ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Pedobacter psychrotolerans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


gtdb_representative: t

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bartonella sp. AP57NXGY

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Kineococcus sp. SYSU DK026

ncbi_strain_identifiers: SYSU DK026

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: NA 13

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Candidatus Midichloria sp.

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Midichloria;x__unclassified Candidatus Midichloria;s__Candidatus Midichloria sp.


ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: Microbispora rosea


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


gtdb_type_species_of_genus: t

ncbi_assembly_level: Complete Genome

ncbi_country: Spain: Mallorca; Ses Salines

ncbi_isolation_source: sediment of evaporation pond

ncbi_organism_name: Limihaloglobus sulfuriphilus

ncbi_refseq_category: reference genome

ncbi_submitter: Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Deinococcus sp.


ncbi_country: Brazil: Fortaleza


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nonomuraea sp. bgisy094

ncbi_submitter: BGI Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Thermotogaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolate: CB1 bin27

ncbi_organism_name: Succinivibrio dextrinosolvens

ncbi_strain_identifiers: CB1 bin27


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: respiratory tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Micromonospora sp. NPDC048843

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: SPRUCE 597

ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_strain_identifiers: SPRUCE 597

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_assembly_name: BGX

ncbi_country: Turkey: Ankara

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Mycoplasmataceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Rhodocyclaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Indonesia

ncbi_isolation_source: fermented soybean food product

ncbi_organism_name: Bacillus subtilis subsp. natto

ncbi_submitter: Department of Biology, Faculty of Science and Technology, Universitas Pelita Harapan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. natto


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Paenibacillus sp. FSL W8-0194

ncbi_submitter: Penn State


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Halomicronema sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcaceae cyanobacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_level: Chromosome

ncbi_organism_name: Escherichia coli

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_submitter: Yangzhou University


ncbi_organism_name: Salegentibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: ocean university of China


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Hainan Province

ncbi_isolation_source: Sea water

ncbi_organism_name: Agarilytica rhodophyticola

ncbi_submitter: Shandong University at Weihai


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Deakin University


ncbi_country: Japan:Aomori; Nakatsugaru-gun; Nishimeya-mura; Kawaratai

ncbi_organism_name: Capsulimonas corticalis

ncbi_submitter: Faculty of Agriculture and Life Science, Hirosaki University


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halanaerobiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Neorhizobium sp. UBA4388

ncbi_submitter: University of Queensland


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_submitter: University of California, Davis, School of Veterinary Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Pasteurella;s__Pasteurella multocida;sb__Pasteurella multocida subsp. multocida;x__Pasteurella multocida subsp. multocida OH4807


ncbi_organism_name: Citromicrobium bathyomarinum

ncbi_submitter: Shenzhen University


ncbi_organism_name: Clostridium sp. AM30-24

ncbi_submitter: BGI


ncbi_country: South Africa: THABO MOFUTSANYANA; Free State Province

ncbi_isolation_source: Cows Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Actinokineospora fastidiosa

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Phycisphaerales bacterium UBA3158


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Sweden

ncbi_isolation_source: punctuat

ncbi_organism_name: Mycobacterium tuberculosis BTB12-162

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: mastitis

ncbi_submitter: KOlimastIR


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: Lachnospiraceae bacterium UBA1818

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: McMaster University


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Halomonas sp. AOP43-F2-13

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Streptomyces sp. NPDC048156

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Arcobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus cereus group sp. BceL165

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL165


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Geobacillus thermodenitrificans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Sulfurovaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Syntrophomonas wolfei

ncbi_submitter: University of Queensland


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Alaska

ncbi_submitter: Oita University


ncbi_assembly_name: Rumen uncultured genome RUG10686

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chlamydia trachomatis G/9301

ncbi_submitter: Oregon State University


ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Planctomycetaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Mississippi State University


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Ureaplasma sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: China: Jilin

ncbi_organism_name: Gilliamella sp. B14384H2

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: FL; Biscayne National Park

