ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus sp. AZ067

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Shandong University


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Maynooth University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Glutamicibacter sp. NPDC087673

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Idiomarina abyssalis

ncbi_submitter: Ocean University of China


ncbi_isolate: Proteobacteria sp. RBC013

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_strain_identifiers: Proteobacteria sp. RBC013

ncbi_submitter: UNIVERSITY OF WATERLOO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: EMG


ncbi_organism_name: Gimesia maris


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: EPFL


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rickettsia typhi

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Roseitalea sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: marine sediments of the ninth Arctic scientific expedition

ncbi_organism_name: Nocardioides sp. Arc9.136

ncbi_submitter: First Institute of Oceanography, Ministry of Natural Resources


ncbi_isolate: cow fecal

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: cow fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: BAL

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 311

ncbi_organism_name: Staphylococcus cohnii

ncbi_strain_identifiers: SNUC 5133

ncbi_submitter: University of Calgary


ncbi_country: China: Zhejiang

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Caballeronia sp. LZ016

ncbi_submitter: University of Texas at Arlington


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG13812

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: EPEC 2081

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_submitter: University of Galway


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Propionispira raffinosivorans DSM 20765

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: Rwanda: Rusizi

ncbi_submitter: University of Rwanda

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Gungdong

ncbi_submitter: South China Agricultural University


ncbi_submitter: The Roslin Institute (University of Edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;x__Bacteroidaceae incertae sedis;g__Candidatus Gallibacteroides;s__Candidatus Gallibacteroides avistercoris


ncbi_assembly_level: Chromosome

ncbi_organism_name: Leptospiria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Italy

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: uncultured Colwellia sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Minnesota

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_country: Greece

ncbi_isolation_source: urine

ncbi_submitter: UiT - The Arctic University of Norway


ncbi_country: China: Xinjiang

ncbi_isolation_source: saline sediment

ncbi_organism_name: Demequina muriae

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus Sau 46

ncbi_strain_identifiers: Sau 46

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus Sau 46


ncbi_organism_name: Salmonella sp. C3269

ncbi_submitter: Sichuan University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Hunan Agricultural Biotechnology Research Institute


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5326

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5326


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: Fusobacterium mortiferum


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: SampleU

ncbi_submitter: California Department of Public Health


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: The village Lesozavodsky; Oleny Island; Kovda Bay; Kandalaksha district; Murmansk region

ncbi_isolation_source: lake Bolshye Khruslomeny; water chemocline zone

ncbi_organism_name: Chlorobium phaeovibrioides

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Sphingomonas sp. ac-8

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Clemson University


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Government of Canada


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Olsenella sp.


ncbi_organism_name: Streptomyces sp. NPDC058832

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Klebsiella aerogenes


ncbi_organism_name: Streptomyces sp. WAC05950

ncbi_submitter: McMaster University


ncbi_organism_name: Mycoplasma mycoides subsp. mycoides

ncbi_strain_identifiers: Fatick

ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. mycoides


ncbi_country: China: Taizhou

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Czech Republic

ncbi_isolate: Bordetella pertussis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_strain_identifiers: BP312;Bordetella pertussis

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences, v.v.i.


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EBI


gtdb_type_species_of_genus: t

ncbi_organism_name: Anaerophaga thermohalophila DSM 12881

ncbi_submitter: University of Bergen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Marinilabiliales;f__Marinilabiliaceae;g__Anaerophaga;s__Anaerophaga thermohalophila;x__Anaerophaga thermohalophila DSM 12881


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Carleton Univeristy


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Deinococcota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Ottowia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_submitter: Universidad de Chile


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: University of California Berkeley


