ncbi_country: Belgium

ncbi_isolation_source: blood

ncbi_organism_name: Yersinia enterocolitica

ncbi_strain_identifiers: WA


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Mesotoga sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Sichuan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


gtdb_representative: t

ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_strain_identifiers: MMM 354

ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: DCP

ncbi_submitter: Nizam College, Osmania University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Christensenella sp.


ncbi_assembly_level: Scaffold

ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila


ncbi_assembly_level: Complete Genome

ncbi_country: China: Changshou District; Chongqing City

ncbi_organism_name: Apibacter raozihei

ncbi_refseq_category: reference genome

ncbi_submitter: Chinese Center for Disease Control and Prevention

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland: Zurich

ncbi_submitter: University of Zurich


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0037

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptococcus dysgalactiae


ncbi_organism_name: Alistipes communis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom: Wales

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Swansea University


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Central Research Institute of Epidemiology


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2622736595 annotated assembly

ncbi_organism_name: Loktanella salsilacus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Yantai University


ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of California, Berkeley


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Czech Academy of Science


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: IMG-taxon 2724679795 annotated assembly

ncbi_organism_name: Chryseobacterium rhizoplanae


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces sp. ODS28

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Streptococcus suis


ncbi_country: France

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Paris-Sud


ncbi_country: Greece: Western Macedonia

ncbi_isolation_source: artisanal Greek Kefalograviera cheese

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Helicobacter pylori SA161A

ncbi_submitter: MHH


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Chile: Lirima thermal springs

ncbi_isolation_source: Water

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Granulosicoccaceae bacterium


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: cervical

ncbi_organism_name: Enterococcus sp. HMSC061C05

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Prevotella pallens

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Universiti Putra Malaysia


ncbi_isolation_source: Hospital

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus sp. DIV0691

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Phycicoccus sp.

ncbi_submitter: EPFL


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: University of South Africa


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin31

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: HIE bin31

ncbi_submitter: Monash University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: China: Banpo; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: South china normal university


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: Perianal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: USA:Highgate Springs; VT

ncbi_isolation_source: freshwater

ncbi_organism_name: Methylocystaceae bacterium UBA2095

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_isolation_source: citrus fruit food product

ncbi_submitter: Medical Affairs, Glaxosmithkline


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Streptomyces sp. NRRL F-5727

ncbi_strain_identifiers: NRRL F-5727

ncbi_submitter: University of Illinois


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruthenibacterium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Aurantimonas coralicida

ncbi_submitter: Tang lab


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Japan:Miyazaki Prefecture

ncbi_isolation_source: composting distilled shochu residue

ncbi_organism_name: Oenococcus kitaharae

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Synechococcus sp. BS307-5m-G34

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Malaya


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Actinomadura luteofluorescens

ncbi_submitter: Nanjing University


ncbi_isolation_source: sediment

ncbi_organism_name: Roseibium aggregatum

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_country: India

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Brazil: Guartela State Park; Tibagi; Parana.

ncbi_isolation_source: nodules

ncbi_organism_name: Paraburkholderia guartelaensis

ncbi_strain_identifiers: CNPSo 3008

ncbi_submitter: Embrapa Soja


ncbi_country: China: Zhejiang

ncbi_isolation_source: meat

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: blood

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: 2526PM;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Stellenbosch University


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: University of Georgia


ncbi_organism_name: Vibrio cholerae


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Soil

ncbi_organism_name: Asanoa ishikariensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: USA: Baltimore

ncbi_isolation_source: hospital; patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Johns Hopkins University


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: college of bioengineering


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: sputum

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: China

ncbi_isolation_source: activated sludge in a pesticide factory

ncbi_organism_name: Haoranjiania flava

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology, KRIBB


ncbi_isolation_source: Faeces


ncbi_isolation_source: human gut

ncbi_organism_name: Acidaminococcus massiliensis

ncbi_submitter: EMG


ncbi_country: China: Hong Kong

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: United Kingdom

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA: Michigan

ncbi_organism_name: Pseudarthrobacter sp. PvP004

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Oceanibaculum sp.

ncbi_submitter: SCOPE


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Virginia

ncbi_organism_name: Bradyrhizobium elkanii USDA 76

ncbi_strain_identifiers: USDA 76

ncbi_submitter: JGI


ncbi_country: South Korea: Chagwido Island

ncbi_isolation_source: sponge from subtidal zone

ncbi_organism_name: Aquimarina sp. 2201CG14-23

ncbi_submitter: Hannam University


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Cellvibrionaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_assembly_level: Chromosome

