ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Chromosome

ncbi_country: France

ncbi_genome_representation: full

ncbi_strain_identifiers: CFBP 1713

ncbi_submitter: CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CFBP 1713


ncbi_assembly_level: Scaffold

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: Malaysia: Titiwangsa Lake

ncbi_isolation_source: lake sediment

ncbi_organism_name: Streptomyces sp. S1

ncbi_submitter: University of Tsukuba


ncbi_organism_name: Pseudomonas sp. 3296

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail fresh mint

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_assembly_level: Complete Genome

ncbi_country: USA: California

ncbi_isolation_source: lungs

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Viet Nam: Dak Lak

ncbi_isolation_source: soil near root of coffee

ncbi_organism_name: Streptomyces sp. COG20

ncbi_submitter: institute of biotechnology


ncbi_strain_identifiers: KTS.20.030 TP.THY

ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: wzc-IS

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium baratii

ncbi_submitter: SC


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Chongqing

ncbi_isolation_source: blood from patient

ncbi_organism_name: Burkholderia thailandensis

ncbi_strain_identifiers: BPM

ncbi_submitter: Daping Hospital, Army Medical University


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: intestine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: City University of Hong Kong


ncbi_country: China: Tengchong; Diretiyan hot spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Candidatus Solincola tengchongensis

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Candidatus Geothermincolia;o__Candidatus Geothermincolales;f__Candidatus Geothermincolaceae;g__Candidatus Solincola;s__Candidatus Solincola tengchongensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Geothermincolia;o__Candidatus Geothermincolales;f__Candidatus Geothermincolaceae;g__Candidatus Solincola;s__Candidatus Solincola tengchongensis

ncbi_type_material_designation: assembly from type material


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_organism_name: Rhizobium sp. BIGb0125

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Sri Lanka

ncbi_isolation_source: vaginal swab pre-delivery

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Streptomyces phaeochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Erwinia pyrifoliae YKB12327

ncbi_organism_name: Erwinia pyrifoliae

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.


ncbi_country: Brazil: Espirito Santo

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: FIOCRUZ


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: fruit

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Agricultural Research Council-API


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Arcicella sp.

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_country: Brazil: Abrolhos reef system

ncbi_isolation_source: turf

ncbi_organism_name: Adonisia turfae CCMR0081

ncbi_refseq_category: reference genome

ncbi_submitter: Federal University of Rio de Janeiro

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__Cyanobacteriota incertae sedis;g__Adonisia;s__Adonisia turfae;x__Adonisia turfae CCMR0081


ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_country: United Kingdom:England


ncbi_country: Poland

ncbi_organism_name: Paenibacillus lautus

ncbi_strain_identifiers: PLV

ncbi_submitter: University of Agriculture in Krakow


ncbi_country: China

ncbi_isolation_source: pig farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Africa: Johannesburg

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: NHLS Research Trust


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea: Sacheon-si; Gonmyeong-myeon

ncbi_submitter: National Institute of Crop Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. coronafaciens


ncbi_isolation_source: sputum samples

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhaoqin Center for Disease Control and Prevention


ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: not known


ncbi_country: Spain: Badalona

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: USA: VA

ncbi_isolation_source: ATCC Isolate

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: US Food and Drug Administration


ncbi_country: Taiwan

ncbi_isolation_source: feces

ncbi_organism_name: Mediterraneibacter sp. gm002

ncbi_submitter: Food Industry Research and Development Institute


ncbi_country: USA

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans B102SM-B

ncbi_submitter: New York University College of Dentistry


ncbi_country: Canada: Alberta

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Rhode Island Hospital


ncbi_organism_name: Streptococcus pyogenes GA41046

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Nepal

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Turkey: Samsun

ncbi_organism_name: Micromonospora sp. H61

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Linnaeus University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: water

ncbi_organism_name: Grimontia marina

ncbi_strain_identifiers: CECT 8713

ncbi_submitter: UVEG


ncbi_organism_name: Candidatus Onthomonas avicola

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Onthomonas;s__Candidatus Onthomonas avicola


ncbi_country: China: Shandong

ncbi_isolation_source: chicken legs and breast from supermarket

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_submitter: Beijing University of Chemical Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: Mashed potatoes

ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Zurich


ncbi_isolation_source: shallow marine sediment

ncbi_organism_name: uncultured Pontibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: goat

ncbi_organism_name: Streptococcus equinus

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Klebsiella michiganensis


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Leptospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Methylobacterium sp. NPDC014830

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-0859

ncbi_submitter: BILS


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Serratia marcescens

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: salt crust

ncbi_organism_name: Actinobacteria bacterium QS_8_72_14

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium QS_8_72_14


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_name: E.coli C142

ncbi_isolate: E.coli C142

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: E.coli C142

ncbi_submitter: FUNCTIONAL GENOMICS CENTER ZURICH


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Texas; Dallas

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Canada

ncbi_submitter: Health Canada


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Hong Kong

ncbi_organism_name: Ruegeria sp. HKCCSP335

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Weishan; Yunnan Province

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. CB02120-2

ncbi_submitter: The scripps research institute


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SJOS6004

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Dialister sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_country: USA: Massachusetts

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio breoganii 1C10

ncbi_submitter: MIT


ncbi_isolation_source: dental plaque

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus animalis;x__Ligilactobacillus animalis KCTC 3501 = DSM 20602


ncbi_country: United Kingdom: England

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Sweden

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Orebro University Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Argonne national Lab


ncbi_organism_name: Brucella melitensis

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The National University of Malaysia (UKM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Salmonella enterica

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Auritidibacter sp. Marseille-P8566

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_submitter: University Hospital of Antwerp


ncbi_organism_name: Weissella cibaria

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Brazil

ncbi_isolation_source: soybean

ncbi_organism_name: Bradyrhizobium japonicum SEMIA 5079

ncbi_strain_identifiers: SEMIA 5079

ncbi_submitter: UFRGS


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: University of California, Los Angeles


ncbi_organism_name: Spirillospora sp. NPDC047418

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chryseobacterium jejuense

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Germany

ncbi_isolation_source: Beef meat

ncbi_organism_name: Photobacterium carnosum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: United Arab Emirates: Beach in Dubai

ncbi_organism_name: Streptomyces sp. CB02366

ncbi_submitter: The Scripps Research Institute


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Canada: Dunham; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas sp. B21-012

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huadong Hospital Affiliated to Fudan University


ncbi_country: South Africa

ncbi_isolation_source: stool

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Stellenbosch University


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Australia: Queensland

ncbi_organism_name: Chlamydia pecorum DBDeUG

ncbi_strain_identifiers: DBDeUG

ncbi_submitter: Queensland University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia pecorum;x__Chlamydia pecorum DBDeUG


ncbi_isolation_source: screen

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: Milwaukee; Wisconsin

ncbi_isolation_source: beach water

ncbi_submitter: University of Wisconsin-Milwaukee


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_isolate: aDvar

ncbi_organism_name: Arsenophonus sp.

ncbi_strain_identifiers: aDvar

ncbi_submitter: University of Liverpool


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paenibacillus mucilaginosus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Oligoflexales bacterium

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Polaromonas sp.


ncbi_organism_name: Enterococcus sp. AZ176

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Rhodoglobus sp.


ncbi_organism_name: Spirochaetaceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Antarctica:King George Island

ncbi_isolation_source: maritime zone

ncbi_organism_name: Curtobacterium sp. 458

ncbi_submitter: University of Campinas


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China:Zhejiang province

ncbi_isolation_source: probitic products

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang Tianke High Technology Development Co.Ltd.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Montiers

ncbi_isolation_source: Microscale soil grain

ncbi_organism_name: Streptomyces sp. RLB3-5

ncbi_submitter: Universite de Lorraine - Institut National de la Recherche Agronomique


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Sporomusaceae bacterium UBA1887

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Oregon State University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis SK-B

ncbi_strain_identifiers: SK-B


ncbi_country: India: Vellore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shenzhen

ncbi_organism_name: Dorea longicatena

ncbi_submitter: BGI


ncbi_country: USA: South Dakota

ncbi_isolation_source: Bioreactor

ncbi_organism_name: Priestia megaterium

ncbi_submitter: MR DNA


ncbi_submitter: Sultan Qaboos University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_assembly_name: Rumen uncultured genome RUG13499

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome RUG11840


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: lichen

ncbi_organism_name: Burkholderia sp. PAMC 26561

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Anaerobiospirillum succiniciproducens

