ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: University of Wisconsin-Madison


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_assembly_level: Scaffold

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen University & Research


gtdb_representative: t

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: National Research Council Canada


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Reichenbachiella sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Cupriavidus respiraculi

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Stenotrophomonas sp.


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Lachnospiraceae bacterium HCP1S3_C5

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Sphingopyxis granuli

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Malaysia: Kelantan

ncbi_isolation_source: spleen

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Ministry of Higher Education Malaysia


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Borreliella garinii

ncbi_submitter: LMU Munich


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Alistipes cottocaccae

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Yale University


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Radboud University


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: CAU


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Microbispora hainanensis

ncbi_refseq_category: reference genome

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_strain_identifiers: Prague

ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis BCG


ncbi_isolation_source: offshore soil

ncbi_organism_name: Porticoccaceae bacterium LTM1

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources of China


ncbi_country: USA: Cambridge; MA

ncbi_organism_name: Campylobacter sp. MIT 19-121

ncbi_submitter: MIT


ncbi_country: USA: New York State

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Cornell University


ncbi_isolation_source: dining table of International Space Station

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_country: USA: California; Eel River; South Fork Eel River near Leggett

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV179

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_organism_name: Escherichia coli O91:NM str. 2009C-3745

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O91:NM;x__Escherichia coli O91:NM str. 2009C-3745


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Uterus

ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_country: South Korea

ncbi_isolation_source: fecal sample of a patient suffering from bloody diarrhea and abdominal pain

ncbi_organism_name: Escherichia coli NCCP15657

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: VHProbi V6156

ncbi_submitter: Nutrition &Health Technology Center


ncbi_organism_name: Cetobacterium somerae

ncbi_submitter: East China Normal University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: Saccharothrix xinjiangensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Klebsiella sp. 75581

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: Wageningen University and Research


ncbi_country: Japan

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: GUATP 151

ncbi_submitter: Applied Biological Science, Gifu University


ncbi_isolation_source: stool sample

ncbi_submitter: University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Viridibacillus arvi

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12124

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: J.Craig Venter Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: France

ncbi_isolation_source: female with post partum endometritis

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: INSERM


ncbi_organism_name: Escherichia coli B799

ncbi_submitter: Broad Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: gastric biopsies

ncbi_submitter: Oita University


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: feces dairy cow (Bos taurus)

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro;x__Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001697


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Zhejiang university


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bifidobacterium asteroides

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_country: China: Henan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from transplant house

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Noviherbaspirillum sp.

ncbi_submitter: Zhejiang University


gtdb_type_species_of_genus: t

ncbi_country: South Korea: sangju

ncbi_isolation_source: insect gut

ncbi_organism_name: Ephemeroptericola cinctiostellae

ncbi_submitter: NNIBR


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium CG2_30_39_44


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain: Mediterranean Sea

ncbi_isolation_source: Jellyfish

ncbi_organism_name: Alteromonas antoniana

ncbi_submitter: Mediterranean Institute for Advanced Studies (IMEDEA)


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_submitter: Yangzhou University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: uncultured Bacilli bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Antwerp


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: University of Galway

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Microcystis sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Actinophytocola sp.


ncbi_isolation_source: plant environment: swab; hose in processing room

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_assembly_level: Chromosome

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Mycobacterium kyorinense

ncbi_submitter: Kyorin University School of Medicine


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Gemmiger sp.

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_submitter: University of Trento


ncbi_country: Morocco: Fes-Boulemane

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Austria

ncbi_isolation_source: clinical

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Ruminococcus sp. AM29-10LB

ncbi_submitter: BGI


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: INRAE


ncbi_country: China: Dongying

ncbi_isolation_source: rhizosphere of white elm

ncbi_organism_name: Metabacillus dongyingensis

ncbi_submitter: Shandong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Brachybacterium sp. J144

ncbi_submitter: Shanxi Medical University


ncbi_country: Spain: Mallorca

ncbi_isolation_source: Vineyard

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: University of Balearic Islands


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Rhodobiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 7d patty soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Peking university


