ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA: Delaware Bay

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: bay water summer N sample 29 PSU in greater than .8 micron size fraction

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Clemson University


ncbi_assembly_level: Contig

ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: Clostridium sp. 1xD42-85

ncbi_submitter: Chinese Academy of Science


gtdb_representative: t

ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gemmatimonadales bacterium UBA2982

ncbi_submitter: University of Queensland


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_submitter: University of Surrey


ncbi_assembly_level: Complete Genome

ncbi_country: China:loess plateau

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Science


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. AF23-6

ncbi_submitter: BGI


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Pelethomonas;s__Candidatus Pelethomonas intestinigallinarum


ncbi_country: USA: Lubbock; TX

ncbi_isolation_source: indwelling urinary catheter

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: National Center for Biotechnology Information

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: New York State

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: South Africa: Kruger National Park

ncbi_organism_name: Bacillus anthracis str. A0442

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. A0442


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Pseudomonas sp. Choline-02u-1

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces morookaense

ncbi_submitter: Northwest A&F University

ncbi_type_material_designation: assembly from type material


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0781

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: CA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Friedrich Schiller University Jena


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Lebanon

ncbi_organism_name: Shigella sp. SHS-10

ncbi_submitter: Lebanese American University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Loyola University

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_assembly_level: Chromosome

ncbi_assembly_name: IMG-taxon 2675902957 annotated assembly

ncbi_organism_name: Pseudomonas mediterranea

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptomyces lusitanus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Salmonella sp. M284

ncbi_submitter: Zhejiang University


ncbi_country: China: Jinan

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Streptomyces sp. NPDC020141

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia

ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: University of Southampton


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus sp. 2020WUSS084

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Streptomyces sp. NBC_01017

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Salmonella sp. NW1181

ncbi_submitter: Sichuan University


ncbi_organism_name: Lachnospira sp.


ncbi_organism_name: Cellulosimicrobium funkei


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: marine

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hangzhou Medical College


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: freshwater MAG --- C5coas_bin-2163

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_submitter: University of Wyoming


ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Uruguay: Montevideo

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KpPOST

ncbi_submitter: Facultad de Quimica


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: addis ababa university


ncbi_country: USA:Chicago; Lake Michigan

ncbi_isolation_source: Lake Michigan

ncbi_organism_name: Sphingomonas sp. LM7

ncbi_submitter: The University of Chicago


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Bacteroidetes bacterium 46-16

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium 46-16


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: Hospital Vall d Hebron (Barcelona)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_country: Portugal

ncbi_isolation_source: geothermally heated soil (acidic soil; solfataric soil)

ncbi_organism_name: Alicyclobacillus hesperidum subsp. aegles

ncbi_submitter: School of Marine Science and Technology, Tokai University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Hefei

ncbi_isolation_source: anal swabs

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: ICDC


ncbi_assembly_name: IMG-taxon 2667527406 annotated assembly

ncbi_organism_name: Albimonas pacifica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Balneola sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG11861

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: University of California, Berkeley


ncbi_country: Denmark

ncbi_isolation_source: Bacteremia

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Department of Molecular Medicine (MOMA) - Aarhus University Hospital


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Sphingomonas bacterium

ncbi_submitter: University of Colorado at Boulder


gtdb_type_species_of_genus: t

ncbi_country: USA

ncbi_isolation_source: Sea water aquarium outflow; La Jolla; California; U.S.A.

ncbi_organism_name: Bernardetia litoralis DSM 6794

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Bernardetiaceae;g__Bernardetia;s__Bernardetia litoralis;x__Bernardetia litoralis DSM 6794


ncbi_country: Canada: Quebec; Reservoir Choiniere

ncbi_isolation_source: non-axenic culture from freshwater

ncbi_submitter: Universite de Montreal


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Erysipelothrix rhusiopathiae SY1027

ncbi_submitter: Nanjing Agricultural University Bioinformatics Center


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Nebraska

ncbi_organism_name: Moraxella bovis

ncbi_submitter: USDA/ARS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermus composti

ncbi_strain_identifiers: NCAIM B.02340

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Ghana

ncbi_isolation_source: subgingival plaque

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Leptotrichia wadei


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Halanaerobiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: tissue sample from feedlot cattle

