ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Phocaeicola barnesiae

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_level: Contig

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: URMITE


ncbi_country: Russia

ncbi_isolation_source: intestine contents

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kuban State Agrarian University


gtdb_representative: t

ncbi_organism_name: Pontiella sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCBD17_034

ncbi_submitter: University of California, Irvine


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Lwoffella lincolnii

ncbi_refseq_category: reference genome

ncbi_submitter: The University of Western Australia


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Yonsei University


ncbi_isolation_source: Caecum

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_submitter: Ausgem


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Selenomonadales bacterium


ncbi_organism_name: Yersinia pestis I1991001

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Selenomonas noxia


ncbi_country: Belgium

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Processed minced meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Johannesburg


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Candidatus Intricatilinea gracilis

ncbi_submitter: Aalborg University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Rhizobium sp. ZPR3

ncbi_submitter: Fujian Normal University


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Gansu Provincial People's Hospital


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0131

ncbi_submitter: Broad Institute


ncbi_submitter: UMCG Groningen


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Salmonella sp. LSP 304/17

ncbi_submitter: University of Oviedo


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_organism_name: Streptomyces griseoincarnatus


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: CAU


ncbi_organism_name: Heyndrickxia faecalis

ncbi_submitter: Wagralim


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Venezuela

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: Throat (pharynx)

ncbi_organism_name: Chryseobacterium arthrosphaerae

ncbi_submitter: US Food and Drug Administration


ncbi_country: Spain

ncbi_isolation_source: organic material

ncbi_organism_name: Candidatus Portiera aleyrodidarum

ncbi_strain_identifiers: AD-CAI

ncbi_submitter: ICBIBE

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Johnevansiales;f__Candidatus Johnevansiaceae;g__Candidatus Portiera;s__Candidatus Portiera aleyrodidarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Johnevansiales;f__Candidatus Johnevansiaceae;g__Candidatus Portiera;s__Candidatus Portiera aleyrodidarum


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 108 - depth 500m

ncbi_organism_name: SAR324 cluster bacterium REDSEA-S27_B3

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium REDSEA-S27_B3


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Niabella sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caecimuris


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: quick-frozen food from supermarket

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Guangdong Academy of Sciences


ncbi_submitter: DTU Bioinformatics


ncbi_country: Kenya: Shimba Hills National Reserve; car-park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. SH7-1

ncbi_submitter: University of Bialystok

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus sp. SH7-1


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: freshwater MAG --- T8_bin-474

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 6-319-05_S3_C3

ncbi_submitter: IGS


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Chr. Hansen A/S


ncbi_country: Belgium

ncbi_submitter: University of Liege


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudokineococcus basanitobsidens

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_country: China: Fujian; Zijin

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_organism_name: Yersinia pseudotuberculosis IP 32953

ncbi_submitter: Lawrence Livermore National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pseudotuberculosis;x__Yersinia pseudotuberculosis IP 32953


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Cytobacillus sp. FSL W8-0315

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Cytobacillus;x__unclassified Cytobacillus;s__Cytobacillus sp. FSL W8-0315


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Syntrophothermus sp. UBA1445

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Japan: Saga Market; Kochi; Shikoku

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Hawaii-Manoa


ncbi_country: Colombia

ncbi_isolation_source: Environment

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Antioquia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Czech Academy of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Mount Pinos; Los Padres National Forest; California

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Symbiothrix sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Symbiothrix;x__unclassified Candidatus Symbiothrix;s__Candidatus Symbiothrix sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Segatella salivae

ncbi_submitter: EMG


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Salmonella bongori


ncbi_organism_name: Hungatella effluvii

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_country: China: Heihe; Heilongjiang

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium liaoningense

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Streptococcus anginosus


ncbi_country: Portugal

ncbi_isolation_source: Broiler

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_country: China

ncbi_isolation_source: seafood

ncbi_organism_name: Vibrio parahaemolyticus S142

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S142


ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_assembly_name: freshwater MAG --- KT4_bin-715

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: pickle

ncbi_organism_name: Lacticaseibacillus jixianensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: Pakistan: Khyber Pakhtunkhwa

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_organism_name: Vibrio splendidus