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp1 AA150

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp1 AA150

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Flavobacterium sp. MMS24-S5

ncbi_submitter: Chungnam National University


ncbi_organism_name: Alistipes shahii


ncbi_country: China: Yangling; Shaanxi Province

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: NWAFU


ncbi_isolation_source: bone sacral

ncbi_organism_name: Enterococcus sp. HMSC055G03

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Iran

ncbi_isolation_source: water of the hypersaline Aran-Bidgol lake in Iran

ncbi_organism_name: Alteribacillus bidgolensis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_isolation_source: feces

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_country: India: Assam

ncbi_isolation_source: vaginal discharge

ncbi_organism_name: Brucella abortus

ncbi_submitter: Madurai kamaraj university


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: MO

ncbi_isolation_source: liver

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Bacteroidales bacterium UBA4814

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4814


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: United Kingdom: West Midlands

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: uncultured Albidovulum sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_strain_identifiers: Sil NS 30

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_assembly_name: IMG-taxon 2599185209 annotated assembly

ncbi_organism_name: Salegentibacter flavus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: IN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: France

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: Thailand: Phatthalung

ncbi_submitter: Prince of Songkla University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_assembly_name: Mira de-novo assembly

ncbi_country: Italy: Parma

ncbi_isolation_source: human milk

ncbi_organism_name: Bifidobacterium breve 2L

ncbi_submitter: University of Parma


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Mexico

ncbi_isolation_source: Eggs

ncbi_organism_name: Pseudomonas sp. S44

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_country: Egypt

ncbi_isolation_source: Mesentery LN

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Tift Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: Thailand

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Stenotrophomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus sp. FSL M7-0110

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL M7-0110


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Thiocyanate bioreactor

ncbi_organism_name: Leifsonia sp. SCN 70-46

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolate: Nitrospira sp. RBC085

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Nitrospira sp.

ncbi_strain_identifiers: Nitrospira sp. RBC085

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA167

ncbi_submitter: Broad Institute


ncbi_organism_name: bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Teesside University


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Haifa


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Balneola sp.


ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal

ncbi_isolation_source: bovine udder

ncbi_organism_name: Streptococcus dysgalactiae


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: gutteral pouch

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Candidatus Kurthia intestinigallinarum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_organism_name: Ligilactobacillus ruminis


ncbi_country: Germany

ncbi_isolation_source: Tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Regensburg


ncbi_country: Poland

ncbi_isolation_source: broccoli frozen

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Warsaw


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of Galway


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Alphaproteobacteria bacterium UBA2723

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella sp. SAL04281

ncbi_submitter: Zhejiang university


ncbi_organism_name: Phycisphaeraceae bacterium D3-23

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Agathobacter rectalis


ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from dieased colony 1

ncbi_organism_name: Pelagimonas sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Ramon y Cajal


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_submitter: University of Bologna


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Japan

ncbi_isolation_source: bile

ncbi_submitter: Toho university


ncbi_isolation_source: Faeces


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Duodenibacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: This work was funded by the University Paris-Sud, France. R.A.B., L.D., and T.N. are members of the Laboratory of Excellence in Research on Medication and Innovative Therapeutics (LERMIT), supported by a grant from the French National Research Agency (ANR-10-LABX-33). This work was also supported by the “PHC Utique” program of the French Ministry of Foreign Affairs, the French Ministry of Higher Education, Research and Innovation and the Tunisian Ministry of Higher Education and Scientific Research under the CMCU project number 21G0807.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium GW2011_GWE2_42_7


ncbi_organism_name: Blautia producta


ncbi_organism_name: Chryseobacterium joostei

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis Mtb984

ncbi_submitter: Institute of Microbiology Chinese Academy of Sciences


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: AAFC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Helicobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Nocardia sp. NPDC059240

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Citrobacter meridianamericanus

ncbi_strain_identifiers: CAIM 1950

ncbi_submitter: CIAD, A.C.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_organism_name: uncultured Sulfurovum sp.