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Mesotoga sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Central venous access devices

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Beef biltong sold at a retail outlet

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: Umea University


ncbi_country: Australia: Adelaide

ncbi_isolation_source: urine

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: SAHMRI


ncbi_isolate: SPRUCE 560

ncbi_organism_name: Patescibacteria group bacterium

ncbi_strain_identifiers: SPRUCE 560

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: city university of hong kong


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA5261

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5261


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Vibrio proteolyticus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: France: Poitou-Charentes

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Streptomyces sp. NPDC048349

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S9

ncbi_organism_name: Erysipelotrichaceae bacterium


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_isolation_source: left breast

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Taipei Medical University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Qinzhou City

ncbi_isolation_source: root

ncbi_organism_name: Allorhizobium sonneratiae

ncbi_strain_identifiers: BGMRC 0089

ncbi_submitter: Guangxi Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC046860


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii AB_909-02-7

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: China: Beijing

ncbi_submitter: China CDC


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics


ncbi_country: India

ncbi_isolation_source: river ganga

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Banaras Hindu University


ncbi_country: Colombia

ncbi_isolation_source: Environment

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Antioquia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Institute of Medicinal Biotechnology


ncbi_organism_name: Roseibium sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter terrae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: University of verona


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Streptomyces xanthochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Palauibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;x__unclassified Candidatus Palauibacter;s__Candidatus Palauibacter sp.


ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Spirosoma lacussanchae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_organism_name: Seonamhaeicola sp. MEBiC01930

ncbi_submitter: Pukyong National University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Staphylococcus saprophyticus


ncbi_organism_name: uncultured Jannaschia sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Xanthomonas cerealis pv. cerealis

ncbi_strain_identifiers: CFBP 2541

ncbi_submitter: XTeam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas cerealis;x__Xanthomonas cerealis pv. cerealis

ncbi_type_material_designation: assembly from pathotype material


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Coprococcus phoceensis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada: Ottawa

ncbi_isolation_source: sewage from Environmental Centre Robert O. Picard

ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: Health Sciences North Research Institute


ncbi_country: Antarctica: Herring Island

ncbi_isolation_source: soil

ncbi_organism_name: Pseudarthrobacter sp. NBSH8

ncbi_submitter: University of New South Wales


ncbi_organism_name: Pseudomonas sp. SMSB3

ncbi_submitter: University of Florida


ncbi_organism_name: Pseudomonas leptonychotis

ncbi_submitter: University of Plymouth


ncbi_submitter: Center for Microbial Communities


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R43(2017)

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Suzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Suzhou Hospital of Traditional Chinese Medicine


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_country: Ecuador

ncbi_isolation_source: urine

ncbi_submitter: Universidad San Francisco de Quito


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Roseibium sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: anaerobic sludge [ENVO:00002129]

ncbi_organism_name: Desulforhabdus amnigena

ncbi_submitter: AIST


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: Huashan Hospital of Fudan University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Tongji University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Weihai

ncbi_isolation_source: offshore sediment

ncbi_organism_name: Alcanivorax sp. S6407

ncbi_submitter: Shandong University,Weihai


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Neisseria gonorrhoeae MS11

ncbi_submitter: Broad Institute


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: acrmp

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Escherichia coli H001


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: Rumen uncultured genome RUG13737

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Treponema denticola


ncbi_organism_name: Shigella sonnei

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Japan: Sagami Bay; off Hatsushima

ncbi_strain_identifiers: HA

ncbi_submitter: Japan Agency for Maine-Earth Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Vesicomyidisocius;s__Candidatus Vesicomyidisocius calyptogenae


ncbi_country: China: JiangSu

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_organism_name: Clostridium kluyveri NBRC 12016

ncbi_submitter: Research Institute of Innovative Technology for the Earth (RITE), Microbiology research group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium kluyveri;x__Clostridium kluyveri NBRC 12016


