ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Sweden: Stordalen Mire

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


gtdb_representative: f

ncbi_assembly_level: Contig

ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_assembly_level: Complete Genome

ncbi_country: Russia

ncbi_isolation_source: pelvic cavity of a patient with salpingitis and tubo-ovarian abscess

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Federal Budget Institution of Science Central Research Institute for Epidemiology


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_organism_name: Candidatus Spyradosoma sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__Opitutia incertae sedis;g__Candidatus Spyradosoma;x__unclassified Candidatus Spyradosoma;s__Candidatus Spyradosoma sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Streptomyces sp. V4I2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Xenorhabdus sp. KJ12.1

ncbi_submitter: Goethe University


ncbi_submitter: Quadram Institutte


ncbi_country: USA

ncbi_isolation_source: peritoneal cavity

ncbi_organism_name: Escherichia coli

ncbi_submitter: Pennsylvania State University


ncbi_submitter: Shandong University


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S060_01291

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: phlegm

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: MO

ncbi_isolation_source: powder infant formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Czech Academy of Science


ncbi_submitter: Colorado State University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


gtdb_type_species_of_genus: t

ncbi_organism_name: Dinghuibacter silviterrae

ncbi_refseq_category: reference genome

ncbi_type_material_designation: assembly from type material


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Water sample of Tiete River

ncbi_submitter: University of Sao Paulo


ncbi_submitter: Ares Genetics GmbH


ncbi_country: Portugal: Avo; Oliveira do Hospital

ncbi_organism_name: Erwinia endophytica

ncbi_submitter: University of Coimbra


ncbi_organism_name: Stenotrophomonas indicatrix


ncbi_country: Tunisia: Tunis

ncbi_isolation_source: rock

ncbi_organism_name: Streptomyces sp. G44

ncbi_submitter: University of Tunis El Manar


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Pacific Ocean: the Okinawa Trough

ncbi_isolation_source: surface seawater

ncbi_organism_name: Stakelama marina

ncbi_submitter: Ocean University of China


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_isolation_source: Pork

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paenibacillus sp. FSL R7-0312

ncbi_submitter: Penn State


ncbi_country: India

ncbi_isolation_source: stool

ncbi_submitter: Christian Medical College


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China:Jiangxi; Shangrao

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China:Henan; Pingdingshan

ncbi_strain_identifiers: GPS89 HNPDS 2021-2


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Rhizobium sp. ZX09

ncbi_submitter: Center for Molecular Metabolism


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: Thailand

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Switzerland: Lake Lugano

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechococcus sp. Lug-A

ncbi_strain_identifiers: Lug-A

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: Daniel Boone National Forest; KY

ncbi_isolate: MAG 5

ncbi_isolation_source: acid mine drainage site biofilm from Rose Pool

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_strain_identifiers: MAG 5

ncbi_submitter: University of California Davis


ncbi_isolation_source: gut content

ncbi_organism_name: Mediterraneibacter agrestimuris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Brucella pseudogrignonensis

ncbi_submitter: Zoological Institute, Kiel University


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Chryseobacterium vietnamense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Halopseudomonas sp.


ncbi_country: Portugal: Porto

ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Paracoccaceae bacterium


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_country: USA: Madison; Wisconsin

ncbi_isolation_source: nasal lavage fluid

ncbi_organism_name: Rothia aeria


ncbi_organism_name: Waltera sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Segatella copri

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: UIUC


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_assembly_name: freshwater MAG --- YR2_bin-0479

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- Loc080925-7m_bin-1033

ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_genome_category: derived from single cell

ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Rouyn-Noranda

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acetobacter sp. 46_36

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Algeria: Colonel Abbas Beach in Zeralda; Algiers

ncbi_isolation_source: Sea water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Pasteur Institute of Algeria


ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Switzerland:Lake Cadagno

ncbi_isolation_source: Lake Cadagno chemocline

ncbi_organism_name: Methyloversatilis discipulorum

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Sweden

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfuromonas sp.

ncbi_submitter: University of Bremen


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Zhejiang Province

ncbi_isolation_source: Chicken fecal material

ncbi_organism_name: Helicobacter anseris

ncbi_submitter: China CDC


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- A-1_bin-433

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylophilaceae bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA

ncbi_organism_name: Bordetella pertussis STO1-SEAT-0007

ncbi_submitter: JCVI


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_assembly_name: IMG-taxon 2623620583 annotated assembly

ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 2 / B; 5m depth; 0.2 filter

ncbi_organism_name: Elusimicrobia bacterium GWB2_63_16

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;x__unclassified Elusimicrobiota;s__Elusimicrobia bacterium GWB2_63_16


ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AM26-12LB

ncbi_submitter: BGI


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Prevotella avicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudomonas lactis

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Geotalea toluenoxydans JCM 15764

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: creek

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. PRS_2010_0624


ncbi_organism_name: Stappia sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: seawater

ncbi_organism_name: Flavobacterium sp. J27

ncbi_submitter: Shenzhen University


ncbi_country: Japan:Aoyama Cemetery in Tokyo

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium terricola

ncbi_submitter: RIKEN SPring-8 Center


ncbi_country: South Africa: Mafikeng

ncbi_isolation_source: root

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: North-West University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tecnologico de Monterrey


ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC056400

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Melbourne


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Staphylococcus sp. AntiMn-1

ncbi_strain_identifiers: AntiMn-1;deep-sea sediment of east Pacific Nodule Province

ncbi_submitter: Zhejiang Wanli University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: CLC assembled contigs

ncbi_country: Saudi Arabia

ncbi_isolation_source: sea water

ncbi_organism_name: Candidatus Pelagibacter communis

ncbi_strain_identifiers: SCGC AAA797-I19

ncbi_submitter: UNIVERSITY OF CALIFORNIA - SAN DIEGO

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;s__Candidatus Pelagibacter communis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;s__Candidatus Pelagibacter communis


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: CDPHE SARS-CoV-2 submissions


ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_isolation_source: Pharyngeal

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-295

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_strain_identifiers: new MAG-295

ncbi_submitter: Micoorganism

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_isolate: Klebsiella pneumoniae

ncbi_strain_identifiers: Klebsiella pneumoniae

ncbi_submitter: Instituto de Salud Carlos III


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_assembly_level: Chromosome

ncbi_isolation_source: fastidious anaerobic agar

ncbi_organism_name: Acidaminococcus intestini

ncbi_strain_identifiers: 14 LG


ncbi_country: USA: KS

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: Faroe Islands: NA; Torshavn garden under a maple tree; about 100 m altitude

ncbi_organism_name: Streptomyces mirabilis


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: IZSLER


ncbi_country: China: Tengchong

ncbi_isolation_source: hot spring

ncbi_organism_name: Meiothermus sp. CFH 77666

ncbi_submitter: Henan Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Deinococcota;c__Deinococci;o__Thermales;f__Thermaceae;g__Meiothermus;x__unclassified Meiothermus;s__Meiothermus sp. CFH 77666


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: abdomen skin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Xenorhabdus cabanillasii JM26

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: metagenome

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine sediments

ncbi_organism_name: Novosphingopyxis iocasae

ncbi_submitter: Institute of Oceanology, Chinese academy of sciences


ncbi_isolate: SPRUCE 60

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 60

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptococcus pneumoniae MNZ85

ncbi_submitter: University of Mississippi medical center


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_submitter: Equipe PHySE - HydroSciences Montpellier


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: USA: Massachusetts

ncbi_isolation_source: filtered seawater (1um filter)

ncbi_organism_name: Vibrio tasmaniensis 1F-155

ncbi_submitter: Broad Institute


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ohio

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas sp. RC3H12

ncbi_submitter: Bowling Green State University


ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Oman

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_organism_name: Lacticaseibacillus rhamnosus Lc 705

ncbi_submitter: Institute of Biotechnology, University of Helsinki, Finland


ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: Candidatus Obscuribacteraceae bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;x__unclassified Candidatus Obscuribacteraceae;s__Candidatus Obscuribacteraceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Campylobacter coli

ncbi_submitter: USDA


ncbi_organism_name: Acinetobacter sp. c2-A9

ncbi_submitter: China CDC


ncbi_organism_name: Bartonella sp. MR30HLJHH

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Leuconostoc holzapfelii

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. BZL2005


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_country: Mali

ncbi_isolation_source: C. aurantifolia

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Hengyang

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Ureibacillus thermosphaericus

ncbi_submitter: Ecole Centrale de Lyon


ncbi_country: Switzerland

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Chile

ncbi_isolation_source: activated sludge of kraft-pulp mill effluents

ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: Universidad Tecnologica Metropolitana (UTEM)