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Candidatus Nanoarchaeia archaeon

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Archaea;x__Nanobdellati;p__Nanobdellota;c__Candidatus Nanoarchaeia;x__unclassified Candidatus Nanoarchaeia;s__Candidatus Nanoarchaeia archaeon


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Endomicrobiia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_submitter: EPFL


ncbi_country: USA: Ithaca; New York

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Rakuno Gakuen University; Mansoura University; Zewail City of Science and Technology


ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Alcaligenes sp. CHO6

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Candidatus Pantoea borealis

ncbi_submitter: University of Queensland


ncbi_assembly_name: BfR 242

ncbi_isolate: BfR 242

ncbi_organism_name: Burkholderia mallei

ncbi_strain_identifiers: BfR 242

ncbi_submitter: FRIEDRICH-LOEFFLER-INSTITUT (FLI) Institute for Bacterial Infections and Zoonoses (IBIZ)


ncbi_country: USA

ncbi_isolation_source: discolored tissue in living oak tree

ncbi_organism_name: Dendrosporobacter quercicolus DSM 1736

ncbi_submitter: University of Melbourne


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: China: Tengchong; Baoshan; Yunnan

ncbi_isolation_source: soil

ncbi_organism_name: Ralstonia mojiangensis

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ellagibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0112R

ncbi_submitter: Broad Institute


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Mitsuokella multacida

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: In-house environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Slovenia: Domzale

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Biotechnical faculty, University of Ljubljana


ncbi_organism_name: Streptomyces acidiscabies

ncbi_submitter: Oregon State University


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Streptomyces peucetius

ncbi_strain_identifiers: NRRL WC-3868

ncbi_submitter: University of Illinois


ncbi_country: China: Quzhou

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: CAU


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD1_bin-0189

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Throat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: Portland State University


ncbi_country: USA: Thompson; ND

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_isolation_source: wound sinus

ncbi_organism_name: Streptococcus sp. HMSC062D07

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Clostridium sulfidigenes


ncbi_strain_identifiers: tamang

ncbi_submitter: Sikkim University


ncbi_organism_name: Bacillus sp. FSL K6-2869

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-2869


ncbi_submitter: Nestle Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Atopobium minutum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: EMG


ncbi_organism_name: Murimonas intestini

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University College Cork


ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: Australia: Brisbane

ncbi_isolation_source: rumen

ncbi_organism_name: Oribacterium sp. C9

ncbi_submitter: CSIRO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Little Rock; AR

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: Rectal Swab

ncbi_submitter: University of Michigan


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: ascites

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Heilongjiang province

ncbi_submitter: Academy of Military Medical Sciences, The Institute of Microbiology and Epidemiology, China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. heilongjiangensis;x__Rickettsia conorii subsp. heilongjiangensis 054


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Thomasclavelia sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Xylanibacter rarus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: EMG


ncbi_country: Spain: Reus; Catalonia

ncbi_isolation_source: Sewage

ncbi_organism_name: Arcobacter cloacae

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Yakult Central Institute


ncbi_organism_name: Serratia fonticola

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: China: Shaanxi

ncbi_isolation_source: Chinese pickles (in soy sauce)

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: China:Sanya Bay

ncbi_isolation_source: Sea water [ENVO:00002149]

ncbi_organism_name: Metabacillus sp. cB07

ncbi_submitter: South China Sea Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Michigan State University


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: not known

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: SC


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Mitsuokella multacida

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Gemmatimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Zurich


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Dokdonella ginsengisoli

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Methylophaga thiooxydans DMS010

ncbi_submitter: Moore Foundation


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Broad Institute


ncbi_isolate: S1 bin 7

ncbi_organism_name: Nostoc sp.

ncbi_strain_identifiers: S1 bin 7

ncbi_submitter: Duke University


ncbi_organism_name: Celeribacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: placenta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Slackia exigua


ncbi_country: China: Beijing city

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tianjin Genskey Medical Technology Co., Ltd


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Flavonifractor sp.


ncbi_isolation_source: soil

ncbi_organism_name: Nocardiopsis sp. TSRI0078

ncbi_submitter: The Scripps Research Institute


ncbi_country: Austria

ncbi_isolation_source: wound

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: AGES


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Portland State University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_submitter: NORHED grant


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Biosciences


ncbi_country: Denmark

ncbi_isolation_source: Swab from the tendon sheath of the right index finger affected by a panaritium

ncbi_organism_name: Mycoplasma phocimorsus

ncbi_submitter: Statens Serum Institute


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0301867.11

ncbi_submitter: IGS


ncbi_organism_name: Erwinia tasmaniensis Et1/99

ncbi_submitter: Max Planck Institute for Molecular Genetics (MPIMG)


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA

ncbi_isolation_source: Bronchial Wash

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Case Western Reserve University


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 14d patty soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Peking university


ncbi_country: USA: Boston

ncbi_isolation_source: eye

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Xiamen

ncbi_isolate: MAG Bin87

ncbi_isolation_source: activated sludge from lab-scale EBPR bioreactor; wastewater treatment plant

ncbi_organism_name: Accumulibacter sp.

ncbi_strain_identifiers: MAG Bin87

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_country: Malaysia

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya - University of Western Australia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Romboutsia timonensis


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: swine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Candidatus Methylomirabilis sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;x__unclassified Candidatus Methylomirabilis;s__Candidatus Methylomirabilis sp.


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Chile: Salar of Llamara

ncbi_isolation_source: Salted water

ncbi_organism_name: Idiomarina aminovorans

ncbi_submitter: Helmholtz Zentrum Dresden-Rossendorf


ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella oxytoca MGH 42

ncbi_strain_identifiers: MGH 42

ncbi_submitter: Broad Institute


ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Freshwater sediment

ncbi_organism_name: bacterium

ncbi_submitter: Aarhus University


ncbi_organism_name: Arachnia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Chile

ncbi_isolation_source: solar saltern

ncbi_organism_name: Halomonas nitroreducens

ncbi_submitter: Third Institute of Oceanography, State of Oceanic Administration


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,5,12:i:-


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: South Carolina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South American MRSA Consortium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Hubei

ncbi_isolation_source: Rice wine Koji

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University Microbial Pathogenomics Lab


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_country: Portugal: Porto

ncbi_isolation_source: blood culture

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: USA: Woods Hole; MA

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas sp. 1_2015MBL_MicDiv

ncbi_submitter: UC Davis


ncbi_organism_name: Hydrogenophilales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Blautia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_country: United Kingdom:Irish Republic; Dublin

ncbi_isolation_source: drinking water

ncbi_organism_name: Chryseobacterium sp. G0201

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: PatientN

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: BGI


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: fecal sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: chicken whole broiler carcass

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: USFDA


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: INTA


ncbi_country: China: Jinhua

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter sp. JH582

ncbi_submitter: Jinhua Central Hospital


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Microvirga lotononidis

ncbi_submitter: JGI


ncbi_country: France

ncbi_isolation_source: patient

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Paris Sud


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: Von Damm hydrothermal vent plume at depth 2041m

ncbi_organism_name: Erythrobacteraceae bacterium UBA2014

ncbi_submitter: University of Queensland


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: USA: Dallas; Texas

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- YR_bin-4172

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Methylobacterium sp. NPDC097929


ncbi_organism_name: Flavobacterium sinopsychrotolerans

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Methylocella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Thermodesulfobacteriota bacterium


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: uncultured Lawsonia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus paramycoides

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 monocultured in 1 g/ml imipenem treated Synthetic Cystic Fibrosis Media for 24 days

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Hyphomonas sp. UBA1472

ncbi_submitter: University of Queensland


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Alteromonas mediterranea

ncbi_submitter: University Miguel Hernandez


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dysgonomonas sp.