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: The University of Hong Kong


ncbi_country: Algeria

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: IRD


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_submitter: University of Verona, Italy


ncbi_organism_name: Candidatus Fermentibacter danicus

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__Candidatus Fermentibacter danicus


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Vreelandella glaciei

ncbi_submitter: EMG


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: TX; Houston

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University El Bosque


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chirstian Medical College


ncbi_country: Switzerland: Mt Terri URL; St-Ursanne

ncbi_isolation_source: Opalinus Clay rock porewater BRC-3 borehole

ncbi_organism_name: Desulfitibacter sp. BRH_c19

ncbi_submitter: EPFL


ncbi_country: USA: New York

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Algeria: El-Tarf

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium canariense

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_country: Uganda: Bwera General Hospital

ncbi_isolation_source: wound

ncbi_submitter: Makerere University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Nashville; TN

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Broad Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: feces of an Oriental stork (Ciconia boyciana)

ncbi_organism_name: Ornithinimicrobium ciconiae

ncbi_submitter: KyungHee University


ncbi_country: Chile: Region del Bio Bio; Bulnes

ncbi_isolation_source: milk

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: CERELA


ncbi_country: Germany

ncbi_isolation_source: Poultry Meat (Wings)

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The German Federal Institute of Risk Assessment (BfR)


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudomonadaceae bacterium UBA4526

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Saccharopolyspora sp. 5N708

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Cadiz


ncbi_organism_name: Alkalibacterium sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: shandong university


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Deferribacteres bacterium


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: Pseudomonas sp. KCJK8521

ncbi_submitter: University of Florida


ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: EPFL


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shantou University Medical College


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-1352

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Hungateiclostridiaceae bacterium KB18

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Laos

ncbi_isolation_source: stool

ncbi_submitter: IHU Mediteranee Infection


ncbi_organism_name: Euzebya pacifica

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces syringium

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Glaciecola sp.


ncbi_isolation_source: fish

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Hiroshima University


ncbi_country: USA: Raleigh; North Carolina

ncbi_organism_name: Limosilactobacillus albertensis

ncbi_submitter: University of Alberta


ncbi_country: Mexico: Tuxtla Gutierrez; Chiapas

ncbi_isolation_source: Soil

ncbi_organism_name: Acinetobacter lactucae

ncbi_submitter: Center for Genomic Sciences


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Humaya River; Agua Caliente

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Universidade Federal Fluminense


ncbi_country: USA: MidWest; broiler breeder farm 1

ncbi_isolation_source: Environmental bootie

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Poland

ncbi_submitter: Cross - sectoral framework for quality Assurance Resouces for countries in the European Union- CARE - National Veterinary Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Atlantibacter hermannii


ncbi_country: France: Nantes

ncbi_isolation_source: blood by aortic valve

ncbi_organism_name: Streptococcus gallolyticus subsp. gallolyticus

ncbi_submitter: Alliance de Recherche sur les Maladies Infectieuses Nantes-Angers (ARMINA)


ncbi_organism_name: Volucribacter psittacicida

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: Idaho

ncbi_isolation_source: potato tuber

ncbi_organism_name: Streptomyces caniscabiei

ncbi_submitter: USDA ARS


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptosporangium saharense

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Latescibacter sp.

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;g__Candidatus Latescibacter;x__unclassified Candidatus Latescibacter;s__Candidatus Latescibacter sp.


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares swab

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Poland: Bialowieza National Park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Bialystok


ncbi_organism_name: Streptomyces sp. NRRL F-5065

ncbi_strain_identifiers: NRRL F-5065

ncbi_submitter: University of Illinois


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hopital Bicetre


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Enterobacter cloacae


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LAU


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1374

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Sahlgrenska University Hospital


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_submitter: INSTITUTO NACIONAL DE SALUD


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Leptospira interrogans serovar Autumnalis

ncbi_strain_identifiers: USDA ATL-010

ncbi_submitter: USDA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: China: Peking

ncbi_isolation_source: tissue sample

ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: China Medical University


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG13807

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Romania: Bucharest

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_country: Malaysia: Selangor

ncbi_isolation_source: Water from farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Malaya


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Franche-comt

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Brigham Young University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Sichuan

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolate: metabat2_6730_HET_VAC_hybrid.107 MAG

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_strain_identifiers: metabat2_6730_HET_VAC_hybrid.107 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Microbacterium sp.


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Antarctica: Hatherton; Transantarctic Mountains

ncbi_organism_name: Arthrobacter sp. H5

ncbi_submitter: University of Auckland


ncbi_country: Armenia: Lake Sevan

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Polynucleobacter sp. AM-7D1

ncbi_submitter: University of Innsbruck


ncbi_country: Greece: Athens

ncbi_isolation_source: wound

ncbi_submitter: Karolinska Insitutet


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Syria

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_organism_name: Salmonella sp. 741265058_CST

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Qatar

ncbi_isolation_source: Retail Chicken Carcasse

ncbi_organism_name: Escherichia coli

ncbi_submitter: Qatar University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Norway

ncbi_isolation_source: Urine

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_assembly_name: freshwater MAG --- Ki3-D3_bin-0611

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Bacillus cereus group sp. MYBK31-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK31-2


ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Cornell University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_strain_identifiers: Os K e5

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_country: USA: Texas; Richmond

ncbi_isolation_source: nasal wash

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Elizabethkingia anophelis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Fischerella thermalis JSC-11


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Hardjo-bovis

ncbi_submitter: Massey University


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Belgium

ncbi_submitter: Sciensano


ncbi_country: Bangladesh

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Divison of Bacterial Diseases, Centers for Disease Control


ncbi_submitter: Agriculture & Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819;x__Campylobacter jejuni subsp. jejuni NCTC 11168-mfK12E5


ncbi_country: Bulgaria

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Dialister hominis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Chlamydia trachomatis E/Bour

ncbi_strain_identifiers: Bour;E

ncbi_submitter: Sanger Institute


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: United Kingdom

ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Pseudobutyrivibrio sp. UBA4308

ncbi_submitter: University of Queensland


ncbi_country: India: Assam

ncbi_isolation_source: vaginal discharge

ncbi_organism_name: Brucella abortus

ncbi_submitter: Madurai kamaraj university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: Gulf of Mexico

ncbi_isolation_source: sample BD02T18 sea water enriched with oil for 18 days

ncbi_organism_name: Colwellia sp. 39_35_sub15_T18

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_organism_name: Xanthomonas albilineans

ncbi_submitter: Guangxi university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universiteit Antwerpen


ncbi_country: Tunisia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_country: Japan

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: CA

ncbi_isolation_source: mushroom

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: MD

ncbi_isolation_source: ground turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. N18440


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_isolation_source: Tin of milk with fishy odor

ncbi_organism_name: Aeromonas hydrophila

ncbi_strain_identifiers: ATCC 7966

ncbi_submitter: Jinan university


ncbi_organism_name: Muribaculum intestinale


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S062_01370

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: University of Minnesota


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Liaocheng university


ncbi_country: USA: Florida

ncbi_organism_name: Pseudomonas capsici

ncbi_submitter: University of Georgia


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: India

ncbi_submitter: SC


ncbi_organism_name: Aeromonas veronii

ncbi_strain_identifiers: Aeromonas veronii X11

ncbi_submitter: the Colloge Of Fishers


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: India: Bikaner; Rajasthan

ncbi_isolation_source: Thar Desert soil

ncbi_organism_name: Streptomyces sp. JB150

ncbi_submitter: Maharaja Ganga Singh University


ncbi_country: Turkey: Ankara

ncbi_organism_name: Micromonospora sp. U21

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alcanivoracaceae bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: Colombia: Bogota

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Chryseotalea sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: jiangnan


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chifeng Center for Disease Control and Prevention


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: National Taiwan University


ncbi_organism_name: Paenibacillus lactis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Victivallaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Prevotella sp. SGI.167

ncbi_submitter: University of Manitoba


ncbi_organism_name: Sphingomonas sp. DC1200-1

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Gemmatimonas sp.


ncbi_organism_name: Shewanella ulleungensis

ncbi_submitter: Nofima


ncbi_organism_name: uncultured Ignavibacteriales bacterium


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: NIVIP


ncbi_country: Spain: Huelva; Cueva de la Mora

ncbi_isolation_source: Deep anoxic layer (35m depth) Cueva de la Mora

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: The Pennsylvania State University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Chloroflexi bacterium GWC2_49_37

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium GWC2_49_37


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 3 (4-7276001)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 3 (4-7276001)


ncbi_isolation_source: soil

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Northwest University


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacteroides cellulosilyticus


ncbi_organism_name: Algoriphagus aquatilis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: EMG


ncbi_organism_name: Agrobacterium tumefaciens WRT31

ncbi_submitter: Institut des Sciences du vegetal


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Dysgonomonas sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Kitasatospora purpeofusca

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium GW2011_GWA2_43_14


ncbi_country: India: KeerapakkamTamil Nadu

ncbi_isolation_source: Farm feed

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Malaya


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli O157:H7 str. EC4486

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. EC4486


ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit meat cut

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Hong Kong

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA:International Space Station; US Lab

ncbi_isolation_source: Surface

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Hawaii

ncbi_isolation_source: Goat rumen

ncbi_organism_name: Synergistes jonesii

ncbi_submitter: CSIRO


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Serratia grimesii

ncbi_submitter: University of Georgia


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: Tift Co.; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pseudomonas savastanoi

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: China: Jilin Province

ncbi_isolation_source: Northeast sauerkraut

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Beijing Technology and Business University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Enterocloster sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: Colombia

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. UA323


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Chlamydia trachomatis L1/440/LN

ncbi_submitter: Sanger Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Shewanella algae

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Streptomyces angustmyceticus

ncbi_submitter: Technical University of Denmark


ncbi_country: Viet Nam: Thai Binh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Bacillus sp. FSL L8-0152

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL L8-0152


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: missing: control sample

ncbi_submitter: Faculty of Applied Biological Sciences, Gifu University


ncbi_country: USA

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Iowa State University


ncbi_organism_name: Cyanobacteria bacterium P01_A01_bin.15

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_A01_bin.15


ncbi_organism_name: Olsenella sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-13326

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: EMG


ncbi_country: China: Henan

ncbi_isolation_source: water

ncbi_organism_name: Novosphingobium sp. HII-3

ncbi_submitter: Zhengzhou University of Light Industry


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium sp. BIOML-A1

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Department of Laboratory Medicine


ncbi_country: USA: Tatoosh Island; Washington

ncbi_isolation_source: kelp blade whole tissue extract

ncbi_organism_name: Hellea sp.

ncbi_submitter: University of Washington-Seattle


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Switzerland

ncbi_isolation_source: beef

ncbi_organism_name: Clostridium algidicarnis

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Gemmatimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Mycobacterium xenopi

ncbi_submitter: Mycobacteriology, National Institute of Infectious Diseases


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Acidovorax sp. NCPPB 3576

ncbi_strain_identifiers: NCPPB 3576

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_country: Brazil: Brasilia

ncbi_isolation_source: cell culture

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Embrapa Genetic Resources and Biotechnology


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Huzhou cdc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Queensland


ncbi_organism_name: Coraliomargaritaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Bartonella sp. AA126HLJHH

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Italy

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: Egypt

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudoalteromonas sp. SG44-17

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Liverpool School of Tropical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Blautia wexlerae


ncbi_submitter: University of Wyoming


ncbi_organism_name: Sphingopyxis alaskensis

ncbi_submitter: University of South Africa


ncbi_organism_name: Clostridium perfringens


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Huibei

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Clostridium sulfidigenes


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Cobetia marina

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Green Canyon; Gulf of Mexico

ncbi_isolation_source: 10 Gulf of Mexico water column samples before the DWH oil spill

