ncbi_country: India

ncbi_isolation_source: Pomegranate plant

ncbi_organism_name: Xanthomonas citri pv. punicae

ncbi_submitter: Central University of Kerala

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. punicae


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_assembly_name: Rumen uncultured genome RUG12479

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_level: Contig

ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Loyola University Chicago


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Maryland

ncbi_isolation_source: Fish tissue

ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: University of Georgia


gtdb_representative: t

ncbi_organism_name: uncultured Methylomirabilota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__environmental samples;s__uncultured Methylomirabilota bacterium


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Greece

ncbi_isolation_source: aquaculture environment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: eye

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of New South Wales


ncbi_organism_name: Photorhabdus kayaii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Desulfocurvus sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Cecum

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


gtdb_type_species_of_genus: t

ncbi_isolation_source: marine fish skin

ncbi_organism_name: Photobacterium phosphoreum

ncbi_refseq_category: reference genome

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo

ncbi_type_material_designation: assembly from type material


ncbi_country: New Zealand

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. LR196d

ncbi_submitter: Massey University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: potato

ncbi_organism_name: Pectobacterium brasiliense ICMP 19477

ncbi_submitter: The New Zealand Institute for Plant & Food Research


ncbi_organism_name: uncultured Desulfatibacillum sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Brevibacillus parabrevis

ncbi_submitter: EMG


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 200

ncbi_submitter: Oregon State University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: US Food and Drug Administration


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter kobei


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Africa:Stellenbosch

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA7745

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H49831

ncbi_submitter: Broad Institute


ncbi_organism_name: Halomonas sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_country: USA: Saint Louis; MO

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Enterococcus sp. C2

ncbi_submitter: Northwest A & F University


ncbi_country: Japan

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: GUATP 97b

ncbi_submitter: Applied Biological Science, Gifu University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: UIUC


ncbi_organism_name: Marinobacter sp.


ncbi_country: Argentina

ncbi_organism_name: Staphylococcus aureus DAR5865


ncbi_country: USA

ncbi_isolation_source: colostrum

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Actinomyces radicidentis

ncbi_submitter: EMG


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Acidiphilium sp. 34-64-41


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3292

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3292


ncbi_country: China: Fujian

ncbi_isolation_source: culture medium

ncbi_organism_name: Proteus cibi

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: BGI


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_submitter: University College Dublin


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_country: United Kingdom: Aberdeen

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_country: USA: Washington

ncbi_isolation_source: stool

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: BGI-Shenzhen


ncbi_country: Taiwan

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Australia: Boho South; VIC

ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Streptomyces sp. NPDC099050

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Salmonella sp. SAL04276

ncbi_submitter: Zhejiang university


ncbi_organism_name: Pseudolactococcus piscium

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: The University of Sydney


ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- I3-5_bin-000

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Legionellales bacterium

ncbi_submitter: University of Galway


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. MPR-R2A6

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8752

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: EMG


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: host s whole body

ncbi_organism_name: Candidatus Erwinia haradaeae

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Klebsiella sp. 111863

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: South Korea: Yuseong-gu; Daejeon-si

ncbi_isolation_source: Cow fecal

ncbi_organism_name: Brevibacillus ruminantium

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_isolate: EEOBICKM

ncbi_organism_name: Candidatus Stammera capleta

ncbi_strain_identifiers: EEOBICKM

ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_assembly_name: freshwater MAG --- Erken-D5_bin-0703

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: USA: Louisiana

ncbi_isolation_source: Moore swab

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: hebei

ncbi_isolation_source: Soybean rhizosphere soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: China: Qinghai

ncbi_isolation_source: soil

ncbi_organism_name: Dyadobacter sp. CY261

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: sheep meat

ncbi_organism_name: Clostridium sp. CM027

ncbi_submitter: University of Zurich


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-1383

ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Cytophagia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;x__environmental samples;s__uncultured Cytophagia bacterium


ncbi_isolation_source: bull calf intestinal microflora

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Pretoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Microbiological Diagnostic Unit


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-28

ncbi_submitter: Arkin Lab


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Russia: Pushchino

ncbi_isolation_source: root nodules

ncbi_organism_name: Delftia sp. Lp-1

ncbi_submitter: SciBear OU


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Plantibacter sp. RU18

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos (INTA)


