ncbi_assembly_name: IMG-taxon 2651870111 annotated assembly

ncbi_organism_name: Tindallia californiensis

ncbi_strain_identifiers: APO

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Slagelse

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Region Zealand


ncbi_assembly_level: Contig

ncbi_country: Italy: Veneto

ncbi_isolation_source: rabbit meat cut

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Bologna


ncbi_organism_name: uncultured Alistipes sp.


gtdb_representative: t

ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Northeast Forestry University


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Tangshan

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Distal colon

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV258

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Akkermansia muciniphila


ncbi_assembly_name: Protochlamydia greubae

ncbi_organism_name: Candidatus Protochlamydia phocaeensis

ncbi_refseq_category: reference genome

ncbi_submitter: URMITE

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Dorea longicatena

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NHGRI/NIH


ncbi_assembly_level: Complete Genome

ncbi_country: Israel

ncbi_isolation_source: rectal

ncbi_submitter: tel-aviv sourasky medical center


ncbi_assembly_level: Chromosome

ncbi_organism_name: Actinomyces timonensis

ncbi_submitter: University of Alaska Anchorage


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S27

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Metamycoplasma sp.


ncbi_country: South Africa

ncbi_isolation_source: water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pretoria


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_country: China: Sichuan Province

ncbi_isolation_source: anal swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_assembly_name: freshwater MAG --- KR_bin-2786

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Clostridiales bacterium UBA1763

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Huashan Hospitial of Fudan University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: colon

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: University of Alberta


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Humidesulfovibrio sp.


ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Case Western Reserve University


ncbi_country: China: Hefei

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: the First Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD5927

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_country: Baltic Sea

ncbi_organism_name: Porticoccaceae bacterium UBA5969


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: JNTUH


ncbi_country: China: Guangdong

ncbi_isolation_source: gut

ncbi_organism_name: Aeromicrobium piscarium

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__environmental samples;s__uncultured Candidatus Berkelbacteria bacterium


ncbi_organism_name: Methylobacter sp. G7

ncbi_submitter: Tampere University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_assembly_name: freshwater MAG --- YR_bin-2490

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agriculture University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Athalassotoga sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium UBA2022


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Candidatus Meridianibacter frigidus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Galbitalea sp.

ncbi_submitter: Zhejiang University


ncbi_country: Afghanistan

ncbi_isolation_source: Tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_isolation_source: cloacal swab

ncbi_submitter: South China Agricultural University


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Vitreimonas sp.


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-1896

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_country: France: Sexy-les-Bois

ncbi_isolation_source: rhizoplane

ncbi_organism_name: Pseudomonas thivervalensis

ncbi_submitter: Institut de Recherches Microbiologiques - Wiame


ncbi_country: China: Jiangsu

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Yangzhou University


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Aarhus University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: China: Tianjin

ncbi_isolation_source: feces

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Taiwan: Hospital

ncbi_isolation_source: plasma

ncbi_organism_name: Aeromonas dhakensis

ncbi_strain_identifiers: DAMIAN 12594

ncbi_submitter: National Chung Cheng University


ncbi_country: Switzerland

ncbi_isolation_source: Tete de Moine

ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: University of Bern


ncbi_country: Taiwan

ncbi_submitter: national health research institutes


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-3554

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Corynebacterium glutamicum MB001

ncbi_submitter: CeBiTec, Bielefeld University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Michigan


ncbi_country: China: Shenzhen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: INRAE


ncbi_country: India: ICRISAT campus in Hyderabad

ncbi_isolation_source: compost [ENVO:00002170]

ncbi_organism_name: Streptomyces sp. CAI-121

ncbi_submitter: ICRISAT


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-65

ncbi_isolation_source: bioreactor sludge

ncbi_strain_identifiers: new MAG-65

ncbi_submitter: Micoorganism


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Ohio State University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_isolate: UNUOJ

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of three-weeks old elephant

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Tenacibaculum dicentrarchi

ncbi_submitter: Universidad Bernardo OHiggins


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: China

ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB48

ncbi_submitter: Soochow University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: California; Eel River; South Fork Eel River near Piercy

