ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: marine college, shandong university


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Canada: Gault Nature Reserve

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: University of Montreal


ncbi_assembly_level: Scaffold

ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Chlorobium sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Streptococcus agalactiae GB00264

ncbi_submitter: The J. Craig Venter Institute


gtdb_representative: t

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_level: Complete Genome

ncbi_country: China

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: hsryfm 1301

ncbi_submitter: Yangzhou University


ncbi_country: Kuwait: Kuwait City; Kuwait Desert

ncbi_isolate: KUW bin2

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: KUW bin2

ncbi_submitter: Monash University


ncbi_organism_name: Neorhizobium petrolearium

ncbi_submitter: KAUST


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: University of California Berkeley


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Bacterial and Parasitic Diseases Research Division, National Institute of Animal Health


ncbi_country: Thailand: Phetchaburi

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Faculty of Fisheries, Kasetsart University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Actinomycetales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Paenibacillus apiarius

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Sheffield

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia: Samara

ncbi_organism_name: Chryseobacterium timonianum

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: France

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: France: Savoie; La-Motte-Servolex

ncbi_isolation_source: lettuce field

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_submitter: University Claude Bernard Lyon 1


ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H85008

ncbi_submitter: Broad Institute


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 84

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Center for Bioinformatics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Turkey: Adana

ncbi_isolation_source: Orchard

ncbi_submitter: University of Toronto Mississauga


ncbi_isolation_source: final product

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Pseudomonas sp. WHRI 8519

ncbi_strain_identifiers: WHRI 8519

ncbi_submitter: University of Exeter


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Delongbacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Delongiibacteriota;x__unclassified Candidatus Delongbacteria;s__Candidatus Delongbacteria bacterium


ncbi_country: USA: CA; Davis

ncbi_submitter: Evolve Biosystems Inc.


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: INRA


ncbi_country: Greece: Asprovolta

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Bacillus cereus group sp. BC62

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC62


ncbi_isolation_source: human skin

ncbi_organism_name: Hoylesella buccalis

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Nocardia pseudobrasiliensis

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Chromosome

ncbi_country: Thailand: Yasothon

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Bristol


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Salinispora mooreana


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Chlorobiales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;x__environmental samples;s__uncultured Chlorobiales bacterium


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Brachybacterium kimchii

ncbi_submitter: World Institute of Kimchi


ncbi_country: United Kingdom: London

ncbi_isolation_source: stool

ncbi_organism_name: Shigella flexneri 3a

ncbi_submitter: University of Bath


ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_country: China:Xuchang city; Henan province

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Henan Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Escherichia coli

ncbi_submitter: EMG


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Teagasc


ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterobacter cloacae complex sp. 383C1

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 383C1


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__candidate division WS6 bacterium GW2011_WS6_33_547


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Tepidimonas sp. HKU78

ncbi_submitter: HKU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Tepidimonas;x__unclassified Tepidimonas;s__Tepidimonas sp. HKU78


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Universidad del Quindio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Brachymonas wangyanguii

ncbi_submitter: Shanxi Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lautropia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nitrospina sp.

ncbi_submitter: EMG


ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: cheese

ncbi_organism_name: Corynebacterium flavescens

ncbi_strain_identifiers: CCUG 28791T

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from newly infected colony B

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Syntrophobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 13,23:b:-


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Blautia sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stony Brook University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: China: Liaoning

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Denmark

ncbi_isolation_source: biological fluid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Tunisia: Cap Bon

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: CBBC


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Listeria monocytogenes


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_submitter: Washington University


ncbi_country: Sweden: Vastra Gotaland

ncbi_isolation_source: Water supply

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: the Public Health Agency of Sweden


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Paris-Sud


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Emek Medical center


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_isolation_source: Faeces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_country: USA: California

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Lucinoma annulata)


ncbi_country: USA: Caldonia; Minnesota

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Mycolicibacterium phlei

ncbi_submitter: Uppsala University


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_country: China: Shenzhen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Southern University of Science and Technology


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter peroxydans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Streptomyces sp. SID4950

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen University & Research


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Puniceibacterium sp.

ncbi_submitter: McGill University


ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lichenihabitans sp.