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Pseudomonas bubulae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Argentina

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_assembly_level: Chromosome

ncbi_country: Hong Kong

ncbi_isolation_source: seawater

ncbi_organism_name: Synechococcus sp. HK01-R

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Nankai University


ncbi_organism_name: Streptomyces sp. SID4946

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 2 / B; 5m depth; 0.1 filter

ncbi_organism_name: Bdellovibrionales bacterium GWB1_55_8

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: FS 86

ncbi_submitter: G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino Scientific Cente


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Tennessee

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_organism_name: Marivita sp. S2033

ncbi_submitter: Shandong University at Weihai


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Phycisphaerales bacterium


ncbi_organism_name: Pseudomonas aeruginosa BWH058

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: DC

ncbi_isolation_source: CSF

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Enterousia excrementavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;s__Candidatus Enterousia excrementavium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R856;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_strain_identifiers: MAVP-P

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus SMMC6108


ncbi_country: China: Hangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: Lithuania

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Caenibius sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Canada: Val-d Or

ncbi_isolation_source: surface-sterilized gnotobiotic actinorhizal nodule; gnotobiotic speckled alder with Frankia sp. AvcI1

ncbi_organism_name: Micromonospora sp. Mcm103

ncbi_submitter: Universite de Sherbrooke


ncbi_country: Poland

ncbi_isolation_source: tuber

ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: University of Gdansk, Intercollegiate Faculty of Biotechnology UG&MUG


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: IZSLER


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_assembly_name: Unicycler

ncbi_country: Iran

ncbi_isolation_source: food

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Padova university


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef sponge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: James Cook University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Escherichia coli

ncbi_submitter: Memorial Sloan Kettering Cancer Center


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou University


ncbi_organism_name: Megasphaera micronuciformis


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Boston College


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Park City; UT

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Norway

ncbi_isolation_source: fish gut

ncbi_organism_name: Shewanella baltica

ncbi_submitter: Institute of Marine Research


ncbi_country: USA: Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: CDC


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_submitter: Federal University of Minas Gerais

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: chicken

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Paenibacillus lautus

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Sphingomonas bacterium

ncbi_submitter: Colorado State University


ncbi_country: Chile: Magallanes

ncbi_organism_name: Tenacibaculum piscium

ncbi_submitter: Universidad Bernardo O`Higgigins


ncbi_country: Ireland

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy: d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter polyketidifaciens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;s__Candidatus Palauibacter polyketidifaciens


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_organism_name: Neisseria meningitidis OX99.30304

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA: Texas

ncbi_organism_name: Microbacterium sp. SORGH_AS_1204

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Syntrophorhabdus sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Pedobacter sp. JCM 36344

ncbi_submitter: National Institute of Polar Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter;x__unclassified Pedobacter;s__Pedobacter sp. JCM 36344


ncbi_country: USA

ncbi_isolation_source: hide

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: soil

ncbi_organism_name: Ramlibacter pallidus

ncbi_submitter: Dongguk University


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Methylophilales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Kato

ncbi_isolate: Kato

ncbi_organism_name: Orientia tsutsugamushi

ncbi_strain_identifiers: Kato

ncbi_submitter: OXFORD UNIVERSITY


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Weeksellaceae bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus agalactiae serogroup III

ncbi_submitter: GSK Vaccines


ncbi_organism_name: Radiobacillus sp. PE A8.2

ncbi_strain_identifiers: PE A8.2

ncbi_submitter: Universidad Austral de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Radiobacillus;x__unclassified Radiobacillus;s__Radiobacillus sp. PE A8.2


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: University of Colorado at Boulder


ncbi_assembly_name: M. mor_41

ncbi_organism_name: Morganella morganii

ncbi_submitter: Xiamen university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_isolation_source: potato salad

ncbi_organism_name: Staphylococcus aureus KLT6

ncbi_submitter: ohnosequences! research group, Era7 Bioinformatics


ncbi_organism_name: Bifidobacterium breve HPH0326

ncbi_submitter: Broad Institute


ncbi_organism_name: Burkholderia multivorans

ncbi_strain_identifiers: DWS 42B-1

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: feces

ncbi_submitter: Sichuan University


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: ESALQ/USP


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Oceanobacillus sp. FSL K6-3682

