ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_isolation_source: sterile body site

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Candidatus Avelusimicrobium alvi

ncbi_submitter: EMG


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P5 CL A 28

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: Turkey

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Republic of Turkey, Ministry of Health Directorate General Public Health


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_assembly_level: Scaffold

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: R&D Center, Seoul Dairy Cooperative


ncbi_country: Canada: Lacombe

ncbi_organism_name: Treponema porcinum

ncbi_submitter: AAFC


ncbi_organism_name: Rhodococcus sp. IITD102

ncbi_submitter: Indian Institute of Technology Delhi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. IITD102


ncbi_organism_name: Halomonas sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Chulalongkorn University


ncbi_assembly_name: Salmonella enterica CVM N51307 v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Ground Beef

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


gtdb_representative: t

ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Colwellbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;x__unclassified Candidatus Colwellbacteria;s__Candidatus Colwellbacteria bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France: Taillades

ncbi_isolation_source: irrigation canal

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Sorbonne University


ncbi_country: USA

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: China

ncbi_isolation_source: river water

ncbi_organism_name: Citrobacter sp. R3

ncbi_submitter: Shandong University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of California Berkeley


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Instituto de Quimica


ncbi_isolation_source: groin

ncbi_submitter: NISC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae KPNIH27


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Ago Bay; Honshu

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Hawaii-Manoa


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Alistipes inops

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Allomuricauda sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Roseburia sp. CAG:303

ncbi_submitter: DTU


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: TU Wien


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Antarctica: Ardley Cove; Maxwell Bay; Fildes Peninsula

ncbi_isolation_source: ocular surface sample

ncbi_organism_name: Pasteurellaceae bacterium TAE3-ERU1

ncbi_submitter: Erciyes University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: India

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington State University


ncbi_country: South Korea: Jeonju

ncbi_isolation_source: Blood

ncbi_organism_name: Bacillus glycinifermentans

ncbi_submitter: Korea Centers for Disease Control and Prevention


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Kordiimonadaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: India: New Delhi

ncbi_isolation_source: NP swab

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Christian Medical College


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas denitrificans (nom. rej.)

ncbi_submitter: University of Washington


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Mycoplasmopsis anatis

ncbi_submitter: WENS Foodstuff Group Co., Ltd. Rsearch Institute


ncbi_organism_name: uncultured Vampirovibrio sp.


ncbi_organism_name: uncultured Candidatus Coproplasma sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Coproplasma;x__environmental samples;s__uncultured Candidatus Coproplasma sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Salmonella sp. NW1000

ncbi_submitter: Sichuan University


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Eubacterium faecipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: The University of Texas Health Science C


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: freshwater MAG --- UppL7s_bin-0873

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: archaeon

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: Russia

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: United Kingdom

ncbi_isolation_source: beef

ncbi_organism_name: Kaistella carnis

ncbi_refseq_category: reference genome

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Rudaea sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Beside Boulder

ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: University of Duisburg-Essen


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA: OR

ncbi_isolation_source: environment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: USA:Texas; Kleberg County; Los Olmos Creek

ncbi_isolation_source: hypersaline river water

ncbi_organism_name: Salinivibrio sp. VYel1

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: EBI


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Surface of a polyethylene microplastic particle present in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Labrenzia sp. THAF35

ncbi_submitter: Uni Bielefeld


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Austria

ncbi_isolation_source: wound

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: AGES


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_country: China: Wuhan

ncbi_isolation_source: lavage fluid

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Acutalibacter muris


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_country: USA

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Avibacteroides faecavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;x__Bacteroidaceae incertae sedis;g__Candidatus Avibacteroides;s__Candidatus Avibacteroides faecavium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Small intestine

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp H-24c

ncbi_strain_identifiers: Hp H-24c

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Portugal

ncbi_isolation_source: wild boar spleen

ncbi_organism_name: Brucella suis bv. 2

ncbi_submitter: National Institute for Agrarian and Veterinary Research, P.I. & BioFIG - Center for Biodiversity Functional & Integrative Genomics Faculty of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella suis;x__Brucella suis bv. 2


ncbi_country: United Kingdom

ncbi_isolation_source: foam on the surface of aeration tanks in an activated-sludge sewage-treatment plant

ncbi_organism_name: Tsukamurella spumae

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_isolation_source: CSF


ncbi_isolate: PCKMO

ncbi_isolation_source: nasopharynx


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Myroides odoratus CIP 103059

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Myroides;s__Myroides odoratus;x__Myroides odoratus CIP 103059


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_strain_identifiers: acrna

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Paenibacillus macerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Spain

ncbi_isolation_source: pork industry

ncbi_submitter: ISCIII


ncbi_organism_name: Planococcus kocurii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Otago


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. indica;x__Salmonella enterica subsp. indica serovar 6,14,25:z10:1,(2),7;x__Salmonella enterica subsp. indica serovar 6,14,25:z10:1,(2),7 str. 1121


ncbi_organism_name: Leclercia adecarboxylata


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: USA: National Naval Medical Center; Bethesda; MD

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii Naval-83

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Liaocheng university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Desulfatibia sp.

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Desulfobacteria;o__Desulfobacterales;x__Desulfobacterales incertae sedis;g__Candidatus Desulfatibia;x__unclassified Candidatus Desulfatibia;s__Candidatus Desulfatibia sp.


ncbi_country: Malaysia: Alor Setar

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_assembly_name: LM06-00918 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Cuba: San Nicolas

ncbi_isolation_source: Cloacal sample

ncbi_submitter: University of Bern


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Pauljensenia sp.

ncbi_submitter: University of California, Davis


ncbi_isolation_source: rat gut

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Israel

ncbi_isolation_source: animal

ncbi_submitter: Sheba medical center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Sweden

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M University - Corpus Christi


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Citrobacter sp. BNK-40

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Austria: Wels

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Methylobacterium sp. Leaf92

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: University of Parma


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidimicrobiia bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Houston Methodist


ncbi_organism_name: Bariatricus sp. HCP28S3_E4

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: bglFP 6753

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Rhizobium sp. YTU87027

ncbi_submitter: Yantai University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Ottawa


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: South Carolina

ncbi_organism_name: Enterococcus sp. JM9B

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: Morocco: Lake Takerkoust

ncbi_organism_name: Microcystis sp. LEGE 00066

ncbi_submitter: CIIMAR


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Segetibacter sp.

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_isolation_source: nasopharynx


ncbi_isolate: Psychrobacter pulmonis S-606

ncbi_isolation_source: lamb lungs

ncbi_organism_name: Psychrobacter pulmonis

ncbi_strain_identifiers: Psychrobacter pulmonis S-606

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Germany

ncbi_organism_name: Thermocrispum agreste DSM 44070

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides clarus

ncbi_submitter: EMG


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Poland

ncbi_organism_name: Escherichia coli

ncbi_submitter: Biobank Lab, Department of Molecular Biophysics, Faculty of Biology and Environmental Protection, Univeristy of Lodz, Poland


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Alistipes communis


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Recife

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_country: Canada: Regina

ncbi_isolation_source: left hand

ncbi_organism_name: Eikenella corrodens

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_country: Kenya: Lake Magadi

ncbi_isolation_source: dry sediment

ncbi_organism_name: Alkalihalobacillus sp. LMS39

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: Serbia: Besenovo

ncbi_organism_name: Xanthomonas arboricola pv. pruni

ncbi_submitter: University of Exeter


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Wound Secretion

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: China: Shanghai

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Ocean University


ncbi_country: Germany: Regensburg

ncbi_isolation_source: wound swab [SNOMED:258531008]

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_organism_name: Vibrio neptunius

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Acetobacter sp.

ncbi_submitter: EMG


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: Max Planck Institute for Evolutionary Biology


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus durans

ncbi_submitter: SC


ncbi_organism_name: Bacteroides uniformis dnLKV2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Massilioclostridium coli

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: USA: Northern Indiana

ncbi_isolation_source: Surface-sterilized seed

ncbi_organism_name: Bacillus safensis

ncbi_submitter: University of Notre Dame


ncbi_isolation_source: soil

ncbi_organism_name: Brachybacterium phenoliresistens

ncbi_submitter: Tianjin University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Israel

ncbi_isolation_source: mastitis

ncbi_submitter: Heriot-Watt University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Paenibacillus macquariensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Korea Disease Control and Prevention Agency


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Bulgaria

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_country: China: Lhasa; Tibet

ncbi_isolation_source: Fermented yak milk

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: uncultured Cytophagia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;x__environmental samples;s__uncultured Cytophagia bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: China: Hangzhou

ncbi_isolation_source: wastewater

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: human skin

ncbi_organism_name: Pseudomonas nitroreducens

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Alistipes sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: China: East China Sea

ncbi_isolation_source: water

ncbi_organism_name: Algoriphagus litoralis

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Taiwan

ncbi_isolation_source: stool

ncbi_submitter: Centers for Disease Control, Taiwan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Oman

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Sultan Qaboos University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: San Diego

ncbi_submitter: UC San Diego


ncbi_organism_name: Salmonella enterica

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Henriciella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Hyphomonadaceae bacterium


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Hansschlegelia beijingensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Acidobacteriaceae bacterium KBS 89

ncbi_strain_identifiers: KBS 89


ncbi_country: China: Tengchong county; Yunnan; BF3

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Canada: Burnaby Mountain

ncbi_isolation_source: Apodemus sylvaticus Tissue Culture

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_assembly_name: N

ncbi_isolate: N

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: N

ncbi_submitter: DTU


ncbi_organism_name: Aestuariivirga sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia sp. AP1243

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-0733

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_assembly_name: freshwater MAG --- Loc080925-5-5m_bin-0971

ncbi_organism_name: uncultured Methylococcaceae bacterium


ncbi_country: USA: Washington;Seattle

ncbi_isolation_source: Unknown Specimen Type

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Leeuwenhoekiella sp.


ncbi_country: Thailand

ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Costa Rica

ncbi_organism_name: Leptospira santarosai

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_isolation_source: Deep sea water

ncbi_organism_name: Micromonospora sp. AKA38

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R629;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;x__unclassified Candidatus Polarisedimenticolia;s__Candidatus Polarisedimenticolia bacterium


ncbi_organism_name: Bacillus atrophaeus

ncbi_strain_identifiers: SW

ncbi_submitter: Northwest A&F University


ncbi_country: USA: Kalamazoo County; MI

ncbi_isolation_source: Gull Lake

ncbi_organism_name: Microcystis aeruginosa G11-06

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hangzhou Medical University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter sp. WCHEn045836

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_isolation_source: patient

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universite Paris Sud


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Detroit; MI

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: [Eubacterium] sulci

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_strain_identifiers: ISU 917

ncbi_submitter: USDA-ARS


ncbi_organism_name: Haliscomenobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Tuna Sandwich

ncbi_submitter: Agroscope


ncbi_country: USA: Memphis

ncbi_organism_name: Streptococcus sp. B01

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: Ireland

ncbi_submitter: SC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Atlantic Ocean

ncbi_isolation_source: sediment from marine environment

ncbi_organism_name: Microbacterium atlanticum

ncbi_submitter: Xiamen University


ncbi_organism_name: Arcanobacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Cellvibrionales bacterium


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Aricultural University


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Sake(Hatsuzoe)

ncbi_organism_name: Kocuria sp. TGY1120_3

ncbi_submitter: Toyama Prefectural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Schneewindia gallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Schneewindia;s__Candidatus Schneewindia gallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Schneewindia;s__Candidatus Schneewindia gallinarum


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Rochester; Minnesota

ncbi_isolation_source: Associated Infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Mayo Clinic


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_isolation_source: wild boar feces

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Dietzia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Hopital Bicetre


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Dechloromonas sp.

ncbi_submitter: University of Waterloo


ncbi_country: South Korea: namhae

ncbi_organism_name: Paraglaciecola mesophila

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: INRAE


ncbi_isolation_source: blood

ncbi_organism_name: Afipia sp. OHSU_I-C6

ncbi_submitter: FDA


ncbi_isolation_source: faeces

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_organism_name: Mesocricetibacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0162R

ncbi_submitter: Broad Institute


ncbi_assembly_name: acinetobacter baumannii isolate  strainI

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: I

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_isolation_source: endosphere

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: NIOO KNAW


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Kangiellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Kangiella japonica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Brazil

ncbi_isolation_source: liver abcess in cystic fibrosis patient

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: UNIVERSIDADE DO ESTADO DO RIO DE JANEIRO


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_assembly_name: freshwater MAG --- Umea1p2_bin-0905

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Brazil: Campinas

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Veterinary Research Institute


ncbi_country: Algeria: Tlemcen

ncbi_isolation_source: rhizospheric soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: LP2VM, Departement of Biotechnology,University of Sciences and Technology of Oran Mohamed Boudiaf


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Pseudomonas paracarnis

ncbi_submitter: Vanderbilt University Medical Center


ncbi_organism_name: uncultured Sangeribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Beijerinckiaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Cellulomonas iranensis

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Candidatus Competibacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;x__unclassified Candidatus Competibacter;s__Candidatus Competibacter sp.


ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: the north of the South China Sea

ncbi_isolation_source: marine sediment

ncbi_submitter: Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__candidate division TA06;s__candidate division TA06 bacterium B3_TA06


ncbi_isolation_source: human gut

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Surat Basin; Queensland

ncbi_isolation_source: Filtered formation waters collected from the Coxon Creek 10 (CX-10) coalbed methane well

ncbi_organism_name: Actinobacteria bacterium UBA7524

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium UBA7524


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_assembly_name: Rumen uncultured genome RUG10496

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Monash University


ncbi_assembly_name: freshwater MAG --- Loc090721-8m_bin-929

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Photobacterium piscicola

ncbi_submitter: University Of Tasmania, Tasmania Inst Agriculture


ncbi_assembly_name: freshwater MAG --- I3-5_bin-402

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Osaka

ncbi_isolation_source: Bathroom

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Kobe Institute of Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Barnesiella sp. An22

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Yibin; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AM50-15BH

ncbi_submitter: BGI


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: The University of Hong Kong


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: Chile: Santiago

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_country: USA: Colorado

ncbi_organism_name: Pandoraea pnomenusa

ncbi_submitter: Colorado State University


ncbi_country: Argentina: Santa Fe

ncbi_isolation_source: sputum from pediatric cystic fibrosis patient

ncbi_organism_name: Inquilinus limosus MP06

ncbi_submitter: Pino M, Di Conza J, Gutkind G - Catedra de Microbiologia -Facultad de Farmacia y Bioquimica - Universidad de Buenos Aires (FFyB-UBA)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Terrisporobacter othiniensis

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_country: USA:TX; College Station

ncbi_isolation_source: surface-sterilized wheat seeds

ncbi_organism_name: Pseudomonas putida S610

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Fargo; North Dakota

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Weizmannia sp. CD-2023

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_assembly_name: BCH

ncbi_organism_name: Brucella sp. 191011898

ncbi_submitter: JLU


ncbi_assembly_name: De novo assembly of KCRI isolate RDK36_33

ncbi_isolation_source: sputum sample

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_assembly_name: freshwater MAG --- LinL4_bin-1161

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Methylophilus sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Institute for Cellular and Intracellular Symbiosis UB RAS


ncbi_organism_name: Brucella melitensis

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Estonia: Tartu

ncbi_organism_name: Enterococcus faecium


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0071

ncbi_submitter: Broad Institute


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Sagittula sp.

ncbi_submitter: Tang lab


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Fudan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Medical University of Gdansk


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Khon Kaen University


ncbi_country: France

ncbi_isolate: WI2 isolate

ncbi_isolation_source: Clinical isolate

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: WI2 isolate

ncbi_submitter: CHU Clermont-ferrand


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-6704

ncbi_organism_name: uncultured Schlesneria sp.

ncbi_submitter: BILS


ncbi_country: USA

ncbi_organism_name: Photobacterium damselae subsp. piscicida

ncbi_submitter: University of Miyazaki Faculty of Agriculture


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_submitter: University of Basel


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nocardiopsis sp. NPDC058631

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured bacterium


ncbi_submitter: EBI


ncbi_organism_name: Muribaculum intestinale


ncbi_strain_identifiers: MKDW 9 MK

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Guelph

ncbi_submitter: University of Guelph


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: SAR116 cluster bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium


ncbi_organism_name: Citrobacter sp. Marseille-Q5395

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2617270763 annotated assembly

ncbi_organism_name: Salinimicrobium catena

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Fluviicola sp.

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: AMPLIFY consortium


ncbi_isolation_source: skin of face; 1 single-cell amplified by MDA combined with human skin metagenome reads

ncbi_organism_name: Faucicola osloensis

ncbi_submitter: bioBiome, Inc.


ncbi_organism_name: uncultured Parvimonas sp.

ncbi_submitter: EMG


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: anastomotic tissue

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chicago


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bilophila wadsworthia


ncbi_country: Italy: Ancona

ncbi_isolation_source: marine sediment

ncbi_submitter: Universita Politecnica delle Marche


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Inquilinaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Kitasatospora aburaviensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces sp. NPDC058985

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Methylocystis sp.


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Candidatus Atribacteria bacterium

ncbi_submitter: The Ohio State University


ncbi_country: Brazil

ncbi_isolation_source: brain

ncbi_organism_name: Weissella tructae

ncbi_submitter: Aquacen - National Reference Laboratory for Aquatic Animal Diseases, Brazilian Ministry of Fisheries and Aquaculture and Laboratory of Cellular and Molecular Genetics, Federal University of Minas Gerais


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella sp. 120904

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Bacteroidales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Dilophus febrilis


ncbi_organism_name: Catalimonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Veterinary Research Institute


ncbi_assembly_name: freshwater MAG --- VK3_bin-0550

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Alteromonas gracilis

ncbi_submitter: CCMAR


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: India: Iewduh; Shillong

ncbi_isolation_source: Retail chicken

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: Blood culture

ncbi_organism_name: Morganella morganii

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1039

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Korea

ncbi_isolation_source: fresh water

ncbi_organism_name: Dechloromonas sp. HYN0024

ncbi_submitter: Korea University


ncbi_organism_name: Pseudoruminococcus massiliensis

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: guangdong

ncbi_isolation_source: Anal Swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Provincial Center for Disease Prevention and Control


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: hospital wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_assembly_name: P. agardhii_No.758

ncbi_organism_name: Planktothrix agardhii

ncbi_submitter: Justus Liebig Universitat


ncbi_isolation_source: metagenome

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Bloodstream

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: South Korea: Suwon

ncbi_isolation_source: soil

ncbi_organism_name: Microvirga aerilata

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: University of Bern


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Oxford


ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Cuba

ncbi_isolation_source: genital smear

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: Masaryk University


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: USA: Athens; GA

ncbi_isolation_source: cow feces

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Rectinema sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: China: Hunan

ncbi_isolation_source: Respiratory; lower

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: single cell amplified by MDA; feces

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Haruko Takeyama Lab., Waseda University


ncbi_organism_name: Bacillus cereus TIAC219

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus TIAC219


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Formosa sp. 4Alg 33

ncbi_strain_identifiers: 4Alg 33

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Formosa;x__unclassified Formosa;s__Formosa sp. 4Alg 33


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 2 0 to 5cm

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Northeastern University


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: Abdominal abscess

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: US Food and Drug Administration


ncbi_isolate: Honey (acacia)

ncbi_organism_name: Apilactobacillus apinorum

ncbi_strain_identifiers: 20H-10;Honey (acacia)

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. P091

ncbi_submitter: University of Aberdeen


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: BAL

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: University of Waterloo


ncbi_country: Germany: Goettingen

ncbi_isolation_source: water surface of eutrophic pond; Goettingen; Germany

ncbi_organism_name: Luteibacter flocculans

ncbi_submitter: Georg-August-University Goettingen


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Loktanella salsilacus

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: AOP5_A1_surf _bin _9

ncbi_organism_name: Brochothrix thermosphacta

ncbi_strain_identifiers: AOP5_A1_surf _bin _9

ncbi_submitter: Genoscope


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Clostridium neonatale

ncbi_submitter: China Conservation and Research Center for the Giant Panda


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Vicingaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Salmonella sp. CQ23WZ0399SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium HGW-Bacteroidetes-3


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: Arcobacter sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Streptomyces sp. NPDC059616

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 12-15 cm

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_assembly_name: freshwater MAG --- KT_bin-1620

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: [Eubacterium] sulci


ncbi_isolation_source: rice sheath

ncbi_organism_name: Pseudomonas asplenii

ncbi_strain_identifiers: IRRI 6609

ncbi_submitter: IRRI


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella sp. 90937

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Bacteroides ovatus


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_strain_identifiers: CKY

ncbi_submitter: Enze Hospital


ncbi_country: Arctic Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Third Institute of Oceanography, Ministry of natural resources


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_country: USA: PA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonadaceae bacterium UBA858

ncbi_submitter: University of Queensland


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_country: USA: Gulf of Mexico

ncbi_isolation_source: sample BD02T64 sea water enriched with oil for 64 days

ncbi_organism_name: Nonlabens dokdonensis

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;s__Candidatus Wolfebacteria bacterium RIFCSPHIGHO2_01_FULL_48_22


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Japan:Hokkaido; Akkeshi; Lake Akkeshi

ncbi_organism_name: Sulfuriflexus mobilis

ncbi_submitter: The Institute of Low Temperature Science, Hokkaido University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China

ncbi_isolation_source: seawater surrounding coral Acropora digitifera under normal condition

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: Clean room

ncbi_organism_name: Alcaligenes sp. 1735tsa3

ncbi_submitter: NASA Johnson Space Center


ncbi_country: USA:Napa County; California

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_strain_identifiers: Stag's Leap

ncbi_submitter: USDA


ncbi_country: China: Hunan

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH16053

ncbi_submitter: South China Agricultural University


ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Japan: Tokyo

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo Hospital


ncbi_organism_name: Desulfomicrobium apsheronum


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Technische Universiteit Delft


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterococcus faecalis


ncbi_country: USA: Chicago

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_assembly_name: Rumen uncultured genome RUG12428

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Italy

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Sapienza University of Rome


ncbi_isolation_source: paddy soil

ncbi_organism_name: Geothrix limicola

ncbi_submitter: Bioproduction Research Institute


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: urine

ncbi_submitter: The University of Queensland


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM51

ncbi_submitter: IGS


ncbi_isolation_source: Environmental; soil rhizosphere

ncbi_organism_name: Burkholderia anthina

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Ireland

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University College Cork


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Nanjing University


ncbi_assembly_name: freshwater MAG --- Loc090907-8-6m_bin-644

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: San Diego

ncbi_isolation_source: lagoon

ncbi_organism_name: Cellulosimicrobium composti

ncbi_submitter: Bellevue University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_assembly_name: freshwater MAG --- MJ110712B_bin-295

ncbi_organism_name: uncultured Methylococcaceae bacterium


ncbi_country: China: Hubei

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0162

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: Human (feces)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 22.H.04


ncbi_organism_name: Psychroserpens sp.

ncbi_submitter: China University of Geosciences


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Phalera bucephala


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Fimbriimonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Ketobacteraceae bacterium


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: Sorangium sp. So ce233

ncbi_strain_identifiers: So ce233

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce233


ncbi_organism_name: Pseudarthrobacter sp. Y6

ncbi_submitter: Wuhan University


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Candidatus Odyssella sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Holosporales;f__Candidatus Paracaedibacteraceae;g__Candidatus Odyssella;x__environmental samples;s__uncultured Candidatus Odyssella sp.


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces roseoviridis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_submitter: UIUC


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: Poland

ncbi_isolation_source: gastrointestinal sample from 4 month old boy with bloody diarrhea

ncbi_organism_name: Campylobacter coli 37/05

ncbi_submitter: Cornell University


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: urine

ncbi_submitter: Servicio Antimicrobianos. INEI-ANLIS #Dr. Carlos G. Malbran"


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Germany: Osterholz-Scharmbeck

ncbi_isolation_source: municipal waste water treatment plant; activated sewage sludge

ncbi_organism_name: Candidatus Velamenicoccus archaeovorus

ncbi_strain_identifiers: LiM

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Velamenicoccus;s__Candidatus Velamenicoccus archaeovorus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Velamenicoccus;s__Candidatus Velamenicoccus archaeovorus


ncbi_country: Bolivia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florence


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: The REHAB Consortium


ncbi_country: Denmark

ncbi_isolation_source: phage resistant culture

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Lactobacillus crispatus


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_isolation_source: feces

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: sugar-beetroot rhizosphere

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aurantiaca