ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Brazil: Braganca

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_level: Complete Genome

ncbi_isolate: PANNVG

ncbi_organism_name: Pantoea sp. Nvir

ncbi_strain_identifiers: PANNVG

ncbi_submitter: Radboud University Nijmegen


gtdb_representative: t

ncbi_organism_name: uncultured Clostridium sp.


ncbi_assembly_level: Scaffold

ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_assembly_level: Chromosome

ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Greece: Athens

ncbi_isolation_source: stool samples

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Linnaeus University


ncbi_organism_name: Anaerobiospirillum succiniciproducens

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonadaceae bacterium UBA1517

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Waterloo; Ontario

ncbi_isolate: LW2 Bin 16_7

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_strain_identifiers: LW2 Bin 16_7

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Korea: Seoul

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yonsei University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: China: Beijing

ncbi_submitter: National institutes of Food and Drug Control


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Enterococcus raffinosus ATCC 49464

ncbi_submitter: Broad Institute


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: Bioreactor mimicking brackish/coastal conditions

ncbi_submitter: radboud university nijmegen

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__Candidatus Methylomirabilis oxygeniifera

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__Candidatus Methylomirabilis oxygeniifera


ncbi_organism_name: Streptomyces sp. NPDC051740

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Tanzania

ncbi_isolation_source: Nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef carcass

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_organism_name: Candidatus Pelagibacter sp. HIMB123

ncbi_submitter: Hawaii Institute of Marine Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. HIMB123


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Flavobacterium sp. GT3P67

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Cryobacterium sp.

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_country: Italy: Panarea

ncbi_isolation_source: red biofilm

ncbi_organism_name: Caulifigura coniformis

ncbi_refseq_category: reference genome

ncbi_submitter: Radboud Universiteit Nijmegen

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Ornithinimicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella sp. s52363

ncbi_submitter: Zhejiang university


ncbi_submitter: The University of Melbourne


ncbi_submitter: KU Leuven


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_submitter: Aalborg University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: MN

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Minnesota


ncbi_country: USA: New Jersey

ncbi_isolation_source: potato

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: University of Maine


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine metagenome


ncbi_assembly_name: freshwater MAG --- Umea_bin-05362

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium bifidum


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Australia

ncbi_isolation_source: necrotic enteritis field case

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: RMIT


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Mycobacterium attenuatum

ncbi_submitter: CHUV-UNIL


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV079

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolate: TRIP AH-1

ncbi_isolation_source: Asphalt lake (Pitch Lake; Trinidad and Tobago)

ncbi_organism_name: uncultured Desulfobacterium sp.

ncbi_strain_identifiers: TRIP AH-1

ncbi_submitter: Genoscope CEA


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pseudomonas brenneri

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China:Zhuaxixiulong township; Tianzhu county; Wuwei city.

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Gansu Agricultural University


ncbi_organism_name: Mycoplasma sp. CAG:472

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: INRAE


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium CG2_30_43_20


ncbi_isolation_source: caecum

ncbi_organism_name: Coriobacteriaceae bacterium CHKCI002

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Pseudomonas fluorescens


ncbi_isolation_source: not applicabable

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology, Nagoya University, Graduated School of Medicine


ncbi_country: China: Beijing

ncbi_isolation_source: Pyometra

ncbi_submitter: China Agricultural University


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: Peadiatric - patient file

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: INRA


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Microbacterium sp.


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_isolation_source: not available: to be reported later

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Connecticut Graf Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Megamonas sp.

ncbi_submitter: EMG


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Clostridium] innocuum


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_strain_identifiers: Fiocruz LV3213

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV3213


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Kingston University


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Streptococcus parasanguinis


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Escherichia coli


ncbi_country: Chile: Estacion las Cruces

ncbi_isolation_source: Shore seawater

ncbi_organism_name: Vibrio sp. CL3

ncbi_submitter: University of Cambridge


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_strain_identifiers: Xcv DC 96-4

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Blastococcus goldschmidtiae

ncbi_submitter: Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_country: Uruguay

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: Human feces

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: TU Delft


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Texas

ncbi_isolation_source: Oral

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: The University of Texas at Dallas


ncbi_country: South Africa

ncbi_isolation_source: Maize rhizosphere

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: North-West University, South Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Turkey

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Mycobacterium tuberculosis TB_RSA118

ncbi_submitter: Broad Institute


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Comoros

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Paenibacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Shewanella sp. ZOR0012

ncbi_submitter: University of Maryland School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Sphingorhabdus sp. EL138

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Serratia nevei

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Australia

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: United Kingdom:England

ncbi_isolation_source: skin infection

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: Brazil: Uberaba

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: Centre International de Recherche en Infectiologie


ncbi_organism_name: Nitratireductor sp.