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Oceanobacillus;x__unclassified Oceanobacillus;s__Oceanobacillus sp. FSL K6-3682


ncbi_country: India: Mysore

ncbi_isolation_source: Chicken ceca

ncbi_submitter: University of Hyderabad


ncbi_country: France

ncbi_isolation_source: Colibacillosis clinical case isolated from a dead animal

ncbi_submitter: IAF-INRS


ncbi_country: Germany

ncbi_isolation_source: central venous catheter

ncbi_submitter: SurvCARE


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Penn State University, Department of Food Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis;sb__Bifidobacterium animalis subsp. animalis;x__Bifidobacterium animalis subsp. animalis ATCC 25527


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Intestinibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada: Alberta

ncbi_isolation_source: Culture Media

ncbi_submitter: University of Alberta


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: China: Beijing

ncbi_isolation_source: activated sludge biological foaming

ncbi_organism_name: Candidatus Kaistella beijingensis

ncbi_submitter: Institute of Microbiology, CAS


ncbi_organism_name: Helicobacter ganmani


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Serratia nevei

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Rhodosalinus sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Bifidobacterium pullorum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NBC_00932

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: College of Fisheries, Lembucherra

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: CELL

ncbi_isolate: Cellulomonas sp. T2.31MG-18

ncbi_organism_name: Cellulomonas sp. T2.31MG-18

ncbi_strain_identifiers: Cellulomonas sp. T2.31MG-18

ncbi_submitter: Centro Biologia Molecular Severo Ochoa (CBMSO)


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Pseudomonas sp. LW8

ncbi_submitter: Athabasca University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Ramon y Cajal


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus haemolyticus


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: Colon

ncbi_organism_name: Ileibacterium valens


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: anaerobic digester filtrate obtained from the belt filter press of the CVWRF wastewater treatment plant

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;o__Candidatus Tepidiaquacellales;x__unclassified Candidatus Tepidiaquacellales;s__Candidatus Tepidiaquacellales bacterium OLB4/UTCHB1


ncbi_isolation_source: meat

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: ETH Zurich


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Moldova

ncbi_isolation_source: lung

ncbi_submitter: San Diego State University


ncbi_country: Spain: Asturias

ncbi_organism_name: Comamonas sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: NC

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Japan

ncbi_isolation_source: closed abscess

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho university


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Korean traditional kimchi

ncbi_strain_identifiers: KCTC 3535

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Loigolactobacillus;s__Loigolactobacillus coryniformis;sb__Loigolactobacillus coryniformis subsp. torquens;x__Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: screen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Koessen;x__Salmonella enterica subsp. enterica serovar Koessen str. S-1501


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Georgia: Ninotsminda

ncbi_organism_name: Yersinia pestis 3770

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis 3770


ncbi_country: USA: CO

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Acidithiobacillus ferrooxidans


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Shewanella chilikensis

ncbi_submitter: South China Agriculture University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Anaerocolumna sp.


ncbi_assembly_name: Rumen uncultured genome RUG11770

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: New Zealand: Earnscleugh

ncbi_organism_name: Pseudomonas syringae pv. persicae

ncbi_strain_identifiers: ICMP 5786

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. persicae


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Rectal swab 1

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Central del Ecuador


ncbi_isolation_source: bone

ncbi_organism_name: Staphylococcus sp. HMSC074F11

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Gansu

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Methylobacterium carpenticola

ncbi_submitter: EMBIOME Co., Ltd.


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Roseburia sp. AF12-17LB

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Switzerland: Basel

ncbi_isolation_source: activated sludge from waste water treatment plant

ncbi_organism_name: Mycobacterium paragordonae

ncbi_submitter: University of Stuttgart


ncbi_organism_name: Serratia sp. SM59

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. SM59


ncbi_organism_name: Acidovorax temperans


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: lung

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ares Genetics


ncbi_country: Germany

ncbi_isolation_source: potato

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Australia: Western Australia

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_country: Russia: Vologda

ncbi_isolation_source: raw milk

ncbi_organism_name: Yersinia massiliensis

ncbi_strain_identifiers: 976 StPb PI

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thermomicrobiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Spain: Santander