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom: Addenbrooke s hospital

ncbi_isolation_source: UC fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: San Diego State University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Carboxylicivirga sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- I-2_bin-046

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 934

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: salt crust

ncbi_organism_name: Cyanobacteria bacterium QH_7_48_89

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium QH_7_48_89


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Bicetre hospital


ncbi_country: USA: VA

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterococcus avium


ncbi_organism_name: Marinitoga sp. 1155

ncbi_submitter: University of Alberta


ncbi_organism_name: Agrobacterium sp. CCNWLW32

ncbi_submitter: Northwest A&F University


ncbi_country: China

ncbi_isolation_source: excrement

ncbi_organism_name: Salmonella enterica

ncbi_strain_identifiers: ZLQ

ncbi_submitter: The Affiliated People Hospital of Jiangsu University


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Streptomyces sp. NPDC059904

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Flagellimonas oceanensis


ncbi_organism_name: uncultured Caldisericales bacterium


ncbi_organism_name: Enterobacter sp. 22104

ncbi_submitter: Yantai University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: sheep gut metagenome


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Streptomyces sp. NPDC086993


ncbi_submitter: The University of Auckland


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: Zooplankton

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Ecole Centrale de Lyon

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: AAFC


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Rhodobacterales bacterium UBA4593

ncbi_submitter: University of Queensland


ncbi_country: Ethiopia

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: University of Exeter


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: SP

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: uncultured Candidatus Brocadia sp.

ncbi_submitter: Lund University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__environmental samples;s__uncultured Candidatus Brocadia sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangdong province

ncbi_isolation_source: soil

ncbi_organism_name: Protaetiibacter mangrovi

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Candidatus Symbiobacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Greece: Epirus

ncbi_isolation_source: artisanal Greek Feta cheese

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Pseudoalteromonas sp. P80D2

ncbi_submitter: Universidad Autonoma del Estado de Morelos


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: South Korea

ncbi_isolation_source: Yellow sea

ncbi_organism_name: Parasphingorhabdus flavimaris

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Chlamydia pecorum

ncbi_submitter: University of Zurich


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Shizuishan

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: Spain: Monserrat; Valencia

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium valentinum

ncbi_submitter: UPM


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: USA: MD

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: US Food and Drug Administration


ncbi_country: China

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_submitter: Zhujiang Hospital


ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Achromobacter xylosoxidans


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_assembly_name: Escherichia coli CVM N34564PS v1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N34564PS

ncbi_submitter: FDA


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Italy

ncbi_isolation_source: raw milk

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Bdellovibrionales bacterium


ncbi_organism_name: Streptococcus mutans


ncbi_assembly_name: IMG-taxon 2639762577 annotated assembly

ncbi_organism_name: Pseudomonas trivialis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan: Shimokita Peninsula

ncbi_isolation_source: Coal Bed

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Shanghai Ocean University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Harvard University


ncbi_country: South Korea: Byeonsan Peninsula

ncbi_isolation_source: soil

ncbi_organism_name: Vreelandella salicampi

ncbi_submitter: Third Institute of Oceanography,Ministey of Natura


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Candidatus Geohabitans tengchongensis

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Humicultoraceae;g__Candidatus Geohabitans;s__Candidatus Geohabitans tengchongensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Humicultoraceae;g__Candidatus Geohabitans;s__Candidatus Geohabitans tengchongensis


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Zhejiang university


ncbi_organism_name: Vibrio sp. S457-15

ncbi_submitter: Health Canada


ncbi_country: Poland

ncbi_organism_name: Citrobacter sp. wls706

ncbi_submitter: NanKai universit


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Puniceicoccaceae bacterium MED-G31