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: DOE JGI


ncbi_country: Algeria

ncbi_submitter: IHU


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-2075

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: WRAIR-Africa (Kenya)


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Phocaeicola coprocola


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: USDA-ARS


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Leuconostoc mesenteroides subsp. jonggajibkimchii

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Paenibacillus residui

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Pseudomonas putida KT2440

ncbi_submitter: shandongdaxue


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: uncultured Candidatus Nemicrothrix sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__environmental samples;s__uncultured Candidatus Nemicrothrix sp.


ncbi_country: Chile: Yungay; Atacama Desert

ncbi_isolation_source: Yungay Desert Soil Below Boulder

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Duisburg-Essen


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: Canada: Alberta

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-11352

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sheffield


ncbi_country: China: Hunan; Chenzhou

ncbi_isolation_source: Coal heap drainage

ncbi_organism_name: Acidithiobacillus thiooxidans

ncbi_strain_identifiers: DMC

ncbi_submitter: Central South University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: Rhode Island

ncbi_isolate: J

ncbi_isolation_source: laboratory strain

ncbi_strain_identifiers: D344RRF x C68;J

ncbi_submitter: brown University/Rhode Island Hospital


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Agroscope


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Georgia

ncbi_isolation_source: nasopharyngeal swab of healthy child between ages five months and five years old

ncbi_organism_name: Streptococcus pneumoniae NP112

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Faeces


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB07-170

ncbi_submitter: Broad Institute


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis ERV68

ncbi_submitter: Washington University


ncbi_country: United Kingdom

ncbi_organism_name: Bacillus thuringiensis serovar kurstaki

ncbi_strain_identifiers: BGSC 4D4

ncbi_submitter: University of Bath

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar kurstaki


ncbi_country: South Korea: Jeju

ncbi_isolation_source: forest soil

ncbi_organism_name: Chryseobacterium gotjawalense

ncbi_submitter: Jeju National University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Boston

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Oceanospirillales bacterium


ncbi_organism_name: Francisella tularensis subsp. novicida

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: Czech Republic

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_isolation_source: rhizosphere soil culture M52

ncbi_organism_name: Isoptericola sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Syntrophus aciditrophicus SB

ncbi_strain_identifiers: SB

ncbi_submitter: Integrated Genomics


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: ETT secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: Nigeria

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. Q-M60


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia intermedia

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Peking University People 's Hospital


ncbi_country: Italy

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium leguminosarum;x__Rhizobium leguminosarum bv. viciae;x__Rhizobium leguminosarum bv. viciae UPM1131


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- Umea2_bin-3102

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Mexico: Morelos

ncbi_isolation_source: hemolymph and gut

ncbi_submitter: CCG-UNAM


ncbi_organism_name: uncultured Trichococcus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Prochlorococcus marinus CUG1435

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Streptomyces galbus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Ctena orbiculata


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_isolation_source: anal smear

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: Masaryk University


ncbi_country: Colombia: Bogota

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Norway: Bergen

ncbi_isolation_source: Blood culture

ncbi_organism_name: Eikenella corrodens

ncbi_submitter: Haukeland University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Texas

ncbi_isolation_source: guttural pouch lavage

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Lebanon

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_organism_name: Cupriavidus alkaliphilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hangzhou

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: EPFL


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: USA: Alachua County; Florida

ncbi_isolation_source: feces

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University of Florida


ncbi_organism_name: Bacteroides intestinalis


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-355-M18

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Xanthomonas campestris pv. thespesiae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: Gastroenterology

ncbi_submitter: Guangzhou Medical University


ncbi_isolation_source: the First Quanzhou Hospital; Quanzhou; Fujian; China

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: Huaqiao University


ncbi_isolation_source: starter bakery

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CIRM-BIA 1108

ncbi_submitter: Brigham Young University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Elusimicrobiota bacterium


ncbi_organism_name: uncultured Conexibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sam Houston State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_submitter: University of Wyoming


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Fimbriimonadaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_submitter: National Institutes of Health


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D8_bin-0234

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Ruminococcus bromii


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Wuhan

ncbi_isolation_source: river water

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: The First Affiliated Hospital of Medical School


ncbi_submitter: China Agricultural University


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: India: Manipur

ncbi_isolation_source: Fermented rice beverage

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Bioresources and Sustainable Development


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Staphylococcus aureus H50403

ncbi_submitter: Broad Institute


ncbi_country: Sweden

ncbi_isolate: A Kope5603

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: uncultured Agathobaculum sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Streptomyces sp. NPDC012450

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The University Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG14289

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Pectobacterium brasiliense PBR1692

ncbi_submitter: University of Wisconsin


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Alistipes sp. HGB5

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Streptomyces sp. NBC_01788

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Beckwithiibacteriota;s__Candidatus Beckwithbacteria bacterium CG_4_10_14_0_2_um_filter_47_25


ncbi_organism_name: Deferribacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_country: Germany

ncbi_isolation_source: gut

ncbi_organism_name: Morganella morganii

ncbi_submitter: University of Hohenheim


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: Guangxi University


ncbi_country: China: Jilin

ncbi_organism_name: Commensalibacter sp. M0357

ncbi_submitter: China Agricultural University


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Loyola University Chicago


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas sputi

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: zhejiang university


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_assembly_name: freshwater MAG --- Ki3-D3_bin-1000

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: BILS


ncbi_country: Mexico: Oaxaca

ncbi_isolation_source: coralloid root

ncbi_organism_name: Pseudomonas sp. 91RF

ncbi_submitter: Langebio Cinvestav Irapuato


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Wuhan University


ncbi_organism_name: Flavobacterium gossypii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_assembly_name: IMG-taxon 2617270904 annotated assembly

ncbi_organism_name: Deinococcus reticulitermitis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Hong Kong

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: The HKUST


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: The James Hutton Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_country: Japan

ncbi_isolation_source: human feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: Acapulco; Guerrero

ncbi_isolation_source: Bronchial fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: Germany: Freising

ncbi_isolation_source: lab-scale biogas fermenter fed with maize silage

ncbi_organism_name: Ruminiclostridium herbifermentans

ncbi_submitter: Technical university of Munich


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: Peadiatric - nurses table

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: USA: University of Georgia in Athens; GA

ncbi_isolation_source: single cell amplified by WGA-X; hindgut

ncbi_organism_name: Parabacteroides sp. OttesenSCG-928-G21

ncbi_submitter: University of Georgia


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Klebsiella sp. NA21

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Salmonella sp. NW576

ncbi_submitter: Sichuan University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany: Hainich National Park; Hainich Critical Zone Exploratory

ncbi_isolation_source: groundwater from well H41 incubated with 12C bicarbonate for 70 days

ncbi_organism_name: Roseateles sp.

ncbi_submitter: Friedrich Schiller University Jena


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA:Bakersfield; California

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: USDA


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 209

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 3896

ncbi_submitter: University of Calgary


ncbi_assembly_name: IMG-taxon 2599185359 annotated assembly

ncbi_organism_name: Sphingomonas sp. NFR04

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Israel

ncbi_isolation_source: seawater

ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: Hebrew University of Jerusalem


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: drainage

ncbi_organism_name: Klebsiella aerogenes UCI 28

ncbi_strain_identifiers: UCI 28

ncbi_submitter: Broad Institute


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Queensland


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Jyvaskyla


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas sp. DWRC1-1

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Netherlands

ncbi_isolation_source: disinfectant-free drinking water; site 5

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Glasgow


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: National Research Council Canada


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_country: Indonesia: Bogor

ncbi_isolation_source: beef from cattle Peranakan Ongole

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: IIA

ncbi_submitter: Universiti Malaysia Sabah


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oslo


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. MDB1-18-1

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Dactylosporangium matsuzakiense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad de Guadalajara


ncbi_isolate: GKJPGKMO

ncbi_organism_name: Candidatus Stammera capleta

ncbi_strain_identifiers: GKJPGKMO

ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: University of Toronto


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Taiwan: Hospital

ncbi_isolation_source: plasma

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Chung Cheng University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Australia

ncbi_isolation_source: Grenache

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Moraxella equi

ncbi_submitter: Center for Bioinformatics


ncbi_country: Germany: Jena

ncbi_isolation_source: Lab strain

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: CHI: Chlamydien-Wirtszell-Interaktion


ncbi_organism_name: Butyricicoccus sp. TM115-253

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: IMG-taxon 2639762568 annotated assembly

ncbi_organism_name: Bacillus nitratireducens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Amycolatopsis sp. NPDC004079

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 419

ncbi_submitter: SC


ncbi_organism_name: Moellerella wisconsensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: uncultured Armatimonadia bacterium


ncbi_country: China: Hunan

ncbi_submitter: China agricultural university


ncbi_organism_name: Cardiobacterium hominis

ncbi_submitter: EMG


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: China: experimental field of South China Agricultural University

ncbi_isolation_source: Rice root soil in experimental field of South China Agricultural University

ncbi_organism_name: Acinetobacter lactucae

ncbi_submitter: South China Argriculture university


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Bacillus cereus group sp. Sample61

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Sample61


ncbi_organism_name: Prescottella equi

ncbi_submitter: College of Resources and Environmental science


ncbi_country: France: Saint Laurent du Maroni

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CHRU Besancon


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: CS1GBYEI2 assembly 1

ncbi_isolation_source: Corroded Artesian bore well

ncbi_organism_name: Lacrimispora celerecrescens

ncbi_submitter: Griffith University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: Korea Food Research Institute


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Streptomyces sp. NPDC059909

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Shigella sp. FJ201004

ncbi_submitter: Fujian Medical University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Paralachnospira sangeri

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Paralachnospira;s__Candidatus Paralachnospira sangeri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Paralachnospira;s__Candidatus Paralachnospira sangeri


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: Universidade Estadual do Norte Fluminense


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Fudan University Huashan Hospital


ncbi_country: India

ncbi_organism_name: Enterobacter cancerogenus

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Lacrimispora sp.

ncbi_submitter: Facultad de Quimica, Universidad de la Republica


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Leptolinea sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: IN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-1655

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nodularia sp.

ncbi_submitter: BILS


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Opitutales bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter cloacae

ncbi_strain_identifiers: EBU

ncbi_submitter: Alex Ekwueme Federal University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Trichococcus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Erwinia persicina

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Phytoplasma pyri

ncbi_submitter: Instituto de Patologia Vegetal CIAP-INTA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrX (Apple proliferation group);s__Candidatus Phytoplasma pyri


ncbi_organism_name: Dethiobacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Prevotella histicola

ncbi_submitter: Hospital Sirio-Libanes


ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Fusicatenibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Ataturk Universitesi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Deinococcales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: Streptomyces hawaiiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Braganca

ncbi_submitter: LNCC


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Algeria: Djelfa .

ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: ECOLE NORMALE SUPERIEURE DE KOUBA-ALGER


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: Oregon State University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Korea

ncbi_organism_name: Weissella coleopterorum

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Kordia sp.

ncbi_submitter: SCOPE


ncbi_organism_name: Eubacterium maltosivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: Disk sedimentation

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_country: South Africa: North-West

ncbi_isolation_source: drinking water from distribution plants

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: North-West University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Germany: Rostock

ncbi_isolation_source: rhizosphere of Brassica napus

ncbi_organism_name: Serratia plymuthica

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Staphylococcus sp. GDY8P52P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- VK_bin-2584

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_country: Poland

ncbi_isolation_source: artisanal fermented pickle

ncbi_organism_name: Pediococcus ethanolidurans

ncbi_strain_identifiers: CIRM-BIA 2167

ncbi_submitter: Brigham Young University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sulfuritortus calidifontis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: sediment

ncbi_organism_name: Parvularcula sp.

ncbi_submitter: University of Queensland


ncbi_country: Sudan

ncbi_isolation_source: Sepsis

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: King Abdulaziz University


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium sp. E2989

ncbi_submitter: JCVI


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: food

ncbi_organism_name: Aeromonas salmonicida


ncbi_country: China: Nanchang

ncbi_isolation_source: industrial pipeline

ncbi_organism_name: Geobacillus sp. YHL

ncbi_strain_identifiers: YHL

ncbi_submitter: Jiangxi Normal University


ncbi_organism_name: Rothia mucilaginosa


ncbi_organism_name: Pseudomonas silesiensis

ncbi_submitter: Cornell University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Canada: Alberta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_isolation_source: marine water

ncbi_organism_name: K189A clade bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__K189A clade;s__K189A clade bacterium


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Intra-abdominal infection

ncbi_organism_name: Proteus terrae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: Qinghai

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Prevotella amnii

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Polaribacter sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: USA: CA

ncbi_isolation_source: rhinocero feces

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1835R

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: SD

ncbi_isolation_source: porcine ileum


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Shenzhen

ncbi_organism_name: Lachnospira eligens

ncbi_submitter: BGI


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 139

ncbi_submitter: Oregon State University


ncbi_organism_name: Pseudomonas sp. Bout1

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_organism_name: Buttiauxella gaviniae

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: FONDAZIONE EDMUND MACH


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Anabaena subtropica FACHB-260

ncbi_submitter: South China Normal University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_submitter: Ark Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin;x__Salmonella enterica subsp. enterica serovar Dublin str. SD3246


ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Gyeongsang National University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium GW2011_GWC2_37_73


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: ARRIAM


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: Mozambique

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium: Ghent

ncbi_isolation_source: plant

ncbi_organism_name: Paenibacillus foliorum

ncbi_submitter: Ghent University


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Germany: Cologne

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Cologne


ncbi_isolation_source: rectum cervidae (Cervus canadensis)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Mesorhizobium sp.

ncbi_submitter: EMG


ncbi_organism_name: Brucella melitensis

ncbi_submitter: University of Pretoria


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterococcus hirae


ncbi_country: Thailand

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Pantoea dispersa

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Caulobacter sp.

ncbi_submitter: Iowa State University


ncbi_organism_name: Lactiplantibacillus modestisalitolerans

ncbi_strain_identifiers: TBRC 4576

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Hohai University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Cadiz


ncbi_organism_name: Methylocella sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_organism_name: Bacillus mycoides


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Firmicutes bacterium ADurb.Bin193

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium ADurb.Bin193


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Comamonas kerstersii

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Culture Collection

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: urine

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Slackia sp.


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shandong University


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: China: Taizhou

ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia sp. R2

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: plant metagenome

ncbi_organism_name: uncultured Arcobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Nitrosococcus oceani C-27

ncbi_submitter: Nitrification Network


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-193

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: France: Nimes

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: A-DAP-RS

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Japan:Shiga; Otsu; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Wound Thigh Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_submitter: Robert Koch Institute


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Greece

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: Heizberg

ncbi_submitter: Central Veterinary Institute part of Wageningen UR


ncbi_country: Tunisia: Sousse

ncbi_isolation_source: clinical

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Federal University of Bahia


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow intestine

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Shanghai Children's Hospital


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: USFDA


ncbi_country: Belgium

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_country: France

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: Streptomyces xinghaiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Shewanella putrefaciens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: France: Normandy

ncbi_isolation_source: stools

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: meat

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_assembly_name: CLC assembled contigs

ncbi_isolation_source: sea water

ncbi_organism_name: Prochlorococcus marinus

ncbi_strain_identifiers: SCGC AAA795-I06

ncbi_submitter: UNIVERSITY OF CALIFORNIA - SAN DIEGO


ncbi_country: Canada: Nunavut

ncbi_isolation_source: Arctic cryosol methane SIP

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: McGill University


ncbi_isolation_source: feces

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Mongolia

ncbi_isolation_source: soil

ncbi_organism_name: Paenarthrobacter sp. MSM-2-10-13

ncbi_submitter: Kyonggi University


ncbi_country: China:South Sea

ncbi_isolation_source: water

ncbi_organism_name: Streptomyces sp. 891-h

ncbi_submitter: Zhejiang University of Technology


ncbi_assembly_name: freshwater MAG --- Ja_bin-2197

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: [Clostridium] nexile

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Microbacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Queensland; Cairns; Yorkeys Knob

ncbi_isolation_source: ovitrap placed in suburban area

ncbi_organism_name: Wolbachia endosymbiont of Aedes aegypti

ncbi_submitter: The University of Melbourne


ncbi_country: Ireland: Carlingford Lough

ncbi_isolation_source: haemolymph

ncbi_organism_name: Vibrio sp. S/42/10

ncbi_submitter: Cefas


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: nanjing university


ncbi_organism_name: Allorhizobium sp.

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Streptomyces sp. NPDC048411

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Microcoleus anatoxicus PTRS3

ncbi_submitter: Bend Genetics


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Teagasc Food Research Centre, Ireland


ncbi_organism_name: Photorhabdus luminescens NBAII H75HRPL105


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Germany

ncbi_organism_name: Lelliottia aquatilis

ncbi_submitter: TZW: DVGW-Technologiezentrum Wasser


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bdellovibrio sp. ZAP7

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: seawater

ncbi_organism_name: Marinomonas atlantica

ncbi_submitter: Ocean university of China


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: HUN-REN Biological Research Centre, Szeged


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0194R

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. CK188

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: Troups Creek Wetland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_isolation_source: human skin

ncbi_organism_name: Mycolicibacterium mucogenicum

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Nocardia sp. BMG111209

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_organism_name: Helcococcus sueciensis DSM 17243


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycoplasmatales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: UIUC


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paenibacillus sp. NPDC058177

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Roseibium sp.


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Pacific Ocean: Eastern North Pacific; ODP site 1244

ncbi_isolation_source: methane hydrate marine sediment

ncbi_organism_name: bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: France

ncbi_organism_name: Pseudomonas coronafaciens pv. porri

ncbi_strain_identifiers: ICMP 8961

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. porri


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus LPIH6011

ncbi_submitter: Broad Institute


ncbi_isolation_source: Bloodstream

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute