ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Pennsylvania

ncbi_genome_representation: full

ncbi_isolation_source: milk carafe

ncbi_organism_name: Chryseobacterium sp. JM1

ncbi_submitter: GCAT-SEEK


gtdb_representative: f

ncbi_country: USA: Lexington; Kentucky

ncbi_isolation_source: placenta

ncbi_submitter: Copenhagen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus;x__Streptococcus equi subsp. zooepidemicus SzAM35


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: USA

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas salmonicida subsp. salmonicida

ncbi_submitter: Universidad Mayor


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: American University of Beirut


ncbi_country: Spain: Asturias

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: China: Chongqing

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Newman NM-CQ

ncbi_submitter: Third Military Medical University


ncbi_country: USA: Idaho; Boise

ncbi_isolation_source: abdominal wound

ncbi_submitter: National Center for Genome Resources (NCGR)


ncbi_assembly_level: Scaffold

ncbi_country: South Korea

ncbi_isolation_source: tidal flat

ncbi_organism_name: Halobacillus sp. Nhm2S1

ncbi_submitter: Chungbuk national university


ncbi_country: USA: Texas

ncbi_isolation_source: transedoscopic tracheal wash

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Gawalong Glacier in Tibet

ncbi_isolation_source: plant

ncbi_organism_name: Sphingobacterium athyrii

ncbi_refseq_category: reference genome

ncbi_submitter: Capital Normal University

ncbi_type_material_designation: assembly from type material


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum of adult cystic fibrosis patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA60190

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NIZO food research


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Planktomarina sp.

ncbi_submitter: Clemson University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Gallibacterium anatis

ncbi_strain_identifiers: SCPM-O-B-13149 (Simon)

ncbi_submitter: SRCAMB


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Chittagong


ncbi_organism_name: Ottowia flava

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_organism_name: Actinomycetes bacterium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Hangzhou

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: fresh water stream

ncbi_organism_name: Undibacterium amnicola

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Turkey

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: USAMRIID


ncbi_assembly_name: IMG-taxon 2593339267 annotated assembly

ncbi_organism_name: Streptococcus equinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium breve


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Galway


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Putra Malaysia


ncbi_submitter: Peking University


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: South Korea: Seoun-myeon; Anseong-si; Gyeonggi-do

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: National Institute of Crop Science, RDA


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: lake water

ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: St. Joseph; Minnesota

ncbi_isolation_source: running water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Kenya

ncbi_organism_name: Spirochaetales bacterium UBA6840

ncbi_submitter: University of Queensland


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_organism_name: Clostridium phoceensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: American Type Culture Collection (ATCC)


ncbi_isolation_source: nasopharynx

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Chile

ncbi_isolation_source: Salar de Atacama; Atacama Desert

ncbi_organism_name: Streptomyces leeuwenhoekii

ncbi_strain_identifiers: type strain (C34;NRRL B-24963);DSM 42122

ncbi_submitter: JIC


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Klebsiella sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG10794

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Aeromonadales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: freshwater

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Reyranella sp.

ncbi_submitter: University of Oklahoma


ncbi_organism_name: uncultured Muribaculum sp.


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2599185265 annotated assembly

ncbi_organism_name: Enterovibrio norvegicus DSM 15893

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Muribaculum intestinale


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Lettuce

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_country: China: Huainan

ncbi_isolation_source: coal samples cultured in anaerobic conditions in minimal salts plus yeast media

ncbi_organism_name: Bacillaceae bacterium

ncbi_submitter: Anhui University of Science & Technology


ncbi_isolation_source: burned soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: Campylobacter coli CVM 41958 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli CVM 41958

ncbi_submitter: FDA/CVM


ncbi_assembly_name: freshwater MAG --- MJ120924A_bin-740

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Final Effluent)

