polygonum lapathifolium L.

ncbi_organism_name: Paenibacillus polygoni

ncbi_submitter: Northeast Institute of geography and Agroecology, Chinese Academy of Sciences


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient sediment

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: water

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: The Ohio State University


ncbi_organism_name: Kitasatospora sp. NPDC091207

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Roseinatronobacter thiooxidans

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_submitter: University of Galway


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Desulfofervidaceae bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Desulfofervidia;o__Candidatus Desulfofervidales;f__Candidatus Desulfofervidaceae;x__unclassified Candidatus Desulfofervidaceae;s__Candidatus Desulfofervidaceae bacterium


ncbi_country: China: Ili; Xinjiang

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Terriglobales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: AAFC


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Nitratifractor sp.


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Hydrogenobacter sp.


ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Blautia faecis


ncbi_organism_name: Rheinheimera aquimaris

ncbi_submitter: University of East Anglia


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Salmonella sp. SAL4359

ncbi_submitter: Zhejiang university


ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: lanzhou university


ncbi_organism_name: Ensifer sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Chlamydiaceae bacterium


ncbi_organism_name: Pseudomonas monteilii


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: unidentified bacterial endosymbiont

ncbi_submitter: ROTHAMSTED RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__unidentified bacterial endosymbiont


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium D16-50

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Seoul Metropolitan Government Research Institute of Public Health and Environment


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_submitter: Quadram Institutte


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella variicola


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Queensland


ncbi_country: Israel: Jerusalem; The Tisch Family Biblical Zoo

ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: The Hebrew University of Jerusalem


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus GGMC6018

ncbi_submitter: Broad Institute


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Latilactobacillus sakei

ncbi_strain_identifiers: wikim 22

ncbi_submitter: WIKIM


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Forsyth Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: North Carolina

ncbi_organism_name: Escherichia coli O169:H41

ncbi_submitter: CDC


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Alistipes sp.


ncbi_organism_name: Ignavibacteriaceae bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: UANTW


ncbi_isolation_source: Dust

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0106


ncbi_submitter: Shantou University Medical College


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_country: New Zealand

ncbi_isolation_source: Diphtheritic lesion

ncbi_organism_name: Corynebacterium sp. 73A

ncbi_submitter: Northumbria University


ncbi_country: China: Beijing

ncbi_isolation_source: Ear swab

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: China Agricultural University


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Denmark

ncbi_organism_name: Latilactobacillus sakei subsp. sakei

ncbi_submitter: Carlsberg Research Laboratory


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: China: Dalian

ncbi_isolation_source: tumor tissue of colon cancer

ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Spiribacter sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Iron Curtain Cave; Chilliwack; British Columbia

ncbi_isolation_source: speleothem

ncbi_organism_name: Sphingobacterium sp. PCS056

ncbi_submitter: University of Ottawa


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Vienna


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Bacillus safensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Missouri

ncbi_isolation_source: urine

ncbi_organism_name: Thiopseudomonas alkaliphila

ncbi_submitter: CDC


ncbi_country: USA: MD

ncbi_isolation_source: Hybrid Tilapia

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Actinophytocola sp.

ncbi_submitter: Princeton University


ncbi_country: Sri Lanka: Colombo

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Xuyi

ncbi_isolation_source: secretion

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_assembly_name: R-75501 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_submitter: NEOSTAR_Indo-UK Project on AMR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_assembly_name: freshwater MAG --- MJ3_bin-256

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Eubacterium sp. AM49-13BH

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. AM49-13BH


ncbi_country: Switzerland: Zurich

ncbi_submitter: University of Zurich


ncbi_country: Australia: Newcastle

ncbi_organism_name: Segatella copri

ncbi_submitter: University of Queensland


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Uniwersytet Warminsko-Mazurski w Olsztynie


ncbi_country: Viet Nam: Tay Ninh

ncbi_isolation_source: urethral exudate

ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: PIHCM 20154

ncbi_submitter: Pasteur Institute of Ho Chi Minh City


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Monash University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA: Carson; CA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: University of Salamanca


ncbi_assembly_name: Pseudomonas aeruginosa strain PE224

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Benemerita Universidad Autonoma de Puebla


ncbi_organism_name: uncultured Thalassospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Providencia sp. Je.9.19

ncbi_submitter: Center of Biotechnology of Borj Cedria


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Candidatus Choladousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Choladousia;x__unclassified Candidatus Choladousia;s__Candidatus Choladousia sp.


ncbi_organism_name: Streptomyces sp. NPDC093221

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Nodosilinea sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Salmonella sp. LSP 151/00

ncbi_submitter: University of Oviedo


ncbi_organism_name: Flavobacterium galactosi

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: cold seep

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China

ncbi_isolation_source: black pine root

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Shandong University at Weihai


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Argentina: Buenos Aires

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Buenos Aires, CONICET


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_country: USA: WA

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: University of Washington


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0855

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Russia: Yessentuki

ncbi_isolation_source: subsurface water

ncbi_organism_name: Brevundimonas sp.


ncbi_organism_name: Aestuariivirga sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA

ncbi_isolation_source: BONE

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Peru

ncbi_isolation_source: nasopharynx


ncbi_country: France

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: Medicago Hapmap Project


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: body fluid

ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium RIFOXYA1_FULL_42_9


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolate: MAG 90

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: MAG 90

ncbi_submitter: WHOI


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Sutterella faecalis

ncbi_submitter: UIUC


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: SampleP

ncbi_submitter: California Department of Public Health


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Opitutaceae bacterium


ncbi_country: Senegal

ncbi_isolation_source: host stool sample

ncbi_organism_name: Senegalimassilia anaerobia JC110

ncbi_submitter: laboratoire URMITE CNRS 6236


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Universidad Nacional Andres Bello


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: SC


ncbi_strain_identifiers: SAZMYU

ncbi_submitter: QUAID-I-AZAM UNIVERSITY ISLAMABAD


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Belgium

ncbi_isolation_source: Kombucha

ncbi_organism_name: Gluconobacter sp. R75628

ncbi_submitter: Ghent University


ncbi_country: USA: VA

ncbi_isolation_source: feces turkey (Meleagris gallopavo)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Gambia

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Oscillibacter sp. MSJ-31

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Germany: Freising

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: Technical University of Munich


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Holdemania massiliensis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Norway: Bergen

ncbi_isolation_source: biopsy

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P85P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Kitasatospora sp. NPDC127035

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8835

ncbi_submitter: University of Exeter


ncbi_isolation_source: Small intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Church and Dwight


ncbi_country: USA: Tift Co.; GA

ncbi_isolation_source: thrips from peanut blossoms

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lentisphaeraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: IN

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Micromonospora humida


ncbi_organism_name: Fusobacterium ulcerans

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Beijing

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_country: China: Jilin

ncbi_isolation_source: soda lake

ncbi_organism_name: Alkalilacustris brevis

ncbi_submitter: zhejiang university


ncbi_country: China

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Phycicoccus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: GA

ncbi_isolation_source: Peanut Butter

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee;x__Salmonella enterica subsp. enterica serovar Tennessee str. 3133


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_isolation_source: metagenome

ncbi_organism_name: Thermoanaerobacter sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Parasediminibacterium paludis

ncbi_strain_identifiers: CECT 8010

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Providencia sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acetivibrionales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Atribacterota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: bacterium

ncbi_submitter: Rutgers University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Candidatus Nemicrothrix sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__environmental samples;s__uncultured Candidatus Nemicrothrix sp.


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_isolation_source: water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: CORNELL UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Greece: Argolis

ncbi_isolation_source: kidney of diseased fish

ncbi_organism_name: Aeromonas veronii

ncbi_strain_identifiers: PDB

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human stool

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Catenibacterium mitsuokai


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Viet Nam: Ho Chi Minh City

ncbi_isolation_source: urethral exudate

ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: PIHCM 20150

ncbi_submitter: Pasteur Institute of Ho Chi Minh City


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Netherlands

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: India: Mumbai

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Christian Medical College


ncbi_strain_identifiers: KCTC 3596

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Liquorilactobacillus;s__Liquorilactobacillus mali;x__Liquorilactobacillus mali KCTC 3596 = DSM 20444


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Paenibacillus sp. FSL L8-0340

ncbi_submitter: Penn State


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Portugal

ncbi_isolation_source: neck

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Health, Portugal


ncbi_organism_name: Novosphingobium sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: California; Castaic Lake

ncbi_isolation_source: non-axenic enrichment culture inoculated with lake water

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Blautia sp.


ncbi_country: France: Bretagne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Norway: Viken

ncbi_isolation_source: feces

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: JCVI


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Canada

ncbi_isolation_source: raw milk from cheese plant

ncbi_organism_name: Paenibacillus timonensis

ncbi_submitter: University of Guelph


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Kenya: Kakamega

ncbi_isolation_source: P5 gut compartment

ncbi_organism_name: Endomicrobiia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California; Modesto

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;x__unclassified Candidatus Zambryskiibacteriota;s__Candidatus Zambryskiibacteriota bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0399

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Faculty of Applied Biological Sciences, Gifu University


ncbi_organism_name: Mycobacterium montefiorense

ncbi_submitter: Laboratory of Aquatic Medicine School of Veterinary Medicine, Nippon Veterinary and Life Science University


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE