ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Universite de Montreal


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Acinetobacter junii


ncbi_assembly_level: Contig

ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium pullorum;sb__Bifidobacterium pullorum subsp. saeculare;x__Bifidobacterium pullorum subsp. saeculare DSM 6531 = LMG 14934

ncbi_type_material_designation: assembly from type material


ncbi_country: Spain: Bizkaia

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Qinghai Province

ncbi_isolation_source: trachea

ncbi_organism_name: Aerococcaceae bacterium zg-BR33

ncbi_submitter: China CDC


gtdb_representative: t

ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: milk

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: China Agricultural University


ncbi_country: India: Karnataka; Karwar

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Consortia research platform on Vaccines and Diagnostics


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Georgia


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Thailand: Ranong

ncbi_isolation_source: water

ncbi_organism_name: Donghicola mangrovi

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Granulicatella adiacens


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Arcobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Psychrobacter sp.


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE


ncbi_isolation_source: diseased redbanded seabream

ncbi_organism_name: Photobacterium aquimaris

ncbi_strain_identifiers: CECT 9191

ncbi_submitter: UVEG


ncbi_isolate: metabat2_coassembly_bwa.182 MAG

ncbi_strain_identifiers: metabat2_coassembly_bwa.182 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Facklamia hominis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Toho University


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1189

ncbi_submitter: Broad Institute


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: CAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Streptococcus agalactiae FSL S3-090

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


gtdb_type_species_of_genus: t

ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Peribacillus;s__Peribacillus simplex;x__Peribacillus simplex NBRC 15720 = DSM 1321


ncbi_organism_name: Streptomyces rameus

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Antarctica

ncbi_isolation_source: MtG22-5 sample; Antarctic (ecotone) soil

ncbi_organism_name: Chitinophagales bacterium 65-1

ncbi_submitter: Centre for Microbial Ecology and Genomics, University of Pretoria,

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__unclassified Chitinophagales;s__Chitinophagales bacterium 65-1


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Georgia


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Parabacteroides distasonis CL09T03C24


ncbi_organism_name: Klebsiella sp. JB_Kp021

ncbi_submitter: Max Rubner-Institut


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: Eye swab

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Odense University Hospital, Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Labbmm Biomol Group


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Pseudomonas kribbensis

ncbi_submitter: National Taiwan University


ncbi_organism_name: Enterococcus sp. DIV0755f

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Microbacterium sp. NPDC055910

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Dialister invisus


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Taiwan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Paraburkholderia strydomiana

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Salmonella sp. C3231

ncbi_submitter: Sichuan University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tsinghua University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Shandong University


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Anaerosacchariphilus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Kidney

ncbi_organism_name: Leptospira inadai serovar Lyme

ncbi_submitter: School of Veterinary Medicine and Animal Science / University of Sao Paulo


ncbi_organism_name: Gilliamella sp. CG33


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Human

ncbi_organism_name: Bacillus marasmi

ncbi_submitter: URMITE


ncbi_country: India

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Thailand: Phitsanulok

ncbi_isolation_source: blood

ncbi_submitter: Kasetsart University


ncbi_country: Brazil

ncbi_isolation_source: chicken carcass

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridium sp.

ncbi_submitter: AAFC


ncbi_country: USA: Durham; NC

ncbi_isolation_source: ETS

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Alabama in Huntsville


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: France: Strasbourg

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_assembly_level: Chromosome

ncbi_organism_name: Nostoc sp. NIES-2111

ncbi_submitter: Toyohashi University of Technology


ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Imported frozen meat

ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_assembly_name: Salmonella enterica CVM N29313-SQ v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Norway

ncbi_isolation_source: Blood culture

ncbi_submitter: St. Olav University Hospital


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobacterium lactis

ncbi_submitter: Kyungpook National University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 44362_5

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_name: freshwater MAG --- MJ-2014-D3_bin-256

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: NanJing University


ncbi_organism_name: Neisseria sp. P0003.S003

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Polaribacter sp. PL03

ncbi_submitter: Ulsan National Institute of Science and Technology


ncbi_assembly_name: IMG-taxon 2616644809 annotated assembly

ncbi_organism_name: Cytophaga hutchinsonii ATCC 33406

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Cytophagaceae;g__Cytophaga;s__Cytophaga hutchinsonii;x__Cytophaga hutchinsonii ATCC 33406


ncbi_assembly_name: De novo assembly of KCRI isolate RDK02_116

ncbi_isolation_source: wound swab sample

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University Graduate School of Medicine


ncbi_assembly_name: Salmonella enterica CVM N45390 v1.0

ncbi_country: USA: GA

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Streptomyces sp. NPDC008141

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG12827

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Comamonadaceae bacterium UBA3399

ncbi_submitter: University of Queensland


ncbi_country: Switzerland

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Bern


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Australia: Newcastle

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: IMG-taxon 2654588102 annotated assembly

ncbi_organism_name: Bradyrhizobium sp. Rc2d


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Streptococcus canis

ncbi_submitter: University of Glasgow


ncbi_organism_name: Enterococcus xiangfangensis

ncbi_submitter: Shandong University


ncbi_organism_name: Escherichia sp. MOD1-EC4550

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV133

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: AAFC


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Italy: Udine

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_country: USA: California

ncbi_isolation_source: rectal swab from healthy college student

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_country: India

ncbi_submitter: Christian Medical College


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_submitter: Savitribai Phule Pune University


ncbi_country: Germany

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: University of Tuebingen


ncbi_isolate: Pseudomonas sp. 9Ag

ncbi_organism_name: Pseudomonas sp. 9Ag

ncbi_strain_identifiers: Pseudomonas sp. 9Ag

ncbi_submitter: Elham Karimi


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M984

ncbi_submitter: Broad Institute


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Phycisphaerae bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__environmental samples;s__uncultured Phycisphaerae bacterium


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of York


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JPIAMR ARMIS


ncbi_isolate: AOP24_D1_surf _bin _17

ncbi_organism_name: Leuconostoc falkenbergense

ncbi_strain_identifiers: AOP24_D1_surf _bin _17

ncbi_submitter: Genoscope


ncbi_assembly_name: Ihuella massiliensis

ncbi_organism_name: Ruminococcaceae bacterium cv2

ncbi_submitter: URMITE


ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Aequorivita sp.

ncbi_submitter: McGill University


ncbi_assembly_name: freshwater MAG --- AM4_bin-640

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: Denmark

ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_strain_identifiers: NCPPB 312

ncbi_submitter: Food and Environment Research Agency


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: EPFL


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Gladstone Institutes


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Wolbachia endosymbiont of Lasioglossum morio

ncbi_submitter: Georg-August-University Goettingen


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- KT1_bin-368

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_assembly_name: freshwater MAG --- KT3_bin-576

ncbi_organism_name: uncultured Rhodospirillales bacterium


ncbi_organism_name: Chlamydia trachomatis

ncbi_strain_identifiers: KANU:L2 CT333::Tn

ncbi_submitter: University of Kansas


ncbi_organism_name: Neisseria polysaccharea


ncbi_country: Russia

ncbi_isolation_source: soil

ncbi_organism_name: Paraburkholderia phytofirmans OLGA172

ncbi_submitter: University of Toronto Scarborough


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: uncultured Synechococcus sp.


ncbi_submitter: FDA/CDC


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pseudomonas sp. UBA5706

ncbi_submitter: University of Queensland


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Shenzhen

ncbi_organism_name: Lachnospira eligens

ncbi_submitter: BGI


ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: Italy

ncbi_isolation_source: rice rhizosphere

ncbi_organism_name: Pseudomonas sp. 67(2021)

ncbi_submitter: International Centre for Genetic Engineering and Biotechnology (ICGEB)


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Luzhou

ncbi_isolation_source: sputum

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_country: Argentina

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Stockholm University


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-05944

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: USA: Lake Erie

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Michigan


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S25

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Rhodospirillaceae bacterium


ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_strain_identifiers: TFHFJT

ncbi_submitter: INRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Oscillospiraceae bacterium WX1

ncbi_submitter: Shenyang Institute of Applied Ecology, Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Erasmus University Medical Center


ncbi_country: China: Beijing

ncbi_organism_name: Serratia rubidaea

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: India

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_organism_name: Egibacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Kordiimonadaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Planktothrix sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Paraglaciecola sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Canada: Ontario

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 94-1

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Legionella quateirensis

ncbi_strain_identifiers: Thacker 1335

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. BF23-19

ncbi_submitter: SciBear OU


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Sphingobacterium bovisgrunnientis


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Porticoccaceae bacterium UBA2002

ncbi_submitter: University of Queensland


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Kitchen B

ncbi_organism_name: Tatumella sp. JGM82

ncbi_submitter: Cornell University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: Mali

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Norway

ncbi_isolation_source: fish gut

ncbi_organism_name: Shewanella baltica

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Georgia Tech


ncbi_isolation_source: Lymph nodes

ncbi_organism_name: Streptococcus porcinus


ncbi_organism_name: Rhodocyclaceae bacterium


ncbi_organism_name: Coprococcus comes


ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Pseudomonas psychrophila

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of Bern


ncbi_organism_name: Halobacteriovorax sp. HFRX-2_2

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-657

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: human

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Texas Tech University


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Centers for Disease Control, Taiwan


ncbi_organism_name: Dickeya chrysanthemi

ncbi_submitter: Cornell University


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Enterococcus innesii

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Trebonia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mycobacterium malmoense

ncbi_submitter: Research Institute of Tuberculosis


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: CRN 29

ncbi_submitter: CSIR-National Environmental Engineering Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia: Medellin

ncbi_isolation_source: teeth

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Universidad de Antioquia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ATCC BAA2146

ncbi_submitter: Michigan Department of Health and Human Services


ncbi_country: USA: Los Angeles

ncbi_submitter: UCLA Clinical Microbiology Laboratory


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: NCPPB 3883

ncbi_submitter: University of Exeter


ncbi_isolation_source: Distal colon


ncbi_country: Kazakhstan: Almaty

ncbi_isolation_source: Swab from Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Scientific Center for Anti-infectious Drugs (SCAID)


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: cold seep

ncbi_organism_name: Filomicrobium sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Hunan University


ncbi_organism_name: Cytobacillus pseudoceanisediminis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Beijing

ncbi_isolation_source: Prostatic fluid

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_organism_name: uncultured Pseudoalteromonas sp.

ncbi_submitter: EMG


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Colorado at Boulder


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: feces


ncbi_organism_name: Bacillus sp. FSL R5-0654

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R5-0654


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-04642

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 40cm depth; 6 days after first rain event (27mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_isolation_source: marine

ncbi_organism_name: Thalassospira sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: TCI Co., Ltd.


ncbi_organism_name: Candidatus Phytoplasma vignae

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrIX (Pigeon pea witches'-broom group);s__Candidatus Phytoplasma vignae


ncbi_organism_name: Curtobacterium sp. 18060

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_country: Nigeria

ncbi_isolation_source: Clinical wounds

ncbi_organism_name: Escherichia coli

ncbi_submitter: Igbinedion University Okada


ncbi_country: Denmark

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter asburiae

ncbi_strain_identifiers: AMA 497

ncbi_submitter: Anette M. Hammerum


ncbi_organism_name: Clostridium sp. ATCC BAA-442

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Streptococcus agalactiae LMG 15090

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon mucosa

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Nocardia rhamnosiphila

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Iran

ncbi_organism_name: Spiroplasma citri

ncbi_submitter: shiraz university


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: USA: Yellowstone Lake; WY

ncbi_organism_name: Mesorhizobium sp. YL-MeA3-2017

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Legionella sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Alloprevotella tannerae ATCC 51259

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Alloprevotella;s__Alloprevotella tannerae;x__Alloprevotella tannerae ATCC 51259


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica bacterium RIFCSPLOWO2_12_FULL_50_11


ncbi_country: India

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_strain_identifiers: CEMTC 2142

ncbi_submitter: Institute of Chemical Biology and Fundamental Medicine- SB RAS


ncbi_submitter: Universidad San Francisco de Quito


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Georgia

ncbi_isolation_source: blood

ncbi_organism_name: Streptomyces sp. 15-116A

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;o__Candidatus Absconditabacterales;x__unclassified Candidatus Absconditabacterales;s__Candidatus Absconditabacterales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_country: Belgium: Antwerp

ncbi_isolation_source: Oropharinx

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Propionibacterium australiense

ncbi_submitter: WUR


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Desulfotomaculum sp. OF05-3

ncbi_submitter: BGI


ncbi_country: China: Yancheng

ncbi_isolation_source: Farm

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured Halomonas sp.


ncbi_organism_name: Sporomusaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: Chicken skin

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: sausage

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Companilactobacillus;s__Companilactobacillus farciminis;x__Companilactobacillus farciminis KCTC 3681 = DSM 20184


ncbi_assembly_name: Staphylococcus aureus SH2

ncbi_submitter: UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA


ncbi_country: Czech Republic

ncbi_isolation_source: bodily cavity

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_assembly_name: Rumen uncultured genome RUG14389

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: University of Galway


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Psychroflexus sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Zymobacter sp. IVIA_12111.31 C1

ncbi_submitter: Institito Valenciano de Investigaciones Agrarias (IVIA)


ncbi_organism_name: Rahnella aceris

ncbi_submitter: USDA Stop the rot


ncbi_organism_name: Parabacteroides merdae


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Puniceispirillales bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__Candidatus Puniceispirillales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D1_bin-0425

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Stockholm University


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Aquipseudomonas alcaligenes

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Halobacillus trueperi

ncbi_strain_identifiers: KCTC 3686

ncbi_submitter: ChunLab


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: freshwater MAG --- Umea1_bin-0121

ncbi_organism_name: uncultured Acidobacteriia bacterium


ncbi_isolation_source: coastal sediment

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: uncultured Treponemataceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human skin

ncbi_organism_name: Mycolicibacterium bacteremicum

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Acetomicrobium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidocella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Ureaplasma urealyticum

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter bacterium nBUS_29


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cepheid


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_organism_name: Bradyrhizobium yuanmingense

ncbi_strain_identifiers: USDA 274

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Shigella flexneri K-227

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_country: United Kingdom: Cockle Park Experimental Farm

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces drozdowiczii

ncbi_submitter: Newcastle University


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_submitter: Swiss Tropical and Public Health Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Glacieibacterium frigidum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces hokutonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: USA: CA

ncbi_isolation_source: lung turkey (Meleagris gallopavo)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Trichococcus paludicola

ncbi_submitter: Chengdu Institute of Biology,Chinese Academy of Sciences


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Auritidibacter sp. Marseille-P8566

ncbi_submitter: Biology Centre CAS


ncbi_country: Greece: Athens

ncbi_isolation_source: Soil particles attached to eggplant roots

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Centro de Ciencias Genomicas - Universidad Nacional Autonoma de Mexico


ncbi_country: Brazil: Tatui

ncbi_isolation_source: Cecum and rectal contents from Capybaras

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: Brazilian Center for Research in Energy and Materials (CNPEM)


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering-College, PIEAS


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: Kenya

ncbi_isolation_source: camelid milk; raw single animal long storage

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ETH Zurich


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 44327_5

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITE CLERMONT AUVERGNE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: mastitic milk

ncbi_strain_identifiers: KP IMI 190

ncbi_submitter: UNICAMP


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2137

ncbi_submitter: Broad Institute


ncbi_organism_name: Alteracholeplasma palmae J233

ncbi_submitter: MPIMG


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nanjing Municipal Center for Disease Control and Prevention


ncbi_country: Taiwan: Dayuan District; Taoyuan City

ncbi_organism_name: Periwinkle leaf yellowing phytoplasma

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrI (Aster yellows group);s__Periwinkle leaf yellowing phytoplasma


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 169

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: throat

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Michigan


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Joint Microbiome Facility

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces lavendulae

ncbi_submitter: Jiangxi Agricultural University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Clemson University


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: USDA ARS


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Teagasc


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter freundii complex sp. 2024EL-00241


ncbi_organism_name: Pseudomonas boreofloridensis

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Rennes


ncbi_organism_name: uncultured Enterococcus sp.


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Halobacteriovorax sp. RT-1-1

ncbi_submitter: Shandong University at Weihai


ncbi_country: China: Hong Kong

ncbi_isolation_source: biofilm full-scale rotating biological contactor (RBC)

ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: MD

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: National Health Research Institutes


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Java


ncbi_country: Oman

ncbi_submitter: Sultan Qaboos University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: China: Shanghai

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Mobiluncus curtisii

ncbi_submitter: EMG


ncbi_country: Egypt

ncbi_isolation_source: Raw milk cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Hymenobacter segetis

ncbi_submitter: Seoul Women's University


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: colon

ncbi_organism_name: Turicimonas muris

ncbi_submitter: University of Vienna


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Streptococcus suis YB51

ncbi_submitter: China Animal Health and Epidemiology Center


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Toho University


ncbi_organism_name: Rhodococcus baikonurensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Maywood; IL

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Enterococcus faecalis T3

ncbi_submitter: Broad Institute


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Acidovorax sp. FHTAMBA

ncbi_strain_identifiers: FHTAMBA

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_country: China: Shandong

ncbi_isolation_source: fecal swabs from commercial chicken farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_country: USA: Florida; Fort Pierce

ncbi_isolation_source: Citrus rhizosphere

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: University of Florida


ncbi_country: India

ncbi_organism_name: Xanthomonas citri pv. durantae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. durantae


ncbi_organism_name: Vibrio cholerae

ncbi_strain_identifiers: CECT 514


ncbi_submitter: Geneva University Hospitals


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolate: VTEC

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Rifleibacteriota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rifleibacteriota;x__unclassified Candidatus Rifleibacteriota;s__Candidatus Rifleibacteriota bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Delongbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Delongiibacteriota;x__unclassified Candidatus Delongbacteria;s__Candidatus Delongbacteria bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Lebanon

ncbi_isolation_source: clinical

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University


ncbi_country: Pakistan


ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei 3226-85

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Kenya

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: France

ncbi_isolation_source: raw milk

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: CIRM-BIA 1973

ncbi_submitter: Brigham Young University


ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bartonella sp. OC41QHQL

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Metamycoplasma sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S24

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: Germany

ncbi_organism_name: Pseudomonas sp. WS 5414

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Bulgaria: Melnik

ncbi_isolate: CALKRU

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: CALKRU

ncbi_submitter: Piotr Lukasik

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: Akkermansia muciniphila


ncbi_assembly_name: IMG-taxon 2684622848 annotated assembly

ncbi_organism_name: Pseudovibrio axinellae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Hangzhou

ncbi_submitter: Jinhua Central Hospital


ncbi_country: Spain: Granada

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Seville


ncbi_organism_name: Proteus sp. G4415

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4415


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_submitter: Technical University of Denmark


ncbi_country: Sweden: Kalmar

ncbi_isolation_source: Antrum and Corpus

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: MRC CLIMB


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Ohio

ncbi_isolation_source: Alimentary canal

ncbi_organism_name: Dysgonomonas sp. 511

ncbi_submitter: The Ohio State University


ncbi_country: Canada: Quicksilver from Bowden; Alberta

ncbi_isolation_source: lab enrichment culture in anaerobic medium

ncbi_organism_name: Clostridium sp. HMP27

ncbi_submitter: Hydrocarbon Metagenomic Project


ncbi_organism_name: Clostridioides sp. ES-S-0056-01

ncbi_submitter: Northern Arizona University


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Michigan


ncbi_country: Japan

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: GUATP 221

ncbi_submitter: Applied Biological Science, Gifu University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South Dakota State University


ncbi_country: Australia: SA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_assembly_name: BTURTLESOX

ncbi_isolate: BTURTLESOX

ncbi_isolation_source: gill tissue

ncbi_strain_identifiers: BTURTLESOX

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__unclassified Bacteria;s__bacterium endosymbiont of Bathymodiolus sp. 5 South


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agricultural Sciences (CAAS)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Cellvibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Duganella sp. P38

ncbi_submitter: The University of Sydney


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: The University of Melbourne


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Huzhou CDC


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Yellowstone National Park

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Germany: Hesse; Giessen

ncbi_isolation_source: throat swab

ncbi_organism_name: Raoultella planticola

ncbi_submitter: Justus-Liebig-University Giessen


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bosea robiniae


ncbi_assembly_name: Rumen uncultured genome RUG141

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Hahellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Fuzhou

ncbi_isolation_source: health tissues

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Fujian Agriculture and Forestry University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_assembly_name: freshwater MAG --- Loclat_bin-07289

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pirellula sp.

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University Huashan Hospital


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- KR2_bin-0113

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Montana

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: China: Guangzhou

ncbi_isolation_source: forest soil

ncbi_organism_name: Dyella sp. 2HG41-7

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Colon

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Salmonella enterica


ncbi_country: China: Shandong

ncbi_isolation_source: commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin44

ncbi_strain_identifiers: HIE bin44

ncbi_submitter: Monash University


ncbi_country: USA: MD

ncbi_organism_name: Bacillus cereus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Methylopumilus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1036


ncbi_country: Antarctica

ncbi_organism_name: Simplicispira psychrophila DSM 11588

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: India: Madhya Pradesh; Sehore; Mographool

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Spain

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: ITQB NOVA


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Slackia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Thailand: Nan

ncbi_isolation_source: rectal swab

ncbi_submitter: Faculty of Public Health


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: India: Vellore

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC1544

ncbi_submitter: Christian Medical College


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Candidatus Tisiphia;x__unclassified Candidatus Tisiphia;s__Candidatus Tisiphia endosymbiont of Nemotelus uliginosus


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: Monash University


ncbi_country: Australia: WA; Brokton

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. BR1-1-6

ncbi_submitter: Curtin University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Pseudomonas aeruginosa PA103

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Tree-bark compost from biofilters

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Pseudonocardiales;f__Pseudonocardiaceae;g__Pseudonocardia;s__Pseudonocardia asaccharolytica;x__Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224


ncbi_organism_name: Psychrobacter sp. HY3-MNA-CIBAN-0198

ncbi_submitter: University of Florence


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Isolate 11

ncbi_submitter: University of Siena


ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: Institute of Applied Ecology, Chinese Academy of Sciences


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_country: Italy

ncbi_isolation_source: chicken salad

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Canada: Vancouver

ncbi_isolation_source: eye infection

ncbi_organism_name: Corynebacterium macginleyi

ncbi_submitter: National Microbiology Laboratory


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis;x__Streptococcus dysgalactiae subsp. equisimilis SK1249


ncbi_country: China: Chengdu

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Kluyvera georgiana

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_country: India: North Guwahati Town; Guwahati; Assam

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: India: Jetpur; Gujarat

ncbi_isolation_source: Textile industry effluent

ncbi_organism_name: Geovibrio sp.

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sagittula sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: vaginal metagenome


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: China: Yunnan

ncbi_organism_name: Proteus faecis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL020208

ncbi_submitter: Broad Institute


ncbi_country: China: Shenzhen Guangdong

ncbi_isolation_source: sputum from old man

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Xiehe Shenzhen Hospital of Huazhong University of Science and Technology


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium GW2011_GWA1_37_16


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Zhejiang University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Lederbergia lenta

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: OM182 bacterium

ncbi_submitter: Institut de Ciencies del Mar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;s__OM182 bacterium


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: University of Parma


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC057675

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolate: AOP35_03-ete_surf _bin _8

ncbi_organism_name: Alkalibacterium gilvum

ncbi_strain_identifiers: AOP35_03-ete_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Lachnobacterium sp.


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Montana State University


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF36-4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Scardovia wiggsiae

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_organism_name: Candidatus Agathobaculum merdipullorum

ncbi_submitter: Quadram Institutte


ncbi_country: Netherlands

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Aberdeen


ncbi_country: USA: Texas

ncbi_isolation_source: bovine feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Latilactobacillus sakei

ncbi_strain_identifiers: TMW 1.3

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Brazil:Sao Paulo

ncbi_isolation_source: food

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: AATZI

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Rochester Institute of Technology


ncbi_country: Ghana: Northern region

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Noguchi Memorial Institute fir Medical Research


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_organism_name: Thermoanaerobacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Christensenellales bacterium


ncbi_country: China: Henan

ncbi_submitter: China Agricultural University


ncbi_country: China: Shanghai

ncbi_isolation_source: activated sludge

ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Donghua University


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Quaid i Azam University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Centre International de Recherche en Infectiologie


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: EPFL


ncbi_country: Greece: Crete

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas sp. CM27

ncbi_submitter: University of Exeter


ncbi_isolation_source: Human saliva

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: EMG


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Dietzia sp.