ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Enterococcus gallinarum


ncbi_assembly_level: Contig

ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


gtdb_representative: t

ncbi_country: Japan: Kagoshima

ncbi_isolation_source: marine sediment adjacent to sperm whale carcasses collected by the unmanned ROV HyperDolphin

ncbi_organism_name: Amphritea balenae

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: JAMM 1525

ncbi_submitter: Anhui University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_assembly_level: Complete Genome

ncbi_country: India: Ahmednagar

ncbi_isolation_source: cyanobacterial mat collected from soil from a sugarcane field

ncbi_organism_name: Hydrogenophaga crocea

ncbi_submitter: National Centre for Cell Science


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: USDA ARS


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: BGI


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1246

ncbi_submitter: Broad Institute


ncbi_organism_name: Selenomonas artemidis

ncbi_submitter: EMG


ncbi_country: Czech Republic: Pribram

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter ursingii NIPH 706

ncbi_strain_identifiers: NIPH 706


ncbi_organism_name: Escherichia coli M12

ncbi_submitter: Department of Pediatrics, Washington University School of Medicine


ncbi_country: Brazil

ncbi_isolation_source: swine feces (Sus scrofa domesticus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Heibei; Baoding

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: New Zealand

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Massey University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: Canada: Lacombe

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fusobacterium varium

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Hydrogenibacillus sp. N12

ncbi_submitter: shanghai jiaotong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;f__Bacillales Family X. Incertae Sedis;g__Hydrogenibacillus;x__unclassified Hydrogenibacillus;s__Hydrogenibacillus sp. N12


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli


ncbi_country: Australia

ncbi_isolation_source: cattle feces

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: US Food and Drug Administration


ncbi_country: France

ncbi_isolation_source: feces from asymptomatic infant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_organism_name: Shigella sonnei


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Metabacillus idriensis

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: Russia: Stavropol Region

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Research Anti-Plague Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: China: Hubei

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Weissella confusa

ncbi_submitter: Shanghai Majorbio


ncbi_assembly_name: gabuh6207 v01

ncbi_country: USA

ncbi_isolation_source: bronchial wash

ncbi_organism_name: Acinetobacter baumannii UH6207

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AM67-5ACA

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: Teagasc


ncbi_country: France: Normandy

ncbi_isolation_source: sink trap

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Synechococcus elongatus PCC 6301

ncbi_submitter: Nagoya University, Japan


ncbi_country: Brazil: Minas Gerais; Contagem

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: Technical University of Denmark


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0145

ncbi_submitter: Broad Institute


gtdb_type_species_of_genus: t

ncbi_organism_name: Camelimonas lactis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Clone isolated from the evolution experiment described in Ketola et al. 2013 (doi: 10.1111/evo.12148)

ncbi_submitter: UNIVERSITY OF JYVASKYLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens ATCC 13880


ncbi_organism_name: Streptomyces sp. NPDC015238

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Cameroon: Ekona

ncbi_isolation_source: Cocoyam rhizosphere (red)

ncbi_organism_name: Pseudomonas peradeniyensis

ncbi_submitter: KU Leuven


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of South Africa


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0023


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Erwinia amylovora

ncbi_strain_identifiers: Ol.kora 4

ncbi_submitter: Institute of plant biology and biotechnology


ncbi_country: China: Chifeng

ncbi_isolation_source: tree leaf

ncbi_organism_name: Enterococcus sp. MMGLQ5-1

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_isolation_source: gluteal crease

ncbi_organism_name: Staphylococcus epidermidis NIHLM095

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Beijing University of Chemical Technology


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 74

ncbi_submitter: Ghent University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Variovorax sp. 160MFSha2.1

ncbi_submitter: University of the Pacific


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Neptunicoccus sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Alabama

ncbi_isolation_source: rhizosphere of the salt marsh grasses

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonas sp. IT-P260

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotella sp. UBA7115

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sudan

ncbi_organism_name: Vibrio cholerae V52

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Mesocricetibacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Netherlands: Ooijpolder

ncbi_isolation_source: biomass on anode of bioreactor after 21 days

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: IMG-taxon 2634166334 annotated assembly

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Streptomyces canus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Beijing

ncbi_isolation_source: patients

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_country: China: Shanxi

ncbi_isolation_source: urinary tract

ncbi_submitter: China Agricultural University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R136;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Kenya: Bungoma County

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium phaseoli

ncbi_submitter: Plant physiology


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Raoultella planticola

ncbi_submitter: SC


ncbi_country: Atlantic Ocean

ncbi_isolation_source: water

ncbi_organism_name: Pseudoalteromonas sp. CST4

ncbi_submitter: Michigan Technological University


ncbi_country: India: Barapani; Meghalaya

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: USA: Raleigh; NC

ncbi_isolation_source: Anaerobic fermented cucumber slurry spoilage

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: North Carolina State University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_country: Serbia: S. Palanka

ncbi_isolation_source: Field

ncbi_organism_name: Pseudomonas serbiensis

ncbi_strain_identifiers: KFB 138

ncbi_submitter: University of Florida


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Rhodanobacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Russia

ncbi_organism_name: Agromyces albus

ncbi_submitter: Chinese center for disease control and prevention


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: BGI-Shenzhen


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_submitter: Copenhagen University


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: University of Exeter


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Freshwater sample from upstream of wastewater treatment plant

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: The REHAB Consortium


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Henriciella sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA: Phoenix AZ

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Linnaeus University


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 monocultured in 4 g/ml imipenem treated Synthetic Cystic Fibrosis Media for 24 days

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_country: Portugal: Oeste region

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Nostoc sp. FACHB-152

ncbi_submitter: South China Normal University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: USA

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Nocardiopsis algeriensis

ncbi_submitter: Universidad de Salamanca


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: seawater

ncbi_organism_name: Rhodobacterales bacterium HKCCA1061

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Monash University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Escherichia coli


ncbi_country: USA: Washington DC

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_submitter: Ares Genetics


ncbi_country: China: Yunnan Province

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. CB02923

ncbi_submitter: The Scripps Research Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_country: United Kingdom

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C354_03B

ncbi_submitter: IGS


ncbi_assembly_name: Rumen uncultured genome RUG12289

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Spain

ncbi_isolation_source: laboratory

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Chr. Hansen


ncbi_assembly_level: Chromosome

ncbi_organism_name: Halomonas ventosae

ncbi_submitter: Forman Christian College


ncbi_country: USA: NY

ncbi_isolation_source: bovine cow uterus

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Liaoning

ncbi_isolation_source: physical

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Halothiobacillus neapolitanus

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Meijo University faculty of pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Rhizobium sp. BK068

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea:Seoul

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Sliced mixed vegetables

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Radboudumc


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nitrobacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Brevibacterium sp. K72

ncbi_submitter: University of the Punjab


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Candidatus Scatomorpha sp.

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;x__unclassified Candidatus Scatomorpha;s__Candidatus Scatomorpha sp.


ncbi_organism_name: Paraburkholderia hospita

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D1_bin-0882

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Netherlands: Olburgen

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; full scale (600m3) reactor for the removal of ammonium from wastewater from the potato processing industry

ncbi_organism_name: Bacteroidetes bacterium OLB11

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium OLB11


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolate: EcIncN

ncbi_strain_identifiers: EcIncN

ncbi_submitter: UNIVERSITY OF COPENHAGEN, SECTION OF MICROBIOLOGY


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Propionivibrio sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Germany

ncbi_organism_name: Chlamydia psittaci 03DC29

ncbi_submitter: University of Maryland School of Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Gulf of Mexico

ncbi_isolation_source: water sample from Deepwater horizon oil spill sea surface treated with treated with phenanthrene in a stable-isotope probing (SIP) experiment

ncbi_organism_name: Cycloclasticus sp. Phe_18

ncbi_submitter: The University of Texas at Austin


ncbi_country: South Africa: King Dinuzulu Hospital

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0125

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- MJ2_bin-087

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Hainan Island

ncbi_organism_name: Flagellimonas marinaquae

ncbi_strain_identifiers: SCSIO W0262

ncbi_submitter: South China Sea Institute of Oceanology,Chinese Academy of Sciences


ncbi_country: China: Hangzhou

ncbi_isolation_source: skin swab sample

ncbi_organism_name: Staphylococcus cohnii hu-01

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;x__Staphylococcus cohnii species complex;s__Staphylococcus cohnii;x__Staphylococcus cohnii hu-01


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Spain: Logrono; La Rioja

ncbi_isolation_source: Lab maintained population of field collected O. laevigatus

ncbi_organism_name: Serratia sp. OLLOLW30

ncbi_submitter: Swansea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. OLLOLW30


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG289

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Uppsala University


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WV

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 406

ncbi_organism_name: Staphylococcus agnetis

ncbi_strain_identifiers: SNUC 2265

ncbi_submitter: University of Calgary


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter radiodurans

ncbi_submitter: Seoul Women's University


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: adult feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aeroglaze A276 2

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Switzerland

ncbi_isolation_source: potato-based retail food product

ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Zurich


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_organism_name: Sulfitobacter pontiacus


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Nantong

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pusillimonas minor

ncbi_submitter: Yancheng Teachers University


ncbi_country: USA: Nebraska

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: New Zealand

ncbi_organism_name: Campylobacter sp. LR291e

ncbi_submitter: Massey University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1323

ncbi_submitter: Broad Institute


ncbi_country: Canada: Quebec; Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Pseudarthrobacter enclensis

ncbi_submitter: Sathyabama Institute of Science and Technology


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: artisanal dairy product

ncbi_submitter: Danone Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei;sb__Lacticaseibacillus paracasei subsp. paracasei;x__Lacticaseibacillus paracasei subsp. paracasei Lpp125


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China:Guangdong province;Yingde city

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: South China Agriculture University


ncbi_assembly_name: pBF

ncbi_isolation_source: marine sediments of the South China Sea

ncbi_organism_name: Cytobacillus firmus DS1

ncbi_submitter: HUAZHONG AGRICULTURAL UNIVERSITY


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China

ncbi_organism_name: Brucella suis S2-30

ncbi_submitter: Beijing Institute of Disease Control and Prevention


ncbi_country: China: Kunming

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Flavipsychrobacter stenotrophus

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares swab

ncbi_organism_name: Dietzia cinnamea

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Australia: Newcastle

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Leptotrichiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: Italy

ncbi_isolation_source: oropharyngeal swab

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: USA

ncbi_isolation_source: hide

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Competibacteraceae bacterium UBA2782

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Competibacteraceae bacterium UBA2782


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolate: Clostridium neonatale E18

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale E18

ncbi_submitter: universite paris cite


ncbi_country: Australia:Davies Reef

ncbi_isolation_source: sponge tissue; time zero; i.e. control

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Institute of Marine Science


ncbi_country: Pacific Ocean: the Okinawa trough

ncbi_isolation_source: Shrimp gill

ncbi_organism_name: Carideicomes alvinocaridis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA: Santa Fe; NM

ncbi_isolation_source: groin aspirate from a male

ncbi_submitter: US Army Edgewood Chemical Biological Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis;x__Yersinia pestis subsp. pestis bv. Orientalis;x__Yersinia pestis biovar Orientalis str. BA200901703


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_strain_identifiers: Erdman

ncbi_submitter: National Center for Global Health and Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis str. Erdman = ATCC 35801


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Oregon State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: kelp

ncbi_organism_name: Alteromonas sp. 5E99-2

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Jiulongibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas lini

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Minhang Hospital, Fudan University


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Streptomyces sp. NPDC101209

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Peribacillus sp. B-H-3

ncbi_submitter: Cold Regions Research and Engineering Laboratory


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Archangium violaceum

ncbi_submitter: University of Mississippi


ncbi_organism_name: Streptomyces longwoodensis


ncbi_organism_name: Streptomyces rimosus


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Zytex Biotech Pvt Ltd


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Sichuan University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Salmonella sp. SKLX101657

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Liard River

ncbi_isolation_source: Hot Spring Sediment

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Vibrio qinghaiensis

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: 2497PM;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_organism_name: Phyllobacterium myrsinacearum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Norway

ncbi_isolation_source: dairy

ncbi_organism_name: Leuconostoc mesenteroides subsp. cremoris

ncbi_submitter: Norwegian University of Life Sciences


ncbi_isolation_source: human feces metagenome


ncbi_isolation_source: soil

ncbi_organism_name: Xinfangfangia pollutisoli

ncbi_submitter: Zaozhuang University


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: Abattoir

ncbi_submitter: International Livestock Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: India: Kolkata

ncbi_isolation_source: blood sample from septicemic neonates

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: China

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Pseudomonas sp. URMO17WK12:I11

ncbi_submitter: BGI


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: India: Arabian Sea

ncbi_isolation_source: oil polluted seawater

ncbi_organism_name: Alloalcanivorax marinus

ncbi_submitter: National Center for Cell Sciences


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: Blood sample from neonates

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV2772

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2772


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: South Africa: Pretoria

ncbi_organism_name: Actinomadura rubteroloni

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: Paris Saclay University


ncbi_country: USA: North Carolina

ncbi_isolation_source: urine

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Minnesota

ncbi_organism_name: Pseudomonas coronafaciens pv. zizaniae

ncbi_strain_identifiers: ICMP 8921

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. zizaniae


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: water area where the ocean and a freshwater spring meet

ncbi_organism_name: Kordia jejudonensis

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA

ncbi_isolation_source: catheter

ncbi_organism_name: Acinetobacter baumannii UH12308


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Houston; TX

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instructor, Baylor College of Medicine


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Burkholderia ubonensis


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: Chile: Antofagasta

ncbi_isolation_source: water

ncbi_organism_name: Acidithiobacillus caldus

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: Germany: Jena

ncbi_isolation_source: rectal swab neonate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jena University Hospital


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;s__Candidatus Shapirobacteria bacterium CG_4_10_14_0_2_um_filter_40_12


ncbi_organism_name: uncultured Rhodococcus sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_submitter: PREPARE (Platform foR European Preparedness Against (Re-)Emerging Epidemics, EU-FP7, # 602525


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_organism_name: Streptomyces sp. NPDC005385

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Microbacterium sp. Root322

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Bacteriovoracaceae bacterium UBA7317

ncbi_submitter: University of Queensland


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Universidade Federal Rural de Pernambuco


ncbi_assembly_name: freshwater MAG --- LJ-3-65m_bin-0831

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Oscillochloris sp.

ncbi_submitter: BILS


ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Teagasc


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_organism_name: uncultured Pelagibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oleiharenicola sp. Vm1

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Paraburkholderia graminis

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Tepidisphaerales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_organism_name: uncultured Croceivirga sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Kasetsart University Chalermphrakiat Sakon Nakhon Province Campus


ncbi_organism_name: uncultured Anderseniella sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: United Kingdom: Gloucestershire

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in a breeding trial plot

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: Shandong

ncbi_isolation_source: sputum

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Weifang People's Hospital


ncbi_country: Pacific Ocean

ncbi_organism_name: Roseibium aggregatum

ncbi_submitter: Ocean University of China


ncbi_country: Australia: Melbourne

ncbi_isolation_source: wound infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_country: Bangladesh: Mathbaria

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Dethiobacter sp.


ncbi_country: Turkey: Samsun

ncbi_organism_name: Streptomyces sp. RK76

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_country: Portugal


ncbi_isolation_source: soil

ncbi_organism_name: Sporolactobacillus terrae

ncbi_submitter: NODAI Culture Collection Center, Tokyo University of Agriculture


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_strain_identifiers: NGH Pa19

ncbi_submitter: King Abdullah University Science and Technology


ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Sydney


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: France: Normandy

ncbi_isolation_source: ocular

ncbi_submitter: LABEO


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Waterloo


ncbi_country: South Africa: Kruger National Park; Pafuri

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Pretoria


ncbi_organism_name: Bordetella genomosp. 9

ncbi_submitter: University of Michigan


ncbi_organism_name: Desulfolucanica intricata

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Flavobacteriales bacterium TMED123

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Dendrolimus pini


ncbi_country: Canada: Shelburne County; NS

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA: reef near Looe Key

ncbi_organism_name: Pseudoalteromonas sp. PS5

ncbi_submitter: University of California San Diego


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_submitter: Toho University


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H2581

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S003

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S003


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: Clemson University


ncbi_country: South Korea: Sangju

ncbi_isolation_source: Makgeolli (Korean traditional alcoholic beverage)

ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bile

ncbi_organism_name: Staphylococcus aureus M0973


ncbi_organism_name: Salmonella sp. NW1209

ncbi_submitter: Sichuan University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyushu University Graduate school of medical sciences, department of Bacteriology


ncbi_country: China: Pearl River Estuary

ncbi_isolation_source: sediment

ncbi_organism_name: Paenimyroides aestuarii

ncbi_strain_identifiers: SCSIO 72103

ncbi_submitter: south china sea institute of oceanology


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Germany

ncbi_isolation_source: healthy cow feces

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Succiniclasticum ruminis

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-449-J16

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Cameroon

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Chitinophagales bacterium


ncbi_country: USA: Gulf of Mexico

ncbi_isolation_source: water sample from Deepwater horizon oil spill plume (depth 1200m) treated with hexadecane in a stable-isotope probing (SIP) experiment

ncbi_organism_name: Marinobacter sp. Hex_13

ncbi_submitter: The University of Texas at Austin


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Canada

ncbi_isolation_source: stool

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Francisella salimarina

ncbi_submitter: Guangdong Provincial Hospital of Traditional Chinese Medicine


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient36 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_country: Brazil: Espirito Santo

ncbi_isolation_source: sewer water

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: FIOCRUZ


ncbi_country: Italy

ncbi_isolation_source: food

ncbi_organism_name: Serratia rubidaea

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_organism_name: Proteus sp. G4463

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4463


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Gungdong

ncbi_isolation_source: blood

ncbi_submitter: South China Agricultural University


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Ukraine: eastern Crimea

ncbi_isolation_source: bubbling pool in the central crater-like structure of an active mud volcano

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: SponGES


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 202

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 1713

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Candidatus Bathyarchaeia archaeon

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Archaea;x__Thermoproteati;p__Candidatus Bathyarchaeota;c__Candidatus Bathyarchaeia;x__unclassified Candidatus Bathyarchaeia;s__Candidatus Bathyarchaeia archaeon


ncbi_submitter: Umea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Phyllobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces luteireticuli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Marinomonas hwangdonensis

ncbi_submitter: Linnaeus University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Brevundimonas sp.


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: sponge tissue

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. s56021

ncbi_submitter: Zhejiang university


ncbi_submitter: national health research institutes


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Lacipirellulaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Aquirufa ecclesiirivi

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 403

ncbi_submitter: SC


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Tsukamurella pulmonis

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE143

ncbi_submitter: Broad Institute


ncbi_assembly_name: CLC Genomic Workbench

ncbi_country: USA: TN

ncbi_isolation_source: Ground beef

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis;x__Salmonella enterica subsp. enterica serovar Infantis str. CVM N35518


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroides cellulosilyticus


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Lacinutrix sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Egypt

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: USUHS


ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: CEBITEC


ncbi_country: USA: Tennessee

ncbi_isolation_source: RECTAL

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: Spain

ncbi_isolation_source: Intubated patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CAU Kiel


ncbi_country: Thailand: Trang

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Klebsiella sp. CN_Kp090

ncbi_submitter: Max Rubner-Institut


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Liaoning province

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: human skin

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd.


ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus amylovorus


ncbi_country: China: Yangzhou

ncbi_isolation_source: sampling staff sole swab

ncbi_submitter: Yangzhou University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3701

ncbi_submitter: University of Queensland


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Xenorhabdus indica

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Texas

ncbi_isolation_source: respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Brazil

ncbi_strain_identifiers: LMG 695

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. dieffenbachiae;x__Xanthomonas phaseoli pv. dieffenbachiae LMG 695

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_isolation_source: Distal colon


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Legionella genomosp. 1

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: National University of Singapore


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: CNGB


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Phocaeicola vulgatus CL09T03C04

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Porphyromonas gingivalis

ncbi_strain_identifiers: Ando

ncbi_submitter: Lab. of Plant Genomics and Genetics, Department of Plant Genome Research, Kazusa DNA Research Institute


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock bioreactor

ncbi_organism_name: Sphingomonadales bacterium 63-6

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University College Cork


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_isolation_source: lamb meat

ncbi_organism_name: Clostridium sp. CM028

ncbi_submitter: University of Zurich


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_country: India: North Guwahati Town; Guwahati; Assam

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Hong Kong

ncbi_isolation_source: rectal swab

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp A-16

ncbi_strain_identifiers: Hp A-16

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: gastric biopsies; stomach mucosa

ncbi_organism_name: Limosilactobacillus gastricus

ncbi_submitter: Korea University


ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Arthrobacter psychrolactophilus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: Northeast Forestry University


ncbi_country: USA: NJ

ncbi_isolation_source: Beef Cows

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59457F

ncbi_submitter: FDA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Kenya: Nairobi

ncbi_isolation_source: vaginal mucus

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: University of Saskatchewan


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Legionellales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_submitter: University of Sheffield


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Aerococcus urinae

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_submitter: Yangzhou University


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Streptomyces sp. NBC_01602

ncbi_submitter: Technical University of Denmark


ncbi_country: India: Chandigarh

ncbi_isolation_source: Female Nares

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: USA: St. Charles; Illinois

ncbi_isolation_source: sump pump pipe

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: chicken fecal material

ncbi_organism_name: Campylobacter coli

ncbi_submitter: China CDC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolate: SPRUCE 687

ncbi_organism_name: Brevinematales bacterium

ncbi_strain_identifiers: SPRUCE 687

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Agromyces flavus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Looe Key National Marine Sanctuary; Florida

ncbi_isolation_source: coral mucus

ncbi_organism_name: Verrucomicrobia bacterium UBA6053

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA6053


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_organism_name: uncultured Isosphaeraceae bacterium


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: cecal contents

ncbi_organism_name: Acetatifactor sp.


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Singapore

ncbi_isolation_source: environment

ncbi_organism_name: Aeromonas sp. Prich7-2

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus thiooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG14221

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: Dubosiella newyorkensis


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Abyssicoccus albus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Universidad de Antioquia


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Japan:Kagoshima; Kagoshima Bay

ncbi_organism_name: Methylocaldum marinum

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Japan


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium RIFOXYC12_FULL_41_11


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ecuador

ncbi_isolation_source: blood

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: UAEM


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Candidatus Sulfobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Candidatus Sulfobium;x__unclassified Candidatus Sulfobium;s__Candidatus Sulfobium sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea: Joengeup

ncbi_organism_name: Blautia faecicola

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: Colon


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P12 CL A21

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UK Health Security Agency


ncbi_organism_name: Azospirillum sp. BE72

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0448

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolate: DclaSym

ncbi_isolation_source: Beetle Malpighian tubules

ncbi_organism_name: Enterobacteriaceae endosymbiont of Donacia clavipes

ncbi_strain_identifiers: DclaSym

ncbi_submitter: Johannes Gutenberg University Mainz


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Synergistales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Rhizobium sp. SJZ105


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Kazakhstan: West-Kazakhstan

ncbi_isolation_source: tissue

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: burned soil

ncbi_organism_name: Sphingomonas bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Citrobacter youngae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: IMG-taxon 2634166275 annotated assembly

ncbi_organism_name: Amycolatopsis keratiniphila

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Granulicella sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_name: freshwater MAG --- YR4_bin-0710

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Arcobacter sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: freshwater MAG --- A4_bin-512

ncbi_isolation_source: pond


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Spirochaetota bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;s__Candidatus Shapirobacteria bacterium CG03_land_8_20_14_0_80_35_14


ncbi_organism_name: uncultured Selenomonas sp.


ncbi_organism_name: Bifidobacterium catenulatum


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rothia mucilaginosa