ncbi_organism_name: Faecalibacterium sp. CAG:74

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Weissella cibaria strain Xhu414

ncbi_organism_name: Weissella cibaria

ncbi_submitter: xihua university


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Thailand

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Phocaeicola dorei


ncbi_country: Poland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_submitter: Zhejiang university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Xuzhou

ncbi_isolation_source: milking environment

ncbi_organism_name: Shewanella sp. JNE4-1

ncbi_submitter: Yangzhou University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter sp. MGH 15

ncbi_strain_identifiers: MGH 15

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH 15


ncbi_country: Saudi Arabia: Jizan

ncbi_isolation_source: roots of desert plants

ncbi_organism_name: Enterobacter sp. SA187

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Ocean University of China


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Viet Nam

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 81858

ncbi_submitter: IGS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Paraguay

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: Trichococcus flocculiformis

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Austria

ncbi_isolation_source: Human

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 63.H.87


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Vulcanimicrobiaceae bacterium


ncbi_country: Qatar

ncbi_isolation_source: Respiratory secretions

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Queensland


ncbi_organism_name: Aliarcobacter lanthieri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Xiamen University


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Rumen uncultured genome RUG12963

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Radboud University


ncbi_country: China: Qinghai

ncbi_isolation_source: leaves

ncbi_organism_name: Nocardioides sp. S-1144

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Pakistan: Burewala; Punjab

ncbi_organism_name: Pantoea sp. Bo_2

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Japan

ncbi_isolation_source: skin of face; 6 single-cells amplified by MDA combined with human skin metagenome reads

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: bioBiome, Inc.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Muribaculaceae bacterium Isolate-084 (Janvier)

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica: King George Island; Admiralty Bay

ncbi_isolation_source: petroleum-contaminated soil collected near the petroleum pumping and storage warehouse at the Henryk Arctowski Polish Antarctic Station

ncbi_organism_name: Rhodococcus sp. ANT_H53B

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. ANT_H53B


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: University Hospital of Dusseldorf


ncbi_country: China: Zhejiang

ncbi_isolation_source: worker

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_assembly_name: BSN155 contigs

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: soil

ncbi_organism_name: Gordonia polyisoprenivorans

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus SAFR-032

ncbi_submitter: BGI


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Minnesota

ncbi_isolation_source: Sinus

ncbi_organism_name: Aggregatibacter aphrophilus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: ovine adult female liver

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Lacrimispora sp.


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Cultivarium


ncbi_country: Sweden

ncbi_isolation_source: UTI

ncbi_submitter: Uppsala University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Israel

ncbi_isolation_source: cowshed 7 multiparous

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heriot-Watt University


ncbi_country: USA: CA

ncbi_isolation_source: onion waste

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Yangzhou

ncbi_isolation_source: pig carcass

ncbi_submitter: Yangzhou University


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Eudoraea sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_submitter: University of Antwerp


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Hyphobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: SponGES


ncbi_organism_name: [Clostridium] clostridioforme 90A3

ncbi_submitter: Broad Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: fruit

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: Pst DC 92-1

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 78 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_isolation_source: cold seep

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: Washington

ncbi_isolation_source: stool

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Phyllobacterium sp.


ncbi_organism_name: Mixta calida

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: Taiwan: GenMont Biotech (Tainan)

ncbi_isolation_source: Oral

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Yuan Ze University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Centre de recherche CHU Sainte-Justine


ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: EMG


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Paenibacillus alvei

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Italy

ncbi_isolation_source: leaves

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_country: USA: Richmond; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Thermotogales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Poland

ncbi_organism_name: Citrobacter sp. TBCS-14

ncbi_submitter: NanKai universit


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_organism_name: Chthoniobacterales bacterium


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Legionella santicrucis

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridium phoceensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: CAU


