ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Centers for Disease Control, Taiwan


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_organism_name: Streptococcus timonensis

ncbi_refseq_category: reference genome

ncbi_submitter: URMITE

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: China Agricultural University


ncbi_assembly_level: Scaffold

ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_country: USA: MA

ncbi_isolation_source: nostril

ncbi_organism_name: Dolosigranulum pigrum

ncbi_submitter: Forsyth Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: China: Foshan City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Proteus terrae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: France: Tours

ncbi_isolation_source: infection

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Ancrocorticia sp.


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Institute of Medicinal Biotechnology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus AMMC6072

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 44298_5

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: PA

ncbi_isolation_source: avian pericardial sac (Meleagris sp.)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Phycicoccus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Switzerland

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_submitter: Yuan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: USA: San Leandro; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Pelotomaculum sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Saccharofermentanales bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingomonas trueperi

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: uncultured Eggerthella sp.


ncbi_organism_name: Methylophaga nitratireducenticrescens

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France: Bourgogne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Mexico

ncbi_isolation_source: river water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Singapore

ncbi_isolation_source: Field

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Aeromicrobium flavum

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Gordonia rubripertincta

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India: Haryana

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: International Livestock Research Institute


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Kangiella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Biomedical Food Research, NIHS


ncbi_isolation_source: Fecal samples

ncbi_submitter: INSERM UMR 1137


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_organism_name: Delftia sp. WSY_14

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Candidatus Alistipes merdipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas sp. FYR_2


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Coraliomargaritaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Vibrio sp. Vb2657

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Florida


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: Rumen uncultured genome RUG11933

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Breoghania sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: China

ncbi_isolation_source: tissue from heart transplant recipient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University


ncbi_country: USA: Alachua

ncbi_isolation_source: feces


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Jiangsu province

ncbi_isolation_source: mouse intestine 0group

ncbi_organism_name: Phocaeicola coprophilus

ncbi_submitter: University of Queensland


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Proteiniphilum sp. UBA5323


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_organism_name: Staphylococcus aureus VET0305R

ncbi_submitter: Broad Institute


ncbi_organism_name: Allosphingosinicella sp.


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Thailand

ncbi_isolation_source: saline paddy soils

ncbi_organism_name: Rhodopseudomonas palustris

ncbi_submitter: Faculty of Science, Prince of Songkla University


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Switzerland

ncbi_isolation_source: Cheese starter culture

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_isolate: Psychrobacter faecalis Iso-46

ncbi_isolation_source: pigeon stool

ncbi_organism_name: Psychrobacter faecalis

ncbi_strain_identifiers: Psychrobacter faecalis Iso-46

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 119

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 2004

ncbi_submitter: University of Calgary


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA3594


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ110830A_bin-510

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Shenzhen

ncbi_isolation_source: food

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pakistan

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Finland

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_country: USA: Umatilla County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1C9

ncbi_submitter: Oregon State University


ncbi_country: Lebanon: Makassed General Hospital

ncbi_isolation_source: cell culture

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_country: USA

ncbi_isolation_source: Corneal Scraping

ncbi_organism_name: Pseudomonas aeruginosa BL20

ncbi_submitter: Broad Institute


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: sputum

ncbi_submitter: University of Michigan


ncbi_country: New Caledonia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira adleri

ncbi_submitter: Institut Pasteur Montevideo


ncbi_country: Kenya: Nairobi

ncbi_submitter: Makerere University


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavicella sp.

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Mahidol University


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus GD2010-131


ncbi_country: China: Shandong

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Paenirhodobacter huangdaonensis

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: fecal sample

ncbi_organism_name: Companilactobacillus farciminis

ncbi_submitter: University of Zurich


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. NSJ-48

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: China: Anhui

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Japan: Tsuruoka; Yamagata

ncbi_isolation_source: human feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Keio University


ncbi_country: China: Jiangsu Provice

ncbi_isolation_source: soil sample

ncbi_organism_name: Corynebacterium glutamicum

ncbi_strain_identifiers: SYPA 5-5

ncbi_submitter: Jiangnan University


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV2790

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2790


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_assembly_name: freshwater MAG --- Ja_bin-2787

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: The Ohio State University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Shewanella livingstonensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Bioprox


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Deinococcus lacus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Mycolicibacterium psychrotolerans

ncbi_submitter: The University of Sydney


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Pau University


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus aureus VET0383R

ncbi_submitter: Broad Institute


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: bladder epithelial biopsy from 30-year-old female patient with recurrent urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG13225

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Kandleria vitulina

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas marginalis

ncbi_submitter: University of British Columbia


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_country: Germany

ncbi_isolation_source: Ropy Bread

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_strain_identifiers: Fad 99

ncbi_submitter: University of Alberta

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: China

ncbi_isolation_source: water

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Capital Institute of Pediatrics,Beijing, China


ncbi_organism_name: uncultured Paludibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Acidocella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus sp. FZMF

ncbi_strain_identifiers: FZMF

ncbi_submitter: Fujian Agriculture And Forestry University


ncbi_country: China: Shenzhen; Longgang

ncbi_isolation_source: stool

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Shanghai

ncbi_isolation_source: Chicken wings

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Rahnella inusitata


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Gallimonas faecium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas faecium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas faecium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Phycisphaerales bacterium


ncbi_organism_name: Paenibacillus motobuensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Mosul


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_submitter: The First Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: ANIWHA


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: USDA ARS


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Ignavibacteria bacterium GWC2_56_12

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium GWC2_56_12


gtdb_type_species_of_genus: t

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: Antarctica: Prydz Bay

ncbi_isolation_source: marine sediment

ncbi_organism_name: Arenibacter catalasegens

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Mediterranea sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Phillip Island; Victoria

ncbi_isolation_source: koala scats

ncbi_organism_name: Cedecea colo

ncbi_strain_identifiers: ZA

ncbi_submitter: RMIT University


ncbi_isolation_source: infected tissues

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Sorbonne University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: rumen

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolate: labscale reactor_MAG26

ncbi_organism_name: Azonexus sp.

ncbi_strain_identifiers: labscale reactor_MAG26

ncbi_submitter: European Union Horizon 2020 research and innovation programme


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Italy

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_organism_name: Arthrobacter nitrophenolicus

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: China: Hebei

ncbi_isolation_source: cattle manure

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Hebei Agricultural University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Azospira sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Jiangsu

ncbi_isolation_source: patient with infection

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Agathobacter rectalis


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_country: USA: International Space Station

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_organism_name: Vibrio sp. F13

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Sheffield


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Basel


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F66300

ncbi_submitter: Broad Institute


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp. UBA4707

ncbi_submitter: University of Queensland


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_assembly_name: Assembly 1

ncbi_country: Viet Nam

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni 30286

ncbi_submitter: University of Exeter


ncbi_country: Australia: Brisbane

ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Ghana

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Luebeck


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Yersinia mollaretii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: Candidatus Nucleicultrix amoebiphila

ncbi_submitter: Northwestern University


ncbi_country: USA: California

ncbi_isolation_source: River water

ncbi_organism_name: Campylobacter lari RM16701

ncbi_submitter: USDA, ARS


ncbi_country: China: Guangdong

ncbi_isolation_source: fresh flowers

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Schekmaniibacteriota;s__Candidatus Schekmanbacteria bacterium GWA2_38_11


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Paenarthrobacter sp. YJN-D

ncbi_strain_identifiers: YJN-D

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_submitter: Pennsylvania State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Karamoja


ncbi_organism_name: uncultured Acidimicrobiia bacterium


ncbi_organism_name: Dialister succinatiphilus


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: the seqafrica consortium


ncbi_isolate: SPRUCE 212

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 212

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Monoglobus pectinilyticus


ncbi_isolate: AOP15_C2_surf _bin _2

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: AOP15_C2_surf _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: Candidatus Acutalibacter stercoravium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 20cm depth; 4 days after first rain event (27mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__unclassified Gemmatimonadota;s__Gemmatimonadetes bacterium 13_1_20CM_2_70_10


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Brazil

ncbi_isolation_source: Frozen chicken carcass

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_submitter: Henan Agricultural University


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: France: Lille

ncbi_isolation_source: trachea


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: France

ncbi_isolation_source: flower

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: INRAE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Michigan

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: United States Department of Agriculture


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: Serbia: Futog

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG13

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: University of Konstanz


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Liaocheng university


ncbi_country: Ireland

ncbi_isolation_source: skim milk powder (medium heat)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Teagasc Agriculture and Food Development Authority


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_organism_name: Acinetobacter nectaris CIP 110549

ncbi_submitter: Broad Institute


ncbi_country: India

ncbi_submitter: Jawaharlal Institute of Postgraduate Medical Education and Research


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 2; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp. oral taxon 158

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;x__unclassified Veillonella;s__Veillonella sp. oral taxon 158


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces sp. NPDC000659

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Candidatus Muiribacterium halophilum

ncbi_taxonomy: d__Bacteria;p__Candidatus Muiribacteriota;c__Candidatus Muiribacteriia;o__;f__Candidatus Muiribacteriaceae;g__Candidatus Muiribacterium;s__Candidatus Muiribacterium halophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Muiribacteriota;c__Candidatus Muiribacteriia;x__Candidatus Muiribacteriales;f__Candidatus Muiribacteriaceae;g__Candidatus Muiribacterium;s__Candidatus Muiribacterium halophilum


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Syntrophotalea sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: not provided

ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Cuba: Calimete

ncbi_isolation_source: Rectal Swab

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Methylomirabilota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__environmental samples;s__uncultured Methylomirabilota bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Citrobacter braakii

ncbi_strain_identifiers: LK_344 Iso 7

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 co-cultured with S. maltophilia 4 g/ml treated Synthetic Cystic Fibrosis Media for 24 days

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Colombia

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institute


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a composite leachate cistern at an active municipal landfill in Southern Ontario

ncbi_organism_name: Desulfuromonas thiophila


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Guangdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Treponema sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Clostridium sp. CAG:343

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Caldisericota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__environmental samples;s__uncultured Caldisericota bacterium


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Stanford Healthcare


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_organism_name: Paenarthrobacter sp. AT5

ncbi_submitter: nanjing agricultural university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: vagina

ncbi_organism_name: Prevotella bivia DNF00650

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: Argentina

ncbi_organism_name: Rickettsia bellii str. RML An4

ncbi_strain_identifiers: RML An4

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__belli group;s__Rickettsia bellii;x__Rickettsia bellii str. RML An4


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospira pectinoschiza

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_strain_identifiers: ATCC BAA-2469

ncbi_submitter: Justus Liebig University Giessen


ncbi_organism_name: Ktedonobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa

ncbi_isolation_source: Spinach

ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Pretoria


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Nonomuraea sp. NPDC049758

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptomyces sp. NPDC093250


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_strain_identifiers: ATCC 4352

ncbi_submitter: Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Borrelia recurrentis

ncbi_strain_identifiers: PBeK

ncbi_submitter: Michigan State University


ncbi_assembly_name: freshwater MAG --- Umea_bin-07902

ncbi_isolation_source: lake water

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Aphodovivens avicola

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__;f__;g__Candidatus Aphodovivens;s__Candidatus Aphodovivens avicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;x__Coriobacteriia incertae sedis;g__Candidatus Aphodovivens;s__Candidatus Aphodovivens avicola


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Christensenellales bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: University of South Africa


ncbi_submitter: Laboratoire de Microbiologie. University hospital Sahloul


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China

ncbi_isolation_source: NP swab

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: USA: Alachua; FL

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_submitter: SC


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Comamonas composti DSM 21721

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: Plant

ncbi_organism_name: Chryseobacterium tagetis

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus WMCA6123

ncbi_submitter: Broad Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus SJUD6111


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Netherlands

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_isolation_source: gut (Ileum)

ncbi_organism_name: Dysgonomonas sp. Marseille-Q5470

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus pseudoporcinus


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Jonesiaceae bacterium iMX7


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Oxford


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Queen Mary University of London


ncbi_isolation_source: Abdominal Abscess

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: shallow marine sediment

ncbi_organism_name: uncultured Psychroserpens sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S18

ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: University of Calgary


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: water

ncbi_organism_name: Ferrovaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail chicken skin

ncbi_submitter: United States Department of Agriculture


ncbi_country: USA: Milwaukee; Wisconsin

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Wisconsin-Milwaukee


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: India: Nagpur

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_country: Greece

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: WA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: Shenzhen Research Institute, The Chinese University of Hong Kong


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Japan: Wakayama Prefecture

ncbi_isolate: Japanese badger JB63

ncbi_isolation_source: blood sample

ncbi_organism_name: Bartonella sp. JB63

ncbi_strain_identifiers: Japanese badger JB63;JB63

ncbi_submitter: University of Basel


ncbi_isolation_source: sediment in cold seep

ncbi_organism_name: Guyparkeria halophila

ncbi_submitter: chinese academy of sciences


ncbi_organism_name: Puia sp.

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Sphingobacteriia bacterium


ncbi_isolation_source: mutagenic treatment soil isolate from South America

ncbi_organism_name: Streptomyces capuensis

ncbi_submitter: University of Illinois


ncbi_organism_name: Streptomyces roseoviridis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Jilin

ncbi_isolation_source: Tibetan kefir

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Beijing University of Agriculture


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood from patient with pneumonia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Italy: Cesena

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_isolation_source: marine marsh sediment

ncbi_organism_name: Solidesulfovibrio fructosivorans JJ]

ncbi_strain_identifiers: JJ

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus vallismortis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: intestinal content

ncbi_organism_name: Agathobacter sp.

ncbi_submitter: ChinaCDC


ncbi_country: USA: Texas

ncbi_submitter: Monash University


ncbi_organism_name: Prevotella sp. UBA641

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: China: Chongming

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Pectobacterium polaris

ncbi_submitter: Hebei Agricultural University


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_country: Burkina Faso

ncbi_isolation_source: skin wound

ncbi_submitter: IHU mediterranee infection


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Actinotignum timonense

ncbi_submitter: Loyola University Chicago


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Melbourne

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: plant metagenome

ncbi_organism_name: uncultured Aurantimicrobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom:Bristol

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Washington; DC

ncbi_isolation_source: Stool of child with non-specific diarrhea

ncbi_submitter: University of Applied Sciences of Western Switzerland hepia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Salmonella sp. NW618

ncbi_submitter: Sichuan University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Limiplasma pullistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma pullistercoris


ncbi_organism_name: bacterium


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Catenibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Microbacter sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Cetobacterium sp.


ncbi_organism_name: Paenibacillus sp. 1A_MP2

ncbi_submitter: Indian Institute of Science Education and Research Kolkata


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bilifractor sp. LCP19S3_H10

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Iowa State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Bartonella sp. CL46QHWL

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Micromonospora sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Candidatus Puniceispirillales bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__Candidatus Puniceispirillales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Hospital Sirio-Libanes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Yunnan

ncbi_isolation_source: vegetable

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Kunming University of Science and Technology


ncbi_country: China: Shenzhen

ncbi_organism_name: Lachnospiraceae bacterium AM25-39

ncbi_submitter: BGI


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Furfurilactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: LanzaTech Inc


ncbi_isolate: SPRUCE 577

ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_strain_identifiers: SPRUCE 577

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Michigan


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Sweden: Orebro

ncbi_isolation_source: orthopedic joint implant

ncbi_organism_name: Finegoldia magna

ncbi_submitter: Aarhus University


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: University of Illinois Medical Center

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: China: Keruke town; Delingha City; Qinghai Province

ncbi_isolation_source: Human waste

ncbi_organism_name: Alistipes sp. dk3620

ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Shanxi Province

ncbi_isolation_source: Shanxi aged vinegar fermentation process

ncbi_organism_name: Bacillus sp. TYF-LIM-B05

ncbi_submitter: Taiyuan University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. TYF-LIM-B05


ncbi_organism_name: Rhizobium ruizarguesonis


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_submitter: Stanford Healthcare


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: rectal swab

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China: Xuzhou

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus cereus Rock3-42

ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus Rock3-42


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Dorea sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: Italy

ncbi_isolation_source: oropharyngeal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_isolation_source: stool

ncbi_organism_name: Shigella flexneri CCH060

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Georgia

ncbi_isolation_source: Caffeine Lake Lanier Mesocosm I

ncbi_organism_name: Pelomonas sp. KK5

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Spain: Madrid

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Atopobium sp. UBA1382

ncbi_submitter: University of Queensland


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: China: Qinghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Switzerland: Cazis

ncbi_isolation_source: river surface water

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_country: USA: MI

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: US Food and Drug Administration


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Mameliella alba

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SurvCARE


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry Farm

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Finland

ncbi_organism_name: Dickeya solani D s0432-1

ncbi_submitter: Institute for integrative biology of the cell


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: zooplankton

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Padova


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Rural Development Administration National Institute Agricultural


ncbi_country: China: Jiangsu

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Hydrogenophilaceae bacterium

ncbi_submitter: Friedrich Schiller University Jena


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: USA: ME

ncbi_isolation_source: egg (Gallus gallus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: China

ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB04

ncbi_submitter: Soochow University


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-PR

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacterium sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Streptomyces sp. NBC_00647

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Erythrobacter sp. A30-3

ncbi_submitter: shandong university


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Alcanivorax nanhaiticus

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Eggerthellales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Spain: Canary Islands

ncbi_organism_name: Mycoplasma todarodis

ncbi_submitter: IMEDEA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Argentina

ncbi_organism_name: Escherichia coli

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Caulobacteraceae bacterium


ncbi_submitter: Agricultural University of Athens


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: IHMA


ncbi_organism_name: Salmonella sp. NW16

ncbi_submitter: Sichuan University


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_strain_identifiers: Alfie & Buddy E76

ncbi_submitter: Shandong Liaohao Biotechnology Co., Ltd

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolate: AOP34_AQ2_surf _bin _27

ncbi_organism_name: Agrococcus casei

ncbi_strain_identifiers: AOP34_AQ2_surf _bin _27

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: faecal

ncbi_submitter: SC


ncbi_submitter: Tongji University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Sangeribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Manitoba

ncbi_organism_name: Escherichia coli K-12

ncbi_submitter: University of Manitoba


ncbi_country: Sweden

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: EMG


ncbi_organism_name: Vibrio tasmaniensis

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Sydney

ncbi_isolation_source: rectal swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: i3 Institute


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_submitter: Inha University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Ontario

ncbi_isolation_source: manure from farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: The University of Maine


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:London

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprobacillus sp.


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Acinetobacter sp. TGL-Y2

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Geneva University Hospitals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Hawaii

ncbi_organism_name: Streptomyces rubrogriseus

ncbi_submitter: University of Wisconsin Madiso


ncbi_organism_name: Gordonia rhizosphera NBRC 16068

ncbi_submitter: National Institute of Technology and Evaluation (NITE)


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Georgia


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Sedimenticola;x__unclassified Sedimenticola;s__Candidatus Sedimenticola sp. (ex Thyasira tokunagai)


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of Queensland


ncbi_country: Italy: Lazio

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Streptomyces sp. NPDC017405

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: California

ncbi_isolation_source: Plant tissue

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: UC Berkeley


ncbi_country: China: Yan an

ncbi_isolation_source: crude oil contaminated soil

ncbi_organism_name: Neorhizobium petrolearium

ncbi_submitter: Yan'an university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Hanam-si

ncbi_organism_name: Hanamia caeni

ncbi_submitter: Hankyong National University


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: Bangladesh

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Kitasatospora aureofaciens


ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Faecalibacillus faecis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Enterococcus sp. GC33

ncbi_submitter: Northwest A & F University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Canada: Big Island; ON

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_submitter: Al-Hussein Bin Talal University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Streptomyces sp. NPDC000404

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: DOE JGI


ncbi_country: United Kingdom: Middlesex

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Yersinia pseudotuberculosis


ncbi_isolation_source: Laboratory activated sludge

ncbi_organism_name: Acinetobacter sp. PK01

ncbi_submitter: xi'an university of architecture and technology


ncbi_organism_name: Acinetobacter baumannii 24860_6

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Ocean university of China


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Veillonella magna

ncbi_submitter: EMG


ncbi_isolation_source: Clinical: Human (Homo sapiens)

ncbi_organism_name: Escherichia coli O111:NM

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Romania: Targu Mures

ncbi_isolation_source: fecal screen

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Oxford


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB03-144

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Xanthobacter autotrophicus

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Streptomyces sp. NPDC008343

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Agathobaculum sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Segatella hominis


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Streptomyces sp. BBFR109

ncbi_submitter: University of Freiburg


ncbi_organism_name: Thiohalospira sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Rothia dentocariosa


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Teagasc Food Research Centre, Ireland


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 50 year old woman who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_assembly_name: freshwater MAG --- Loc090402-8-9m_bin-1059

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: soil metagenome

ncbi_organism_name: uncultured Rhodanobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Guangzhou

ncbi_isolation_source: ICU patient rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Birmingham


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Gaiellaceae bacterium


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_submitter: University of Liege


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Upper gallery; floor level; 50-70 cm from the wall

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Arcobacter sp.

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: India

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Jawaharlal Institute of Postgraduate Medical Education and Research


ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_organism_name: Acidaminococcus massiliensis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_organism_name: uncultured Brachyspira sp.


ncbi_country: Denmark: Viborg

ncbi_isolation_source: activated sludge from Vibo_18-Q3-R45-57

ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_isolate: metabat2_pooled_hifiasm.1833 MAG

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_strain_identifiers: metabat2_pooled_hifiasm.1833 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_assembly_name: freshwater MAG --- C5-5_bin-287

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Geobacillus sp. G4

ncbi_submitter: Universidade Federal do Tocantins


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Nocardioides bizhenqiangii

ncbi_submitter: China CDC


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: University of Calgary


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: China

ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_country: China: Shenzhen

ncbi_isolation_source: vomit of a patient

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: Colombia: Choco

ncbi_isolation_source: Continental Water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Blautia sp.


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Saganbacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;x__Candidatus Saganbacteria;s__Candidatus Saganbacteria bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Wall biofilm

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Radboud University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Janthinobacterium sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Sphingobium cloacae NBRC 102517

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Staphylococcus aureus VET0054R

ncbi_submitter: Broad Institute


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG11220

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_submitter: UNIVERSITE LAVAL