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pseudoalteromonas sp. DL2-H6

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: USA: Truro; MA

ncbi_isolation_source: soil from cranberry bog

ncbi_organism_name: Pseudomonas batumici

ncbi_submitter: Midwestern University


ncbi_country: USA: Geneva; New York

ncbi_organism_name: Buchnera aphidicola (Myzus persicae)

ncbi_submitter: IAGC


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Roseburia sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Bacillus cereus ATCC 14579

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus ATCC 14579


ncbi_organism_name: Citroniella saccharovorans

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_organism_name: Rhodococcus sp. NPDC077669

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. NPDC077669


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Texas A&M Center for Phage Technology


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDX8P113P-2

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 8

ncbi_organism_name: Candidatus Yonathbacteria bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yonathiibacteriota;x__unclassified Candidatus Yonathbacteria;s__Candidatus Yonathbacteria bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: surface seawater

ncbi_organism_name: Pseudoalteromonas spongiae

ncbi_submitter: Shandong University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: EMG


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_country: Iran: Khaygen River

ncbi_isolation_source: sediments of water samples collected from a contaminated (highly Industrialised) site in the Khaygen River

ncbi_organism_name: Bacillus sp. F2HM

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. F2HM


ncbi_isolation_source: Hydrothermal vent sediment

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_country: Taiwan

ncbi_isolation_source: root nodule

ncbi_organism_name: Paraburkholderia caribensis

ncbi_submitter: The James Hutton Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Utah


ncbi_assembly_name: Rumen uncultured genome RUG12702

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shanxi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: University of Florida


ncbi_country: USA: New York

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Chicago


ncbi_country: India: Telangana; Patancheru

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: groundwater

ncbi_organism_name: Geobacter sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce

ncbi_organism_name: Proteus vulgaris

ncbi_submitter: University of Wyoming


ncbi_country: China: Innermogolia

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Barnesiella intestinihominis


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0030

ncbi_submitter: Broad Institute


ncbi_country: USA: Tulsa

ncbi_isolation_source: pork

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Tulsa


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Porto


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Sichuan University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC056437

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: China Jiliang University


ncbi_organism_name: Corynebacterium casei

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pandoraea sputorum

ncbi_submitter: Hubei Provincial Center for Disease Control and Prevention


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Brazil: Braganca

ncbi_submitter: LNCC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Collinsella intestinalis DSM 13280

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Oregon State University


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pectobacterium cacticida

ncbi_submitter: University of Gdansk


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Flavobacteriales bacterium


ncbi_isolation_source: throat swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: Italy: Milan

ncbi_isolation_source: Forehead healthy skin

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: IRCCS Ospedale Galeazzi - Sant'Ambrogio


ncbi_country: USA: Minnesota

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Minnesota


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: China: Suzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG12004

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: United Kingdom

ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Liverpool


ncbi_organism_name: Vibrio penaeicida

ncbi_submitter: Laboratory of Genome Science Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: L

ncbi_isolate: L

ncbi_strain_identifiers: L

ncbi_submitter: DTU


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_isolation_source: root nodule

ncbi_organism_name: Frankia tisae

ncbi_submitter: Leibniz Institute DSMZ German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany


ncbi_country: USA: New York City

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Columbia University Mailman School of Public Health


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Duke University


ncbi_isolation_source: Urine

ncbi_organism_name: Ureaplasma parvum

ncbi_strain_identifiers: hebnu uu3

ncbi_submitter: HeBei North University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_country: Australia: South Australia

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: University of Queensland


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 408

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SNUC 2754

ncbi_submitter: University of Calgary


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Rothia sp. HMSC064D08

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC064D08


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_organism_name: Alicycliphilus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M45704

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of California at Davis


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Aliivibrio logei

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Ibadan, Nigeria


ncbi_isolation_source: Faeces


ncbi_isolation_source: rat gut

ncbi_organism_name: Ruminococcus sp. UBA7226


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Massilimicrobiota timonensis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Iran

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_strain_identifiers: CFBP 7423

ncbi_submitter: IRHS


ncbi_country: USA: Memphis; Nebraska

ncbi_organism_name: Agrobacterium larrymoorei

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Occiput swab

ncbi_organism_name: Rothia kristinae

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Australia: Melbourne

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_organism_name: Gammaproteobacteria bacterium AS21

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_country: USA: MO

ncbi_isolation_source: organ

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_isolation_source: Maize senescent root system

ncbi_organism_name: Paraburkholderia graminis C4D1M

ncbi_submitter: GHENT UNIVERSITY


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_organism_name: Staphylococcus hominis


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome RUG12173

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Military Veterinary Science


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: College de France


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: University of Stirling


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Vibrio natriegens

ncbi_submitter: Biotechnology Institute


ncbi_organism_name: Bacillus cytotoxicus

ncbi_strain_identifiers: CVUAS 6082

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Rhizobium rosettiformans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Candidatus Spongiihabitans sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Arenicellales;f__Candidatus Poriferihabitaceae;g__Candidatus Spongiihabitans;x__unclassified Candidatus Spongiihabitans;s__Candidatus Spongiihabitans sp.


ncbi_organism_name: Schlesneria sp.

ncbi_submitter: EPFL


ncbi_organism_name: Alistipes onderdonkii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sarcina sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: California; Modesto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bologna


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Fusobacterium canifelinum

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: environmental

ncbi_organism_name: Brucella canis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_country: USA: PA

ncbi_isolation_source: avian liver (Gallus gallus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China

ncbi_organism_name: Bacillus cereus

ncbi_submitter: China Agricultural University


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Antarctica: James Ross Island; Marsovske Valley

ncbi_isolation_source: small stones

ncbi_organism_name: Hymenobacter lapidarius

ncbi_submitter: Masaryk University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Uruguay: Flores

ncbi_isolation_source: lymph nodes

ncbi_submitter: Institut Pasteur de Montevideo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Marivita cryptomonadis

ncbi_submitter: Shantou University


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces sp. MMS24-I31

ncbi_submitter: Chungnam National University


ncbi_country: Brazil

ncbi_isolation_source: Tissue Fragment

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Aerococcus mictus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Methylotenera sp.


ncbi_organism_name: Chlamydia trachomatis E/SotonE4

ncbi_submitter: Sanger Institute


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Malaysia

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: China: Nanchang

ncbi_isolation_source: food

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_assembly_name: GS De Novo Assembly

ncbi_country: India: Gujarat; Kuchch

ncbi_isolation_source: saline desert plant rhizosphere

ncbi_organism_name: Bacillus amyloliquefaciens EGD-AQ14

ncbi_submitter: National Environmental Engineering Research Institute-CSIR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens;x__Bacillus amyloliquefaciens EGD-AQ14


ncbi_strain_identifiers: UCI 53

ncbi_submitter: USDA-ARS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: WuHan

ncbi_isolation_source: wholesale market

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacillales bacterium UBA733

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__unclassified Bacillales;s__Bacillales bacterium UBA733


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Azospirillum sp.


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: camelid milk; raw milk 24h old

ncbi_submitter: ETH Zurich


ncbi_organism_name: Rothia mucilaginosa


ncbi_isolation_source: blood and spinal fluid

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Chiba University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Shangdong

ncbi_isolation_source: egg

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Prevotella pallens


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: unialgal culture in lake water

ncbi_organism_name: Geminocystis herdmanii PCC 6308

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Blautia wexlerae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Denitratisoma sp.

ncbi_submitter: University of Toronto


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: Enterocloster clostridioformis


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: biofilm

ncbi_organism_name: Sulfurovum riftiae

ncbi_submitter: Rutgers University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_organism_name: Streptomyces phaeochromogenes

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Gastric tissue

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_organism_name: Thermoanaerobacter kivui

ncbi_submitter: Graz University of Technology


ncbi_country: USA: Boston

ncbi_isolation_source: URINE

ncbi_organism_name: Escherichia coli BIDMC 70

ncbi_strain_identifiers: BIDMC 70

ncbi_submitter: Broad Institute


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Anaerococcus rubeinfantis


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: China: Shenzhen; Guangdong

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium lablabi

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: soil surrounding root

ncbi_organism_name: Novosphingobium kaempferiae

ncbi_submitter: Faculty of Science, Chulalongkorn University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Pseudoalteromonas arctica

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: Alistipes finegoldii


ncbi_country: China: Henan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_country: Germany

ncbi_isolation_source: water

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: TZW: DVGW-Technologiezentrum Wasser


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Marinosulfonomonas sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Aeribacillus sp. FSL W8-0870

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Aeribacillus;x__unclassified Aeribacillus;s__Aeribacillus sp. FSL W8-0870


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Flavobacterium covae

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Fusicatenibacter sp.


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Microbacterium plantarum

ncbi_submitter: Universidad Politecnica del Estado de Morelos


ncbi_organism_name: Streptomyces anthocyanicus


ncbi_organism_name: Anaeromyxobacter sp. Red801

ncbi_submitter: Shandong University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_organism_name: uncultured Bradyrhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Inha University


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D7_bin-875

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Streptomyces sp. NPDC052043


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Eubacterium maltosivorans

ncbi_submitter: Georg-August-University Goettingen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Yunnan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: USA: Seattle

ncbi_isolation_source: human oral cavity

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: University of Washington


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apis

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium leguminosarum;x__Rhizobium leguminosarum bv. viciae;x__Rhizobium leguminosarum bv. viciae WSM1455


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Infection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Spain

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Murdoch University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Tannerella sp. CAG:51

ncbi_submitter: DTU


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pseudomonas sp. UBA2047

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: rice rhizosphere

ncbi_organism_name: Methylomonas rhizoryzae

ncbi_submitter: nanjing agricutural university


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_country: Spain: Mediterranean; Malvarrosa Beach; Valencia

ncbi_isolation_source: seawater

ncbi_organism_name: Actibacterium mucosum KCTC 23349

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_submitter: EMG


ncbi_country: Ethiopia

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: cloaca from white stork nestling

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of La Rioja


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Azonexus sp.

ncbi_submitter: NanJing University


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Tabrizicola oligotrophica

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_isolation_source: zooplankton aquaculture

ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Thailand

ncbi_isolation_source: the shrimp farm in eastern Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_isolation_source: metagenome

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: University of Queensland


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: Chile: Chillan

ncbi_isolation_source: milk

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: CERELA


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Xanthomonas citri pv. aurantifolii

ncbi_strain_identifiers: FDC 535

ncbi_submitter: UNESP-FCAV

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. aurantifolii


ncbi_organism_name: Gluconobacter cerinus NRIC 0229

ncbi_strain_identifiers: NRIC 0229

ncbi_submitter: Tokyo University of Agriculture


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Collinsella bouchesdurhonensis

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Shenzhen

ncbi_organism_name: Qipengyuania gaetbuli

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0702

ncbi_submitter: Texas A&M University


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevibacterium sp. UBA2624


ncbi_organism_name: Prevotella conceptionensis

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Yokohama City University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Brazil: Parana

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira borgpetersenii serovar Hardjo-bovis

ncbi_submitter: Londrina State University


ncbi_isolation_source: culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Indian Institute of Science


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy

ncbi_organism_name: Agromyces italicus DSM 16388

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Neisseria mucosa

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: pig gut metagenome


ncbi_organism_name: Pirellula sp.

ncbi_submitter: EPFL


ncbi_country: China

ncbi_isolation_source: anaerobic digsetion effluent

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Rumen uncultured genome RUG10459

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Germany

ncbi_isolation_source: wheat sourdough

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Technical University of Munich


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sphingomonas sanguinis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 344

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the seqafrica consortium


ncbi_country: Thailand


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Canadian Research Institute for Food Safety

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Tarim University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chifeng Center for Disease Control and Prevention


ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: uncultured Coxiellaceae bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Priestia megaterium

ncbi_submitter: BGI


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: Canal

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_country: Brazil

ncbi_isolation_source: chicken piece (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: Haiti: St. Marc Hospital; Artibonite

ncbi_isolation_source: Stool; Clinical

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Pondicherry University


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium UBA1364


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: IMG-taxon 2639762651 annotated assembly

ncbi_organism_name: Pseudomonas grimontii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Kansas

ncbi_organism_name: Clavibacter michiganensis subsp. insidiosus

ncbi_submitter: University of Minnesota, Twin Cities


ncbi_country: USA:Alaska; Seward Peninsula

ncbi_isolation_source: root nodule

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Next generation Ecosystem Experiment Arctic


ncbi_country: Russia: Samara Region

ncbi_isolation_source: turkey

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: MIT Cambridge; MA

ncbi_organism_name: Campylobacter sp. MIT 97-5078

ncbi_submitter: MIT


ncbi_organism_name: Streptomyces pharetrae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Spain: Bilbao

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Clostridioides difficile CD160

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus S72396

ncbi_submitter: Broad Institute


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Intraperitoneal

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_country: USA: Alabama

ncbi_submitter: university of minnesota

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Legionella tunisiensis

ncbi_strain_identifiers: LegM

ncbi_submitter: ebi


ncbi_organism_name: uncultured Candidatus Thioglobus sp.

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__environmental samples;s__uncultured Candidatus Thioglobus sp.


ncbi_assembly_name: IMG-taxon 2617270924 annotated assembly

ncbi_organism_name: Kordiimonas lacus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Pacificimonas sp.

ncbi_submitter: Pau University


ncbi_isolate: AOP21_A1_surf _bin _3

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: AOP21_A1_surf _bin _3

ncbi_submitter: Genoscope


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: Umatilla County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1E3

ncbi_submitter: Oregon State University


ncbi_country: China

ncbi_organism_name: Mumia sp. ZJ1417

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas edaphica

ncbi_submitter: Wageningen University & Research


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Guangxi

ncbi_isolation_source: water

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD19964

ncbi_submitter: Broad Institute


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Xiamen

ncbi_isolation_source: Terrene pig farm

ncbi_organism_name: Exiguobacterium sp. s150

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s150


ncbi_organism_name: Mesorhizobium sp. M0587

ncbi_submitter: Washington State University


ncbi_country: China: Shandong

ncbi_isolation_source: diseased goat

ncbi_organism_name: Brucella melitensis bv. 3

ncbi_submitter: National Institute for Communicable Disease Control & Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Desulfovibrio gallistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Hungary: Bugyi

ncbi_isolation_source: enrichment culture AER1 inoculated with biofilm which develop in hydrocarbon contaminated groundwater; aerobic enrichment culture amended with 20 ppm diesel fuel/ crude oil mixture (3:2; v/v) as carbon and energy sources

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Szent Istvan University


ncbi_country: Canada: St. Johns

ncbi_isolation_source: Blood

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 3a;x__Listeria monocytogenes serotype 3a str. 88-1059


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_isolation_source: feces

ncbi_organism_name: Dubosiella newyorkensis


ncbi_isolation_source: Colon


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Kingella denitrificans

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil

ncbi_isolation_source: sugarcane bagasse

ncbi_organism_name: Chitinophaga sp. CB10

ncbi_submitter: Univ Estadual Paulista UNESP/FCAV


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Alistipes communis


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from upstream of wastewater treatment plant

ncbi_organism_name: Citrobacter sp. RHBSTW-00599

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_isolate: metabat2_XCR1_HOM_7857_bwa.108 MAG

ncbi_organism_name: Clostridia bacterium

ncbi_strain_identifiers: metabat2_XCR1_HOM_7857_bwa.108 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Geodermatophilaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Salmonella sp. CQ24WZ0417SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas sp. B392_1p

ncbi_submitter: Universidad de la Republica


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Roseinatronobacter sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Verrucomicrobiales bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Tanzania: Serengeti National Park

ncbi_isolation_source: skin

ncbi_organism_name: Treponema pallidum subsp. pertenue

ncbi_submitter: Masaryk University


ncbi_country: Burkina Faso: Toulfe

ncbi_isolation_source: Maari

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: IMG-taxon 2687453791 annotated assembly

ncbi_organism_name: Pseudomonas sp. PDC86

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Reunion: Saint-Denis

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CHU de Rennes


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Tunisia

ncbi_isolation_source: seafood

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_isolate: Urine

ncbi_submitter: UMR 1137 IAME


ncbi_country: China: Yunnan

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D8_bin-065

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus casseliflavus


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of South Africa


ncbi_country: India: Lonar

ncbi_isolation_source: lake sediment

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: MGU, Nalgonda


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Alistipes indistinctus YIT 12060

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes indistinctus;x__Alistipes indistinctus YIT 12060


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: Subgingival plaque; from a 9mm deep periodontal pocket

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Melbourne Dental School, University of Melbourne


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus parahaemolyticus

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_country: USA: Missouri

ncbi_isolation_source: mammary gland

ncbi_organism_name: Staphylococcus simulans UMC-CNS-990

ncbi_submitter: University of Missouri - Columbia


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Russia: Uzon Caldera; Kamchatka; Arkashin hot spring

ncbi_isolation_source: hot spring

ncbi_organism_name: Mesoaciditoga sp.

ncbi_submitter: Laetitia Wilkins's shared submissions


ncbi_isolation_source: lake water

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Geodermatophilaceae bacterium URHA0031

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany

ncbi_organism_name: Chlamydia psittaci 09DC78

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Faecalibaculum sp.


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_organism_name: Porphyromonas pasteri

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Poland: Bialystok

ncbi_isolation_source: urine

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Medical University of Bialystok


ncbi_isolation_source: enrichment culture from tropical Atlantic Ocean

ncbi_organism_name: Trichodesmium erythraeum 21-75

ncbi_submitter: University of Southern California


ncbi_country: India: Haryana; Kaul

ncbi_isolation_source: rice leaf

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: ICAR-National Research Centre on Plant Biotechnology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprococcus sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii


ncbi_country: France

ncbi_isolation_source: feces

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. B182


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep ocean sediments

ncbi_organism_name: Flagellimonas profundi

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources of China


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter sp. BRD128

ncbi_submitter: Korea Atomic Energy Research Institute


ncbi_country: USA

ncbi_isolation_source: tracheal aspirate

ncbi_submitter: NISC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii;x__Enterobacter hormaechei subsp. hoffmannii ECNIH3


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: wound r groin

ncbi_organism_name: Corynebacterium sp. HMSC076D02

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: India: Rameswaram

ncbi_organism_name: Verrucomicrobiota bacterium JB024

ncbi_submitter: JNTUH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobiota bacterium JB024


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: urine sample

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: CHU de Bicetre


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: EBI


ncbi_country: Slovenia

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Harvard T.H. Chan School of Public Health


ncbi_country: United Kingdom

ncbi_organism_name: Blautia obeum

ncbi_submitter: SC


ncbi_submitter: ETH Zurich


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Czech Republic

ncbi_isolation_source: intestinal contents of pig

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Veterinary Research Institute


ncbi_country: China

ncbi_organism_name: Metabacillus halosaccharovorans

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Antarctica: Wilkes tip

ncbi_organism_name: Quadrisphaera sp. INWT6

ncbi_submitter: University of New South Wales


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Marinifilaceae bacterium

ncbi_submitter: ProBone