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_organism_name: Cycloclasticus sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: EMG


ncbi_organism_name: Variovorax sp. Varisp41

ncbi_submitter: North Carolina State University


ncbi_organism_name: Kineococcus sp. SYSU DK007

ncbi_strain_identifiers: SYSU DK007

ncbi_submitter: Sun Yat-sen University


ncbi_assembly_name: Rumen uncultured genome RUG11954

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Iowa State University


ncbi_country: Saudi Arabia: Thuwal; RO plant located on Red Sea

ncbi_isolation_source: biofilm from LA_RO membrane1

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Eubacteriales bacterium DFI.9.88

ncbi_submitter: University of Chicago


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: Antarctica

ncbi_isolation_source: Microbial mat

ncbi_organism_name: Clostridium lacusfryxellense

ncbi_submitter: University of Zurich


ncbi_assembly_name: Rumen uncultured genome RUG10537


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Brucella suis ATCC 23445

ncbi_submitter: Virginia Bioinformatics Institute (VBI)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella suis;x__Brucella suis bv. 2;x__Brucella suis ATCC 23445


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Flavonifractor sp. An135

ncbi_submitter: Veterinary Research Institute


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Komagataeibacter europaeus

ncbi_submitter: Microbial Institiue for Fermentation Industry


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG13130

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_country: Italy

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. ID38640

ncbi_submitter: Naicons srl


ncbi_country: Germany: Franconia; Thuengersheimer Ravensburg

ncbi_isolation_source: woody crown gall

ncbi_organism_name: Pseudomonas sp. CG7

ncbi_submitter: University of Wuerzburg


ncbi_country: China: Zhejiang

ncbi_isolation_source: gastroscopic antral biopsy specimen

ncbi_organism_name: Helicobacter pylori wls-5-13

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: China: Beijing

ncbi_isolation_source: Coelomic fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_country: India

ncbi_isolation_source: Rice seed

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: France

ncbi_organism_name: Saccharibacillus qingshengii

ncbi_submitter: University Reims Champagne Ardennes UMR FARE


ncbi_country: India: Bihar; Buxar; Buxar

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Rhizobium sp. NZLR1

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Singapore

ncbi_isolation_source: Sugary water

ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: NTU - Nanyang Technological University


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xenorhabdus griffiniae

ncbi_submitter: The University of Tennessee


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Hesse

ncbi_isolation_source: cow udder

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Hessian State Laboratory


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Friedrich-Loeffler-Institut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Australia: Gippsland Lakes

ncbi_isolation_source: freshwater

ncbi_organism_name: Nodularia spumigena CS-588/05

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: South Korea: Seoul

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Simkania sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Methylibium sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 04T2A

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_assembly_name: Rumen uncultured genome RUG137

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacillus sp. A260

ncbi_submitter: CHINESE ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. A260


ncbi_organism_name: Phycicoccus sp.


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Pseudomonas sp. A6

ncbi_submitter: Shanghai Academy of Agricultural Sciences


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Netherlands: Hegelsom; Chicken field

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Columbia University Medical Center


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Microcystis sp. LE19-251.1A

ncbi_submitter: University of Michigan


ncbi_country: Italy

ncbi_isolation_source: salami lard

ncbi_submitter: FDA


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: SCOPE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: BGI


ncbi_organism_name: Blautia wexlerae


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_country: USA: MO

ncbi_isolation_source: cecum

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Desulfobulbaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Canada

ncbi_isolation_source: patient with hemolytic uremic syndrome (HUS)

ncbi_organism_name: Escherichia coli O91:H21 str. B2F1

ncbi_submitter: US FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O91:H21;x__Escherichia coli O91:H21 str. B2F1


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_organism_name: Clostridium cadaveris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces huasconensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycobacterium seoulense

ncbi_submitter: Affiliated Dongyang Hospital of Wenzhou Medical University


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: Anaerovoracaceae bacterium


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Stutzerimonas xanthomarina


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: cold seep

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: France: Huningue

ncbi_isolation_source: hexachlorocyclohexane-contaminated soil

ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: Universite d'Auvergne


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: James Cook University


ncbi_country: Canada: Guelph

ncbi_isolation_source: Wastewater treatment plant

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Australia

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_organism_name: Acinetobacter baumannii ABIsac_ColiS

ncbi_submitter: Seydina


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_submitter: Chang Gung Memorial Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Sao Paulo


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- AM-2014-D8_bin-0907

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Acinetobacter baumannii TG19582

ncbi_submitter: Translational Genomics Research Institute


ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: UCM


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Besancon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_isolation_source: grass from the park in a vetenary clinic

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Bern


ncbi_isolation_source: garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_organism_name: Mycobacterium canetti


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Brazil: Brasilia

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Brasilia University


ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Onthomorpha sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Onthomorpha;x__unclassified Candidatus Onthomorpha;s__Candidatus Onthomorpha sp.


ncbi_country: Japan: Hokkaido; Tobetsu-cho

ncbi_organism_name: Veillonella tobetsuensis

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: USDA-ARS


ncbi_organism_name: Staphylococcus pseudintermedius


ncbi_country: India: Nagpur

ncbi_isolation_source: sludge from phenol fed wastewater aerobic bioreactor

ncbi_organism_name: Dechloromonas aromatica (nom. nud.)

ncbi_submitter: CSIR-National Environmental Engineering Research Institute


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_organism_name: Polyangiaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Enterobacter chuandaensis

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Deinococcus proteolyticus MRP

ncbi_strain_identifiers: MRP

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_assembly_name: Rumen uncultured genome RUG12300

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Aidingimonas halophila

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Jinhua

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinhua Central Hospital


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: China: Shanghai

ncbi_submitter: Monash Unversity


ncbi_country: United Kingdom: Warwickshire

ncbi_organism_name: Pseudomonas amygdali pv. morsprunorum

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. morsprunorum


ncbi_country: USA: FL

ncbi_isolation_source: feces calf

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Seattle

ncbi_isolation_source: Airway secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SCH


ncbi_organism_name: Duncaniella sp.

ncbi_submitter: University of Queensland


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD14709

ncbi_submitter: Broad Institute


ncbi_organism_name: Achromobacter marplatensis

ncbi_submitter: EMG


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Capnocytophaga sp. CM59

ncbi_submitter: J. Craig Venter Institute


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Aurantimonas coralicida

ncbi_submitter: Xiamen University


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- MJ110927A_bin-622

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Turkey

ncbi_isolation_source: yogurt

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Bursa GYKMAE


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: urinary tract infection

ncbi_submitter: AstraZeneca


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium CG_4_10_14_0_8_um_filter_39_9


ncbi_isolation_source: terrestrial

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_assembly_name: Frankia Ea1-12

ncbi_organism_name: Parafrankia sp. Ea1.12

ncbi_submitter: Universite Lyon1


ncbi_country: China: Tibet; Quzhuomu hot spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Candidatus Geothermincola secundus

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Candidatus Geothermincolia;o__Candidatus Geothermincolales;f__Candidatus Geothermincolaceae;g__Candidatus Geothermincola;s__Candidatus Geothermincola secundus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Geothermincolia;o__Candidatus Geothermincolales;f__Candidatus Geothermincolaceae;g__Candidatus Geothermincola;s__Candidatus Geothermincola secundus


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient35 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of New South Wales


ncbi_organism_name: Mammaliicoccus sciuri


ncbi_country: France: Besancon

ncbi_isolation_source: Rectal swab

ncbi_submitter: University Hospital of Besancon


ncbi_assembly_name: Salmonella enterica CVM N45935 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Sagittula sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 24845_5

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudidiomarina gelatinasegens

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_organism_name: Candidatus Clostridium radicumherbarum

ncbi_strain_identifiers: WILCCON 0202


ncbi_organism_name: uncultured Owenweeksia sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Michigan State University


ncbi_country: USA: DC

ncbi_isolation_source: Peripheral blood

ncbi_organism_name: Aerococcus viridans

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Streptomyces lavendulae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: SOX J

ncbi_isolation_source: thiotroph symbiont from mussel gill epithellium

ncbi_strain_identifiers: SOX J

ncbi_submitter: CRC 1182 Origin and Function of Metaorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Bathymodiolus brooksi thiotrophic gill symbiont


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: EMG


ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Zhejiang

ncbi_isolation_source: Urine culture


ncbi_country: Cambodia

ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: JCVI


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_organism_name: Yinghuangia sp.


ncbi_country: France

ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: NRRL BD-229

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Wenzhou

ncbi_isolation_source: Homo sapiens

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Wenzhou Medical University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: anammox granule sludge

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Chongqing university


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: henan normal university


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Fujian

ncbi_isolation_source: 2225E medium

ncbi_organism_name: Psychrobacter sp. Ps3

ncbi_submitter: Xiamen University


ncbi_organism_name: Sessilibacter corallicola

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NITE)


ncbi_country: USA: MO

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_organism_name: Woeseia sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of California at Davis


ncbi_country: Australia: Haines; Kangaroo Island

ncbi_isolation_source: Meat Ant

ncbi_organism_name: Fructilactobacillus cliffordii

ncbi_submitter: The University of Adelaide


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Center for Laboratory Medicine


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: IPB University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: China: Hainan Xiuying residential area

ncbi_isolation_source: household tap filter

ncbi_organism_name: Nitrospira sp. HN-bin3

ncbi_submitter: The University Hong Kong


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Brazil: Guapiacu

ncbi_isolation_source: cloacal swab

ncbi_submitter: FAMERP


ncbi_country: Japan

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_country: Thailand

ncbi_isolation_source: rhizospheric soil

ncbi_organism_name: Saccharopolyspora ipomoeae

ncbi_submitter: Rajamangala University of Technology Suvarnabhumi


ncbi_country: USA: Philadelphia

ncbi_isolation_source: retail chicken skin

ncbi_submitter: United States Department of Agriculture


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes communis

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium GW2011_GWA1_37_16


ncbi_organism_name: Dorea sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Fusobacterium periodonticum


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Institute of Biochemistry and Biophysics Polish Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium


ncbi_country: India: Tezpur

ncbi_isolation_source: seedlings

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Tezpur University


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_country: China: Jiangsu Province

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Shanghai Ocean University


ncbi_country: United Kingdom

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Surrey


ncbi_organism_name: Streptomyces umbrinus

ncbi_strain_identifiers: CECT 3212

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Pacific Ocean: South Pacific

ncbi_organism_name: Erythrobacter sp. EhN03

ncbi_submitter: University of Alberta


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bifidobacterium bifidum


ncbi_country: Australia: Victoria; Werribee; Western Treatment Plant

ncbi_organism_name: Escherichia coli

ncbi_submitter: Federation University Australia


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: USDA


ncbi_country: Cambodia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_country: China

ncbi_isolation_source: mangrove sediments

ncbi_organism_name: Bacillus litorisediminis

ncbi_submitter: Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Papua New Guinea: Hoia Bay

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Moorena sp. SIO3H5

ncbi_submitter: UCSD


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- MJ120620A_bin-411

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: China: Zhejiang

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Caucasica


ncbi_country: Greece

ncbi_isolation_source: Mussels

ncbi_organism_name: Vibrio splendidus

ncbi_strain_identifiers: VaAn

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Shaanxi

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-b_bin-498


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Chloroflexota bacterium


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Alloalcanivorax sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Tepidisphaerales bacterium

ncbi_submitter: University of Galway


ncbi_organism_name: uncultured Sporofaciens sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agricultural Sciences (CAAS)


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: EMG


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institutte


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4571_4 depth 0-3 cm

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Streptomyces sp. B1-3

ncbi_submitter: Hainan University


ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Brachybacterium sacelli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Brazil: Blumenau

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- VK3_bin-1308

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: alpha proteobacterium SCGC AAA536-G10

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__unclassified Alphaproteobacteria;s__alpha proteobacterium SCGC AAA536-G10


ncbi_country: Poland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lejia lagoon

ncbi_isolation_source: bare soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sciensano


ncbi_organism_name: Carnobacterium divergens


ncbi_isolation_source: Environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G.Caporale"


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: India: Chandigarh

ncbi_isolation_source: dental plaque

ncbi_organism_name: Paraclostridium dentum

ncbi_submitter: CSIR- INSTITUTE OF MICROBIAL TECHNOLOGY


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Italy: San Giovanni Rotondo

ncbi_isolation_source: Respiratory sample

ncbi_submitter: University of Genoa


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Candidatus Gallimonas caecicola

ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas caecicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas caecicola


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Pseudomonas sp. D(2018)

ncbi_submitter: University of Trento


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Spain

ncbi_isolation_source: urine sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Laval


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_country: China

ncbi_organism_name: Janthinobacterium sp. FT14W

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Tanzania

ncbi_isolation_source: Nasal


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Urethral

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: South Korea: Seoul

ncbi_isolation_source: air-conditioning system

ncbi_organism_name: Methylobacterium frigidaeris

ncbi_submitter: Chung-Ang University


ncbi_country: United Kingdom

ncbi_isolation_source: soil

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: New Zealand: Ruakura; Hamilton

ncbi_isolation_source: rumen

ncbi_organism_name: Pseudobutyrivibrio xylanivorans

ncbi_submitter: AgResearch


ncbi_country: China: Guangdong

ncbi_organism_name: Alteromonas stellipolaris

ncbi_submitter: Shantou University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Korean adult feces

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Korea Food Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Bacteroides caccae


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Streptomyces sp. NPDC007074

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Japan

ncbi_isolation_source: influent municipal wastewater

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_country: Denmark: Marselisborg harbour

ncbi_isolate: RB

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Electrothrix communis

ncbi_strain_identifiers: RB

ncbi_submitter: Aarhus University


ncbi_assembly_name: Rumen uncultured genome RUG12734

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Chinese pickle

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_assembly_name: Rumen uncultured genome RUG10085

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Gordonia hydrophobica

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Monto

ncbi_isolation_source: Pool

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_country: New Zealand

ncbi_isolation_source: dairy products

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Massey University


ncbi_organism_name: Streptomyces sp. NPDC050658


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Escherichia coli CVM N36158PS v. 1.0

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N36158PS

ncbi_submitter: FDA


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_country: China: Erenhot

ncbi_isolation_source: body

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Ligilactobacillus ruminis DPC 6832

ncbi_submitter: Teagasc Food Research Centre


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_organism_name: Rivihabitans pingtungensis


ncbi_isolation_source: termite gut

ncbi_organism_name: Eggerthellales bacterium UBA948

ncbi_submitter: University of Queensland


ncbi_country: USA: Ithaca

ncbi_isolation_source: cows with mastitis at dairy farm

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: UNICAMP


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: zhejiang University


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: USA: New York City

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Switzerland: Bern

ncbi_organism_name: Blautia pseudococcoides

ncbi_submitter: University of Bern


ncbi_organism_name: Mycolicibacterium aubagnense

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Vibrio bathopelagicus

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Lubbock

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas Tech University


ncbi_assembly_name: Rumen uncultured genome RUG11012

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Mycobacterium sp. SA01

ncbi_submitter: Rochester Institute of Technology


ncbi_country: Poland: Czeladz

ncbi_isolation_source: wound

ncbi_organism_name: Providencia stuartii

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Kenya

ncbi_organism_name: Treponema sp. UBA1635

ncbi_submitter: University of Queensland


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: USA: Minnesota

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MN 38

ncbi_submitter: USDA-ARS


ncbi_country: China: Shenzhen

ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: SciBear LLC


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Winogradskyella sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Thermanaerothrix sp.


ncbi_organism_name: Helicobacter pylori SA45C

ncbi_submitter: MHH


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled pig faecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Alabama

ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: France: Rennes

ncbi_isolation_source: nose

ncbi_submitter: University of Rennes 1


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG11

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Heliobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Candidatus Enterocola sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Enterocola;x__unclassified Candidatus Enterocola;s__Candidatus Enterocola sp.


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Candidatus Onthomorpha sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Onthomorpha;x__unclassified Candidatus Onthomorpha;s__Candidatus Onthomorpha sp.


ncbi_organism_name: uncultured Comamonadaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: uncultured Rhodomicrobium sp.


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Synechococcaceae cyanobacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Yantai University


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolate: Human

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Human

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_country: Japan: Toyama

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0180R

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: stool samples

ncbi_organism_name: Enterococcus caccae

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Megasphaera sp.


ncbi_country: Switzerland

ncbi_isolation_source: milk products

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Brigham Young University


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Czech Academy of Science


ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: University College Cork


ncbi_isolation_source: gut

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces sp. NPDC023838

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sciensano


ncbi_country: South Korea: Ulleung Island

ncbi_isolation_source: sea water

ncbi_organism_name: Pontibacter cellulosilyticus

ncbi_submitter: Dongguk University


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: Animal and Plant Health Agency