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolate: AOP1_C1_surf _bin _21

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP1_C1_surf _bin _21

ncbi_submitter: Genoscope


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_isolation_source: Colon

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Sweden

ncbi_submitter: Public Health Agency of Sweden


ncbi_organism_name: uncultured Alcaligenaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Final Effluent)

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China

ncbi_isolation_source: Urology Surgery

ncbi_organism_name: Escherichia coli

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Thiomonas arsenitoxydans

ncbi_submitter: Génétique Moléculaire, Génomique et Microbiologie UMR 7156 ULP - CNRS Université Louis Pasteur


ncbi_country: Spain

ncbi_isolation_source: broiler feces

ncbi_organism_name: Salmonella enterica subsp. arizonae

ncbi_submitter: Universidade de Santiago de Compostela


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory


ncbi_isolation_source: bovine feces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Ponticoccus sp. SC6-11

ncbi_submitter: Shantou University


ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Netherlands

ncbi_isolation_source: propagated starter culture used in cheese manufacturing

ncbi_submitter: Top Institute Food and Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;s__Leuconostoc mesenteroides;sb__Leuconostoc mesenteroides subsp. cremoris;x__Leuconostoc mesenteroides subsp. cremoris TIFN8


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: USA: Columbus; Ohio

ncbi_isolation_source: laboratory construct

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: OSU


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: Red leaf vegetables

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Salmonella Syst-OMICS


ncbi_organism_name: Candidatus Kuenenia sp.

ncbi_submitter: Joint Institute for Nuclear Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__unclassified Candidatus Kuenenia;s__Candidatus Kuenenia sp.


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11494

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: DC

ncbi_isolation_source: Wound

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Italy

ncbi_isolation_source: Pastries

ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_country: China: Yangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_assembly_name: freshwater MAG --- MJ130916B_bin-262

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_assembly_name: Salmonella enterica CVM N40935-SQ v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_country: China: Sichuan

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus sp. SSG-1

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Spongiisocius sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Candidatus Spongiisociales;f__Candidatus Spongiisociaceae;g__Candidatus Spongiisocius;x__unclassified Candidatus Spongiisocius;s__Candidatus Spongiisocius sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: France: Roscoff

ncbi_isolation_source: respiratory

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Institut Pasteur


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20121969


ncbi_organism_name: Shewanella aestuarii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_country: Italy: Piove di Sacco (PD)

ncbi_isolation_source: ruminal content

ncbi_organism_name: Clostridium botulinum D/C

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Thailand: Phitsanulok

ncbi_isolation_source: feces

ncbi_submitter: Cardiff University


ncbi_country: Australia: Tasmania

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Tasmanian Health Service


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Belgium

ncbi_isolation_source: rabbit meat

ncbi_organism_name: Clostridium sp. KO2

ncbi_submitter: KULeuven


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_assembly_name: Psychrobacter sp CMS30

ncbi_isolate: Psychrobacter sp. CMS30

ncbi_isolation_source: cyanobacterial mat

ncbi_organism_name: Psychrobacter sp. CMS30

ncbi_strain_identifiers: Psychrobacter sp. CMS30

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: CNRS


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Nitrospira sp. SB0662_bin_26

ncbi_submitter: University of Queensland


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Stutzerimonas nitrititolerans

ncbi_submitter: Banaras Hindu University


ncbi_organism_name: Paenibacillus xylanexedens

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Psychrobacter faecalis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Teagasc


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Planctomycetota bacterium


ncbi_organism_name: Bacillus siamensis

ncbi_submitter: Jilin Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus siamensis


ncbi_organism_name: Streptomyces sp. NPDC017254

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: AOP21_LA_D1 _bin _1

ncbi_organism_name: Cellulosimicrobium funkei

ncbi_strain_identifiers: AOP21_LA_D1 _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Allorhizobium sp. NPDC080224


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Brazil:Rio Grande do Sul

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_country: USA: Minnesota

ncbi_isolation_source: trachea

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Minnesota


ncbi_country: USA: MA; Boston

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium RIFCSPHIGHO2_12_FULL_38_11


ncbi_country: USA: San Leandro; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallis sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Portugal

ncbi_isolation_source: water from tailings from Panasqueira mine

ncbi_organism_name: Rhodanobacter sp. B2A1Ga4

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: PREPARE (Platform foR European Preparedness Against (Re-)Emerging Epidemics, EU-FP7, # 602525


ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium sp. SEMIA 4085

ncbi_strain_identifiers: SEMIA 4085

ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ahrensia sp.