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shandong

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Vibrio tasmaniensis

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas vesicatoria

ncbi_strain_identifiers: Xcv DC 93-5

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: USA: NY

ncbi_isolation_source: feces

ncbi_strain_identifiers: NY_FSL C7-142

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hartford


ncbi_country: USA: California; Modesto

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: Fusobacterium necrophorum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: Seawater

ncbi_organism_name: Psychrobacter namhaensis

ncbi_submitter: INRAE


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Iowa State University


ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Eggerthella lenta


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Candidatus Yanofskybacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;x__unclassified Candidatus Yanofskybacteria;s__Candidatus Yanofskybacteria bacterium


ncbi_submitter: Makerere University


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: Australia: Tasmania

ncbi_submitter: Tasmanian Health Service


ncbi_country: Canada: Alberta

ncbi_isolation_source: Vacuum-packaged pork

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Denitrobacterium sp.

ncbi_submitter: EMG


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Methylopila sp. 73B

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Salmonella sp. NW709

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Rhodococcus qingshengii


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fidelibacterota bacterium UBA6528

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA6528


ncbi_organism_name: uncultured Paludibacter sp.


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: Zhejiang university


ncbi_organism_name: Pseudomonas xanthosomatis

ncbi_submitter: Yangzhou university college of plant protection


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes N53-1

ncbi_submitter: DTU Food


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 99670;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Paenibacillus sp. FSL P4-0338

ncbi_submitter: Penn State


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: Michigan; Powell Township; Upper Pine Lake

ncbi_isolation_source: water

ncbi_organism_name: Chryseobacterium sp. HMWF001

ncbi_submitter: University of Illinois


ncbi_isolation_source: Pooled pig faecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Oklahoma


ncbi_isolation_source: colon

ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: China: Tianjin

ncbi_submitter: China Agricultural University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Hymenobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: South Korea: Gangwon province

ncbi_isolation_source: plant

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Puia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Yersinia pestis CMCC51020

ncbi_submitter: Beijing Genomics Institute


ncbi_isolation_source: Rectum

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Wadsworth Center - NYS DOH


ncbi_assembly_name: assembly Coobra isolate 15

ncbi_isolation_source: Alpha-amylase enzym 4g (Coobra)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Sciensano


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Haemophilus seminalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bacillota bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Estonia: Polvamaa; Kooraste

ncbi_isolation_source: feces


ncbi_country: Italy

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. BI3

ncbi_submitter: INAIL-Research Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BI3


ncbi_country: China

ncbi_organism_name: Janthinobacterium violaceinigrum

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: Tissue Right Shoulder COLLAR MEMBRANE

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_assembly_level: Chromosome

ncbi_country: Australia

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: ASCC 290

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces wuyuanensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Terrimicrobiaceae bacterium


ncbi_organism_name: Staphylococcus epidermidis IS-K

ncbi_strain_identifiers: IS-K

ncbi_submitter: J. Craig Venter Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Streptomyces viridosporus T7A

ncbi_submitter: KAIST


ncbi_organism_name: Marinifilaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Gordonibacter pamelaeae

ncbi_submitter: University of Chicago


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Neisseriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: BGI


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: USA: IA

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: Saudi Arabia: Malaz area; Riyadh

ncbi_organism_name: Arcanobacterium haemolyticum

ncbi_strain_identifiers: SCDR 1

ncbi_submitter: King Saud University


ncbi_country: Canada

ncbi_submitter: University of Guelph


ncbi_assembly_name: Rumen uncultured genome RUG10890

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Salmonella enterica CVM N46812 v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Chicken Breast

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Russia

ncbi_isolation_source: not known


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Abiotrophia defectiva


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Harbin; Heilongjiang

ncbi_isolation_source: Head of the ant

ncbi_organism_name: Psychrobacillus lasiicapitis

ncbi_submitter: University of Granada


ncbi_country: South Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. 852002-10350_SCH5691597


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Mesoaciditogaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Kangwon National University


ncbi_country: Czech Republic

ncbi_isolation_source: surface water

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: EMG


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudoclavibacter sp. AY1H1

ncbi_submitter: Oregon State University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Poriferihabitaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Actinomycetota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Paraburkholderia youngii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Fimbriimonadia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: Bremen; pond; freshwater sediment

ncbi_isolation_source: autotrophic NRFeOx enrichment culture BP inoculated with freshwater sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_assembly_name: Rumen uncultured genome RUG13700

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: CSIR-NCL


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Gallionella sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Tanzania

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__ant endosymbionts;g__Candidatus Blochmanniella;x__unclassified Candidatus Blochmanniella;s__Blochmannia endosymbiont of Camponotus sp.


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Teagasc Food Research Centre, Ireland


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Pseudomonas ficuserectae

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas ficuserectae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Xinjiang Province

ncbi_isolation_source: rhizosphere of Ephedra

ncbi_organism_name: Variovorax sp. MHTC-1

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_country: USA: Nebraska

ncbi_organism_name: Moraxella bovis

ncbi_submitter: USDA/ARS


ncbi_organism_name: Butyribacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence and no molasses

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Korea: Jinju

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_assembly_name: IMG-taxon 2671180068 annotated assembly

ncbi_organism_name: Saccharopolyspora shandongensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: South Africa: North West Province

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Agriculture research council


ncbi_organism_name: Sphingorhabdus lacus

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Ontario

ncbi_isolation_source: Ground Beef

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Canadian Food Inspection Agency


ncbi_assembly_name: Rumen uncultured genome RUG674

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: GA

ncbi_isolation_source: stream

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: Canada: Alberta

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Streptomyces sp. NPDC047434

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: unknown

ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG12556

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: South Africa

ncbi_isolation_source: raw chicken

ncbi_organism_name: Chryseobacterium vrystaatense

ncbi_submitter: GCAT-SEEK


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-766

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: hospital environment

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of aberdeen


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Tepidibacter sp. Z1-5

ncbi_submitter: Zhejiang University


ncbi_organism_name: Roseovarius sp. EC-HK134

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_organism_name: uncultured Schleiferiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Candidatus Obscuribacter sp.

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;x__unclassified Candidatus Obscuribacter;s__Candidatus Obscuribacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: rumen

ncbi_organism_name: Cyanobacteria bacterium UBA2892

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA2892


ncbi_country: United Kingdom

ncbi_isolation_source: kidney

ncbi_organism_name: Leptospira interrogans serovar Copenhageni

ncbi_submitter: University of Agriculture in Krakow


ncbi_isolation_source: feed

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: ANSES


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Slovakia: Lehota pod Vtacnikom

ncbi_isolation_source: milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Escherichia coli ETEC H10407

ncbi_strain_identifiers: ETEC H10407

ncbi_submitter: Wellcome Trust Sanger Institute

ncbi_type_material_designation: assembly designated as clade exemplar


ncbi_organism_name: Blastocatellia bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tongji University


ncbi_country: Pacific Ocean:East Pacific polymetallic nodule region

ncbi_isolation_source: sediment

ncbi_organism_name: Croceicoccus marinus

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Rhodothermia bacterium

ncbi_submitter: Monash University


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: USA: Georgia

ncbi_isolation_source: freshwater lake mesocosm spiked with pig8 feces day 7

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptomyces sp. BBFR102

ncbi_submitter: University of Freiburg


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Prolixibacteraceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Methylovirgula sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Neolewinella sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Christensenellales bacterium


ncbi_isolate: Calothrix CCY 0018

ncbi_organism_name: Calothrix sp. CCY 0018

ncbi_strain_identifiers: Calothrix CCY 0018

ncbi_submitter: royal netherlands institute for sea research (nioz)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Calotrichaceae;g__Calothrix;x__unclassified Calothrix;s__Calothrix sp. CCY 0018


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of South Florida


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Salmonella sp. ZJHZ20_0067

ncbi_submitter: Zhejiang university


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-2173

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Paracoccaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Geobacter sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: South Korea: Seoul

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli O157

ncbi_submitter: Korea National Institute of Health, Korea Centers for Disease Control & Prevention


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Cyclophora punctaria


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Goat raw milk Rocamadour

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Brigham Young University


ncbi_organism_name: Candidatus Thiodiazotropha lotti

ncbi_submitter: University of Vienna


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kitasatospora sp. NBC_01300

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: UIUC


ncbi_organism_name: Mycolicibacterium sphagni

ncbi_submitter: San Raffaele Scientific Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: China: Guizhou; Longli

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: Aachen

ncbi_isolation_source: Feces

ncbi_organism_name: Hominifimenecus microfluidus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: Moscow; ID

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Pseudomonas sp. H2

ncbi_submitter: University of Idaho


ncbi_country: China: Hangzhou

ncbi_submitter: China Agricultural University


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Afghanistan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Azorhizobium caulinodans

ncbi_submitter: Instituto de Salud Carlos III


ncbi_assembly_name: Rumen uncultured genome RUG14872

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: OCS155 cluster bacterium AG-333-G23

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__unclassified Actinomycetes;x__marine Actinobacteria clade;s__OCS155 cluster bacterium AG-333-G23


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Burr Oak Reservoir; Ohio

ncbi_isolation_source: enrichment culture from freshwater sediment

ncbi_organism_name: Nitrospira sp. BO4

ncbi_submitter: Miami University


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: environmental

ncbi_organism_name: Paenibacillus sp. N3.4

ncbi_submitter: Kingston University London, United Kingdom


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Ghana: Korle Bu

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: glacial sediment

ncbi_organism_name: Rhodococcus sp. H29-C3

ncbi_submitter: Yildiz Technical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. H29-C3


ncbi_country: Saudi Arabia: Kebrit deep brine-seawater interface; Red Sea

ncbi_isolation_source: brine-seawater interface

ncbi_organism_name: Guyparkeria sp. XI15

ncbi_submitter: Red Sea Research Center, Saudi Arabia


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Auckland


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China:Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Bacillus cereus group sp. MG4

ncbi_submitter: Korea Food Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MG4


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: feces

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: University of Bern


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter courvalinii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Methylobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Brevundimonas sp. CEF1

ncbi_submitter: Hebei University


ncbi_organism_name: uncultured Schaedlerella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0035

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Finland: Baltic Sea; Archipelago of Stockholm

ncbi_isolation_source: freshwater

ncbi_organism_name: Nodularia sphaerocarpa CS-585

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_organism_name: Salmonella sp. NW458

ncbi_submitter: Sichuan University


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: Dye waste water pond

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: University of Lagos, Faculty of Science


ncbi_country: Spain: Madrid

ncbi_isolation_source: healthy skin

ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Aarhus University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Gloeomargarita sp. DG02_4_bins_56

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China

ncbi_organism_name: Lacticaseibacillus paracasei subsp. paracasei

ncbi_submitter: Bright dairy research institute


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Tanzania

ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_strain_identifiers: NCPPB 1680

ncbi_submitter: University of Exeter


ncbi_country: France

ncbi_isolation_source: sourdough bread

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CIRM-BIA 653

ncbi_submitter: Brigham Young University


ncbi_isolation_source: water

ncbi_organism_name: Prochlorococcus marinus str. MU1416

ncbi_submitter: Xiamen University


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 138 (4-6066704)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 138 (4-6066704)


ncbi_country: USA: San Francisco

ncbi_submitter: Santa Clara University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: IA

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Syntrophorhabdus sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Zhejiang Province

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Zhejiang University


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: soil organic matter[ENVO:04000008]

ncbi_organism_name: Halomonas sp. ISL-60

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Chthoniobacterales bacterium


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Groningen


ncbi_organism_name: Ligilactobacillus animalis

ncbi_submitter: University of California Irvine


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Hospital surface

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Industrial ABE fermentation

ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: LanzaTech Inc


ncbi_country: Colombia: Cundinamarca; Mosquera

ncbi_isolation_source: lechera

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CORPOICA


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium


ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Enterovibrio baiacu

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_submitter: University of Oviedo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Salmonella sp. SJTUF15580

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Limnospira platensis PCC 7345

ncbi_submitter: University of Gdansk


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_country: China: Tengchong

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Heilongjiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay warer

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Priestia megaterium DSM 319

ncbi_strain_identifiers: DSM 319

ncbi_submitter: Technical University Braunschweig

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;s__Priestia megaterium;x__Priestia megaterium DSM 319


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangdong

ncbi_isolation_source: citrus phyllosphere

ncbi_organism_name: Curtobacterium citri

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA

ncbi_isolation_source: ileum

ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: University of Minnesota


ncbi_country: China: Xuzhou

ncbi_isolation_source: urine

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Lebanon

ncbi_isolation_source: clinical

ncbi_submitter: Lebanese American University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: surface water

ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: NAK 201

ncbi_submitter: Wageningen Plant Research


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: mice gut

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Institut Pasteur


ncbi_country: USA: Wind Cave National Park; South Dakota

ncbi_organism_name: Achromobacter sp. SD115

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Alberta


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AF16-50

ncbi_submitter: BGI


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Colorado State University


ncbi_submitter: Prince of Songkla University


ncbi_country: Niger

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Bradyrhizobium oligotrophicum

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Hellea sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter hepaticus ATCC 51449

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: EMG


ncbi_country: China: henan province

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus pluranimalium

ncbi_submitter: Henan Agricultural University


ncbi_country: USA: Alachua

ncbi_isolation_source: feces

ncbi_submitter: University of Florida


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: New Zealand: Christchurch

ncbi_submitter: University of Canterbury


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Nanjing university


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Rhone-Alpes

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: USA

ncbi_organism_name: Salmonella bongori

ncbi_submitter: CDC


ncbi_isolation_source: liver

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: Germany

ncbi_isolation_source: half milk sample

ncbi_organism_name: Mycoplasma mycoides

ncbi_submitter: Landesbetrieb Hessisches Landeslabor (LHL)


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia: Nizhny Novgorod

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Japan: Osaka

ncbi_isolation_source: clinic

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Municipal ceter for disease control & prevention


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_country: China: Zhejiang

ncbi_isolation_source: lake-wetland

ncbi_submitter: Zhejiang A & F University


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Minthenecus merdequi

ncbi_submitter: Quadram Institute


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_organism_name: Akkermansia sp.


ncbi_country: Romania: Bucharest

ncbi_isolation_source: Enviromental

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Pseudomonas rhodesiae


ncbi_country: Poland

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Chlamydia gallinacea

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Madrid

ncbi_isolation_source: Prothesis

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China

ncbi_isolation_source: pickle

ncbi_organism_name: Lacticaseibacillus sp. 866-1

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: isolated from Haemaphysalis hystricis

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_organism_name: Streptomyces tauricus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Texas Panhandle

ncbi_isolation_source: feces

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Texas Tech University


ncbi_country: Brazil

ncbi_strain_identifiers: Sao Paulo

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;g__Liberibacter;s__Candidatus Liberibacter americanus;x__Candidatus Liberibacter americanus str. Sao Paulo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Tidjanibacter sp.


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_submitter: Center for Microbial Communities


ncbi_country: Bangladesh

ncbi_organism_name: Vibrio cholerae


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Vibrio comitans

ncbi_strain_identifiers: CAIM 1813

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Puniceispirillales bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__Candidatus Puniceispirillales bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institutte


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Calditrichia bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Candidatus Onthousia faecigallinarum

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Onthousia;s__Candidatus Onthousia faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Onthousia;s__Candidatus Onthousia faecigallinarum


ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: Tokyo University of Marine Science and Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: Sweden: Stordalen mire

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Cryosericum hinesii

ncbi_submitter: The Ohio State University

ncbi_taxonomy: d__Bacteria;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;s__Candidatus Cryosericum hinesii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Candidatus Cryosericota;c__Candidatus Cryosericia;o__Candidatus Cryosericales;f__Candidatus Cryosericaceae;g__Candidatus Cryosericum;s__Candidatus Cryosericum hinesii


ncbi_country: Thailand: Phatthalung

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Heilongjiang

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: uncultured Methylomirabilota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__environmental samples;s__uncultured Methylomirabilota bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Proximal colon


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: intact colon fecal sample

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: MFS 25

ncbi_submitter: USDA


ncbi_organism_name: Streptococcus sp. E24BD

ncbi_submitter: China Agricultural University


ncbi_country: China: Sichuan province

ncbi_isolation_source: a feces sample of chicken origin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: South Korea: Seoul

ncbi_organism_name: Microbacterium sp. E22

ncbi_submitter: Korea University


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EBI


ncbi_country: Spain

ncbi_isolation_source: foul brood

ncbi_organism_name: Paenibacillus larvae subsp. larvae

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Mesotoga prima

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Vienna


ncbi_submitter: ANSES Ploufragan


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Czech Republic

ncbi_isolation_source: rumen fluid

ncbi_organism_name: Pseudobutyrivibrio ruminis

ncbi_submitter: Institute of Animal Physiology and Genetics


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Spain: Asturias

ncbi_organism_name: Propionibacterium sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pennsylvania; Centralia

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Michigan State University


ncbi_isolation_source: gut

ncbi_submitter: University of Alabama at Birmingham


ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: icddrb


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Capian Sea

ncbi_organism_name: Actinobacteria bacterium casp-actino2

ncbi_submitter: University of Tehran


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 159

ncbi_submitter: SC


ncbi_country: Israel

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: KOlimastIR


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: raw meat-based diets for companion animals

ncbi_submitter: University of Zurich


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: freshwater MAG --- KT1_bin-525

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Syntrophomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Florida

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Czech Republic: Moravia

ncbi_submitter: Palacky University Olomouc


ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Sydney

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sydney


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA4949

ncbi_submitter: University of Queensland


ncbi_country: China: Hangzhou; Zhejiang

ncbi_isolation_source: vaginal fluids

ncbi_organism_name: Mobiluncus mulieris

ncbi_submitter: China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University College London (UCL)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Waterloo


ncbi_assembly_name: Rumen uncultured genome RUG14230

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Ausgem


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Germany

ncbi_organism_name: Prescottella equi

ncbi_submitter: The University of Edinburgh


ncbi_country: China: Suzhou

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Omaha; Nebraska

ncbi_organism_name: Limosilactobacillus rudii

ncbi_submitter: University of Alberta


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Desulfobacterales bacterium


ncbi_organism_name: Acidovorax sp. LjRoot117

ncbi_submitter: Aarhus University


ncbi_organism_name: Rhizobium sp. Q54


ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: Penn State University


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Poriferihabitaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-a_bin-489

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus malodoratus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Dichelobacter nodosus VCS1703A

ncbi_submitter: TIGR


ncbi_organism_name: Paracoccaceae bacterium


ncbi_country: USA

ncbi_isolation_source: Breeder

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Missouri


ncbi_organism_name: Gemmiger formicilis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil: Amazonas

ncbi_isolation_source: Rectal swab sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_isolation_source: fecal sample

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_organism_name: Helicobacter pylori SA169C

ncbi_submitter: MHH


ncbi_country: Haiti: Cholera Treatment Center; Gressier

ncbi_isolation_source: Stool; Clinical

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_submitter: University of Alberta


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Monash University


ncbi_country: Netherlands

ncbi_isolation_source: decaying wood

ncbi_organism_name: Acidicapsa ligni

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Japan

ncbi_isolation_source: dust

ncbi_organism_name: Deinococcus aerius

ncbi_submitter: Ion Beam Mutagenesis, Takasaki Advanced Radiation Research Institute, Quantum Beam Science Research Directorate, National Institutes for Quantum and Radiological Science and Technology


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_organism_name: Helicovermis profundi

ncbi_submitter: Kyoto University


ncbi_organism_name: Olsenella sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Denmark: Esbjerg E

ncbi_isolation_source: activated sludge from EsbE_18-Q3-R3-47

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_submitter: Center for Microbial Communities


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_submitter: SC


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Haiti: Lassalle

ncbi_isolation_source: Water; Environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_organism_name: Enterococcus faecalis EnGen0092

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Togo

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 2007461

ncbi_submitter: IGS


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-3-2

ncbi_submitter: Curtin University


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Bacteroides uniformis CAG:3

ncbi_submitter: DTU


ncbi_country: South Africa: Pietermaritzburg

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Mycoplasmopsis synoviae


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Desulfobulbus propionicus

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Iran

ncbi_organism_name: Mycobacterium tuberculosis NRITLD21


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Fujian

ncbi_isolation_source: UPEC

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: USA: Florida

ncbi_isolation_source: Clinical

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Exeter University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Chile

ncbi_strain_identifiers: CFBP 5817

ncbi_submitter: CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CFBP 5817


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: United Kingdom: Taunton

ncbi_isolation_source: stool

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O127:H6;x__Escherichia coli O127:H6 str. E2348/69;x__Escherichia coli O127:H6 str. E2348/69 substr. UMD753


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Saccharospirillum sp.

ncbi_submitter: Academia Sinica