ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: marine college, shandong university


gtdb_representative: f

ncbi_isolation_source: Urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-368

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chitinophagales bacterium

ncbi_strain_identifiers: new MAG-368

ncbi_submitter: Micoorganism


ncbi_assembly_level: Scaffold

ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Italy: Pozzomaggiore

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_assembly_name: IMG-taxon 2687453811 annotated assembly

ncbi_organism_name: Sphingopyxis sp. YR583

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Italy

ncbi_isolation_source: swine meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: Paenibacillus apiarius

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: Rumen uncultured genome RUG14657

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Germany

ncbi_isolation_source: marine sediment from the North Sea

ncbi_organism_name: Alcanivorax jadensis T9

ncbi_refseq_category: reference genome

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)

ncbi_type_material_designation: assembly from type material


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Parvularcula marina

ncbi_submitter: Xiamen University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Streptococcus sp. HMSC071D03

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Chile

ncbi_isolation_source: pork

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Bifidobacterium ruminantium DSM 6489

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Clostridium beijerinckii


ncbi_country: USA: KS

ncbi_isolation_source: Heifers

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N59559F


ncbi_organism_name: Pseudolysinimonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: Outdoors environment of a veterinary clinic

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Bern


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Streptococcus orisratti

ncbi_submitter: EMG


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Cepheid


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Paracoccus pantotrophus J40


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Thailand: Ubon

ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_level: Chromosome

ncbi_country: Argentina

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: cirad

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Symbiobacterium terraclitae


ncbi_country: Lebanon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: lebanese american university


ncbi_organism_name: Aeromicrobium panaciterrae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Screening

ncbi_organism_name: Escherichia coli

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Syntrophales bacterium


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Micromonospora sp. NPDC005652

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Poland: Warszawa

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Medicines Institute


ncbi_country: Russia: Moscow

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Woeseiaceae bacterium


ncbi_isolation_source: Ileo-caecum


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: Venezuela

ncbi_organism_name: Staphylococcus aureus DAR5896

ncbi_submitter: Broad Institute


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_country: China:Yellow Sea

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: East China University of Science and Technology


ncbi_country: USA: Chapel Hill; North Carolina

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_country: South Africa: Prince Cyril Zulu CDC

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0078


ncbi_submitter: Faculty of Public Health


ncbi_isolation_source: soil metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Malaysia

ncbi_organism_name: Leptospira barantonii

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2785200

ncbi_submitter: IGS


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Mahidol University


ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Seawater

ncbi_organism_name: Planktomarina temperata

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Kallayi river

ncbi_isolation_source: mangroves

ncbi_organism_name: Streptomyces sp. KAU_LT

ncbi_submitter: Kerala Agricultural University


ncbi_country: Cambodia

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Clostridium] scindens


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Salmonella sp. CQ24WZ0645SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Pilosibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterobacter mori

ncbi_submitter: Bicetre hospital


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 2; 20cm depth; 6 days after first rain event (27mm)

ncbi_organism_name: Acidobacteria bacterium 13_2_20CM_57_17

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Cardiobacteriales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter chengduensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_isolation_source: Vaginal secretion

ncbi_organism_name: Mobiluncus mulieris

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Bangladesh

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Denmark: Loegten Strand

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Electrothrix gigas

ncbi_submitter: Aarhus University


ncbi_country: Australia

ncbi_organism_name: Burkholderia pseudomallei MSHR511

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_assembly_name: freshwater MAG --- AM-2014-D3_bin-366

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Southern Atlantic

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;s__Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_12_FULL_47_45


ncbi_isolate: wuenschmanii

ncbi_organism_name: Candidatus Mycobacterium wuenschmannii

ncbi_strain_identifiers: wuenschmanii

ncbi_submitter: USDA Animal Plant Health Inspection Service-National Veterinary Services Laboratories - DBPL


ncbi_country: Switzerland

ncbi_isolation_source: bovine mastitis

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Argentina: Buenos Aires

ncbi_isolate: Sediminibacterium sp. C3

ncbi_isolation_source: sludge

ncbi_organism_name: Sediminibacterium sp. C3

ncbi_strain_identifiers: Sediminibacterium sp. C3;C3

ncbi_submitter: INGEBI-CONICET


ncbi_organism_name: Pseudoxanthomonas koreensis

ncbi_submitter: Nakdonggang National Institute of Biological Resources (NNIBR)


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Xiamen University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Treponema sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: University of Chicago


ncbi_country: USA

ncbi_isolation_source: beef

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: gut

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: China: hospital

ncbi_isolation_source: Sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_isolation_source: air medium

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: plant

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: Michigan

ncbi_isolation_source: University of Michigan Health System

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Michigan


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_country: Cambodia

ncbi_organism_name: Mycolicibacter sinensis

ncbi_submitter: JCVI


ncbi_organism_name: Streptococcus pneumoniae INV104

ncbi_submitter: The Wellcome Trust Sanger Institute


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerofustis stercorihominis

ncbi_submitter: Washington University in St. Louis


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei


ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa: FOSA Hospital

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0060

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: coastal Georgia; Sapelo Island

ncbi_isolation_source: Coastal seawater

ncbi_organism_name: Cyanobium sp. 16_1

ncbi_submitter: Sapelo Island Microbial Carbon Observatory


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 192 - depth 500m

ncbi_organism_name: Erythrobacter sp. REDSEA-S45_B7

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Luzhou

ncbi_isolation_source: pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_assembly_name: Hheil

ncbi_organism_name: Helicobacter heilmannii

ncbi_submitter: UGENT


ncbi_country: USA: Canoe Cove; Nahant; MA

ncbi_isolation_source: filtered seawater; 0.2-1 micron fraction

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Greece

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: Sichuan University of Science and Engineering


ncbi_country: Costa Rica:Cuenca Murcielago

ncbi_isolation_source: Cuenca Murcielago travertine

ncbi_organism_name: Alphaproteobacteria bacterium UBA998

ncbi_submitter: University of Queensland


ncbi_isolation_source: Sea water

ncbi_organism_name: Pseudoalteromonas lipolytica SCSIO 04301

ncbi_strain_identifiers: SCSIO 04301

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_country: China: Jiangsu

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Parana

ncbi_isolation_source: liver tissue

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: State University of Londrina


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: South China Agricultural University


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_assembly_name: freshwater MAG --- YR_bin-3069

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_country: USA: Ohio; Lake Erie; Sandusky Bay

ncbi_isolation_source: Freshwater

ncbi_organism_name: Planktothrix agardhii 1033

ncbi_submitter: Bowling Green State University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter freundii

ncbi_strain_identifiers: P106E PI

ncbi_submitter: Imperial College London


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: EMG


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Rhodoluna sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Rhodoluna;x__environmental samples;s__uncultured Rhodoluna sp.


ncbi_country: China: Hunan Linxiang

ncbi_isolation_source: farmland soil

ncbi_organism_name: Niastella vici

ncbi_submitter: Huzhong Agricultural University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Brazil: Fortaleza

ncbi_submitter: LNCC


ncbi_organism_name: Bacillota bacterium HCP3S3_F3_2

ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Bacillota bacterium HCP3S3_F3_2


ncbi_organism_name: Luteimonas sp. R10

ncbi_submitter: Xinjiang Academy of Agricultural Sciences


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4097

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Sulfurimonadaceae bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Carnegie Institution for Science


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hainan University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA

ncbi_isolation_source: shower drain

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Ningbo city

ncbi_isolation_source: sediment

ncbi_organism_name: Hanstruepera marina

ncbi_submitter: Ningbo University


ncbi_country: China: Hebei

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Listeria grayi

ncbi_submitter: SC


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Berkeley


gtdb_type_species_of_genus: t

ncbi_country: Russia: Moscow

ncbi_isolation_source: stool sample

ncbi_submitter: Pirogov Russian National Research Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Barnesiellaceae;g__Coprobacter;s__Coprobacter fastidiosus;x__Coprobacter fastidiosus NSB1 = JCM 33896


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Pacific Ocean: Western North Pacific Station S1

ncbi_isolation_source: seawater

ncbi_organism_name: Aureitalea marina

ncbi_submitter: Atmosphere and Ocean Research Institute, The University of Tokyo


ncbi_country: Thailand:Phetchaburi Province

ncbi_isolation_source: sediments

ncbi_organism_name: Novosphingobium sp. PY1

ncbi_submitter: Department of Engineering, Graduate School of Integrated Science and Technology, Shizuoka University


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_submitter: University of Gothenburg - CCUG


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: The University Hong Kong


ncbi_assembly_name: freshwater MAG --- MJ-2014-D5_bin-361

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_assembly_name: IMG-taxon 2724679920 annotated assembly

ncbi_organism_name: Desulfurobacterium atlanticum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_country: Thailand: southern

ncbi_isolation_source: Shrimp farm

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Rhode Island


ncbi_country: China: Nanchang

ncbi_isolation_source: rectal swab from healthy participants

ncbi_submitter: beijing


ncbi_organism_name: uncultured Pseudonocardia sp.

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: AAFC


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1426993

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Kansas

ncbi_submitter: University of Guelph


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_submitter: SC


ncbi_submitter: CLUE-TERRA


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: University of Southern California


ncbi_country: Sweden: Orebro

ncbi_isolation_source: periprosthetic tissue

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: China: JiangSu

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: USA

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Commensalibacter melissae

ncbi_submitter: University of Lausanne


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC006997

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: NDB2Meth1 assembly 1

ncbi_isolation_source: Coal seam gas extraction bore well

ncbi_organism_name: Novosphingobium sp. NDB2Meth1

ncbi_submitter: Griffith University


ncbi_country: India: Pune

ncbi_isolation_source: Pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: Rectal swab

ncbi_submitter: JCVI


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-finished water

ncbi_organism_name: Methylomonas sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Caldibacillus sp. NES_3

ncbi_submitter: American University of Nigeria


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_isolation_source: Mouth

ncbi_organism_name: Veillonella rodentium

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_organism_name: Anaerococcus nagyae

ncbi_submitter: BGI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_assembly_name: IMG-taxon 2700988694 annotated assembly

ncbi_organism_name: Tangfeifania diversioriginum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eisenbergiella porci

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Montreal; Quebec

ncbi_isolation_source: commercial probiotic

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: McGill University


ncbi_country: Japan

ncbi_submitter: Toho university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_submitter: FDA/CDC


ncbi_country: France:Paris; Seine River

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite Parsi-Saclay/ UMR1184


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Edwardsbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Edwardsiibacteriota;x__unclassified Candidatus Edwardsbacteria;s__Candidatus Edwardsbacteria bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Roseburia sp.


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Sulfurovum sp.

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Greece: Athens

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Unniversity of Queensland


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Zimbabwe

ncbi_isolation_source: milk powder plant

ncbi_submitter: FDA/CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter;s__Cronobacter dublinensis;sb__Cronobacter dublinensis subsp. lactaridi;x__Cronobacter dublinensis subsp. lactaridi LMG 23825


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis 2001072

ncbi_submitter: IGS


ncbi_country: USA: Boston

ncbi_isolation_source: Stool Culture

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus gallolyticus subsp. gallolyticus

ncbi_submitter: Region Zealand


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_country: USA: Poland; Maine

ncbi_isolation_source: bog

ncbi_organism_name: Chromobacterium sphagni

ncbi_strain_identifiers: IIBBL 37-2

ncbi_submitter: USDA-ARS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Cardidatus Bartonella washoeensis 085-0475


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Stony Brook University


ncbi_country: China: Qinghai province

ncbi_organism_name: Corynebacterium yudongzhengii

ncbi_submitter: Chinese center for disease control and prevention


ncbi_assembly_name: freshwater MAG --- B4coas_bin-0200

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: South Korea:Yeosu

ncbi_isolation_source: isolated from tidal flat sediment

ncbi_organism_name: Paracoccus aestuarii

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Psychroserpens sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Belgium

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: PREPARE (Platform foR European Preparedness Against (Re-)Emerging Epidemics, EU-FP7, # 602525


ncbi_organism_name: Enterobacter cloacae complex sp. 357I10

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 357I10


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Bremen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhongnan Hospital of Wuhan University


ncbi_country: Antarctica: South Shetland Islands; Chester Cone Lake

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechococcus sp. CS-1324

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_organism_name: Angustibacter luteus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Streptomyces sp. x-45

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: CNTA 628

ncbi_submitter: CNTA


ncbi_organism_name: Enterobacter cloacae complex sp. 358K9

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 358K9


ncbi_organism_name: Kitasatospora sp. NBC_01539

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Reunion: Sainte-Clotilde

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CHU de Rennes


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: water

ncbi_organism_name: Alphaproteobacteria bacterium UBA5951

ncbi_submitter: University of Queensland


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Italy

ncbi_isolation_source: sandwich

ncbi_submitter: FDA


ncbi_country: Czech Republic

ncbi_organism_name: Gallibacterium anatis CCM5995

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: IMG-taxon 2634166197 annotated assembly

ncbi_organism_name: Arthrobacter alpinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Flavobacterium sp. RSP49

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: South Africa: Mpumalanga

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 101

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-325-E23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;x__unclassified Candidatus Zambryskiibacteriota;s__Candidatus Zambryskiibacteriota bacterium


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Mahidol University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Listeria ivanovii subsp. londoniensis

ncbi_submitter: ETH Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria ivanovii;sb__Listeria ivanovii subsp. londoniensis


ncbi_country: USA: NY

ncbi_isolation_source: stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000964


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_submitter: Hospital Ramon y Cajal


ncbi_organism_name: Marinilactibacillus psychrotolerans

ncbi_submitter: Agroscope


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus SJUD6104

ncbi_submitter: Broad Institute


ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__;c__;o__;f__;g__Candidatus Galligastranaerophilus;s__Candidatus Galligastranaerophilus intestinavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Galligastranaerophilus;s__Candidatus Galligastranaerophilus intestinavium


ncbi_country: United Kingdom: Newcastle University

ncbi_isolation_source: pus from dental abscess

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Oregon Health and Science University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Hungary: Budapest

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: Semmelweis University


ncbi_country: New Zealand

ncbi_isolation_source: Skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: heart

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_country: Ireland

ncbi_isolation_source: salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Roseomonas mucosa

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Japan

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 1; Comp 2; UV layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Auburn; Alabama

ncbi_isolation_source: gills

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: U.S. Department of Agriculture


ncbi_country: Japan:Kanagawa; Miura; Misaki

ncbi_isolation_source: octopus

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: EMG


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Duodenibacillus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Quanzhou Bay

ncbi_isolation_source: Coastal sediment

ncbi_organism_name: Aestuariivivens sediminis

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Pontibacter aydingkolensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: dairy product

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Kingston University London, United Kingdom


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Chile: Santiago

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_country: China: NeiMonggal

ncbi_isolation_source: diseased goat

ncbi_organism_name: Brucella melitensis bv. 1

ncbi_submitter: National Institute for Communicable Disease Control & Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Exiguobacterium sp. UBA2577

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. UBA2577


ncbi_country: Canada: Manitou Rapids; ON

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Canada

ncbi_isolation_source: female midstream urine sample

ncbi_organism_name: Mixta calida B021323

ncbi_submitter: University of Regina


ncbi_organism_name: uncultured Alcanivorax sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: NNAb 2488

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_organism_name: Candidatus Pelagibacter ubique HTCC1062

ncbi_submitter: Oregon State University

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;s__Candidatus Pelagibacter communis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;s__Candidatus Pelagibacter communis;x__Candidatus Pelagibacter ubique HTCC1062


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_country: USA

ncbi_organism_name: Campylobacter coli 67-8

ncbi_submitter: Cornell University


ncbi_country: Germany

ncbi_isolation_source: Nodule tissue

ncbi_organism_name: Mesorhizobium onobrychidis

ncbi_submitter: Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), PB, EP


ncbi_isolation_source: decomposition metagenome

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_country: France

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_country: Bangladesh: Saint Martin s Island

ncbi_isolation_source: marine sponge

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Cellvibrionales bacterium UBA1963


ncbi_country: Chile

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Concepcion


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: BGI


ncbi_country: USA: Indian River Lagoon; Florida

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Central Florida


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Calgary


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Litorivicinaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Longimicrobiales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Streptomyces achromogenes


ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: rectal swab

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University


ncbi_assembly_name: Brochothrix thermosphacta  BSAS1 3

ncbi_isolate: BSAS1 3

ncbi_isolation_source: Beef slaughterhouse environment

ncbi_organism_name: Brochothrix thermosphacta

ncbi_strain_identifiers: BSAS1 3

ncbi_submitter: INRA - Oniris


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: BGI-Shenzhen


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Shandong

ncbi_isolation_source: nasal swab

ncbi_submitter: China Agriculture University


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: China: Nanjing

ncbi_isolation_source: pesticide

ncbi_organism_name: Cognatiluteimonas sedimenti

ncbi_submitter: NANJING ARGRICULTURE UNIVERSITY


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Georgia

ncbi_isolation_source: nasopharyngeal swab of healthy child between ages five months and five years old

ncbi_organism_name: Streptococcus pneumoniae NP170

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Xin Hua Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: water

ncbi_organism_name: Patescibacteria group bacterium UBA1567

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA1567


ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Nanjing University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Blautia sp. TF11-31AT

ncbi_submitter: BGI


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Silver Spring

ncbi_isolation_source: lesion

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: DSM 799

ncbi_submitter: University of Applied Sciences of Western Switzerland hepia


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Ghana

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Copenhagen


ncbi_country: Mediterranean Sea

ncbi_organism_name: Hellea balneolensis DSM 19091

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Thaumasiovibrio occultus

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Bacteroides sp.


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Streptococcus pneumoniae SPN032672

ncbi_submitter: Wellcome Trust Sanger Institute


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Luzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: DP

ncbi_submitter: university


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_strain_identifiers: PEER 101

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: Japan: Yokahama

ncbi_isolation_source: Dirt alley near Maruyama Cho shopping area

ncbi_organism_name: Sporosarcina sp. P29

ncbi_submitter: University of Arizona


ncbi_organism_name: Litorivivens sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Liaocheng

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella michiganensis


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: USA: New York

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: University of Chicago


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 403

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: SNUC 2694

ncbi_submitter: University of Calgary


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_assembly_name: freshwater MAG --- Ja_bin-4836

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: swab

ncbi_strain_identifiers: LBMM 6410

ncbi_submitter: University of the Basque Country


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Yersinia pestis 71021

ncbi_submitter: Beijing Genomics Institute


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Durham; New Hampshire

ncbi_isolation_source: Fecal Material

ncbi_organism_name: Streptomyces sp. LRa12

ncbi_submitter: Hubbard Center for Genome Studies


ncbi_organism_name: uncultured Gulosibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Ningbo University


ncbi_country: Russia: Samara

ncbi_organism_name: Burkholderia stabilis

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Poland: Cracow

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_isolate: AOP33_10_coeur _bin _6

ncbi_organism_name: Levilactobacillus brevis

ncbi_strain_identifiers: AOP33_10_coeur _bin _6

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces araujoniae

ncbi_submitter: Guizhou University


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: 1_01;CUPS TF 6

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Thermodesulforhabdaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces sp. NPDC059134

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Enterocloster sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Rickettsiales bacterium UBA4270

ncbi_submitter: University of Queensland


ncbi_country: France: Limoges

ncbi_isolation_source: patient

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universite Paris Sud


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Trichococcus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella sp. K20285

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: fecal sample

ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptomyces sp. NPDC007057


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University


ncbi_country: China: Zhejiang

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: Kenya: Kisumu

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: USAMRD-A


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Background Grass (no manure on field)

ncbi_strain_identifiers: G2 BM LAM CEF 2

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Acinetobacter venetianus

ncbi_submitter: Ocean University of China


ncbi_country: Belgium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Siminovitchia;s__Siminovitchia fordii;x__Siminovitchia fordii DSM 16014 = CIP 108821


ncbi_organism_name: Brevundimonas vancanneytii

ncbi_submitter: Biology Centre CAS


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: PA

ncbi_isolation_source: milk bovine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Vienna


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: USA:New York Ontario

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. incanae

ncbi_submitter: Cornell University


ncbi_country: Iran

ncbi_organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens

ncbi_strain_identifiers: CFBP 8820

ncbi_submitter: University of Tehran


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: EMG


ncbi_country: Malaysia

ncbi_isolation_source: Ear Swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Malaya


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Agromyces fucosus

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Zhejiang university


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Thauera sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: China

ncbi_isolation_source: seawater

ncbi_organism_name: Aquimarina acroporae

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_country: Russia: Samara Region

ncbi_isolation_source: Ready-to-cook meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Qinghai

ncbi_organism_name: Streptomyces qaidamensis

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Candidatus Rifleibacterium sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rifleibacteriota;x__Candidatus Rifleibacteriota incertae sedis;g__Candidatus Rifleibacterium;x__unclassified Candidatus Rifleibacterium;s__Candidatus Rifleibacterium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Neisseria meningitidis M04-240196

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. AF15-31

ncbi_submitter: BGI


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Aequorivita sediminis

ncbi_submitter: shandong unviersity


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Poland

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Candidatus Accumulibacter contiguus

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter contiguus


ncbi_assembly_name: freshwater MAG --- AM_bin-4692

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Denmark

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Aequorivita sinensis

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Chalon-sur saone

ncbi_isolation_source: urine

ncbi_submitter: CHU de Rennes


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: blood

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parasutterella sp.


ncbi_country: Thailand: Sing Buri Province

ncbi_isolation_source: gills of Trichogaster pectoralis

ncbi_organism_name: Candidatus Protochlamydia amoebophila

ncbi_submitter: University of Vienna


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Japan:Miyazaki Prefecture

ncbi_isolation_source: composting distilled shochu residue

ncbi_organism_name: Oenococcus kitaharae

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_organism_name: Pedobacter sp. UYP30

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Serratia marcescens

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_organism_name: Mycoplasmoides pneumoniae M129-B7

ncbi_submitter: University of Alabama at Birmingham


ncbi_organism_name: Streptomyces sp. NPDC102415

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Fujian; Xiamen

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Fujian Provincial Center for Disease Control and Prevention


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Poultry Polony

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_country: Namibia

ncbi_isolation_source: Stegodyphus dumicola nest material

ncbi_organism_name: Sphingomonas sp. PL-96

ncbi_submitter: Aarhus university


ncbi_organism_name: Acidiphilium acidophilum

ncbi_strain_identifiers: DSMZ 700

ncbi_submitter: Cultivarium


ncbi_organism_name: Negativibacillus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__unclassified Negativibacillus;s__Negativibacillus sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_organism_name: Salmonella sp. NW135

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptococcus pluranimalium

ncbi_submitter: The Centre for Infectious Disease Genomics and One Health, Simon Fraser University


ncbi_isolation_source: screen

ncbi_organism_name: Escherichia coli

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: sediment

ncbi_organism_name: Xanthobacter autotrophicus

ncbi_submitter: University of East Anglia


ncbi_country: China: Shanghai

ncbi_isolation_source: gut

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Paenibacillus sp. HGF7

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Prevotellamassilia timonensis


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Graz University of Technology


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: Nocardia sp. NPDC004068

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Alistipes dispar


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agriculture University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India: Chattisgarh

ncbi_isolation_source: Hot spring_98deg.

ncbi_organism_name: Thermosynechococcus sp. M98_K2018_005

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_isolation_source: Faeces


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W28469

ncbi_submitter: Broad Institute


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology Sydney


ncbi_country: Italy

ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: France:French Brittany

ncbi_isolation_source: patient clinical isolate

ncbi_submitter: Houston Methodist Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: USA: Virginia

ncbi_isolation_source: soil

ncbi_organism_name: Paraburkholderia bonniea

ncbi_submitter: Colby College


ncbi_isolation_source: meat


ncbi_organism_name: Klebsiella sp. GB_Kp054

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: uncultured Ruegeria sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: United Kingdom: Guernsey; Channel Islands

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: ICMP 2844

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: Russia: Altai Republic; Pervomayskiy district; Pokrovka village

ncbi_organism_name: Francisella tularensis subsp. mediasiatica

ncbi_submitter: SRCAMB


ncbi_country: China

ncbi_isolation_source: hyperthermophilic anaerobic system

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: United Kingdom: Esthwaite Water

ncbi_isolation_source: Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water

ncbi_organism_name: Flavobacterium sp. BFFFF2

ncbi_submitter: CNRS-AMU


ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus


ncbi_organism_name: Clostridium sp. CAG:452

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sediment sample collected from floor of poultry farm

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: Clemson University


ncbi_isolation_source: lake sediment

ncbi_organism_name: Pseudonocardia lacus

ncbi_submitter: Chengdu University


ncbi_country: Uruguay

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-7691

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: WA

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: University of Washington


ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: South Korea: Chungbuk

ncbi_organism_name: Nocardioides humilatus

ncbi_submitter: Korea research institute of biotechnology bioscience


ncbi_organism_name: Streptomyces sp. NPDC005098

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Ascites

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: USA

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: JCVI


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Nice

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0292

ncbi_organism_name: uncultured Schlesneria sp.


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG10766

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Aeromonadales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Capnocytophaga leadbetteri


ncbi_country: Venezuela

ncbi_organism_name: Shigella sonnei


ncbi_country: Israel: Achziv nature marine reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Haifa


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp22 AA2

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp22 AA2

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: University of Chicago


ncbi_country: Mexico

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_country: USA:Washington DC

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Faecalimonas sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: blood of an infected pig

ncbi_organism_name: Mycoplasma suis str. Illinois

ncbi_strain_identifiers: Illinois

ncbi_submitter: Purdue University

ncbi_type_material_designation: assembly designated as reftype


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Hopital Bicetre


ncbi_organism_name: Vibrio sp. 1457

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Citrobacter sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Palleronia rufa

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Penn State


ncbi_organism_name: Roseomonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Blackallbacteria bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Blackallbacteria;x__unclassified Candidatus Blackallbacteria;s__Candidatus Blackallbacteria bacterium


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-