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: PTC fluid

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Wellcome Sanger Institute


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Broad Institute


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: USA: AR

ncbi_isolation_source: Young Chickens

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N60045F

ncbi_submitter: FDA


ncbi_country: Uganda

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. PAMC28654

ncbi_submitter: Korea University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Mozambique

ncbi_organism_name: Mycolicibacterium elephantis

ncbi_submitter: JCVI


ncbi_organism_name: Polyangiaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Denmark

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: University of Malaya


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bdellovibrio sp. ZAP7

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: Faeces


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R750;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_assembly_name: IMG-taxon 2622736608 annotated assembly

ncbi_organism_name: Lutibacter flavus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_name: freshwater MAG --- Loc090116-7m_bin-0202

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: USA: GA

ncbi_isolation_source: peanut butter

ncbi_submitter: Washington State Department of Health Public Health Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Ethiopia

ncbi_isolation_source: food

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro


ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: University of California, Los Angeles


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacteroides xylanisolvens


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: HOSPITAL UNIVERSITARIO DONOSTIA


ncbi_country: Estonia: Viljandimaa

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: University of the Free State


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Celastrina argiolus


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Gansu

ncbi_isolation_source: rectum

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NWAFU


ncbi_country: China: Jinhua

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: Caecum


ncbi_isolation_source: BLOOD

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: USA:New Orleans

ncbi_isolation_source: leg wound

ncbi_organism_name: Aeromonas diversa CDC 2478-85

ncbi_submitter: University of Barcelona


ncbi_submitter: Brigham & Women's Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Thailand:Pathum Thani

ncbi_isolation_source: intestine

ncbi_organism_name: Bacillus sp. Man122

ncbi_submitter: Prince of Songkla University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Man122


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-3981

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_assembly_name: Salmonella enterica CVM N44709 v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Chicken Wings

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Pasteurella multocida


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Lactiplantibacillus plantarum DOMLa

ncbi_strain_identifiers: DOMLa

ncbi_submitter: State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: water

ncbi_organism_name: Campylobacter hyointestinalis subsp. hyointestinalis

ncbi_submitter: SC


ncbi_organism_name: Oliverpabstia intestinalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter europaeus

ncbi_submitter: SurvCARE


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Argentina: Misiones; San Vicente

ncbi_isolation_source: Rhizosphere of Ilex paraguariensis St. Hil

ncbi_organism_name: Kosakonia radicincitans YD4

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Marivivens sp.

ncbi_submitter: University of Georgia


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: China: Shandong

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China agricultural university


ncbi_country: Australia

ncbi_isolation_source: cattle feces

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: China: Hainan

ncbi_organism_name: Brucella melitensis

ncbi_submitter: china centre for disease control and prevention


ncbi_organism_name: Streptococcus suis 42A

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: milk from an udder

ncbi_organism_name: Streptococcus uberis C9359

ncbi_submitter: University of Nottingham


ncbi_country: Brazil

ncbi_isolation_source: Meconium

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_strain_identifiers: NCPPB 1646

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: China Agricultural University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Sporosarcina sp. NPDC096371

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Roseovarius mucosus

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Dysgonomonas mossii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces globisporus


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: AOP38_B2_surf _bin _16

ncbi_organism_name: Moraxellaceae bacterium

ncbi_strain_identifiers: AOP38_B2_surf _bin _16

ncbi_submitter: Genoscope


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_organism_name: Streptomyces sp. NPDC015245


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_country: Israel: Tel Aviv

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: China: Guizhou

ncbi_isolation_source: surface-sterilized tissue of plant

ncbi_organism_name: Paenibacillus thalictri

ncbi_submitter: Research Center for Medicine & Biology


ncbi_country: South Korea: Gangwon-do

ncbi_organism_name: Verrucomicrobia bacterium IMCC26134

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium IMCC26134


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Campoletis raptor


ncbi_country: Armenia

ncbi_isolation_source: Urinary tract

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: university of west london


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Florida


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Deakin University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: soil

ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Tsinghua University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Synechococcus sp. M16CYN

ncbi_submitter: Center for Computational Sciences, University of Tsukuba


ncbi_isolation_source: tissue

ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Resphera Biosciences


ncbi_country: China: Hangzhou

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Anatum

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Actinoplanes sp.


ncbi_country: Australia: Darwin; Northern Territory

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Menzies School of Health Research


ncbi_organism_name: Mesorhizobium sp. L103C131B0

ncbi_submitter: University of Southern California


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Arsukibacterium sp. UBA5043

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_isolation_source: marine metagenome


ncbi_country: USA: California; Los Angeles County

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Arctic Ocean: Gakkel Ridge; Loki s castle

ncbi_isolation_source: marine sediment core GS08_GC12; 126 cmbsf

ncbi_organism_name: Candidatus Anoxychlamydiales bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Candidatus Anoxychlamydiales;x__unclassified Candidatus Anoxychlamydiales;s__Candidatus Anoxychlamydiales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_country: Papua New Guinea: Hoia Bay

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Moorena sp. SIO3I8

ncbi_submitter: UCSD


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Poultry

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22934;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Anode biofilm

ncbi_organism_name: Bacillales bacterium UBA7706


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University


ncbi_country: USA: Lincoln; Arkansas

ncbi_isolation_source: proximal right femur

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_organism_name: Nitratireductor sp.


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: South Korea

ncbi_organism_name: Jeotgalibaca dankookensis

ncbi_submitter: Kyung Hee University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Retail fresh mint

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Institute of Biochemistry and Biophysics Polish Academy of Sciences


ncbi_country: China: Hunan

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter sp. YH16056_T

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG12126

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_country: Peru


ncbi_strain_identifiers: Denmark 1331

ncbi_submitter: Microbial Genome Research Center, CASPMI, IM-CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis BCG;x__Mycobacterium tuberculosis variant bovis BCG str. ATCC 35733


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Megasphaera sp. D52t1_170925_H4

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Iran: Zanjan

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas farris

ncbi_submitter: KU Leuven


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Genomic Research Laboratory


ncbi_organism_name: Vibrio jasicida 090810c

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio jasicida;x__Vibrio jasicida 090810c


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Mycolicibacterium alvei

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: fermented dairy product

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_organism_name: Rheinheimera muenzenbergensis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Vibrio tasmaniensis

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Neisseria meningitidis NM3131

ncbi_submitter: IGS


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: USA: California; Placer County; Roseville; Pleasant Grove

ncbi_isolation_source: Fresh water pond

ncbi_organism_name: Massilia hydrophila

ncbi_submitter: Sierra College


ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0900

ncbi_submitter: Broad Institute


ncbi_country: USA: DC

ncbi_isolation_source: Broviac blood

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Poland

ncbi_isolation_source: sauerkrout

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_strain_identifiers: CIRM-BIA 908

ncbi_submitter: Brigham Young University


ncbi_country: China: Beijing

ncbi_organism_name: Nocardia farcinica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Singulisphaera sp. GP187

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Fibrobacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__unclassified Fibrobacterota;s__Fibrobacterota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Vibrio splendidus


ncbi_country: Morocco: Rabat-Sale-Zemmour-Zaer; Khemisset Province

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Propionibacterium acidifaciens

ncbi_submitter: EMG


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_submitter: Center of Excellence in Diagnosis and Monitoring of Animal Pathogens(DMAP), Bangkok, Thailand

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_organism_name: Escherichia coli

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Rheinheimera sp.


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. NW1043

ncbi_submitter: Sichuan University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Prochlorococcus sp. MIT 1318

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: uncultured Coprobacillaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: Marinobacter algicola

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacillales bacterium UBA4956

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_assembly_name: freshwater MAG --- VK_bin-4331

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- Loc090402-8m_bin-0944


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Delongiibacteriota;s__Candidatus Delongbacteria bacterium GWF2_40_14


ncbi_country: Algeria: El-Tarf

ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium canariense

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Hangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_organism_name: Escherichia coli PA2

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Colombia

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Xenococcaceae cyanobacterium MO_167.B52

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDK8D5P

ncbi_submitter: South China Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor

ncbi_organism_name: Paracoccus ferrooxidans

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Georgia


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SC


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_assembly_name: Rumen uncultured genome RUG11937

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:1013

ncbi_submitter: DTU


ncbi_isolation_source: Poultry

ncbi_strain_identifiers: CVM N32590PS

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis;x__Salmonella enterica subsp. enterica serovar Infantis str. CVM N32590PS


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: bee gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Instituto Gulbenkian de Ciencia


ncbi_organism_name: Selenomonas noxia


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Black Sea sulfidic water cellulose enrichment

ncbi_organism_name: Desulfatibacillum sp.

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7079

ncbi_submitter: University of Queensland


ncbi_country: Russia: Moscow

ncbi_submitter: RCPCM


ncbi_assembly_name: Escherichia coli CVM N33806PS v. 1.0

ncbi_isolation_source: Farm

ncbi_strain_identifiers: CVM N33806PS


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Leuconostoc carnosum

ncbi_submitter: World Institute of Kimchi


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pantoea vagans


ncbi_assembly_name: Rumen uncultured genome RUG12494

ncbi_organism_name: uncultured bacterium


ncbi_country: China: Beijing

ncbi_submitter: China CDC


ncbi_submitter: Translational Health Science and Technology Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolate: MAG 24

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Alteromonas sp.

ncbi_strain_identifiers: MAG 24

ncbi_submitter: WHOI


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia sp. MSMB2040

ncbi_submitter: Northern Arizona University


ncbi_country: China

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Antarctica

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudoalteromonas sp. SWXJ133

ncbi_submitter: Shandong University


ncbi_country: USA: Tulsa

ncbi_isolation_source: chicken liver

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Tulsa


ncbi_country: France: Ceillac

ncbi_isolation_source: biofilm on rocks in a stream

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae VAKPC278

ncbi_submitter: JCVI


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Pseudidiomarina tainanensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom: London

ncbi_isolation_source: Subgingival plaque

ncbi_organism_name: Selenomonas sp. oral taxon 126

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas;x__unclassified Selenomonas;s__Selenomonas sp. oral taxon 126


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Pacific Ocean: near Hawaii

ncbi_organism_name: Sulfitobacter sp. HI0023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Colombia: Narino

ncbi_isolation_source: water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_52_16


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_country: China: Qingdao

ncbi_isolation_source: sea sediment

ncbi_organism_name: Aurantimonas marianensis


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Rhodovulum sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Tanzania

ncbi_isolation_source: blood

ncbi_submitter: Muhimbili University of Health and Allied Sciences


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG13542

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_country: USA: North Carolina

ncbi_isolation_source: respiratory

ncbi_submitter: JCVI


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: human gut

ncbi_organism_name: Gardnerella vaginalis


ncbi_country: USA: San Mateo; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Ornatilinea sp.

ncbi_submitter: University of California, Berkeley


ncbi_assembly_name: Rumen uncultured genome RUG10828

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas soli

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Acinetobacter baumannii 58452

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Ares Genetics


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Legionella longbeachae

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: intestinal content

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: ChinaCDC


ncbi_country: Finland

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Israel:Rishon Le-Zion

ncbi_isolation_source: wheat roots in anaerobic condition with nitrous oxide addition

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: ARO-Agricultural Research Organization, Volcani Center


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Wyoming


ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guangdong Ocean University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen University


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Cadiz


ncbi_organism_name: Oceaniferula sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Virgibacillus byunsanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Michigan State University


ncbi_organism_name: Streptomyces sp. NPDC090493

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: PSGVP Mandals SI Patil Arts GB Patel Science and STKVS Commerce College


ncbi_organism_name: Bacteroides uniformis


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Waltera sp.


ncbi_assembly_name: Rumen uncultured genome RUG13544

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Pretoria

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_isolation_source: Soil

ncbi_organism_name: Paractinoplanes brasiliensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: University of Waterloo


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Nitriliruptorales bacterium

ncbi_submitter: McGill University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_assembly_name: IMG-taxon 2667527237 annotated assembly

ncbi_organism_name: Flagellimonas zhangzhouensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Candidatus Eubacterium faecipullorum

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: Soft tissue

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Bordetella sp.


ncbi_country: Denmark

ncbi_organism_name: Enterococcus faecium EnGen0173

ncbi_strain_identifiers: VAN 332

ncbi_submitter: Broad Institute


ncbi_country: Portugal: Azores

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis serovar vazensis

ncbi_strain_identifiers: BGSC 4CE1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar vazensis


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: INRA


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Escherichia coli

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Ares Genetics GmbH


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Desulfocapsa sp.

ncbi_submitter: Harvard University


ncbi_country: Suriname: Paramaribo

ncbi_isolation_source: Groin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_country: Australia: Boho South; VIC

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: University of Queensland


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Azospira oryzae


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California

ncbi_isolation_source: respiratory secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_country: Germany

ncbi_isolation_source: liver

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Biomaterial provider: Friedrich-Loeffler-Institute Federal Research Institute for Animal Health (FLI), Jena, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Salmonella enterica

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Sutterella sp. UBA1442


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: anal swab

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China agricultural university


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Algeria: Ain Baida-Ouargla

ncbi_isolation_source: salt lake

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: University of Alberta

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;s__Candidatus Staskawiczbacteria bacterium RIFOXYB2_FULL_37_10


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: India

ncbi_submitter: Christian Medical College


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: intestinal content

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: ChinaCDC


ncbi_assembly_name: IMG-taxon 2690315624 annotated assembly

ncbi_organism_name: Chryseobacterium scophthalmum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mucinivorans sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_isolation_source: Derived from Escherichia coli strain K-12

ncbi_organism_name: Escherichia coli

ncbi_submitter: Environment and Climate Change Canada


ncbi_assembly_name: IMG-taxon 2634166309 annotated assembly

ncbi_organism_name: Tranquillimonas rosea


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_02_FULL_36_11


ncbi_country: China: Beijing

ncbi_isolation_source: tissue

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Surface of a polyethylene microplastic particle present in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Vibrio sp. THAF191c

ncbi_submitter: Uni Bielefeld


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Institute for Cellular and Intracellular Symbiosis UB RAS


ncbi_organism_name: Halanaerobiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Microgenomates group bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Guelph


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Paenarthrobacter nicotinovorans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Hospital Sirio-Libanes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Streptomyces gardneri


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_submitter: University of Waterloo


ncbi_country: Japan: Tokyo

ncbi_isolation_source: Soil found near a side wall in Hibya park (Tokyo; Japan)

ncbi_organism_name: Sporosarcina sp. P33

ncbi_submitter: California State University Northridge


ncbi_submitter: Colorado State University


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Washington


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_submitter: Texas Tech University


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Odoribacteraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Xuzhou

ncbi_isolation_source: ascitic fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_submitter: University College Cork


ncbi_country: China: Weihai; Shandong

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas sp. A3

ncbi_submitter: Shandong University


ncbi_isolation_source: Arctic Ocean sediment

ncbi_organism_name: Pseudomonas sp. CC6-YY-74

ncbi_submitter: the First Institute of Oceanography, SOA


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexi bacterium HGW-Chloroflexi-6

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium HGW-Chloroflexi-6


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Israel

ncbi_isolation_source: wheat field soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Agricultural Research Organization - the Volcani Center


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: MA

ncbi_isolation_source: feces

ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_isolate: isolate

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Streptomyces sp. NPDC050211

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Federal University of Para


ncbi_assembly_name: Rumen uncultured genome RUG10528

ncbi_isolation_source: cattle rumen


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Candidatus Aminicenantia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;x__unclassified Candidatus Aminicenantia;s__Candidatus Aminicenantia bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Austria

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_country: China: Shenzhen

ncbi_organism_name: Mitsuokella sp. AF33-22

ncbi_submitter: BGI


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: FL

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: University of Florida


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_01_FULL_37_16b


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Spain: Seville

ncbi_isolation_source: Tracheobronchial aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Biomedicine of Seville (IBiS)


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_country: Germany: Helgoland Roads

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Winogradskyella undariae

ncbi_submitter: Mediterranean Institute For Advanced Studies


ncbi_organism_name: Ligilactobacillus acidipiscis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_country: Peru: Hospital Apoyo; Iquitos

ncbi_organism_name: Leptospira noguchii

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: University of Louisville


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center