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: USA: SD

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Clostridium sp. CAG:138

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany: South-West Germany

ncbi_isolation_source: water

ncbi_organism_name: Eubacterium sp. UBA2086

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. UBA2086


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Dokdonella sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWA2_40_14

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWA2_40_14


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Marinobacter sp. JSM 1782161

ncbi_submitter: Jishou University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: aspirate; left breast

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_isolation_source: plaque-purified isolate from stock culture

ncbi_organism_name: Chlamydia muridarum str. Nigg

ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia muridarum;x__Chlamydia muridarum str. Nigg


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Colombia: Tunja

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Suriname: Paramaribo

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Saccharopolyspora rosea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Netherlands

ncbi_isolate: Klebsiella pneumoniae

ncbi_isolation_source: human

ncbi_strain_identifiers: Klebsiella pneumoniae

ncbi_submitter: Erasmus University Medical Center


ncbi_country: Canada: Ontario

ncbi_isolation_source: plant matter [ENVO:01001121]

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Jeonbuk National University


ncbi_country: USA: New Jersey

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sulfurihydrogenibium azorense

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Candidatus Gallimonas sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;x__environmental samples;s__uncultured Candidatus Gallimonas sp.


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_organism_name: Parvibaculum sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Faecalimonas sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 2; Comp 2; UV layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5389

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5389


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: spleen

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Germany

ncbi_isolation_source: Packed chicken meat

ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridia bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus benefaciens

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus benefaciens


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Arenicella sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Trinidad and Tobago

ncbi_isolation_source: Medical/diagnostic sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_country: China: Fujian

ncbi_isolation_source: gut

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Third Institute of Oceanography, SOA

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_submitter: University of Edinburgh


ncbi_country: Nigeria

ncbi_isolation_source: hospital-2; ICU; urine #39

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Auburn University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Dorea sp. CAG:105

ncbi_submitter: DTU


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pseudobacteriovorax antillogorgiicola

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: France: Paris

ncbi_isolation_source: midstream urine

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: aphp


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: MS

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sciensano


ncbi_organism_name: Enterococcus faecium VRE1044

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_country: Canada: Ontario

ncbi_isolation_source: urine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: Jiangxi

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolate: chicken fecal

ncbi_strain_identifiers: chicken fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan: Chiayi

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: Finland

ncbi_submitter: University of Helsinki


ncbi_country: Italy

ncbi_isolation_source: Rectal swab

ncbi_submitter: Sapienza University of Rome


ncbi_isolation_source: vagina

ncbi_organism_name: Anaerococcus vaginimassiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Streptomyces sp. NPDC001856

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Qiqihaer

ncbi_isolation_source: soil

ncbi_organism_name: Nonomuraea aurantiaca

ncbi_submitter: Northeast Agriculutural University


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics


ncbi_isolation_source: Bulk soil

ncbi_organism_name: Burkholderia lata

ncbi_submitter: LM-UGent


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: China: Hubei

ncbi_isolation_source: arsenic contaminated soil

ncbi_organism_name: Chitinophaga lutea

ncbi_submitter: Huzhong Agricultrural University


ncbi_country: South Korea

ncbi_isolation_source: ganjang; Korean traditional soy sauce

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Chung-Ang Univiersity


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lysinibacillus sp.

ncbi_submitter: EMG


ncbi_country: France

ncbi_isolation_source: blood culture

ncbi_submitter: CHU de Bicetre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Syntrophaceae bacterium UBA6252

ncbi_submitter: University of Queensland


ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Falsiroseomonas sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JMI Laboratories


ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella boydii 08-0280

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Marinobacterium iners

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterobacter sp. CRENT-193

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Actinomyces dentalis


ncbi_isolation_source: cattle feces

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Curtin University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Candidatus Amesbacteria bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Amesiibacteriota;x__unclassified Candidatus Amesbacteria;s__Candidatus Amesbacteria bacterium


ncbi_country: China: Xinjiang

ncbi_isolation_source: root

ncbi_organism_name: Microbacterium karelineae

ncbi_submitter: Tarim University


ncbi_country: Brazil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: Spain:Blanes Bay Microbial Observatory; Mediterranean Sea