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Runella slithyformis

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Minnesota

ncbi_isolation_source: Freshwater Pond

ncbi_organism_name: Cellulomonas sp. PSBB021

ncbi_submitter: University of Minnesota


ncbi_country: Colombia: Pereira

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: Canada: Montreal

ncbi_isolation_source: Hospital sink

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Japan

ncbi_organism_name: Adlercreutzia hattorii

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Salinibacterium sp. TMP30

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sp. GD03903

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: SPRUCE 495

ncbi_organism_name: Spirochaetia bacterium

ncbi_strain_identifiers: SPRUCE 495

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Portugal: Vila-Real

ncbi_isolation_source: hot spring water

ncbi_organism_name: Aeromonas lusitana

ncbi_submitter: University of Connecticut Graf Lab


ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Kobe Institute of Health


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Cuba: Gardens of the Queen

ncbi_isolation_source: tissue

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Planktothrix prolifica NIVA-CYA 540

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Israel

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heriot-Watt University


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1383

ncbi_submitter: Broad Institute


ncbi_country: Russia: Moscow

ncbi_isolation_source: vent. liquor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_organism_name: Hwangdonia sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Staphylococcus aureus VET0212R


ncbi_organism_name: Leuconostoc falkenbergense


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Chryseobacterium sp.


ncbi_organism_name: Streptomyces cremeus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Candidatus Kerfeldbacteria bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;x__unclassified Candidatus Kerfeldbacteria;s__Candidatus Kerfeldbacteria bacterium


ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Firmicutes bacterium AF22-6AC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF22-6AC


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Actinoallomurus sp. CA-150999


ncbi_organism_name: Candidatus Limadaptatus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limadaptatus;x__unclassified Candidatus Limadaptatus;s__Candidatus Limadaptatus sp.


ncbi_organism_name: Pseudomonas sp. 1079

ncbi_submitter: Connecticut Agricultural Experiment Station


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Colombia

ncbi_isolation_source: Environment

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Antioquia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Nocardioides sp. T5

ncbi_submitter: Nanjing University


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Ixodex crenulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_country: USA: TriCore Reference Laboratories

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria atlantica

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Propionivibrio sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Kiel

ncbi_isolation_source: artificial sea water

ncbi_organism_name: Maritalea porphyrae

ncbi_submitter: Heinrich-Heine University Duesseldorf


ncbi_country: France: Angers

ncbi_isolation_source: Unknow

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: CHU de Rennes


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp. UBA6890

ncbi_submitter: University of Queensland


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21172


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: urine

ncbi_submitter: University of Bern


ncbi_organism_name: Streptomyces sp. NPDC093594

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF15-31

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Nocardia sp. JMUB6875

ncbi_submitter: Division of Infectious Diseases, Jichi Medical University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylocystis sp.

ncbi_submitter: Universite de Montreal


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_country: South Korea: Jeju

ncbi_isolation_source: Baengnokdam Summit Crater Area; Mt. Halla

ncbi_organism_name: Peribacillus sp. JNUCC41

ncbi_submitter: Jeju National University


ncbi_organism_name: Streptomyces sp. NPDC005395


ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_organism_name: Lactobacillus porci

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: Virginia

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Castellaniella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Rhodoferax saidenbachensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- Loc090519-8m_bin-1945

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_isolation_source: Human fecal samples

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: microbial pathogenic ecology group


ncbi_organism_name: Rhodovulum sp. FJ3

ncbi_submitter: xiamen university


ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: CEBITEC


ncbi_country: Pacific Ocean: Juan de Fuca Ridge

ncbi_isolation_source: sample M10 deep-sea hydrothermal sulfide from chimney

ncbi_organism_name: Parcubacteria group bacterium M10-OD1-2

ncbi_submitter: HKUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium M10-OD1-2


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Emory University


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_country: USA: NC

ncbi_isolation_source: porcine pig serum

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Lachnospira sp. UBA4285

ncbi_submitter: University of Queensland


ncbi_country: Germany

ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Munster


ncbi_isolation_source: midribs of infected leaves

ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_submitter: University of California


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Mycobacterium lacus

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus sp. FSL K6-3157

ncbi_submitter: Penn State


ncbi_organism_name: Pseudomonas sp. YuFO20

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: Institute of Marine Research


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Thermoleophilia bacterium UBA6103


ncbi_country: USA: Massachusetts

ncbi_isolation_source: dental plaque

ncbi_organism_name: candidate division SR1 bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;x__unclassified Candidatus Absconditabacteria;s__candidate division SR1 bacterium


ncbi_country: Japan

ncbi_isolation_source: dropping

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Sphingobacterium spiritivorum

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Psychrobacillus sp. L4

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Parma


ncbi_organism_name: Eubacterium callanderi

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Synechococcus sp. O70.2

ncbi_submitter: University of Montana


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: McGill University


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Megasphaera sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- Day6-3_bin-555

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Halieaceae bacterium UBA5105

ncbi_submitter: University of Queensland


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__candidate division WS6 bacterium GW2011_GWC1_36_11


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Equipe PHySE - HydroSciences Montpellier


ncbi_isolation_source: periodontal pocket

ncbi_organism_name: Eubacterium infirmum F0142

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__[Eubacterium] infirmum;x__Eubacterium infirmum F0142


ncbi_country: China: Tengchong

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Arthrobacter ginsengisoli

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Spain: Asturias

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: USA: Bronx; NY

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: JCVI


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: 2969MB;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-finished water

ncbi_organism_name: Leptospira sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Urinary Tract Infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Puerto Rico: Ceiba

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Prof. Bart Currie, Menzies School of Health Research


ncbi_country: China: Nanchang; Poyang Lake

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_country: USA: Lexington; Kentucky

ncbi_isolation_source: equine placenta

ncbi_organism_name: Amycolatopsis lexingtonensis

ncbi_submitter: USDA/ARS/NCAUR


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_organism_name: Escherichia coli

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: USA: NY

ncbi_isolation_source: stem from an asymptomatic apple

ncbi_organism_name: Pantoea agglomerans Eh318

ncbi_submitter: University of Regina

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Pantoea;x__Pantoea agglomerans group;s__Pantoea agglomerans;x__Pantoea agglomerans Eh318


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: McMaster University


ncbi_organism_name: Actinomyces naeslundii


ncbi_organism_name: Scytonema sp. PRP1

ncbi_submitter: Boyle Lab - University of Michigan


ncbi_organism_name: Pseudomonas sp. LTR0

ncbi_submitter: Binzhou University


ncbi_country: USA: DC

ncbi_isolation_source: Stool

ncbi_organism_name: Morganella morganii

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Moutai town in Guizhou near the Chishui river

ncbi_isolation_source: Moutai flavour Daqu

ncbi_organism_name: Streptomyces sp. FBKL.4005

ncbi_submitter: Guizhou university


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya: Yatta

ncbi_isolation_source: lung

ncbi_strain_identifiers: Yatta;B

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capripneumoniae


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 721

ncbi_strain_identifiers: CIM:MAG 721

ncbi_submitter: Mayo Clinic


ncbi_organism_name: Priestia filamentosa

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Edinburgh


ncbi_country: USA: Boston

ncbi_isolation_source: stool

ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: Brigham & Women's Hospital, Harvard Medical School


ncbi_country: USA

ncbi_isolation_source: leg wound

ncbi_organism_name: Mycolicibacterium boenickei

ncbi_submitter: Uppsala University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium aurimucosum

ncbi_submitter: US Food and Drug Administration

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: AAFC


ncbi_country: China

ncbi_isolation_source: soil in hypersaline habitat

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Pseudonocardiales;f__Pseudonocardiaceae;g__Saccharomonospora;s__Saccharomonospora iraqiensis;sb__Saccharomonospora iraqiensis subsp. paurometabolica;x__Saccharomonospora iraqiensis subsp. paurometabolica YIM 90007


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Halothiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Kingella denitrificans


gtdb_type_species_of_genus: t

ncbi_country: China: Xiamen; Fujian

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Mangrovimonas yunxiaonensis

ncbi_submitter: School of Life Sciences, Xiamen University


ncbi_country: Germany

ncbi_organism_name: Chlamydia psittaci 04DC42

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: China: Malan

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI-Qingdao


ncbi_organism_name: Myxococcus sp. MxC21-1

ncbi_submitter: BGI


ncbi_organism_name: Prochlorococcaceae cyanobacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: Taiwan: Guishan Island

ncbi_isolation_source: surface seawater

ncbi_organism_name: Oceaniovalibus guishaninsula JLT2003

ncbi_submitter: State Key Laboratory for Marine Environmental Science,  Xiamen University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-3 day 1472

ncbi_organism_name: Mesotoga sp.

ncbi_submitter: The Ohio State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan Agricultural University


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S095_02888

ncbi_submitter: Zhejiang University


ncbi_country: Ghana: Accra

ncbi_isolation_source: sediment; water and sewage treatment plant

ncbi_submitter: University of Ghana


ncbi_isolation_source: vagina

ncbi_organism_name: Veillonellaceae bacterium DNF00751

ncbi_submitter: The Genome Institute at Washington University


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-3506

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Parascardovia denticolens

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil

ncbi_isolation_source: Chocolate Mousse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: The REHAB Consortium


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: the intestinal contents of Marmot

ncbi_organism_name: Microbacterium wangruii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: India: Vellore

ncbi_submitter: Christian Medical College Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ceyco


ncbi_isolation_source: Colon

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Limosilactobacillus vaginalis


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Yantai University


ncbi_organism_name: Prevotella sp.


ncbi_submitter: University of Waterloo


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 683

ncbi_submitter: Ghent University


ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: dtu national food institute


ncbi_country: Australia: Brisbane

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: uncultured Kangiella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: JCVI


ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: uncultured bacterium


ncbi_country: Brazil: Canaa dos Carajas

ncbi_isolation_source: water

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia

ncbi_isolation_source: plant

ncbi_organism_name: Rathayibacter sp. VKM Ac-2762

ncbi_strain_identifiers: VKM Ac-2762

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB241_529D18

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Xiamen University


ncbi_country: South Africa: Zola

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mammary gland

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Pauljensenia sp.

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-156-04_S4_C2

ncbi_submitter: IGS


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Haliea sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_assembly_name: Rumen uncultured genome RUG14459

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC061G04

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Streptomyces sp. 1268

ncbi_submitter: Chongqing University of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Spain: A corunna

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_isolation_source: wine

ncbi_organism_name: Liquorilactobacillus mali

ncbi_submitter: Shanghai Majorbio


ncbi_country: Poland

ncbi_isolation_source: Childrens hosptial

ncbi_submitter: UNIVERSITY OF MINNESOTA


ncbi_organism_name: Escherichia marmotae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Ancylomarina sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Sao Paulo


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Desulforhopalus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Acholeplasmataceae bacterium


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: BGI


ncbi_organism_name: uncultured Thioalkalivibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom: England

ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: CDC


ncbi_country: China: Qinghai

ncbi_isolation_source: soil

ncbi_organism_name: Dyadobacter chenhuakuii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Chitinophaga sp. Hz27

ncbi_submitter: Kyonggi university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia

ncbi_isolation_source: root of native pine tree

ncbi_organism_name: Actinomycetospora callitridis

ncbi_submitter: KASETSART UNIVERSITY


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Coriobacteriaceae bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_strain_identifiers: 3111 StPb PI

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Milk powder

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University of Zurich


ncbi_isolation_source: Proximal colon


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B379;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Owenweeksia sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Streptomyces sp. NPDC057197


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Leyella stercorea

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_isolation_source: sputum

ncbi_submitter: University of Trento


ncbi_country: China: Suzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Suzhou Hospital of Traditional Chinese Medicine


ncbi_submitter: The ithree institute


ncbi_country: China: Jiangsu

ncbi_isolation_source: seawater from white shrimp (Litopenaeus vannamei) tank

ncbi_organism_name: Vibrio owensii

ncbi_submitter: Liaocheng University


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__;c__;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Coneutiohabitans;s__Candidatus Coneutiohabitans thermophilus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Coneutiohabitans;s__Candidatus Coneutiohabitans thermophilus


ncbi_submitter: GIHE(Gyeonggi-do Institute of Health & Environment)


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Switzerland: CHUV; Lausanne

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Lausanne


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 317

ncbi_organism_name: Staphylococcus gallinarum

ncbi_strain_identifiers: SNUC 2111

ncbi_submitter: University of Calgary


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: China Agriculture university


ncbi_country: Mexico: Mexico City

ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: Center for Genomic Sciences, UNAM


ncbi_country: China: Hangzhou

ncbi_submitter: Zhejiang university


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV241

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Brachymonas sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Lactobacillaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Mycoplasmoides genitalium M2321

ncbi_submitter: Louisiana State University Health Sciences Center


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Roseicyclus marinus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Wolbachia pipientis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: Fujian Provincial Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Fujian Provincial Hospital;Kp2424

ncbi_submitter: Fujian  Agriculture and Forestry  University


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: The Ohio State University College of Dentistry


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: University of Copenhagen


ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG13

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_isolation_source: marine water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mesorhizobium caraganae

ncbi_submitter: Aarhus University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Peking University


ncbi_organism_name: uncultured bacterium


ncbi_submitter: University of Southern California


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of Vienna


ncbi_isolation_source: Herd 324

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: SNUC 5746

ncbi_submitter: University of Calgary


ncbi_country: USA: Florida

ncbi_isolation_source: skin swab

ncbi_organism_name: Paracholeplasma manati

ncbi_strain_identifiers: Holly

ncbi_submitter: US FDA


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Gemella sanguinis

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Villafranca; Navarra

ncbi_isolation_source: Sewage

ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: CDC


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: University of Queensland


ncbi_country: USA: Arizona

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_isolation_source: faecal

ncbi_organism_name: Clostridium perfringens


ncbi_organism_name: Arsenicicoccus sp. UBA7492


ncbi_country: USA: NYC

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Germany: Goettingen

ncbi_organism_name: Clostridia bacterium


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: South Korea: Chungbuk

ncbi_isolation_source: Pleural fluid

ncbi_organism_name: Gemella sp. ND 6198

ncbi_submitter: Korea National Institute of Health, Korea Centers for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Gemellaceae;g__Gemella;x__unclassified Gemella;s__Gemella sp. ND 6198


ncbi_country: China: Fujian; Xiamen

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: XM-RG

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Proteiniphilum sp. UBA4846


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: Cardiobacterium valvarum

ncbi_submitter: EMG


ncbi_organism_name: Botrimarina mediterranea

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_submitter: UNIVERSITY OF TEXAS SOUTHWESTERN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_organism_name: Enterobacter genomosp. O

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__Enterobacter cloacae complex clade O;s__Enterobacter genomosp. O


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Shanghai

ncbi_organism_name: Listeria monocytogenes SHL016

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: McGill University


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_name: IMG-taxon 2671180172 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFIX51

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_country: Japan

ncbi_organism_name: Mycobacterium kiyosense

ncbi_submitter: Department of Mycobacteriology, Leprosy Research Center, National Institute of Infectious Diseases - Japan


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. H34-S4

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D9_bin-0373

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium


ncbi_country: Japan: Tateyama

ncbi_isolation_source: obtained from ATCC culture collection

ncbi_organism_name: Streptomyces tateyamensis

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: EPI HHMI


ncbi_country: Canada: Ontario

ncbi_isolation_source: Broiler

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120007


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 44

ncbi_strain_identifiers: CHS 44

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 44


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_assembly_name: IMG-taxon 2671180135 annotated assembly

ncbi_organism_name: Nitrosomonas marina


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Sweden

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Rheinheimera sp. MMS21-TC3

ncbi_submitter: Chungnam National University


ncbi_assembly_name: BGJ

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: BGJ

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Capital Institute of Pediatrics,Beijing, China


ncbi_country: USA: CT

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: California

ncbi_organism_name: Campylobacter lari subsp. concheus

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Enterococcus rotai

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium rhinophilum

ncbi_submitter: Duke University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Laboratory of Soil Science, Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo


ncbi_country: Turkey: Adiyaman; Besni

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Georgia


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Castile and Leon; Matanza

ncbi_organism_name: Phyllobacterium sp. 0TCS1.6A

ncbi_submitter: Universidad de Salamanca


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_submitter: FISABIO - Public Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Athalassotoga sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Switzerland

ncbi_isolation_source: Superficial Wound Swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_strain_identifiers: PEER 926

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_isolation_source: Pre-slaughter chicken

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_assembly_name: freshwater MAG --- Ja1-D2_bin-0325

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: blood

ncbi_submitter: Zhejiang university


ncbi_organism_name: Clostridium acetobutylicum EA 2018

ncbi_submitter: Institute of plant physiology and ecology, Shanghai institutes for biological sciences, Chinese academy of sciences


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: The Ohio State University


ncbi_country: USA: Tennessee

ncbi_isolation_source: root

ncbi_organism_name: Pseudomonas sp. GM102

ncbi_submitter: Oak Ridge National Lab


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: dtu national food institute


ncbi_organism_name: Streptomyces sp. NPDC048508

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: uncultured Saprospirales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Saprospiria;o__Saprospirales;x__environmental samples;s__uncultured Saprospirales bacterium


ncbi_organism_name: Borrelia recurrentis

ncbi_strain_identifiers: PAbJ

ncbi_submitter: Michigan State University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Methylocystaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Aestuariivirga sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Salmonella sp. SKLX082008

ncbi_submitter: Zhejiang university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Zoogloea sp.

ncbi_submitter: NanJing University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 153 (3-9344314)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 153 (3-9344314)


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: China: Tibet

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Pfizer


ncbi_isolation_source: Not Known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Corynebacterium diphtheriae


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Oviedo


ncbi_assembly_name: freshwater MAG --- MJ110802A_bin-427

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Sedimentibacter sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus oralis SK100

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Customs


ncbi_country: Greece

ncbi_isolation_source: bile

ncbi_submitter: University Hospital of Larissa


ncbi_country: USA: Texas; Weatherford

ncbi_isolation_source: wound

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_submitter: Northeastern University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Agathobacter rectalis


ncbi_country: USA: Lake; FL

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Australia: Port Phillip Bay; Heron Island and Pacific Ocean; Munida Microbial Observatory Time Series

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Bacillus sp. FSL W7-1085

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL W7-1085


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1103S

ncbi_submitter: Broad Institute


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC091294

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Vibrio splendidus 12B01

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Flavonifractor sp.

ncbi_submitter: Biomin Research Center


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: FL; Ft. Lauderdale

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pseudoalteromonas sp. CnMc7-15

ncbi_submitter: Meyer Microbes Lab


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptomyces phaeochromogenes

ncbi_submitter: Technical University of Denmark


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oleispira sp.


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: China University of Geosciences


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: University of Chicago


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Oak Ridge

ncbi_submitter: Oak Ridge National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Gracilibacteria bacterium HOT-871


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Singapore

ncbi_isolation_source: sediments

ncbi_organism_name: Lysobacterales bacterium UBA5700

ncbi_submitter: University of Queensland


ncbi_submitter: University of Florida


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Switzerland

ncbi_isolation_source: cheese starter culture

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Agroscope


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Helcococcus ovis


ncbi_country: Denmark

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: Brazil: Florianopolis; UFSC

ncbi_isolation_source: Mimosa scabrella shoot

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: UFSC


ncbi_country: India

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. F-3

ncbi_submitter: Shandong University, LushanWang


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 2; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_strain_identifiers: MKDF 66

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_assembly_name: Treponema pedis/isoE1186

ncbi_isolation_source: ear

ncbi_organism_name: Treponema pedis isoE1186

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China