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of Calgary


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_assembly_name: Rumen uncultured genome RUG14593

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of New South Wales


ncbi_organism_name: Caedibacter taeniospiralis

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Paraburkholderia graminis

ncbi_submitter: Washington State University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE)


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad Nacional Autonoma de Mexico. Centro de Ciencias Genomicas


ncbi_organism_name: Salmonella sp. ZJHZ21_0177

ncbi_submitter: Zhejiang university


ncbi_organism_name: Microtetraspora malaysiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Flavobacterium artemisiae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Alistipes communis


ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Aeribacillus composti

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Laval University


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: USA

ncbi_isolation_source: surgical intestinal biopsy

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Human Microbiology Institute


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Dialister hominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Tanzania

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Ki1-2-2m_bin-339

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: China: Shenzhen

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: BGI-Shenzhen


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfurellales bacterium

ncbi_submitter: Portland State University


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus IS-122


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_submitter: University of Zurich


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus M54162

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Right leg wound

ncbi_organism_name: Proteus vulgaris

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: USA: CA

ncbi_isolation_source: nectarine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Hellea sp.

ncbi_submitter: Monash University


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA769

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA769


ncbi_country: Spain: Madrid

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: McGill University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_organism_name: Turicimonas muris


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_assembly_name: IMG-taxon 2623620513 annotated assembly

ncbi_organism_name: Clostridium cadaveris

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: St. Joseph; Minnesota

ncbi_isolation_source: standing water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_level: Chromosome

ncbi_country: USA: Florida Keys

ncbi_isolation_source: marine sponge Aplysina fulva

ncbi_organism_name: Microbulbifer sp. MLAF003

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured bacterium


ncbi_country: India: Chandigarh

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Dominican Republic: Azua

ncbi_organism_name: Bradyrhizobium pachyrhizi

ncbi_submitter: Universidad de Salamanca


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: butyrate-producing bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Spain: Santander

ncbi_isolation_source: sputum

ncbi_submitter: ITACYL


ncbi_country: Antarctica: Mackay Glacier regions; Mackay Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Italy

ncbi_isolation_source: raw milk cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics GmbH


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA5100

ncbi_submitter: University of Queensland


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Spain: fish farm

ncbi_isolation_source: Oncorhynchus mykiss

ncbi_organism_name: Flavobacterium piscis


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Niangziguang; Shanxi

ncbi_isolate: NZG

ncbi_organism_name: Methylibium sp. NZG

ncbi_strain_identifiers: NZG

ncbi_submitter: Ocean University of China


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EBI


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Colimorpha pelethequi

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Colimorpha;s__Candidatus Colimorpha pelethequi


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: not provided

ncbi_organism_name: Tannerella forsythia

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lachnospira pectinoschiza

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Russia: Borehole near Beyelii Yar in Tomsk

ncbi_isolation_source: groundwater filtered on 0.22 m filters

ncbi_organism_name: Desulfovirgula sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from transplant house

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Brazil

ncbi_isolation_source: meat

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Latilactobacillus curvatus


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0905

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Alberta

ncbi_isolation_source: throat

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_country: Canada: Ontario

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: Colombia: Narino

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Narino


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Undibacterium sp.

ncbi_submitter: EPFL


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA4369

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4369


ncbi_organism_name: Rothia aeria

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Streptococcus agalactiae CCUG 37736

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: Garcinia morella leaf

ncbi_organism_name: Pantoea sp. ME81

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Belgium

ncbi_isolation_source: anal swabs and chronic otitis externa

ncbi_organism_name: Enterococcus canis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


gtdb_type_species_of_genus: t

ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Litchfieldia alkalitelluris


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: CAU


ncbi_assembly_name: freshwater MAG --- MJ120702A_bin-930

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B301;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_isolation_source: tissue

ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Resphera Biosciences


ncbi_country: France

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Pseudomonas putida S13.1.2

ncbi_submitter: UNIVERSITY OF MALAYA


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Genomics


ncbi_organism_name: Duncaniella muris


ncbi_country: Canada: High River

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: marine ANAMMOX bioreactor

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: KAUST


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolate: AOP29_A1_coeur _bin _5