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Germany

ncbi_isolation_source: Wild bird

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Belgium

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Universiti Sains Malaysia


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of pavia


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Oxford


ncbi_organism_name: Legionella pneumophila


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab back

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_country: South Korea: Sejong-si

ncbi_isolation_source: riverside soil

ncbi_organism_name: Micromonospora humidisoli

ncbi_submitter: Chungnam National University


ncbi_organism_name: Bordetella pertussis 2356847

ncbi_submitter: JCVI


ncbi_country: USA: NY

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Chile: Chillan

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: INIA Rayentue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Calgary


ncbi_country: Thailand

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: bone

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Justus Liebig University


ncbi_country: USA: Vermont

ncbi_isolation_source: lungs

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


gtdb_type_species_of_genus: t

ncbi_organism_name: Sphingopyxis macrogoltabida

ncbi_submitter: Tohoku university


ncbi_organism_name: Metamycoplasma equirhinis

ncbi_submitter: LABEO


ncbi_organism_name: Kofleriaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Najit Technologies, Inc.


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: China: Guizhou

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: Malaysia: Port Dickson

ncbi_isolation_source: Coastal marine water

ncbi_organism_name: Vibrio sinaloensis

ncbi_submitter: University of Malaya


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Greenland: Scoresbysund

ncbi_isolation_source: gingival mucosa

ncbi_organism_name: Ursidibacter maritimus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: India

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: [Clostridium] clostridioforme 90A7

ncbi_submitter: Broad Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Nitrosomonas ureae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Xanthobacter sp. V4C-4

ncbi_submitter: Harvard Medical School


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 43 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Mycolicibacterium boenickei

ncbi_submitter: URMITE


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Calothrix sp. FACHB-168

ncbi_submitter: South China Normal University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RIFCSPHIGHO2_01_FULL_39_23


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paenibacillus sp. WLX1005

ncbi_submitter: Shenzhen Center for Disease Control and Prevention


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Aneurinibacillus aneurinilyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC053086


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Acidimicrobium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: This work was funded by the University Paris-Sud, France. R.A.B., L.D., and T.N. are members of the Laboratory of Excellence in Research on Medication and Innovative Therapeutics (LERMIT), supported by a grant from the French National Research Agency (ANR-10-LABX-33). This work was also supported by the “PHC Utique” program of the French Ministry of Foreign Affairs, the French Ministry of Higher Education, Research and Innovation and the Tunisian Ministry of Higher Education and Scientific Research under the CMCU project number 21G0807.


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: bacterium HR14

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Microcystis sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Candidatus Competibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;x__environmental samples;s__uncultured Candidatus Competibacter sp.


ncbi_strain_identifiers: CNCI 200

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: USA: Michigan

ncbi_isolation_source: municipal water sourced from an aquifer

ncbi_organism_name: Legionella taurinensis

ncbi_submitter: Virginia Tech


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia: NT

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Fairfield city on Solano county

ncbi_isolation_source: Biological material

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: Spain

ncbi_isolation_source: wound

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Bacillales bacterium UBA5729

ncbi_submitter: University of Queensland


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_country: Australia: Boho South; VIC

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_assembly_name: freshwater MAG --- Ki1-0-7m_bin-1133

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Academia Sinica


ncbi_organism_name: Moraxella sp. ZY21109

ncbi_submitter: Yunnan Animal Science and Veterinary Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Hong Kong: Pokfulam

ncbi_isolation_source: freshwater stream

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Grecian Rocks; Florida

ncbi_isolation_source: marine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: Viet Nam

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: human gut

ncbi_organism_name: Lactobacillus hominis


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Treponema sp. UBA4873

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: China: Jiangmen

ncbi_isolation_source: water

ncbi_organism_name: Novosphingobium aerophilum

ncbi_submitter: Guangdong Academy of Sciences


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Ireland

ncbi_isolation_source: meat

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: University College Cork


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Gemmatimonas phototrophica

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: marine college, shandong university


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Rhodococcus sp. 06-156-4

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 06-156-4


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Rhodococcus sp. DK180

ncbi_submitter: Korea Polar Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. DK180


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Saccharospirillum sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-331

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bacteroidia bacterium

ncbi_strain_identifiers: new MAG-331

ncbi_submitter: Micoorganism


ncbi_country: China

ncbi_isolation_source: marine sediment

ncbi_organism_name: Psychrobacter halodurans

ncbi_submitter: Shangdong university at Weihai


ncbi_isolation_source: throat

ncbi_organism_name: Staphylococcus aureus H23830

ncbi_submitter: Broad Institute


ncbi_country: USA: MN

ncbi_isolation_source: insect

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Washington State

ncbi_isolation_source: instrument

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_strain_identifiers: MRSP 651

ncbi_submitter: Washington State University


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin Swab

ncbi_organism_name: Microbacterium sp. p3-SID131

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: terrestrial

ncbi_organism_name: Mesotoga infera


ncbi_country: Denmark

ncbi_organism_name: Streptococcus suis 6407

ncbi_submitter: China Animal Health and Epidemiology Center


ncbi_country: China: Weihai

ncbi_organism_name: Roseobacter weihaiensis

ncbi_submitter: Shandong Univesity


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom: Aberystwyth

ncbi_organism_name: Fusobacterium necrophorum

ncbi_submitter: Cardiff Metropolitan University


ncbi_organism_name: Helicobacter rodentium


ncbi_organism_name: Achromobacter mucicolens


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_isolation_source: raw milk

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cornell University


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: Viet Nam

ncbi_organism_name: Aeromonas hydrophila

ncbi_strain_identifiers: TN22;vAh ST251

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Japan

ncbi_isolation_source: feces; 3 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: bioBiome, Inc.


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Fimbriimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Salmonella sp. SC7

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Bordetella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Jiangxi Medical College, Nanchang University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Rhodobiaceae bacterium


ncbi_organism_name: Weissella cibaria

ncbi_submitter: Indrashil University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Escherichia sp. WS3009

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Queensland


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: India: Haryana; Gurugram Civil Hospital

ncbi_isolation_source: high vaginal swab

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Interdisciplinary Group for Advanced Research on Birth Outcomes – A DBT India Initiative (GARBH-Ini)


ncbi_country: Germany

ncbi_isolation_source: water

ncbi_organism_name: Lelliottia aquatilis

ncbi_submitter: Justus-Liebig University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Mycolicibacterium rufum

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Belarus

ncbi_isolation_source: sod-podzolic soil

ncbi_organism_name: Bacillus pumilus

ncbi_strain_identifiers: BIM B-171

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD8421

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Burkholderia cenocepacia K56-2Valvano

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Helicobacter canis


ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus sp. FSL W7-1346

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL W7-1346


ncbi_country: Arctic Ocean: Gakkel Ridge; Loki s castle

ncbi_isolation_source: marine sediment core GS08_GC12; 126 cmbsf

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: King's College London


ncbi_organism_name: Halomonas sp. BMC6

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Universidad de Antioquia


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__environmental samples;s__uncultured Latescibacterota bacterium


ncbi_country: Germany: Giessen

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr


ncbi_country: USA

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: University of Florida


ncbi_country: China: Shandong

ncbi_isolation_source: fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: Provincial Hospital Affiliated to Shandong First Medical University


ncbi_country: China

ncbi_isolation_source: gut

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hunan University of Science and Engineering


ncbi_country: Italy: Molveno (TN)

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Corynebacterium phoceense


ncbi_organism_name: Streptococcus pyogenes ABC020030063

ncbi_submitter: Broad Institute


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: Japan: Tokyo

ncbi_organism_name: Corynebacterium glutamicum

ncbi_strain_identifiers: BRC-JBEI 1.1.2

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Fargo

ncbi_isolation_source: uterus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Lactococcus lactis


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: University of California, Davis


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0102


ncbi_organism_name: Alteromonas macleodii


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Firmicutes bacterium TM09-10

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium TM09-10


ncbi_isolation_source: Cardiac surgery

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: AAFC


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: USA: DC

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Madison; Wisconsin

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Enterocloster clostridioformis


ncbi_organism_name: Streptomyces sp. NBC_00304

ncbi_submitter: Technical University of Denmark


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: USA

ncbi_isolation_source: aquarium

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Georgia


ncbi_country: China: Guangdong; Shantou

ncbi_isolation_source: mangrove sediments

ncbi_organism_name: Clostridium diolis

ncbi_strain_identifiers: WST

ncbi_submitter: Shantou University


ncbi_isolation_source: Sediment

ncbi_organism_name: Escherichia coli

ncbi_submitter: MASSEY UNIVERSITY


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lactobacillus crispatus 125-2-CHN

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Bern


ncbi_country: USA:New Jersey

ncbi_isolation_source: soil

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Federal University of Lavras


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1641 from squamous cell carcinomas patient MST029

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Queensland


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptococcus agalactiae FSL S3-027

ncbi_submitter: The J. Craig Venter Institute


ncbi_submitter: Quadram Institutte


ncbi_country: China: Dunhuang

ncbi_isolation_source: sediment of a terrestrial spring

ncbi_organism_name: Halovulum dunhuangense

ncbi_submitter: Institute of Microbiology, CAS


ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus australis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-42

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: South Korea: Seoul

ncbi_isolation_source: ganjang; Korean traditional soy sauce

ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: Chung-Ang Univiersity

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AK

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_country: Georgia

ncbi_isolation_source: dead bats

ncbi_organism_name: Yersinia enterocolitica

ncbi_strain_identifiers: LC18E NCDC B Int 9-14

ncbi_submitter: NCDC of Georgia


ncbi_organism_name: Muribaculum intestinale


ncbi_country: Laos: Vientiane

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: INRS - Centre Armand-Frappier Sante-Biotechnologie


ncbi_country: USA: Evanston; Illinois

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter hepaticus ATCC 51449

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Limnocylindria bacterium


ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Korea National Insititute of Health


ncbi_country: Netherlands

ncbi_isolation_source: Cider lemonade

ncbi_organism_name: Gluconobacter potus

ncbi_submitter: Ghent University


ncbi_organism_name: Deinococcaceae bacterium

ncbi_submitter: University of South Africa


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: water

ncbi_organism_name: Psychrobacter sp. BI730

ncbi_submitter: IFREMER


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom

ncbi_isolation_source: sputum

ncbi_organism_name: Pandoraea apista

ncbi_submitter: Public Health England


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: University of California, Los Angeles


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_assembly_name: CCCM 125

ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: CCCM 125

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Gluconobacter cerinus

ncbi_submitter: Teagasc


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CHU Arnaud de Villeneuve Montpellier


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC102467

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces mutabilis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: uncultured Rheinheimera sp.


ncbi_organism_name: Vibrio campbellii

ncbi_submitter: ICAR-Central Institute of Brackishwater Aquaculture


ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-a_bin-466

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Alberta

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of Calgary


ncbi_assembly_name: freshwater MAG --- Umea1_bin-0189

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Anaerolineaceae bacterium UBA6801

ncbi_submitter: University of Queensland


ncbi_country: Nigeria: Adamawa state

ncbi_isolation_source: pleural fluid

ncbi_organism_name: Mycoplasma mycoides subsp. mycoides

ncbi_submitter: IZSAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. mycoides


ncbi_country: Russia: Nizhny Novgorod

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_country: South Africa: Western Cape Province

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lachnospira eligens

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Dubosiella newyorkensis


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: China

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: China: Beijing

ncbi_organism_name: Nocardia transvalensis

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Max von Pettenkofer-Institute


ncbi_country: Bangladesh

ncbi_isolation_source: water sample

ncbi_organism_name: Vibrio cholerae O1 str. EM-1727

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. EM-1727


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_assembly_name: IMG-taxon 2693429500 annotated assembly

ncbi_organism_name: Arboricoccus pini

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Cinvestav


ncbi_country: Namibia: Namib Desert

ncbi_isolate: NAM bin18

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: NAM bin18

ncbi_submitter: Monash University


ncbi_country: Switzerland

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Aurantimonadaceae bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_isolation_source: rat gut

ncbi_organism_name: Alistipes sp. UBA7106

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_country: Brazil: Anavilhanas; AM

ncbi_isolation_source: Trachymyrmex fungus garden

ncbi_organism_name: Chryseobacterium sp. Tr-659

ncbi_submitter: UW-Madison


ncbi_isolation_source: gingival crevice

ncbi_organism_name: Catonella morbi ATCC 51271

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Catonella;s__Catonella morbi;x__Catonella morbi ATCC 51271


ncbi_country: Canada: New Brunswick; Bouctouche

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Shewanella sp. SP2S2-6

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Flexivirga oryzae

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD2_bin-0351

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_country: USA

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_isolation_source: stool

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000961


ncbi_organism_name: Azospirillum brasilense

ncbi_submitter: NJAU


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SJOS6022

ncbi_submitter: Broad Institute


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0889S


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter coli

ncbi_submitter: FDA


ncbi_organism_name: uncultured Rhodothermales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;c__Rhodothermia;o__Rhodothermales;x__environmental samples;s__uncultured Rhodothermales bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia schinkii

ncbi_submitter: University of Chicago


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Johannesburg


ncbi_organism_name: Paenibacillus macerans

ncbi_submitter: NARO Institute of Livestock and Grassland Science

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Columbia University


ncbi_submitter: Center for Microbial Communities


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: China: Hubei

ncbi_isolation_source: joint

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_country: Germany

ncbi_isolation_source: vagina

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 11264

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_submitter: University of Galway


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_submitter: Wroclaw University of Environmental and Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Mali

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Enterococcus sp. HMSC069A01

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: EMG


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Cepheid


ncbi_isolate: Psychrobacter immobilis A351

ncbi_isolation_source: poultry carcass

ncbi_organism_name: Psychrobacter immobilis

ncbi_strain_identifiers: Psychrobacter immobilis A351

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: municipal wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Norway: More og Romsdal

ncbi_isolation_source: salmon tissue (head kidney)

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Streptomyces decoyicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Haliea sp.


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: lab strain

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Bern

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_country: Australia: Northam; Western Australia

ncbi_isolation_source: Antoni s farm; Antonio Rd.

ncbi_organism_name: Mesorhizobium australicum WSM2073

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Netherlands: Olburgen

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; full scale (600m3) reactor for the removal of ammonium from wastewater from the potato processing industry

ncbi_organism_name: Chloroflexi bacterium OLB15

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium OLB15


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of California Berkeley


ncbi_submitter: Spribille Lab


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Ruminobacter sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Jeotgalibacillus terrae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Streptococcus sp. 2021WUSS124

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Streptomyces hiroshimensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Mycobacterium tuberculosis F11

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: North-West; Potchefstroom

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Bacillus sp. B4-WWTP-NA-D-NA-NA

ncbi_submitter: North West University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. B4-WWTP-NA-D-NA-NA


ncbi_country: China

ncbi_isolation_source: gill

ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: Bsi

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Brazil

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bifidobacterium pseudolongum


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 44327_6

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Chapel Hill; North Carolina

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Bronchial wash

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Prevotellamassilia timonensis


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Jilin

ncbi_organism_name: Bartonella apihabitans

ncbi_submitter: China Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: Japan: Nagano; Suwa

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pseudomonas lurida

ncbi_submitter: KU Leuven


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Megasphaera butyrica

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: USA: Tift Co. GA

ncbi_isolation_source: Thrips

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: shallow marine sediment

ncbi_organism_name: uncultured Aliiroseovarius sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 207

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: SNUC 1937

ncbi_submitter: University of Calgary


ncbi_organism_name: Anaerobiospirillum succiniciproducens DSM 6400

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Colombia: Cundinamarca

ncbi_isolation_source: commercial swine

ncbi_organism_name: Leptospira interrogans serovar Lai

ncbi_submitter: CORPOICA


ncbi_organism_name: Enterococcus faecalis EnGen0334

ncbi_submitter: Broad Institute


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Stockholm University


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Salmonella enterica CVM N41734-SQ v1.0

ncbi_isolation_source: Chicken Breast

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: Homo Sapiens

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Nottingham


ncbi_country: Hungary: Albert major

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Qipengyuania flava

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Lactobacillus juensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Heilongjiang

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: College of life science


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Scatomorpha merdavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha merdavium


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Fibrimonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;c__Fibrobacteria;o__Candidatus Fibrimonadales;f__Candidatus Fibrimonadaceae;s__Candidatus Fibrimonadaceae bacterium


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Ghana

ncbi_isolation_source: fish

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: uncultured Mesocricetibacter sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Robiginitalea marina

ncbi_submitter: shangdong university at Weihai