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: ITACYL


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1215

ncbi_submitter: Broad Institute


ncbi_country: USA: Seattle

ncbi_isolation_source: Cystic fibrosis paediatric patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: East China University of Science and Technology


ncbi_organism_name: Rhodococcus sp. IEGM 69

ncbi_strain_identifiers: IEGM 69

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. IEGM 69


ncbi_organism_name: Calothrix brevissima NIES-22

ncbi_submitter: Toyohashi University of Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Sulfuricurvum sp. UBA2173

ncbi_submitter: University of Queensland


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_assembly_name: FutureBRF Halomonas Bluephagenesis TD01 Genome v1

ncbi_organism_name: Halomonas sp. TD01

ncbi_strain_identifiers: Halomonas Bluephagenesis

ncbi_submitter: University of Manchester


ncbi_organism_name: Brucella abortus RB51-AHVLA


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: Shrimp farm water

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Fisheries College and Research Institute


ncbi_country: China: Ningbo

ncbi_submitter: Ningbo First Hospital


ncbi_country: Canada: Toronto

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: Stellaceae bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Lysinibacillus xylanilyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Enterococcus sp. DIV2447a

ncbi_submitter: Broad Institute


ncbi_isolate: AOP34_CS2_surf _bin _1

ncbi_organism_name: Candidatus Microbacterium stercoravium

ncbi_strain_identifiers: AOP34_CS2_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_submitter: Industrial Technology Development Institute


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Cleveland Clinic


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- Umea1p1_bin-624

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_assembly_name: Rumen uncultured genome RUG797

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Clostridium sp.


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Barnesiella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Tigheibacillus halophilus

ncbi_submitter: University of Galway


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-0807


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: marine ANAMMOX bioreactor

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: KAUST


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ureaplasma sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada

ncbi_isolation_source: Cecal

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coprococcus sp. AM11-30B

ncbi_submitter: BGI-Shenzhen


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_organism_name: Oenococcus oeni IOEB_CiNe

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 210

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 1341

ncbi_submitter: University of Calgary


ncbi_country: USA:New York City

ncbi_isolation_source: New York City MTA subway

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium A4

ncbi_submitter: Broad Institute


ncbi_country: Chile: Santiago

ncbi_isolation_source: blood

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: France

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_country: USA: Ellis Island; Alton; MO

ncbi_isolation_source: wetland soil

ncbi_organism_name: Cereibacter sphaeroides

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_country: Sri Lanka: Colombo

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Chester


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Escherichia coli 8.0586

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China

ncbi_isolation_source: library

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Shenzhen University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Malaysia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola Univeristy Chicago


ncbi_organism_name: Pseudarthrobacter oxydans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudescherichia sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Malaya


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: USP


ncbi_country: Taiwan

ncbi_organism_name: Aliagarivorans taiwanensis DSM 22990

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingobacterium spiritivorum

ncbi_submitter: Universite Paris Saclay


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Clostridium tetani

ncbi_submitter: Aarhus University


ncbi_country: Kenya: Ngaremara-Isiolo

ncbi_isolation_source: milk

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Kenya Agriculture and Livestock Research Organization


ncbi_country: Portugal

ncbi_isolation_source: endophytic infection of leaf

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Instituto Pedro Nunes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Stutzerimonas kunmingensis


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: NSW Department of Primary Industries


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Australia: Newcastle

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: University of Queensland


ncbi_country: Indonesia: Pariaman region in Sumatra

ncbi_isolation_source: skin lesion

ncbi_organism_name: Treponema pallidum subsp. pertenue

ncbi_strain_identifiers: Sei Geringging K403

ncbi_submitter: Masaryk University, Faculty of Medicine


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-5-11

ncbi_submitter: Curtin University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Guangxi University


ncbi_isolation_source: pleural fluid in respiratory ICU

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Leptospira sp.

ncbi_submitter: University of Michigan


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: Brazil

ncbi_isolation_source: ready to eat dish

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Longilinea sp.

ncbi_submitter: Nanyang Technological University


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: New Zealand: Christchurch

ncbi_isolation_source: returned activated sewage sludge

ncbi_organism_name: Achromobacter anxifer

ncbi_submitter: Institute of Environmental Science Ltd


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of Bristol


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Fibrobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Alistipes sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Australia: Brisbane

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptosporangiaceae bacterium


ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: National Taiwan University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_country: Italy

ncbi_isolation_source: ready to eat food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_AD_5