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Russia: Samara

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Spain: Asturias

ncbi_submitter: University of Oviedo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Pseudoxanthomonas sp. 10H

ncbi_submitter: Guangxi University of Science and Technology


ncbi_organism_name: Burkholderia cenocepacia HI2424

ncbi_submitter: US DOE Joint Genome Institute


ncbi_isolation_source: a small marine red alga

ncbi_organism_name: Aquicoccus porphyridii

ncbi_submitter: Ocean University of China


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Yellowstone Nation Park; Wyoming

ncbi_isolation_source: Obsidian Pool (OP) in the Mud Volcano region

ncbi_organism_name: Chlorobaculum sp. MV4-Y

ncbi_submitter: Montana State University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Mycoplasmatota bacterium zrk1

ncbi_submitter: Institute of oceanology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__unclassified Mycoplasmatota;s__Mycoplasmatota bacterium zrk1


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Streptomyces melanogenes

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Australia: New South Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1470 from squamous cell carcinomas patient MST012

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Queensland


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_country: United Kingdom: Staffordshire

ncbi_organism_name: Pseudomonas gessardii

ncbi_submitter: NIAB East Malling Research


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: EPFL


ncbi_country: USA

ncbi_isolation_source: fecal composite of dairy cows

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Corynebacterium sp. 209RC1

ncbi_submitter: Wageningen University and Research


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_country: Brazil: Brasilia

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Embrapa Genetic Resources and Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces nojiriensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2011EL-2288


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute for Epidemiology


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Italy

ncbi_isolation_source: ready to eat food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_organism_name: Staphylococcus sp. FSL W8-1291

ncbi_submitter: Penn State


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Candidatus Roizmanbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;x__unclassified Candidatus Roizmanbacteria;s__Candidatus Roizmanbacteria bacterium


ncbi_assembly_name: freshwater MAG --- Ja2-D2_bin-0994

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Ruminococcaceae bacterium UBA1785

ncbi_submitter: University of Queensland


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Belem

ncbi_submitter: LNCC


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_submitter: ASCENSION


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Centre International de Recherche en Infectiologie


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Firmicutes bacterium UBA6256

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA6256


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- LaPlata-7m-b_bin-567


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp13 AA73

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp13 AA73

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 7d patty soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Peking university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: JL

ncbi_submitter: Enze Hospital


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: rock

ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Erysipelotrichales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Capnocytophaga sp.


ncbi_organism_name: uncultured Veillonella sp.


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: LAPOA-Federal University of Paraiba (UFPB)


ncbi_country: Norway: Bergen

ncbi_isolation_source: pus

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: BNH

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: New Zealand: Tikitere

ncbi_isolation_source: hot spring sediment (ARC_TD2)

ncbi_submitter: The University of Auckland


ncbi_country: South Africa: King Dinuzulu Hospital

ncbi_isolation_source: sputum

ncbi_submitter: Broad Institute


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Maroochydoore River

ncbi_organism_name: Betaproteobacteria bacterium UBA6904

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Chlamydia trachomatis D/SotonD6

ncbi_submitter: Sanger Institute


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Green_V_5

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Universite de Sherbrooke


ncbi_isolation_source: marine

ncbi_organism_name: Pseudomonas sp.


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lejia lagoon

ncbi_isolation_source: soil alkaline flat

ncbi_organism_name: Halomonas sp.

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_assembly_name: freshwater MAG --- Loc090116-9m_bin-1382

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC102274

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: India: Karnataka

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Hungary

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: USDA-ARS


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: the coast of Xiamen; Fujian Province

ncbi_isolation_source: a marine limpet

ncbi_organism_name: Notoacmeibacter marinus

ncbi_submitter: Zhaobin Huang


ncbi_country: Thailand

ncbi_organism_name: Leptospira interrogans str. UT126

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Brazil

ncbi_isolation_source: Conjunctiva

ncbi_organism_name: Acinetobacter courvalinii

ncbi_strain_identifiers: NIPH 1847

ncbi_submitter: Broad Institute


ncbi_organism_name: Mannheimia indoligenes

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Washington University in St. Louis


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Agrotis puta


ncbi_submitter: Centre for Microbiome Research


ncbi_country: India: Unique Biotech Limited; Hyderabad

ncbi_isolation_source: Healthy Infant Feces

ncbi_organism_name: Lacticaseibacillus casei

ncbi_submitter: Unique Biotech Limited