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: AOP29_A1_coeur _bin _5

ncbi_submitter: Genoscope


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sorangium sp. So ce119

ncbi_strain_identifiers: So ce119

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce119


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UAEU


ncbi_submitter: Uliege - Faculty of Veterinary Medicine


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Milan


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. ALB3

ncbi_submitter: Laboratoire de Biotoxicologie , Pharmacognosie et valorisation biologique des plantes


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: The Jackson Laboratory


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_organism_name: Nitrospirae bacterium RBG_16_43_11

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium RBG_16_43_11


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Copenhagen


ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: The University of Adelaide


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Salmonella sp. NW285

ncbi_submitter: Sichuan University


ncbi_organism_name: Acidithiobacillus sulfuriphilus

ncbi_strain_identifiers: QBS 2

ncbi_submitter: Central South University


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: anammox sludge collected from membrane bioreactor

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Water quality control, Division of Environmental Engineering, Faculty of Engineering, Department of civil engineering, Hokkaido university


ncbi_isolation_source: human milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: URMITE


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_country: USA: Colorado

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Ramlibacter montanisoli

ncbi_submitter: CHUNG ANG UNIVERSITY


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: tissue sample

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Lachnoanaerobaculum sp.


ncbi_organism_name: Romboutsia sp. 1001216sp1

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Sharpea azabuensis

ncbi_submitter: McGill University


ncbi_country: Norway

ncbi_isolation_source: Pig

ncbi_organism_name: Escherichia coli

ncbi_submitter: NORWEGIAN VETERINARY INSTITUTE


ncbi_organism_name: Klebsiella sp. 98340

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Atopococcus tabaci

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: water

ncbi_organism_name: Marinomonas aquimarina

ncbi_strain_identifiers: CECT 5080

ncbi_submitter: UVEG


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Leptotrichia trevisanii

ncbi_submitter: Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_country: Saudi Arabia: Riyadh Armed Forces Hospital; Riyadh

ncbi_organism_name: Acinetobacter baumannii R1B

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_assembly_name: CFV

ncbi_submitter: Medizinische Universitaet Graz and Karl-Franzens Universitaet Graz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter fetus;sb__Campylobacter fetus subsp. venerealis;x__Campylobacter fetus subsp. venerealis str. 84-112


ncbi_organism_name: Salmonella sp. CQ24WZ0555SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin N2.43

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_strain_identifiers: bin N2.43

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Lacombe

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: South Korea: Seocheon

ncbi_isolation_source: gut

ncbi_organism_name: Galbitalea sp. SE-J8

ncbi_submitter: National Institute of Ecology


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Brazil: Sobradinho

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: UFMG


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Thiobacillaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: University of Chicago


ncbi_country: China: Yan an

ncbi_isolation_source: crude oil contaminated soil

ncbi_organism_name: Roseomonas sp. E05

ncbi_submitter: Yan'an University


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Oscillibacter sp. GMB15532

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Puerto Rico: Cabo Rojo

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: inserm


ncbi_country: Canada: southern Alberta feedlot

ncbi_isolation_source: feeder lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: USDA/ARS/National Animal Disease Center


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Colorado State University


ncbi_country: Germany

ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Streptococcus sp. IsoGale022

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_organism_name: Streptomyces sp. NPDC048595

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Laval

ncbi_isolation_source: The bacterial strain was isolated from a naturally-occurring; multispecies; methanol-fed biofilm; adapted in a marine system under denitrifying conditions

ncbi_organism_name: Methylophaga nitratireducenticrescens

ncbi_submitter: INRS


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Microvirga sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Brevibacterium sp. VCM10

ncbi_submitter: UNIVERSITY MALAYA


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Alteromonas australica

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University


ncbi_organism_name: uncultured Granulicatella sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG12496

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succiniclasticum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC049813


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maine


ncbi_country: Australia

ncbi_isolation_source: dairy cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: CSIRO


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomicrobium sp.

ncbi_submitter: Lund University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: USDA-ARS


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Yangzhou university


ncbi_organism_name: uncultured Syntrophorhabdus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: SPRUCE 675