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Actinomycetota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: University of Alberta


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp1 AA123

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp1 AA123

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Dehalococcoidia bacterium UBA1122


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Southern Ocean

ncbi_isolation_source: (MES) mesopelagic zone

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: China Agricultural University


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Pacific Ocean: Northwestern Pacific Ocean station ON8

ncbi_isolation_source: deep sea water

ncbi_organism_name: Limnobacter sp. SAORIC-690

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Afghanistan

ncbi_isolation_source: Tissue

ncbi_submitter: The University of Sydney


ncbi_country: China: Tibet

ncbi_isolation_source: Tibet kefir

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Beijing Technology and Business University


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chulalongkorn University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: freshwater MAG --- Umea3_bin-2810

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Buttiauxella agrestis

ncbi_submitter: University of manitoba


ncbi_isolation_source: sourdough

ncbi_submitter: ETH Zurich


ncbi_country: China:Yunnan province

ncbi_isolation_source: native outdoor hot spring sediment

ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Fudan University


ncbi_strain_identifiers: USDA_100;USDA 100

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum;x__Salmonella enterica subsp. enterica serovar Anatum str. USDA 100


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_assembly_name: IMG-taxon 2606217201 annotated assembly

ncbi_organism_name: Saccharomonospora viridis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: NanJing University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_submitter: University of Rhode Island

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thiodubiliella;s__Candidatus Thiodubiliella endoseptemdiera


ncbi_country: Argentina: San Carlos Sur

ncbi_isolation_source: first pond of the CYC serial dairy industry stabilization pond system

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: INTA


ncbi_organism_name: Streptococcus hyointestinalis

ncbi_submitter: University of Manitoba


ncbi_country: China: Jilin

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Pseudomonas inefficax

ncbi_submitter: Embrapa Environment


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_strain_identifiers: affine MC_81

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: China: Tengchong; Baoshan; Yunnan

ncbi_organism_name: Ralstonia wenshanensis

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Japan

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Nankai University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: France

ncbi_isolation_source: Nasal cavity of a healthy goat

ncbi_organism_name: Moraxella boevrei DSM 14165

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_assembly_name: Rumen uncultured genome RUG14163

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: California; San Luis Obispo County; Cayucos; Morro Strand State Beach North

ncbi_isolation_source: genital swab

ncbi_organism_name: Ureaplasma miroungigenitalium

ncbi_submitter: US FDA


ncbi_country: Poland: Kutno

ncbi_submitter: National Medicines Institiute


ncbi_organism_name: Bacteroides heparinolyticus


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: South Korea: coastal area of the Sokcho

ncbi_isolation_source: seawater

ncbi_organism_name: Amylibacter sp. IMCC11727

ncbi_submitter: Inha University


ncbi_country: USA: Chicago

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_assembly_name: IMG-taxon 2695420920 annotated assembly

ncbi_organism_name: Chryseobacterium carnipullorum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Enterobacter sp. 148H3

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_isolation_source: anal swab

ncbi_organism_name: Aeromonas simiae

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Simplicispira sp.


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Jammu

ncbi_strain_identifiers: JMM

ncbi_submitter: University of Delhi


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centre pasteur du Cameroun


ncbi_country: South Korea

ncbi_isolation_source: air

ncbi_organism_name: Skermanella aerolata KACC 11604

ncbi_submitter: State Key Laboratory of Agricultural Microbiology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Maqiao Town; Yongchen City; Henan Province

ncbi_isolation_source: Rhizosphere soil[002]

ncbi_organism_name: Bacillus siamensis

ncbi_submitter: Henan Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus siamensis


ncbi_organism_name: Fusobacterium varium

ncbi_submitter: National Center for Biotechnology


ncbi_country: Russia

ncbi_organism_name: Halomonas halocynthiae DSM 14573

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_country: Israel: Palestine; Gaza

ncbi_isolation_source: wound

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Uppsala University


ncbi_organism_name: Pseudomonas putida

ncbi_strain_identifiers: ATCC 12633 adapted DEF1 recombinant strain

ncbi_submitter: University of Minnesota


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: KAUST


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_organism_name: Pseudomonas sp. PLb11B

ncbi_submitter: LMU Munich


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 0809

ncbi_submitter: The University of Queensland


ncbi_organism_name: Acinetobacter celticus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: USA: Arizona; Sonoran Desert

ncbi_isolate: SON bin7

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: SON bin7

ncbi_submitter: Monash University


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: bacterium

ncbi_submitter: University of Iowa


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: cold seep

ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_organism_name: Mucilaginibacter antarcticus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterobacter cloacae complex sp. IR5382

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5382


ncbi_organism_name: Bacillus sp. DWP3-1

ncbi_submitter: Institute of Tibetan Plateau Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. DWP3-1


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Japan: Aburatsubo Inlet; Kanagawa Prefecture

ncbi_isolation_source: Sea surface microlayer

ncbi_organism_name: Reichenbachiella sp. 5M10

ncbi_submitter: The University of Tokyo


ncbi_country: China: HeBei

ncbi_isolation_source: Suppuration

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: human fecal sample

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: University of Chicago


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea longicatena


ncbi_country: USA: State College; PA

ncbi_isolation_source: lab-scale wastewater treatment reactor

ncbi_organism_name: Billgrantia desiderata SP1

ncbi_submitter: Penn State University


ncbi_organism_name: Sorangium sp. So ce302

ncbi_strain_identifiers: So ce302

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce302


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Yersinia pestis CMCC95001

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: California coast

ncbi_isolation_source: marine sediment

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: McGill University


ncbi_country: Brazil: Canaa dos Carajas

ncbi_isolation_source: water

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: National Medicines Institute


ncbi_country: Mexico: Yucatan

ncbi_organism_name: Escherichia coli

ncbi_submitter: CINVESTAV-IPN


ncbi_country: Austria

ncbi_isolation_source: joint

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Burkholderia oklahomensis EO147

ncbi_submitter: NMRC


ncbi_organism_name: Campylobacter coli 2692

ncbi_submitter: Cornell University


ncbi_assembly_name: Willow Endophyte RIT304

ncbi_country: USA: New York; Geneva

ncbi_isolation_source: Willow (Salix sp.)

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: USA: Philadelphia

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Pennsylvania


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen; Guangdong

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium elkanii

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: London

ncbi_isolation_source: Plaque (caries -)

ncbi_organism_name: Actinomyces oris

ncbi_submitter: King's College London


ncbi_country: USA: CO

ncbi_isolation_source: feces goose branta

ncbi_organism_name: Escherichia sp. MOD1-EC5350

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Chryseobacterium sp. JV558

ncbi_submitter: UMR5557 Laboratoire d'Ecologie Microbienne


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia: Clermont; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA:Minnesota; Rochester

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Mayo Clinic


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_submitter: China Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Entomomonas sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China

ncbi_organism_name: Sinorhizobium sp. CCBAU 05631

ncbi_strain_identifiers: CCBAU 05631


ncbi_submitter: Quadram Institutte


ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival plaque

ncbi_organism_name: Prevotella intermedia

ncbi_strain_identifiers: KCOM 1741

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_country: South Korea

ncbi_isolation_source: river water

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Gwangju Institute of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Fujian

ncbi_isolation_source: poultry

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Tepidibacillus decaturensis

ncbi_submitter: University of Bremen


ncbi_country: Netherlands

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Groningen


ncbi_country: China: Futian

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: blood and spinal fluid

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Chiba University


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Shanghai

ncbi_isolation_source: fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ruijin Hospital


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Florida

ncbi_organism_name: Prescottella equi

ncbi_submitter: The University of Edinburgh


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter sp.

ncbi_submitter: AAFC


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: INRA


ncbi_assembly_name: freshwater MAG --- MJ-2014-D6_bin-075

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: cervical

ncbi_organism_name: Staphylococcus sp. HMSC065C10

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Yunfu; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Thermaerobacter sp.

ncbi_submitter: South china normal university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Thermaerobacter;x__unclassified Thermaerobacter;s__Thermaerobacter sp.


ncbi_organism_name: Tsuneonella sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Chile

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Olsenella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: MN

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: Acacia

ncbi_organism_name: Caldibacillus thermoamylovorans

ncbi_submitter: University of Groningen


ncbi_organism_name: Leptolyngbyaceae cyanobacterium

ncbi_submitter: Zhejiang University