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: National Oceanic & Atmospheric Administration


ncbi_country: South Korea: East Sea

ncbi_organism_name: Kistimonas asteriae

ncbi_strain_identifiers: KMD 001

ncbi_submitter: Quanzhou Normal University


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: uncultured bacterium


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Campylobacter devanensis

ncbi_submitter: University of Aberdeen


ncbi_country: United Kingdom

ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_country: Taiwan: Hsinchu

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Molecular and Cellular Biology


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Paraglaciecola sp.

ncbi_submitter: Linnaeus University


ncbi_country: China: Hangzhou

ncbi_isolation_source: anal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: France

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Imperial College London


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Wadsworth Center / NYSDOH


ncbi_country: USA: WI

ncbi_isolation_source: rattlesnake stomach

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: New York

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: NYU Grossman School of Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_organism_name: Acinetobacter idrijaensis

ncbi_submitter: Guangxi University


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Enterobacterales bacterium

ncbi_submitter: EMG


ncbi_country: Guadeloupe

ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: INRA


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Nonomuraea antimicrobica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Queensland


ncbi_assembly_name: Escherichia coli CVM N33687PS v. 1.0

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N33687PS

ncbi_submitter: FDA


ncbi_country: Singapore: Jurong West

ncbi_isolation_source: activated sludge

ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Crenotrichaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Brazil: Torres

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Federal University of Health Sciences of Porto Alegre


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella sp. NW280


ncbi_country: Russia: Kamchatka

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium lusitanum

ncbi_submitter: ARRIAM


ncbi_country: China: Shenzhen

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: BGI


ncbi_organism_name: Streptococcus parasuis

ncbi_submitter: The First People's Hospital Of Lianyungang


ncbi_country: China: Zhejiang

ncbi_isolation_source: kidney preservation fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital,College of Medicine,Zhejiang University


ncbi_organism_name: Pseudoduganella umbonata

ncbi_strain_identifiers: CECT 7753

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Escherichia coli

ncbi_submitter: Stanford Healthcare


ncbi_country: USA: NJ

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_organism_name: Robbsia sp. KACC 23696

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_organism_name: Anaerolineae bacterium CG2_30_58_95

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprobacillus cateniformis


ncbi_organism_name: uncultured Alcanivorax sp.


ncbi_country: Norway

ncbi_organism_name: Aeromonas salmonicida subsp. salmonicida

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Larissa


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Renji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Xanthomonas campestris pv. incanae

ncbi_submitter: The Ohio State University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_country: USA: Washington; Hood Canal

ncbi_isolation_source: sick oyster seed

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Oregon State University


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Yangjiang

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. L-S1409

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: France

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: SATT of Nantes university


ncbi_isolation_source: Hakubahimekawa hot spring water

ncbi_organism_name: Meiothermus hypogaeus NBRC 106114

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Jiangsu;Nanjing

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: China: Shenzhen

ncbi_organism_name: Blautia sp. AF19-34

ncbi_submitter: BGI


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Mycolicibacterium septicum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Honduras: Francisco Morazan; Tegucigalpa

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Candidatus Hydrothermales bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrothermota;c__Candidatus Hydrothermia;o__Candidatus Hydrothermales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Hydrothermota;c__Candidatus Hydrothermia;o__Candidatus Hydrothermales;x__unclassified Candidatus Hydrothermales;s__Candidatus Hydrothermales bacterium


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Zhejiang university


ncbi_organism_name: Hydrogenophilus thermoluteolus

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Paenactinomyces guangxiensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: EMG


ncbi_organism_name: Candidatus Methylopumilus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mariniflexile jejuense


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Istanbul University


ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phaeovulum sp.

ncbi_submitter: Delft University of Technology


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_isolate: AOP36_A1_surf _bin _39

ncbi_organism_name: Brevibacterium yomogidense

ncbi_strain_identifiers: AOP36_A1_surf _bin _39

ncbi_submitter: Genoscope


ncbi_assembly_name: freshwater MAG --- Loc090402-8m_bin-0938

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Blautia faecis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Caulobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: AAFC


ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: EMG