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 675

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Jiahui International Hospital


ncbi_organism_name: Pseudarthrobacter sp. YAF2

ncbi_submitter: CCRP


ncbi_country: USA: South Dakota

ncbi_isolation_source: Bioreactor

ncbi_organism_name: Priestia megaterium

ncbi_submitter: MR DNA


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_assembly_name: Bosea sp. 100-5 Mut-1

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research


ncbi_organism_name: Deinococcus roseus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Arenimonas sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Enterococcus faecalis EnGen0100

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG14851

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Treponema denticola H1-T


ncbi_country: India: Madurai

ncbi_organism_name: Amycolatopsis thermoflava

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Bangladesh

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: EPFL


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Low Respiratory Tract Infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: NHS Scotland

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_country: Nigeria: Sokkoto State;Ilella

ncbi_isolation_source: ant gut

ncbi_organism_name: Burkholderia sp.

ncbi_submitter: University of Jos


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: WY

ncbi_isolation_source: prairie dog intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Denmark: Hellerup

ncbi_isolation_source: Coastal water

ncbi_organism_name: Pseudoalteromonas sp. S16_S37

ncbi_submitter: DTU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_submitter: Erciyes University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_assembly_name: Salmonella enterica CVM 43819 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Variovorax ginsengisoli

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Melbourne

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Germany: University Hospital Effluent; Greifswald

ncbi_isolation_source: wastewater

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: intestine

ncbi_submitter: Northwest A&F University


ncbi_country: France: Zellenberg

ncbi_isolation_source: soil

ncbi_organism_name: Pantoea vagans

ncbi_submitter: Kher Heng Leong


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterococcaceae bacterium UBA4140

ncbi_submitter: University of Queensland


ncbi_country: Germany

ncbi_organism_name: Levilactobacillus namurensis

ncbi_submitter: Quadram Institutte


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Anthropogastromicrobium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis OFXR-19

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hebrew University of Jerusalem


ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_country: India: Baratang Island; Andamans

ncbi_isolation_source: mud volcano

ncbi_organism_name: Lutibaculum baratangense AMV1

ncbi_submitter: Centre for Cellular and Molecular Biology


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_organism_name: Stenotrophomonas sp. TWI700

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Micromonospora echinofusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Candidatus Pampinifervens sericum

ncbi_submitter: University of Nevada, Las Vegas


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Streptomyces sp. NBC_00306

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Thomasclavelia cocleata


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: Hulun Lake

ncbi_organism_name: Methylobrevis albus

ncbi_submitter: Shandong university


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Pelagibacterales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Spain

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus ZTA11/03130-3ST

ncbi_submitter: Broad Institute


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Aestuarium sp.

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Actinomycetaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Alistipes sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Enterococcus faecalis KI-6-1-110608-1

ncbi_submitter: The Genome Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: Department of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Thiotrichaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Canada

ncbi_submitter: University of Minnesota


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: Australia: Yorketown; South Australia

ncbi_isolation_source: bacterial gall

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: Australian Government’s Cooperative Research Centres Program


ncbi_isolate: Pseudomonas sp. Irchel s3b5

ncbi_organism_name: Pseudomonas sp. Irchel s3b5

ncbi_strain_identifiers: Pseudomonas sp. Irchel s3b5

ncbi_submitter: UNIVERSITY OF ZUERICH


ncbi_organism_name: uncultured Thalassospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. I10

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. I10


ncbi_organism_name: Enterobacter huaxiensis

ncbi_strain_identifiers: Sil NS 53

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: bacterial canker of kiwi fruit

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae KW41


ncbi_country: Switzerland

ncbi_isolation_source: home of pet owner

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Zurich


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: human pus

ncbi_organism_name: Aeromonas hydrophila 145

ncbi_submitter: University of Malaya


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: Hungary

ncbi_organism_name: Bordetella bronchiseptica RB630

ncbi_submitter: JCVI


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: University of Chicago


ncbi_country: USA: Kennedy Space Center

ncbi_isolation_source: clean room in the vehicle assembly building where the viking spacecraft were assembled

ncbi_organism_name: Peribacillus glennii

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Medicine, Chiang Mai University


ncbi_organism_name: Salmonella sp. NW1105

ncbi_submitter: Sichuan University


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptomyces sp. 6N106

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Staphylococcus xylosus


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: British Columbia

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Copenhagen


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_isolation_source: meat product

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France: Paris

ncbi_organism_name: Mycobacteroides immunogenum

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Enshi

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobacterium siyangense

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Dialister sp. CAG:486

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nottingham Trent University


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Japan

ncbi_genome_category: derived from single cell

ncbi_isolation_source: This BioSample is a composited single-cell amplified genome (CoSAG) obtained by integrating the following multiple MDA SAG BioSamples: SAMN23498501; SAMN22813823; SAMN22813825; SAMN22813826; SAMN24966448; SAMN23498502

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: bitBiome, Inc.


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Intestinimonas butyriciproducens


ncbi_country: Venezuela: Distrito Capital; Municipio Libertador; Caracas

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: Lithuania

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Amphibacillus sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: wound

ncbi_organism_name: Enterobacter sp. MGH 7

ncbi_strain_identifiers: MGH 7

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH 7


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: EMG


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Tsinghua University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Megasphaera elsdenii


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Northeastern University


ncbi_country: Guatemala

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: USA: Maryland

ncbi_isolation_source: peri-anal swab

ncbi_organism_name: Escherichia coli 4552-1

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG13488

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: USDA


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Acidimicrobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2732

ncbi_submitter: University of Queensland


ncbi_country: Thailand


ncbi_assembly_name: Rumen uncultured genome RUG10453

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Gottfriedia acidiceleris

ncbi_submitter: Auburn University


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Salinispora vitiensis

ncbi_submitter: JGI


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFCSPHIGHO2_02_FULL_47_29


ncbi_country: Germany

ncbi_isolation_source: lupine-based moromi fermentation

ncbi_organism_name: Chromohalobacter canadensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Pelistega suis

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Sphingorhabdus sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Candidatus Accumulibacter sp. 66-26

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Candidatus Accumulibacter sp. 66-26


ncbi_isolation_source: Tidal flat sediment collected from the coast at Youngkwang of the Yellow Sea in South Korea

ncbi_organism_name: Roseovarius gaetbuli

ncbi_strain_identifiers: CECT 8370

ncbi_submitter: UVEG


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_submitter: Institute of Experimental Medicine


ncbi_organism_name: Mesorhizobium sp. LSJC268A00

ncbi_submitter: University of Southern California


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: INRA-MIG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: WTSI


ncbi_country: Malaysia

ncbi_isolation_source: Gastric Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Tongji University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: South Korea

ncbi_isolation_source: envrionmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Sanigen


ncbi_country: India: Ghazipur landfill; New Delhi

ncbi_isolation_source: soil of landfill site

ncbi_organism_name: Bacillus sp. ISTL8

ncbi_submitter: Jawaharlal Nehru University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ISTL8


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: FISABIO


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Cetobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Janibacter anophelis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: USA

ncbi_isolation_source: Strip loin

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: University of Chicago


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Ahrensia sp.


ncbi_organism_name: Aestuariivirga sp.

ncbi_submitter: Rutgers University


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter hepaticus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Ja_bin-1724

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Environmental Microbiology, College of Resources and Environment, Fujian Agriculture an


ncbi_organism_name: Candidatus Limiplasma merdipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma merdipullorum


ncbi_organism_name: Maricaulaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: LG

ncbi_submitter: UFMG


ncbi_submitter: The University of Texas at San Antonio


ncbi_organism_name: Alteraurantiacibacter palmitatis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Streptomyces sp. NPDC059944

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: UNIVERSIDAD AUTONOMA CHAPINGO


ncbi_organism_name: Brucella sp. SA075A

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterobacter cloacae complex sp. SHL021

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. SHL021


ncbi_organism_name: Streptomyces anulatus


ncbi_country: USA: North Dakota; Cottonwood Lake Study Area

ncbi_isolation_source: Prairie Pothole Region wetland sediments

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: The Ohio State University


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-1313

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Australia: Melbourne; Middle Park Beach

ncbi_isolation_source: beach sand

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Auckland


ncbi_country: China: Zhongguan Village

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Animal Science and Technology College,Jilin Agricultural University


ncbi_country: France: Irrigation canal at Logis Neuf

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium quasiaquaticum

ncbi_submitter: Sorbonne University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Neisseria subflava

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: Spribille Lab


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: INS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Birmingham; Alabama

ncbi_isolation_source: cervicovaginal lavage

ncbi_organism_name: Candidatus Lachnocurva vaginae

ncbi_submitter: University of Maryland Baltimore


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: Clemson University


ncbi_isolation_source: liver equine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Mexico: Queretaro

ncbi_isolation_source: coralloid root

ncbi_organism_name: Caulobacter sp. D5

ncbi_submitter: Langebio Cinvestav Irapuato


ncbi_assembly_name: Deltaproteobacteria bacterium Ga0077550

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Deltaproteobacteria bacterium Ga0077550

ncbi_submitter: University of Glasgow

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium Ga0077550


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Armatimonadetes bacterium UBA5352

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__unclassified Armatimonadota;s__Armatimonadetes bacterium UBA5352


ncbi_country: USA: South Carolina

ncbi_isolation_source: pharyngeal mucosa

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Spain: Madrid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: university of cambridge


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_assembly_name: IMG-taxon 2622736514 annotated assembly

ncbi_organism_name: Myroides profundi

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Liaoning

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: France

ncbi_submitter: CHU de Bicetre


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF15-31

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Greece:Thermopyles geothermal spring

ncbi_isolation_source: geothermal water

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: University of Thessaly


ncbi_country: China: Hainan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Rutgers University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: sputum

ncbi_organism_name: Actinomyces sp. HMSC035G02

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Lexington MA

ncbi_isolation_source: saliva

ncbi_organism_name: Moraxella sp. VT-16-12

ncbi_submitter: Human Microbiology Institute


ncbi_country: Brazil

ncbi_isolation_source: Meconium

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: France: Seyssel

ncbi_isolation_source: bulk soil

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: UMR5557 Laboratoire d'Ecologie Microbienne


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Mycolicibacterium novocastrense

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Sphingomicrobium aquimarinum

ncbi_submitter: Hohai University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Mesorhizobium sp. M0999

ncbi_submitter: Washington State University


ncbi_country: Austria: Tyrol

ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: Tyrol 4675

ncbi_submitter: Bundeswehr Insitute of Microbiology


ncbi_organism_name: Pseudodesulfovibrio indicus

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human stool

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: DOE JGI


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Oxford


ncbi_country: Australia: Adelaide

ncbi_isolation_source: cooling tower water

ncbi_organism_name: Legionella adelaidensis

ncbi_submitter: Tel Aviv University


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Deinococcus sp.

ncbi_submitter: NIH/NHGRI


ncbi_submitter: Ruijin Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: Department of Pharmacy, Shaoxing Hospital of Traditional Chinese Medicine Affiliated to Zhejiang Chi


ncbi_country: China

ncbi_organism_name: Salmonella sp. C2430

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Puerto Rico: LAS PIEDRAS

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia sp. Bp8990

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: Veterinary Research Institute


ncbi_country: South Korea: Jeju; U-do

ncbi_isolation_source: marine alga

ncbi_organism_name: Flagellimonas sp. HSM57

ncbi_submitter: Jeju National University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Pacific Ocean: off Costa Rica Margin

ncbi_isolation_source: marine sediment from IODP Expedition 334

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Delaware

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Philippines

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: Botswana: Chobe National Park

ncbi_isolation_source: liver of male wild banded mongoose

ncbi_organism_name: Mycobacterium mungi

ncbi_submitter: USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories - DBL


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 201

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: SNUC 1644

ncbi_submitter: University of Calgary


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: fermentation

ncbi_organism_name: Syntrophomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG361

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Polaribacter marinivivus

ncbi_submitter: Shantou University


ncbi_organism_name: Streptomyces nigrescens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Laboratoire de Microbiologie. University hospital Sahloul


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Salegentibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: National Research Council Canada


ncbi_organism_name: Hoeflea sp. Naph1

ncbi_submitter: Zhejiang University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Wits University


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine