ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: CAU


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_level: Contig

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Planktomarina sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


gtdb_representative: t

ncbi_organism_name: Arenimonas sp.

ncbi_submitter: Xiamen University


ncbi_country: Taiwan: Pingtung

ncbi_isolation_source: Digestive tract of larval Oryctes rhincoeros collected from areca wood

ncbi_organism_name: Chryseobacterium oryctis

ncbi_refseq_category: reference genome

ncbi_submitter: National Taiwan University


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Salmonella sp. SAL00644

ncbi_submitter: Zhejiang university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptomyces sp. NBC_00519

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_country: USA

ncbi_isolation_source: nare

ncbi_organism_name: Staphylococcus epidermidis NIHLM087

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_country: China

ncbi_isolation_source: chicken waste

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University


ncbi_submitter: Universidad El Bosque


ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_submitter: Universidad de Cantabria


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of Oklahoma


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- Umea_bin-02845

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: MD

ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Central China Fuwai Hospital of Zhengzhou University

ncbi_isolation_source: Secretion from patient

ncbi_submitter: YangZhou university


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Australia

ncbi_isolation_source: cattle feces

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Belgium

ncbi_organism_name: Actinobacillus equuli subsp. haemolyticus

ncbi_submitter: Universiteit Gent


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: China: Shanghai

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Shanghai Ocean University


ncbi_country: Spain: Valencia

ncbi_isolation_source: Biofilm clogging water pumps in ice machines

ncbi_organism_name: Methyloversatilis discipulorum

ncbi_submitter: Darwin Bioprospecting Excellence


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Lethbridge Research Centre


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas;s__Selenomonas ruminantium;sb__Selenomonas ruminantium subsp. lactilytica;x__Selenomonas ruminantium subsp. lactilytica TAM6421


ncbi_organism_name: Pseudochrobactrum saccharolyticum


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acetatifactor muris

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: University of Birmingham


ncbi_country: France: Reims

ncbi_isolation_source: rhizosphere of maize

ncbi_organism_name: Burkholderia sp. BE12

ncbi_submitter: Reims university


ncbi_organism_name: uncultured Corynebacterium sp.


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: enrichment of activated sludge from Daejeon WWTP

ncbi_organism_name: Azovibrio sp.

ncbi_submitter: KAIST


ncbi_country: Peru

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus aureus DAR5878

ncbi_submitter: Broad Institute


ncbi_country: Pacific Ocean: Juan de Fuca Ridge

ncbi_isolation_source: near deep ocean hydrothermal vent

ncbi_organism_name: Pseudoalteromonas agarivorans

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jilin

ncbi_organism_name: Bartonella choladocola

ncbi_submitter: China Agricultural University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Oribacterium sinus

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: USA: IA

ncbi_isolation_source: porcine pig ileum

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. TMS1-20-1

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_submitter: Zhejiang university


ncbi_isolation_source: metagenome

ncbi_organism_name: Brucella melitensis

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_isolation_source: bronchoalveolar lavage fluid (BALF)

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital Affiliated to Zhengzhou University


ncbi_country: China: Anhui

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_country: India: Mumbai

ncbi_isolation_source: milk

ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: Zytex Biotech Pvt. Ltd.


ncbi_isolate: AOP42_A2_surf _bin _15

ncbi_organism_name: Brachybacterium sp.

ncbi_strain_identifiers: AOP42_A2_surf _bin _15

ncbi_submitter: Genoscope


ncbi_country: Germany

ncbi_isolation_source: stoma swab

ncbi_submitter: Universitaetsklinikum Freiburg


gtdb_type_species_of_genus: t

ncbi_isolation_source: Clone isolated from the evolution experiment described in Ketola et al. 2013 (doi: 10.1111/evo.12148)

ncbi_submitter: UNIVERSITY OF JYVASKYLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens ATCC 13880


ncbi_country: Viet Nam: Phu Yen

ncbi_isolation_source: kidney

ncbi_organism_name: Nocardia seriolae

ncbi_submitter: University of the sunshine Coast


ncbi_country: China:Hebei province

ncbi_isolation_source: soil

ncbi_organism_name: Xanthobacter sp. YC-JY1

ncbi_submitter: Chinese academy of agricultural sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: Canada: Ontario

ncbi_isolation_source: waste water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: urine

ncbi_submitter: Instituto Adolfo Lutz


ncbi_assembly_name: IMG-taxon 2663762791 annotated assembly

ncbi_organism_name: Caldicellulosiruptor bescii

ncbi_strain_identifiers: DSMZ 6725

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: Rumen uncultured genome RUG11694

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_assembly_name: freshwater MAG --- UppL4_bin-622

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Switzerland


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: S. enterica Tennessee CDC07-0191

ncbi_isolation_source: urine culture

ncbi_submitter: Illinois Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee;x__Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Italy

ncbi_submitter: Sapienza University of Rome


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Indian Ocean: Red Sea

ncbi_isolation_source: (DCM) deep chlorophyll maximum layer

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: national health research institutes


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Kenya

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: Shenzhen Research Institute, The Chinese University of Hong Kong


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Vaginal secretion

ncbi_submitter: Jinan University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Streptococcus lutetiensis


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Coriobacteriaceae bacterium


ncbi_organism_name: Glaciecola sp. HTCC2999

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Phycisphaerales bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pantoea sp. sgz302252

ncbi_submitter: fujian agriculture and forest university


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_assembly_level: Chromosome

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: PAE_CN 5

ncbi_submitter: University of Milan


ncbi_organism_name: Dialister hominis


ncbi_isolate: AOP35_04H_surf _bin _18

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP35_04H_surf _bin _18

ncbi_submitter: Genoscope


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Boston College


ncbi_organism_name: Paraburkholderia graminis

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Roseburia faecis


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin19

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: HIE bin19

ncbi_submitter: Monash University


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: marine ANAMMOX bioreactor

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: KAUST


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil: Fortaleza


ncbi_organism_name: Campylobacter sp. RM9331

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: chicken caecal content


ncbi_organism_name: Bacillus mycoides KBAB4

ncbi_submitter: UMR 1253, INRA/Agrocampus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus mycoides;x__Bacillus mycoides KBAB4


ncbi_organism_name: Proteus sp. G4379

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4379


ncbi_country: Netherlands

ncbi_organism_name: Rodentibacter pneumotropicus

ncbi_submitter: University of Copenhagen


ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Aeromonadales;f__Aeromonadaceae;g__Aeromonas;s__Aeromonas salmonicida;sb__Aeromonas salmonicida subsp. salmonicida;x__Aeromonas salmonicida subsp. salmonicida 01-B526


ncbi_country: China: Qinghai Province

ncbi_organism_name: Nocardioides marmotae

ncbi_submitter: China CDC


ncbi_country: Brazil

ncbi_isolation_source: Fecal swab

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: LAPCOM - FMVZ - USP


ncbi_strain_identifiers: ATCC BAA-1738

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_organism_name: Gallibacterium genomosp. 3


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Brigham & Women's Hospital


ncbi_isolation_source: Herd 201

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: SNUC 1642

ncbi_submitter: University of Calgary


ncbi_country: Pakistan

ncbi_isolation_source: fecal sample

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Candidatus Flexifilum affinis

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__Candidatus Flexifilaceae;g__Candidatus Flexifilum;s__Candidatus Flexifilum affinis


ncbi_country: Argentina: Victoria

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_country: USA

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UC San Diego


ncbi_country: Uruguay

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_organism_name: Sedimentitalea todarodis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources of PR China


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Slurry

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Nottingham


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Sphingorhabdus sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Cepheid


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Streptomyces sp. 3211.6

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Mesoplasma florum L1

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris


ncbi_organism_name: Candidatus Syntrophosphaera sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;x__unclassified Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera sp.


ncbi_country: Japan

ncbi_isolation_source: environmental sample

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;s__Priestia megaterium;x__Priestia megaterium NBRC 15308 = ATCC 14581


ncbi_country: Iran: Tehran

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: University of Tehran


ncbi_country: Austria: Rauriser Urwald; Rechteckteich

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter asymbioticus

ncbi_submitter: University of Innsbruck


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Rectal swab 2

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Central del Ecuador


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Cypionkella sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: Atlantic Ocean: Portugal; Azores

ncbi_isolation_source: water from hydrothermal vent

ncbi_organism_name: Thermosipho sp. 1063

ncbi_submitter: University of Oslo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;o__Thermotogales;f__Fervidobacteriaceae;g__Thermosipho;x__unclassified Thermosipho (in: thermotogales);s__Thermosipho sp. 1063


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Shanghai Ruijin Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_isolation_source: stool samples

ncbi_organism_name: Clostridium neonatale

ncbi_submitter: University of Paris


ncbi_isolation_source: hot spring

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: institut national de recherche pour l'agriculture, l'alimentation et l'environnement ( inrae)


ncbi_country: China: Liaoning

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Leucobacter denitrificans

ncbi_submitter: Max Planck Institute for Biology


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_country: China: Zhangzhou city; Fujian province

ncbi_isolation_source: seawater from the shrimp farm

ncbi_organism_name: Bacillus zhangzhouensis

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Paenibacillaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Pseudomonas lurida

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Sichuan

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: Brazil: Rio de Janeiro

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_country: Canada

ncbi_submitter: Health Canada


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: uncultured Holosporaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vampirovibrionales bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020047086

ncbi_submitter: Broad Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Bergeyella sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: OARSA, CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans;x__Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal615


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Northeastern University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Epirrhoe alternata


ncbi_organism_name: Duganella sp. LjRoot269

ncbi_submitter: Aarhus University


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Kocuria palustris

ncbi_strain_identifiers: MER TA 14

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: uncultured bacterium


ncbi_country: Israel: Negev Desert

ncbi_isolate: NEG bin12

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: NEG bin12

ncbi_submitter: Monash University


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Megasphaera sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Bangladesh: Bara Haldia; Matlab upazilla

ncbi_isolation_source: water

ncbi_organism_name: Elusimicrobia bacterium UBA4825

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;x__unclassified Elusimicrobiota;s__Elusimicrobia bacterium UBA4825


ncbi_country: Germany

ncbi_isolation_source: pork

ncbi_submitter: Shanghai Customs


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_assembly_name: Chromosome

ncbi_isolation_source: Kopanisti cheese

ncbi_organism_name: Ligilactobacillus acidipiscis

ncbi_strain_identifiers: ACA-DC 1533

ncbi_submitter: Agricultural University of Athens


ncbi_isolation_source: lymphnode

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Wujia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: KYUNG HEE UNIVERSITY


ncbi_organism_name: Mycoplasma simbae ATCC 49888

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: TZW: DVGW-Technologiezentrum Wasser


ncbi_assembly_name: freshwater MAG --- VK_bin-2283

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_organism_name: Lacipirellulaceae bacterium


ncbi_isolation_source: Faeces


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Harvard University


ncbi_country: Germany: Lake Constance

ncbi_isolation_source: Anaerobic freshwater sediment

ncbi_organism_name: Desulfolutivibrio sulfodismutans


ncbi_organism_name: Segatella copri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Mesonia mobilis

ncbi_submitter: EMG


ncbi_country: Ireland

ncbi_isolation_source: tonsils

ncbi_organism_name: Yersinia enterocolitica subsp. palearctica

ncbi_submitter: University College Dublin


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Gimje

ncbi_isolation_source: quinoa roots

ncbi_organism_name: Chitinophaga agri

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Chlamydia pneumoniae J138

ncbi_submitter: Yamaguchi/Kyushu U.


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Nanjing University


ncbi_organism_name: Pseudomonas sp. OF001

ncbi_submitter: TU Berlin


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Bartonella acomydis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Italy: Perugia

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_country: USA: Cleveland; OH

ncbi_isolation_source: peritoneal abscess

ncbi_organism_name: Lawsonella clevelandensis

ncbi_submitter: CDC


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Acetomicrobium sp.

ncbi_submitter: University of Utah


ncbi_country: Italy

ncbi_isolation_source: Pasta

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Opitutus sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Texas

ncbi_isolation_source: Femur

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The University of Texas at Dallas


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: RIKEN-BRC


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Cellulomonas gelida


ncbi_country: Mexico

ncbi_organism_name: Paraburkholderia sp. XV

ncbi_strain_identifiers: XV

ncbi_submitter: Instituto tecnologico de Sonroa


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Brevibacterium sp. UMB10442

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Dehalococcoides sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA6394

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6394


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Pfizer


ncbi_organism_name: Cutibacterium sp. V970

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Poland: Koszalin

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institiute


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ120620B_bin-240

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7073


ncbi_assembly_name: IMG-taxon 2521172642 annotated assembly

ncbi_organism_name: Pseudomonas sp. LAMO17WK12:I10

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: Department of Medical Technology, Faculty of Health Science, Kumamoto Health Science University


ncbi_organism_name: uncultured Melioribacter sp.


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Vibrio sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Ruminococcus] lactaris


ncbi_isolate: Weissella paramesenteroides UFTM 2.6.1

ncbi_organism_name: Weissella paramesenteroides

ncbi_strain_identifiers: Weissella paramesenteroides UFTM 2.6.1

ncbi_submitter: Embrapa Gado de Leite


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University Hospital Puerta del Mar


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured Faecalibaculum sp.


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Institut Pasteur


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: EMG


ncbi_submitter: Kailuan General Hospital


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: pig gut metagenome


ncbi_isolate: Streptococcus species

ncbi_isolation_source: Human

ncbi_organism_name: bacterium

ncbi_strain_identifiers: Streptococcus species

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_isolation_source: Bumblebee; B. hypnorum

ncbi_organism_name: Hafnia alvei

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Butyrivibrio proteoclasticus FD2007

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_country: South Korea: Yellow sea

ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Salipiger sp. IMCC34102

ncbi_submitter: Inha University


ncbi_organism_name: Mycobacterium tuberculosis H37RvSiena

ncbi_submitter: University of Siena

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis H37Rv;x__Mycobacterium tuberculosis H37RvSiena


ncbi_country: USA: Cleveland

ncbi_isolation_source: cystic fibrosis isolate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Mycoplasmataceae bacterium


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: USA: Iowa

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: Prescottella equi

ncbi_submitter: marine college, shandong university


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Candidatus Termititenax sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy: d__Bacteria;p__Candidatus Margulisiibacteriota;c__Candidatus Termititenacia;o__Candidatus Termititenacales;f__Candidatus Termititenacaceae;g__Candidatus Termititenax;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Termititenacia;o__Candidatus Termititenacales;f__Candidatus Termititenacaceae;g__Candidatus Termititenax;x__unclassified Candidatus Termititenax;s__Candidatus Termititenax sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Peru: Hospital Apoyo; Iquitos

ncbi_organism_name: Leptospira santarosai str. HAI134

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Oviedo


ncbi_country: Turkey

ncbi_isolation_source: lymph node

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_country: Russia

ncbi_isolation_source: mud sample from estuary

ncbi_organism_name: Prosthecochloris ethylica

ncbi_submitter: Bellevue University


ncbi_country: South Korea

ncbi_isolation_source: abnormally spoiled oriental melon

ncbi_organism_name: Janibacter melonis

ncbi_submitter: Yunnan University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: London

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bath


ncbi_country: Paraguay: Piribebuy

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: China: Zhejiang Province; Ximen Island

ncbi_isolation_source: seawater at sediment depth

ncbi_organism_name: Pseudoalteromonas sp. T1lg88

ncbi_submitter: Zhejiang University of Technology


ncbi_organism_name: Luteibacter sp. 1214

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Switzerland

ncbi_submitter: University of Bern


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Monash University


ncbi_country: USA:Las Vegas

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Roseivirga sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Atlantic Ocean

ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Max planck institute for marine microbiology


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Ruminococcus sp. 5_1_39BFAA

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_country: Saudi Arabia: Red Sea; Suakin Deep

ncbi_isolation_source: marine brine pool

ncbi_organism_name: Candidatus Scalindua arabica

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__Candidatus Scalindua arabica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__Candidatus Scalindua arabica


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus sanguinis


ncbi_country: China: Shangluo

ncbi_isolation_source: farmland

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Urethral

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Proteus terrae

ncbi_submitter: the seqafrica consortium


ncbi_country: USA:New York;Manhattan

ncbi_isolation_source: Xenic protist cell culture

ncbi_organism_name: Mesoflavibacter sp.

ncbi_submitter: American Museum of Natural History


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_country: USA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides congonensis


ncbi_organism_name: Bacillus cereus ATCC 14579

ncbi_submitter: Zhejiang Tianke High Technology Development Co.Ltd.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus ATCC 14579


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Czech Republic: Pribram

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter sp. NIPH 298

ncbi_strain_identifiers: NIPH 298

ncbi_submitter: Broad Institute


ncbi_organism_name: Desulfococcaceae bacterium

ncbi_submitter: Pau University


ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_country: Viet Nam: Ha Noi

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Northwestern University


ncbi_country: USA: Georgia

ncbi_isolation_source: Lake Lanier

ncbi_organism_name: Micrococcales bacterium UBA2649

ncbi_submitter: University of Queensland


ncbi_organism_name: Blautia wexlerae


ncbi_organism_name: Salinibacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Streptococcus equinus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Escherichia coli O104:H4 str. Ec11-9450

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. Ec11-9450


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Nigeria: Kano

ncbi_isolation_source: door handle

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute, Germany


ncbi_organism_name: Serratia sp. CY83965

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY83965


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces olivochromogenes

ncbi_submitter: Bielefeld University


ncbi_country: USA: AL

ncbi_isolation_source: abscess

ncbi_organism_name: Campylobacter fetus subsp. fetus


ncbi_country: USA: GA

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: Candidatus Pelethousia gallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Pelethousia;s__Candidatus Pelethousia gallinarum


ncbi_country: Thailand: Nakhon Pathom

ncbi_organism_name: Weissella cibaria

ncbi_submitter: BIOTEC


ncbi_organism_name: Planctomycetota bacterium


ncbi_organism_name: uncultured Beijerinckiaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Pseudomonas carnis

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Nannocystis pusilla

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Tel Aviv University


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Merdimonas faecis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Chile: Region del Maule; Estero Los Robles

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus sp. CF8_St5-17

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Mucilaginibacter limnophilus

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_country: South Korea: Jeju-do; Jeju-si; Doryeonnam 6-gil

ncbi_isolation_source: air

ncbi_organism_name: Hymenobacter sp. 5516J-16

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: United Kingdom: Wales

ncbi_isolation_source: Blood Culture

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Candidatus Fermentithermobacillia;o__Candidatus Fermentithermobacillales;f__Candidatus Fermentithermobacillaceae;x__unclassified Candidatus Fermentithermobacillaceae;s__Candidatus Fermentithermobacillaceae bacterium


ncbi_organism_name: Microbacterium sp. NPDC076768


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_country: USA: Los Angeles; CA

ncbi_isolation_source: Neck/Axilla

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Holdemanella porci

ncbi_submitter: University of Chicago


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: puffed wheat cereal

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 442692 2-4


ncbi_isolation_source: cold seep

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_country: Portugal

ncbi_isolation_source: milk processing plant

ncbi_organism_name: Serratia plymuthica

ncbi_submitter: Harvard Medical School


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: MO

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NBC_01800


ncbi_isolation_source: peanut butter

ncbi_submitter: Florida Department of Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Aminipila sp.

ncbi_submitter: EMG


ncbi_isolate: Honey (polyfloral)

ncbi_organism_name: Apilactobacillus apinorum

ncbi_strain_identifiers: 1H7-5;Honey (polyfloral)

ncbi_submitter: Tokyo University of Agriculture


ncbi_isolation_source: human gut

ncbi_organism_name: Citrobacter koseri


ncbi_country: USA: UC Davis Medical Center

ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: UC Davis


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: Australia: Newcastle

ncbi_organism_name: Gemmiger sp.

ncbi_submitter: University of Queensland


ncbi_country: Germany: Kiel

ncbi_isolation_source: food

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Agrococcus jejuensis

ncbi_submitter: BGI


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Argentina

ncbi_isolation_source: dust

ncbi_organism_name: Clostridium botulinum CDC54088

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Slovakia: Buc

ncbi_submitter: University of Veterinary Sciences


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Germany

ncbi_isolation_source: bile duct of patients with Primary sclerosing cholangitis (PSC)

ncbi_organism_name: Enterococcus sp. FR212

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_country: USA: Durham; NC

ncbi_isolation_source: urine; clean catch

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: University of Alabama in Huntsville


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: South Korea: Seoul

ncbi_organism_name: Christensenella sp.

ncbi_submitter: Yonsei University


ncbi_country: Spain: Seville

ncbi_isolation_source: Sewage sludge

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Institute of Natural Resources and Agrobiology


ncbi_country: China

ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_country: Japan:Ibaraki; Tsukuba city

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella lacticifex

ncbi_submitter: Advanced Analysis Center, National Agriculture and Food Research Organization


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: University of Tennessee


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_country: Brazil

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: India: Meerut

ncbi_isolation_source: milk

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Sardar Vallabhbhai Patel University of Agriculture and Technology


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Warsaw


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_organism_name: Pseudomonas sp. NPDC087697

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: EMG


ncbi_country: Czech Republic: Dobris

ncbi_isolation_source: Mud of a seasonal forest creek

ncbi_organism_name: Acinetobacter sp. ANC 5378

ncbi_submitter: National Institute of Public Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter Taxon 24;x__Acinetobacter Taxon 24D;s__Acinetobacter sp. ANC 5378


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Mycolicibacter terrae

ncbi_submitter: SC


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Persephonella sp. IF05-L8

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: University of Chicago


ncbi_organism_name: Clostridioides difficile 630

ncbi_submitter: Mahidol University


ncbi_organism_name: Pseudoalteromonas marina

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_isolate: BDGWM

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Sulfuricella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of three-weeks old elephant

ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: University of Queensland


ncbi_isolation_source: metagenome

ncbi_organism_name: Anaeromassilibacillus sp. An250

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: [Eubacterium] brachy


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Centre International de Recherche en Infectiologie


ncbi_isolate: SPRUCE 118

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 118

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Candidatus Amarolinea aalborgensis

ncbi_submitter: AALBORG UNIVERSITY

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Caldilineae;o__Caldilineales;f__Candidatus Amarolineaceae;g__Candidatus Amarolinea;s__Candidatus Amarolinea aalborgensis


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Alistipes onderdonkii subsp. vulgaris

ncbi_submitter: Kameda Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes onderdonkii;sb__Alistipes onderdonkii subsp. vulgaris


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Streptomyces sp. NPDC059981

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. SDT5-1

ncbi_submitter: institute of Microbiology, UCAS


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: California Department of Public Health


ncbi_country: United Kingdom

ncbi_isolation_source: heart valve

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: University of Exeter


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: China:Guangdong province

ncbi_isolation_source: intestine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Sagittula marina

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Alicyclobacillus macrosporangiidus

ncbi_submitter: University of British Columbia


ncbi_country: USA

ncbi_isolation_source: Missouri Soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Ohio State university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Spiribacter roseus

ncbi_submitter: University of Sevilla, Spain


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus sp. NCTC 11567

ncbi_submitter: SC


ncbi_country: South Africa

ncbi_isolation_source: Spinach

ncbi_submitter: University of Pretoria


ncbi_country: Netherlands: Ooijpolder

ncbi_isolation_source: biomass on anode of bioreactor after 21 days

ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Radboud University


ncbi_country: Taiwan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Shanghai Jiaotong University school of medicin


ncbi_country: France: Wimereux

ncbi_isolation_source: marine sponge

ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Universite Libre de Bruxelles


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: Spain: Santander

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: ITACYL


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sanguinis SK340

ncbi_submitter: Baylor College of Medicine


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0456R

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: mangrove sediments

ncbi_organism_name: Bacillus sp. FJAT-47783

ncbi_submitter: Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-47783


ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Lomonosov Moscow State University, Faculty of Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hyalangium minutum

ncbi_submitter: IMTECH-CSIR


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_12_FULL_41_17


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Candidatus Avelusimicrobium alvi

ncbi_submitter: University of Queensland


ncbi_country: Hong Kong

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Hong Kong


ncbi_country: India

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: China: Beijing

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1556 from squamous cell carcinomas patient MST017

ncbi_organism_name: Staphylococcus epidermidis


ncbi_organism_name: Bacillus sp. CH_48

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CH_48


ncbi_country: India: Marashtra

ncbi_isolation_source: Vaginal swab

ncbi_organism_name: Brucella melitensis

ncbi_submitter: National Dairy Development Board


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: USA

ncbi_organism_name: Escherichia coli APEC O2

ncbi_strain_identifiers: APEC O2

ncbi_submitter: Copenhagen University


ncbi_country: Mexico: Xico; Veracruz

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCGUVB23

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_assembly_name: Rumen uncultured genome RUG11454

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_assembly_name: Rumen uncultured genome RUG11016

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides avistercoris


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Australia

ncbi_isolation_source: clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridium sp. CAG:417

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium CG2_30_36_39


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Bacteroidales bacterium UBA2716

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2716


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: water

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shandong First Medical University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_assembly_name: Rumen uncultured genome RUG12966

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Science and Technology of Hanoi (USTH)


ncbi_country: France

ncbi_submitter: CHU de Bicetre


ncbi_organism_name: Streptomyces viridochromogenes DSM 40736

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium breve MCC 1605

ncbi_submitter: Food Science and Technology Institute, Morinaga Milk Industry Co., Ltd


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_organism_name: Anaerotignaceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Colorado

ncbi_isolation_source: fecal swab male ferret; 1.5 years old

ncbi_organism_name: Selenomonadales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Canada: Alberta

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_country: Brazil

ncbi_organism_name: Paraburkholderia youngii

ncbi_submitter: University of Pretoria


ncbi_country: France: Rennes

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_isolation_source: hide

ncbi_submitter: Kansas State University


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_assembly_name: Rumen uncultured genome RUG10547

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Arthrobacter parietis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Iran: Persian Gulf; Khark

ncbi_isolation_source: marine surface water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Tehran


ncbi_country: USA: VA

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rubritalea sp.

ncbi_submitter: Linnaeus University


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 328

ncbi_organism_name: Staphylococcus xylosus

ncbi_strain_identifiers: SNUC 966

ncbi_submitter: University of Calgary


ncbi_isolation_source: sourdough

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Companilactobacillus;s__Companilactobacillus paralimentarius;x__Companilactobacillus paralimentarius DSM 13238 = JCM 10415


ncbi_country: Thailand: Trang

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Municipal Center for Disease Control & Prevention


ncbi_isolation_source: cold seep

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: terrestrial

ncbi_organism_name: Achromobacter sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Rain

ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: Chicken Litter

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:i


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Pseudobutyrivibrio sp. UBA3655


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Mangrovibacter yixingensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Streptomyces sp. NPDC056943

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: CEITEC VETUNI


ncbi_isolate: SPRUCE 551

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 551

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: San Mateo; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_assembly_name: Rumen uncultured genome RUG11570

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_organism_name: Vibrio sp. 5S239

ncbi_submitter: University of Vienna


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudoalteromonas sp. UBA2102

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: host skin

ncbi_organism_name: Macrococcoides canis

ncbi_submitter: University of Bern


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SC


ncbi_country: Canada: Quebec

ncbi_isolation_source: dairy milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: McGill University


ncbi_country: USA: St. Louis; Missori

ncbi_submitter: Washington University


ncbi_isolation_source: fresh water

ncbi_organism_name: Dickeya undicola

ncbi_submitter: Sorbonne University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Columbia University Medical Center


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSUF


ncbi_organism_name: Bacteroides intestinalis


ncbi_country: Canada: Ontario

ncbi_isolation_source: yogurt

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: ProBiota Inc


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Tennessee

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Moscow

ncbi_isolation_source: laboratory reactor

ncbi_organism_name: Cupriavidus gilardii

ncbi_submitter: BIOFORTE-LAB


ncbi_assembly_name: freshwater MAG --- D4_bin-154

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Desulforapulum autotrophicum HRM2

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_assembly_name: Rumen uncultured genome RUG11287

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Argentina: Buenos Aires City

ncbi_isolation_source: blood sample

ncbi_submitter: California State University Fullerton


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolation_source: hands

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: USA: Virginia

ncbi_isolation_source: Incisional infection


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Enterobacter cloacae