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; surface seawater

ncbi_organism_name: Pelagibacterales bacterium SAG-MED39

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium SAG-MED39


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: liver equine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Escherichia coli KTE214

ncbi_submitter: Broad Institute


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-121


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_assembly_name: freshwater MAG --- Umea3p1_bin-0255

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Catenibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: MI

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South Dakota State University


ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: Poland

ncbi_organism_name: Citrobacter sp. wls758

ncbi_submitter: NanKai universit


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Aquificota bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__environmental samples;s__uncultured Candidatus Rokubacteria bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Thiotrichaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Streptomyces eurythermus

ncbi_submitter: Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Tel Aviv University


ncbi_submitter: Hazara University


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Proteobacteria bacterium UBA4455

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA4455


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Black Sea sulfidic water cellulose enrichment

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Phaeodactylibacter sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Finland

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: soil

ncbi_organism_name: Lysobacter soli

ncbi_submitter: Center for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: Northumbria University


ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Texas

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AM53-12

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Shanghai Ocean University


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Warm Mineral Springs; FL

ncbi_isolation_source: single cell amplified by MDA; Sediments of Warm Mineral Spring

ncbi_organism_name: Achromatium sp. WMS2

ncbi_submitter: Pennsylvania State University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Slovenia: Ihan; pig farm

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: University of Ljubljana


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Porphyromonas levii

ncbi_submitter: University of Calgary


ncbi_country: Lebanon

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: American University of Beirut


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_assembly_name: freshwater MAG --- MJ120620A_bin-576

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Switzerland

ncbi_isolation_source: raw milk cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agroscope


ncbi_isolation_source: Primary rapid sand filter

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Radboud University


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Universidad de Antioquia


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: India: Chandigarh

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P11 CL A21

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: municipal wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: USA

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: NCTR/FDA


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Leisingera sp. XS_AS12

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolate: S27 bin 9

ncbi_organism_name: Nostoc sp.

ncbi_strain_identifiers: S27 bin 9

ncbi_submitter: Duke University


ncbi_country: Italy

ncbi_isolation_source: cured laboratory strain

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Streptomyces sanyensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Liaoning

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Montiers

ncbi_isolation_source: Microscale soil grain

ncbi_organism_name: Streptomyces sp. RLB1-8

ncbi_submitter: Universite de Lorraine - Institut National de la Recherche Agronomique


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Schaedlerella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: Turkey

ncbi_isolation_source: food; beverage

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Erciyes University


ncbi_country: China: Tianjin

ncbi_isolation_source: oil field

ncbi_organism_name: Paraburkholderia fungorum

ncbi_submitter: Tianjin University of Technology


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Vienna


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB08-014

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas sp. JAI120

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: France

ncbi_isolation_source: feces

ncbi_submitter: Anses


ncbi_country: USA: Alabama

ncbi_isolation_source: rhizosphere of the salt marsh grasses

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_isolate: AOP38_B2_surf _bin _25

ncbi_strain_identifiers: AOP38_B2_surf _bin _25

ncbi_submitter: Genoscope


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom: Dorset

ncbi_organism_name: Pseudomonas sp. PA-7-1E

ncbi_submitter: NIAB East Malling Research


ncbi_country: France: Poitou-Charentes

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Citrobacter telavivensis

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EBI


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Antarctica

ncbi_isolation_source: Soil

ncbi_organism_name: Sphingomonas sp. So64.6b

ncbi_submitter: Network for Extreme Environment Research


ncbi_country: Taiwan

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Planktophila lacus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila lacus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila lacus


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Jersey

ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: University of Bath


ncbi_organism_name: Mycolicibacterium sp. ELW1

ncbi_submitter: North Carolina State University


ncbi_organism_name: Roseovarius sp. B08

ncbi_submitter: IAMM (Interactions Among Marine Microbes)


ncbi_organism_name: Vibrio olivae

ncbi_strain_identifiers: CECT 8064

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Candidatus Brocadiaceae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__unclassified Candidatus Brocadiaceae;s__Candidatus Brocadiaceae bacterium


ncbi_isolate: AOP35_01H_surf _bin _27

ncbi_organism_name: Canibacter sp.

ncbi_strain_identifiers: AOP35_01H_surf _bin _27

ncbi_submitter: Genoscope


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: The Ohio State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: INTERNATIONAL HELLENIC UNIVERSITY


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Schaalia odontolytica

ncbi_submitter: Kyung Hee University


ncbi_organism_name: uncultured Leptospirales bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: Tibet Agricultural and Animal Husbandry College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: Chile: Tarapaca Salar de Huasco

ncbi_isolation_source: shallow sediments of the Salar de Huasco lagoon

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Bangladesh: Chittagong

ncbi_isolation_source: Wastewater from Chattogram Medical College Hospital

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Bangladesh Council of Scientific and Industrial Research (BCSIR)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_country: USA: Iowa

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_organism_name: Niallia taxi

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020016937

ncbi_submitter: Broad Institute


ncbi_country: USA: Texas

ncbi_isolation_source: breast milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: WRAIR


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: blood

ncbi_submitter: Duke University


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Shewanella colwelliana ATCC 39565

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Gemella sp. GH3.1

ncbi_submitter: King's College London


ncbi_country: China: Zhengzhou

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Nanjing Agricultural University


gtdb_type_species_of_genus: t

ncbi_isolation_source: Urine

ncbi_type_material_designation: assembly designated as neotype


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: human nose

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Tuebingen


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: SD

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium marquesiae


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_submitter: University of Waterloo


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: fresh water

ncbi_organism_name: Pseudomonas sp. FH1

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas fluorescens group;x__unclassified Pseudomonas fluorescens group;s__Pseudomonas sp. FH1


ncbi_country: Italy

ncbi_isolation_source: nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_country: Ireland: Dublin

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Maynooth University


ncbi_country: USA: Chicago

ncbi_isolation_source: yogurt

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Norway: Viken

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: south china agriculture university


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Bangladesh

ncbi_isolation_source: water sample

ncbi_organism_name: Vibrio cholerae O1 str. EM-1536

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. EM-1536


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Canada: Calgary

ncbi_isolation_source: Vaginal rectal screen

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: MSU


ncbi_strain_identifiers: CVUAS 11331

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_country: China: Fujian

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Erythrobacter mangrovi

ncbi_submitter: zhejiang university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_organism_name: Citrobacter youngae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Denmark

ncbi_organism_name: Legionella pneumophila subsp. fraseri

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Candidatus Ozemobacteraceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;c__Candidatus Ozemobacteria;x__Candidatus Ozemobacterales;f__Candidatus Ozemobacteraceae;x__unclassified Candidatus Ozemobacteraceae;s__Candidatus Ozemobacteraceae bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Collinsella sp. OM08-14AT

ncbi_submitter: BGI


ncbi_country: Ireland: Cork

ncbi_isolation_source: dairy

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_country: Netherlands: Drentse A

ncbi_isolation_source: grasslands

ncbi_organism_name: Neobacillus vireti

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Listeria monocytogenes SLCC2479

ncbi_submitter: ERA-NET / Spatelis


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Porcinotec Co., Ltd


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Paenibacillaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2024EL-00232


ncbi_country: Germany: Freising

ncbi_isolation_source: Gut content

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Paenibacillus lautus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Candidatus Onthocola stercorigallinarum

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Onthocola;s__Candidatus Onthocola stercorigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Onthocola;s__Candidatus Onthocola stercorigallinarum


ncbi_organism_name: Chroococcidiopsis sp. SAG 2025

ncbi_submitter: Freie Universitat Berlin


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-33

ncbi_submitter: Arkin Lab


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: EPFL


ncbi_submitter: Quadram Institutte


ncbi_isolate: Psychrobacter immobilis 252

ncbi_isolation_source: skin of skate

ncbi_organism_name: Psychrobacter immobilis

ncbi_strain_identifiers: Psychrobacter immobilis 252

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Citrobacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolate: blood

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: blood

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_submitter: China-Japan Friendship Hospital


ncbi_isolation_source: cow dung

ncbi_submitter: Shanghai ocean university


ncbi_isolation_source: BAL

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Laboratory Bacteriology Research (LBR)


ncbi_country: Norway

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-0679

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Greece

ncbi_isolation_source: rectal

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: bioMerieux


ncbi_country: Namibia

ncbi_organism_name: Coxiella burnetii str. Namibia

ncbi_strain_identifiers: Namibia

ncbi_submitter: Coxiella Genome Sequencing Consortium (CGSC)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Mahidol University


ncbi_organism_name: Candidatus Nanopelagicus hibericus

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;s__Candidatus Nanopelagicus hibericus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;s__Candidatus Nanopelagicus hibericus


ncbi_country: Germany: Cologne

ncbi_isolation_source: abdomen

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Antarctica: James Ross Island

ncbi_isolation_source: sediment from stream

ncbi_organism_name: Flavobacterium circumlabens

ncbi_submitter: Masaryk University


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Wayne State University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Swab or Tube drainage Buttock

ncbi_submitter: Yonsei university college of medicine


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Dechloromonas agitata

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV193

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Capnocytophaga leadbetteri

ncbi_submitter: Hospital Sirio-Libanes


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_submitter: West China hospital of Sichuan university


ncbi_isolation_source: CEREMI

ncbi_organism_name: Escherichia coli


ncbi_country: China: Baekdu Mountain

ncbi_isolation_source: ginseng field

ncbi_organism_name: Ginsengibacter hankyongi

ncbi_submitter: Hankyong National University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Streptococcus danieliae

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Italy: Perugia

ncbi_isolation_source: Respiratory sample

ncbi_submitter: University of Genoa


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Salmonella sp. NW21

ncbi_submitter: Sichuan University


ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Lutimonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Alistipes putredinis


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: The Roslin Institute (University of Edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: San Leandro; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Victivallales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylocystis sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0052

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Aliiglaciecola sp. 3_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China:Zhejiang Maternal and Child Health Hospital

ncbi_isolation_source: healthy infant fecal samples

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Zhejiang Gongshang University


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Mahatma Gandhi University


ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: CCS 551

ncbi_submitter: University Medical Center Goettingen


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: uncultured Christensenellales bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_isolation_source: Liver tissue

ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: cold seep

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Australia

ncbi_isolation_source: urinary tract

ncbi_organism_name: Escherichia coli

ncbi_submitter: Curtin University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Ilumatobacter sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Comamonas aquatica

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA

ncbi_isolation_source: individually-maintained laboratory-adapted strain of PAO1 acquired from C. Manoil; Univ. of Washington

ncbi_organism_name: Pseudomonas aeruginosa PAO1

ncbi_submitter: University of Maryland, Baltimore


ncbi_country: Russia: Nizhny Novgorod

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: FLAV

ncbi_organism_name: Flavobacteriales bacterium

ncbi_strain_identifiers: FLAV

ncbi_submitter: Heleen Ouboter


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-WM

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Capnocytophaga cynodegmi

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: Japan:Hokkaido; Okoppe

ncbi_isolation_source: milk

ncbi_organism_name: Mycoplasmopsis californica

ncbi_submitter: National Institute of Animal Health, National Agriculture and Food Research Organization


ncbi_country: Chile: Puerto Montt; hospital

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universidad Autonoma de Chile


ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus tropicus

ncbi_submitter: BGI


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: Chicken Breast

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_isolation_source: single cell amplified by MDA; feces

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Haruko Takeyama Lab., Waseda University


ncbi_submitter: The Lu'an People's Hospital


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.