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_isolation_source: marine

ncbi_organism_name: Afipia sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: pig farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Rwanda: Bugesera

ncbi_submitter: University of Rwanda

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Denmark: Ega

ncbi_isolation_source: activated sludge from Ega_18-Q3-R5-49

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Holophagales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Meishan

ncbi_isolation_source: fermented vegetable sample

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Sichuan Normal University


ncbi_country: USA: MidWest; broiler breeder farm 16

ncbi_isolation_source: Environmental bootie

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_assembly_name: freshwater MAG --- Loclat_bin-10221

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Gemmiger formicilis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Fibrobacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiotrichaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Manipal College of Pharmaceutical Sciences (MCOPS), MAHE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Luteococcus sp. H91

ncbi_submitter: China CDC


ncbi_country: USA

ncbi_organism_name: Shigella dysenteriae

ncbi_strain_identifiers: ATCC 9764

ncbi_submitter: CDC


ncbi_isolation_source: chlorinated drinking water; site 5

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: University of Glasgow


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Bifidobacterium animalis


ncbi_country: Ecuador: Chone

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Guayaquil


ncbi_country: New Zealand: Hikurangi Margin

ncbi_isolation_source: Glendhu Ridge methane seep

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: GNS Science


ncbi_country: China: Jiangsu

ncbi_isolation_source: bile

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: urine

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_organism_name: Bordetella trematum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: CA

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Queensland


ncbi_organism_name: Francisella tularensis

ncbi_submitter: SRCAMB


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Succinivibrionaceae bacterium UBA3769


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: Boston

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Pantoea brenneri

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Candidatus Brachybacter algidus

ncbi_submitter: Aalborg University


ncbi_country: USA: Alaska

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: United Kingdom

ncbi_isolation_source: Hairmyres Hospital

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Strathclyde


ncbi_assembly_name: IMG-taxon 2695420926 annotated assembly

ncbi_organism_name: Paracoccus solventivorans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Liaoning province

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China:Inner Mongolia

ncbi_isolation_source: Normal medium

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_country: Nigeria

ncbi_organism_name: Candidatus Pantoea deserta

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Acholeplasmataceae bacterium UBA5386

ncbi_submitter: University of Queensland


ncbi_organism_name: Actinomyces dentalis


ncbi_country: Russia: Novosibirsk

ncbi_isolation_source: chicken food

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality (FGBU VGNKI)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: China: Gansu

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Aggregatibacter aphrophilus

ncbi_submitter: SC


ncbi_organism_name: Brucella melitensis bv. 3 str. Ether

ncbi_strain_identifiers: Ether

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella melitensis;x__Brucella melitensis bv. 3;x__Brucella melitensis bv. 3 str. Ether


ncbi_organism_name: Sneathiella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA

ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Hubei

ncbi_isolation_source: intestines

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: QC

ncbi_submitter: State Key Laboratory of agricultural microbiology


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Aeromonas salmonicida subsp. salmonicida

ncbi_submitter: University of Liege


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima AS


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: EPFL


ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Bacillus sp. BR_10

ncbi_submitter: Banaras Hindu University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BR_10


ncbi_organism_name: Kingella oralis


ncbi_organism_name: Candidatus Planktophila dulcis

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis


ncbi_organism_name: Pararhodobacter oceanensis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Chlorobium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;f__Chlorobiaceae;x__Chlorobium/Pelodictyon group;g__Chlorobium;x__environmental samples;s__uncultured Chlorobium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D8_bin-0394

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: forest soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Runella sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_isolation_source: Human

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Infection, Veterinary & Ecological Sciences


ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudodesulfovibrio karagichevae

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F74023

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Aquamicrobium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: EPFL


ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-249


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Oklahoma

ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Deferribacteraceae bacterium

ncbi_submitter: The Ohio State University


ncbi_country: Russia: Moscow

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: Israel: Mediterranean Sea; Palmahim Disturbance brine pool

ncbi_isolation_source: brine pool

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus WAMC6055


ncbi_country: United Kingdom: Scotland; Edinburgh

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Roslin Institute


ncbi_country: Germany: Brandenburg

ncbi_isolation_source: bovine lung

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics Freie Universitaet Berlin


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA7218

ncbi_submitter: University of Queensland


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: Stockholm University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Phenylobacterium aquaticum

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Bacillus sp. 916

ncbi_submitter: Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 916


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium AM25-11LB

ncbi_submitter: BGI


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus sp. WP8

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. WP8


ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- F14_bin-0981

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Henan Cancer Hospital


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Stenotrophomonas nitritireducens


ncbi_organism_name: Pseudomonas sp. AB12(2023)

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: Russia: Kaluga

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_country: Thailand: Sukholthai Province

ncbi_isolation_source: rice leaf tissue

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Cornell University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: University of Karachi, Karachi, Pakistan


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: CO

ncbi_isolation_source: feces (Equus ferus caballus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3220-1

ncbi_submitter: Broad Institute


ncbi_isolation_source: air

ncbi_organism_name: Xenophilus aerolatus

ncbi_submitter: Shenzhen University


ncbi_country: USA: Pennsylvania;Pittsburgh

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Enterococcus faecalis TX1467

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycoplasmoides gallisepticum

ncbi_strain_identifiers: f99 lab strain

ncbi_submitter: USDA-ARS


ncbi_country: Singapore

ncbi_isolation_source: Freshwater reservoir

ncbi_organism_name: Planktothricoides sp. SR001

ncbi_submitter: Singapore-MIT Alliance for Research and Technology


ncbi_isolation_source: PCB-contaminated soil

ncbi_organism_name: Achromobacter mucicolens

ncbi_submitter: Zhejiang Normal University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia

ncbi_isolation_source: Corpse

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: fecal sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Candidatus Gallimonas merdae

ncbi_submitter: EMG

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdae


ncbi_country: Brazil: Buzios; Rio de Janeiro

ncbi_isolation_source: Millepora alcicornis

ncbi_organism_name: Brucella intermedia

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_country: USA: WA

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Washington


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: activated sludge in our lab

ncbi_organism_name: Rhodococcus sp. DMU1

ncbi_submitter: Dalian Maritime University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. DMU1


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guangdong

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Ohio

ncbi_isolation_source: feces

ncbi_submitter: USDA


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_country: Antarctica

ncbi_organism_name: Rhodanobacter sp. AS-Z3

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Microcystis panniformis WG22

ncbi_submitter: Bowling Green State University


ncbi_organism_name: Kribbella italica

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan

ncbi_isolation_source: petroleum zone soil

ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: University of Illinois


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Universite de Montreal


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidiferrobacterales bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Micromonospora sp. NPDC048842

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes inops


ncbi_organism_name: Staphylococcus gallinarum

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Salmonella sp. SKLX083119

ncbi_submitter: Zhejiang university


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prevotella sp.


ncbi_isolate: AOP35_03H_surf _bin _18

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP35_03H_surf _bin _18

ncbi_submitter: Genoscope


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: North West University


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Desulfuromonadaceae bacterium


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Hallerella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Aureispira sp.

ncbi_submitter: Ocean University of China


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_organism_name: Anaeromyxobacter sp. RBG_16_69_14

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: China: Luoyang River

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Marinoscillum sp. MHG1-6

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Xanthomonas cannabis

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Eubacterium limosum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Cleveland

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Cleveland Clinic


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Potomac River near Nanjemoy; MD

ncbi_isolation_source: tidal marsh

ncbi_organism_name: Chromobacterium phragmitis

ncbi_strain_identifiers: IIBBL 112-1

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces sp. NA02536

ncbi_submitter: Nanjing University


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HANYANG UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas oryzihabitans


ncbi_organism_name: Leptotrichiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Norway

ncbi_isolation_source: blood

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: China: SiChuan

ncbi_isolation_source: pig farm

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_country: India: Kolkata

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolate: Latilactobacillus sakei CIRM-BIA1912

ncbi_organism_name: Latilactobacillus sakei

ncbi_strain_identifiers: Latilactobacillus sakei CIRM-BIA1912

ncbi_submitter: INRAE


ncbi_isolation_source: sturter culture Biostart RP 100

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_isolation_source: patient environment

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_assembly_name: Rumen uncultured genome RUG13428

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: fresh water sediment

ncbi_organism_name: Burkholderiales bacterium GJ-E10

ncbi_submitter: Akita Prefectural University


ncbi_country: Turkey

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: USA: California

ncbi_isolation_source: Goat; fecal

ncbi_organism_name: Campylobacter vicugnae

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Slovenia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriales bacterium UBA4011

ncbi_submitter: University of Queensland


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Khon Kaen University


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B345;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_organism_name: Bacillus subtilis gtP20b

ncbi_submitter: University of Kiel, Germany and Zhejiang Universtiy, China.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;x__Bacillus subtilis gtP20b


ncbi_isolation_source: poultry meat

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Virchow


ncbi_country: Poland

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: South Korea: Daegu

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. B1-V-101

ncbi_submitter: Kyungpook National University School of Medicine


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfonatronovibrio sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Peru: Lima


ncbi_organism_name: Umezawaea sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: TO-A JPC

ncbi_submitter: Institute of Microbial Technology


ncbi_organism_name: Streptomyces sp. NPDC002722

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sphingomonas sp. BE270

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Peribacillus frigoritolerans


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium AM48-27BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Streptococcus danieliae

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Erysipelotrichaceae bacterium I46

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UCSF


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Shandong University


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bhargavaea massiliensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Streptomyces rubiginosohelvolus


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Agrobacterium sp. NPDC090283


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California, Davis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: University of Bern


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Tianjin

ncbi_isolation_source: Terrene aquaculture farm

ncbi_organism_name: Exiguobacterium sp. E.VS.2

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. E.VS.2


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_country: Zambia: Lusaka

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of Maryland College Park


ncbi_isolation_source: Catheter tip

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Shanghai

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 11P4

ncbi_submitter: Broad Institute


ncbi_isolation_source: Cecum

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Marinobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- Umea3p2_bin-0426

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Portugal

ncbi_organism_name: Streptococcus pneumoniae WL400

ncbi_submitter: Allegheny Research Institute


ncbi_country: Thailand: Trang

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Battelle Memorial Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Jordan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Belgium: Namur

ncbi_isolation_source: blood

ncbi_submitter: Cliniques Universitaires Saint-Luc


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Mobiluncus curtisii

ncbi_submitter: US Food and Drug Administration

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_country: United Kingdom: St James Park; London

ncbi_isolation_source: exudate

ncbi_organism_name: Winslowiella arboricola

ncbi_strain_identifiers: BAC 15a-03b

ncbi_submitter: University of the West of England


ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_country: China: Dalian

ncbi_isolation_source: sludge

ncbi_organism_name: Rhodococcus sp. DMU2021

ncbi_submitter: Dalian Maritime University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. DMU2021


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_country: China: Xiamen shore

ncbi_organism_name: Seonamhaeicola sp. ML3

ncbi_submitter: Third Institute of Oceanography, MNR


ncbi_isolation_source: Peritoneal Fluid

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: China: Jiangxi

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12052

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Netherlands: Olburgen

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; full scale (600m3) reactor for the removal of ammonium from wastewater from the potato processing industry

ncbi_organism_name: Chloroflexi bacterium OLB13

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium OLB13


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_country: Nigeria

ncbi_submitter: JCVI


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: University of Chicago


ncbi_country: China

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Treponema denticola

ncbi_strain_identifiers: OMZ 850

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Vibrio tarriae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Germany

ncbi_isolation_source: soil

ncbi_organism_name: Alicyclobacillus acidoterrestris

ncbi_submitter: iBET


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Curtobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: DC

ncbi_isolation_source: Urine catheter

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: China: Gansu

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Leucobacter chinensis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M85201

ncbi_submitter: Broad Institute


ncbi_country: France: Lille

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Cyanobacteria bacterium P01_E01_bin.45

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_E01_bin.45


ncbi_country: Malaysia

ncbi_isolation_source: Waterfall

ncbi_organism_name: Brevundimonas nasdae

ncbi_submitter: University of Malaya


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon aspirate

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of New Hampshire


ncbi_country: Viet Nam: Chu Se; Gia Lai

ncbi_isolation_source: black pepper plant root

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: ENDOBICA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Magnetospirillum gryphiswaldense

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia obeum

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: plant

ncbi_organism_name: Pseudomonas savastanoi

ncbi_submitter: University of Lille - ICV - UMRt BioEcoAgro

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pedobacter schmidteae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Nanchang

ncbi_isolation_source: Poyang Lake

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricutual University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Magnetovibrio sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: Ascites sample

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: Czech Republic: Pardubice region

ncbi_isolation_source: genital tract swabs

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: State Veterinary Institute Prague


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Freising

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium sp. WCA-178-WT-4B

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Rahnella sp. EDr1-10

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Washington University in St Louis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Coxiellaceae bacterium


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 220

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Limosilactobacillus fermentum


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Atopobiaceae bacterium Sow4_H2

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Mexico

ncbi_isolation_source: water

ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_strain_identifiers: kdesi

ncbi_submitter: CBG Instituto Politecnico Nacional


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Limoges

ncbi_isolation_source: Toilette

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universite Paris Sud


ncbi_country: Algeria

ncbi_isolation_source: milk

ncbi_organism_name: Lactococcus lactis subsp. lactis


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_country: Thailand: Bangkok; Bangplad market

ncbi_isolation_source: pork

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn university


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: caecum

ncbi_submitter: FDA/CFSAN


ncbi_country: United Kingdom

ncbi_organism_name: Brucella abortus 64/122

ncbi_submitter: Broad Institute


ncbi_country: Belgium

ncbi_organism_name: Actinobacillus equuli subsp. haemolyticus

ncbi_submitter: Universiteit Gent


ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: Nasophaynx


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Vescimonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Japan

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Armenia

ncbi_isolation_source: Urinary tract

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: university of west london


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Germany: Bavaria

ncbi_isolation_source: high oxygen packaged pork steak (+ 1 CD)

ncbi_organism_name: Dellaglioa algida

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Escherichia coli

ncbi_submitter: Northeast Forestry University


ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 216

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 4192

ncbi_submitter: University of Calgary


ncbi_organism_name: Borreliella valaisiana

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13778

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Mariniplasma sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Anaerobiospirillum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 1-182-04_S3_C1

ncbi_submitter: IGS


ncbi_country: China: Futian

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University College Dublin


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Daqing

ncbi_isolation_source: Oil reservoir production water

ncbi_organism_name: Dietzia sp. DQ12-76

ncbi_submitter: Peking University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Amesiibacteriota;s__Candidatus Amesbacteria bacterium RIFCSPLOWO2_02_FULL_48_11


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Antarctica

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudoalteromonas sp. SWN29

ncbi_submitter: Shandong University


ncbi_country: China: Zhejiang

ncbi_isolation_source: soil

ncbi_organism_name: Paracandidimonas lactea


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: EMG


ncbi_organism_name: Bradyrhizobium diazoefficiens USDA 110

ncbi_submitter: Kazusa


ncbi_country: India: Shivamogga Town; Karnataka

ncbi_isolation_source: Milk

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Madurai Kamaraj University


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Universidad de Zaragoza, Facultad de Veterinaria