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Moellerella wisconsensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Netherlands: Wolfheze forest

ncbi_isolation_source: wood decay material

ncbi_organism_name: Granulicella sp. WH15

ncbi_submitter: Netherlands Institute of Ecology (NIOO-KNAW)


ncbi_organism_name: Vibrio kanaloae

ncbi_submitter: Ocean University of China


ncbi_isolation_source: unknown

ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: UNIVERSITY OF JENA


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Minnesota

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus sp. UMNPBX2

ncbi_submitter: University of Minnesota


ncbi_submitter: Kyoto University


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA-ARS-USMARC


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: EMG


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_submitter: DOE JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: FIOCRUZ


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: CRC RESIST


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mediterranea sp.


ncbi_isolation_source: activated sludge

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China:Ningbo City

ncbi_isolation_source: marine sediment

ncbi_organism_name: Flavobacteriaceae bacterium NBU2973

ncbi_submitter: Ningbo University


ncbi_organism_name: Streptococcus salivarius


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Australia: Adelaide Hills; SA

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: mucosa of vagina [UBERON:0004983]

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: TNO


ncbi_organism_name: Staphylococcus aureus F92121

ncbi_submitter: Broad Institute


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Zhejiang University


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Listeria marthii

ncbi_submitter: Cornell University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Clostridium sp. CAG:568


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Marinobacter sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Brucella sp. BZ

ncbi_strain_identifiers: BZ

ncbi_submitter: Dalian University of Technology


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 247

ncbi_submitter: Ghent University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Municipal Center for Disease Control and Prevention


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Dactylosporangium sp. NPDC049742

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bordetella tumulicola

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Borreliella bavariensis

ncbi_submitter: LMU Munich


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Inserm


ncbi_country: Cambodia

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: South Korea: Namsan-myeon; Iksan-si; Jeollabuk-do

ncbi_isolation_source: orchard

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Netherlands

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL


ncbi_country: Australia: Brisbane

ncbi_organism_name: Blautia sp.

ncbi_submitter: The University of Queensland


ncbi_country: USA: White Oak River estuary; North Carolina; USA

ncbi_isolation_source: estuarine anaerobic sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Osaka Prefecture University


ncbi_country: New Zealand: Christchurch

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Canterbury


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EBI


ncbi_country: Germany

ncbi_strain_identifiers: PBaeI

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Jiangsu

ncbi_isolation_source: water

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_country: Greece: Milos

ncbi_isolation_source: acidic pond

ncbi_organism_name: Acidithiobacillus ferrianus

ncbi_strain_identifiers: MG

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Phaeobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: USA:Durham; North Carolina

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Duke University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: algae surface

ncbi_organism_name: Rhodopirellula baltica SWK14

ncbi_submitter: MIMAS


ncbi_country: Romania: Bucharest

ncbi_isolation_source: Enviromental

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Huazhong Agricultural University


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-676-P23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Chlamydia trachomatis A2497

ncbi_submitter: Rocky Mountain Laboratory


ncbi_organism_name: Staphylococcus succinus

ncbi_submitter: University of Minho


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: Rumen uncultured genome RUG14175

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Zipacnadia bacterium

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;c__Candidatus Zipacnadia;x__unclassified Candidatus Zipacnadia;s__Candidatus Zipacnadia bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gemmiger formicilis


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: Taiwan

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: National Chung Cheng University


ncbi_country: Brazil: Santos

ncbi_isolation_source: animal

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: USP


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella sp. SC4

ncbi_submitter: Sichuan University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: University of Chicago


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Zhejiang

ncbi_isolation_source: kidney preservation fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital,College of Medicine,Zhejiang University


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: freshwater anammox upflow column Reactor

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11478

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Reunion

ncbi_isolation_source: Citrus leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: cirad

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: France: Nice

ncbi_isolation_source: Abdominal abscess

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: CHU de Rennes


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Pacific Ocean: Hydrate Ridge South

ncbi_isolation_source: sample #3730; Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68; Alvin dive 4635 at Hydrate Ridge South from a site of active methane seepage; the upper 0-6 cm of sediment from the push core was used

ncbi_organism_name: Desulfobulbaceae bacterium S3730MH12

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Ruzzini Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE