ncbi_country: South Africa

ncbi_isolation_source: peanut

ncbi_organism_name: Streptomyces sp. NRRL B-24085

ncbi_submitter: USDA/ARS/NCAUR


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Chung Cheng University


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_country: Germany: Goettingen

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: wastewater

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Verrucomicrobium spinosum

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ghent University


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: China CDC


ncbi_assembly_level: Contig

ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Campylobacter californiensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gimesia maris

ncbi_submitter: University of Queensland


ncbi_isolation_source: unknown

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: USDA


ncbi_country: China: Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: caecum

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Veterinary Research Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0473

ncbi_submitter: Broad Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Italy: not applicable

ncbi_isolation_source: sea

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Croatian Veterinary Institute


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridium sp. CCUG 7971

ncbi_strain_identifiers: CCUG 7971

ncbi_submitter: University of Gothenburg - CCUG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;x__unclassified Clostridium;s__Clostridium sp. CCUG 7971


ncbi_country: Germany

ncbi_isolation_source: dung beetles

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Canada: Lacombe

ncbi_organism_name: Mediterraneibacter faecis


ncbi_organism_name: Campylobacter sp. CFSAN122719

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Michigan


ncbi_assembly_name: freshwater MAG --- Loc090721-5m_bin-455

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Psychroserpens sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: Yale University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus salivarius


ncbi_organism_name: Salmonella sp. NW736

ncbi_submitter: Sichuan University


ncbi_organism_name: Microvirga sp.

ncbi_submitter: University of California Berkeley


ncbi_submitter: SRCAMB


ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Enterococcus hulanensis

ncbi_refseq_category: reference genome

ncbi_submitter: Northeast Agricultural University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9022

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: BAL 242 assembly

ncbi_isolate: BAL 242

ncbi_isolation_source: clinical sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: BAL 242

ncbi_submitter: LSHTM


ncbi_assembly_level: Chromosome

ncbi_country: China: Sanya

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Rhodococcus sp. 21391

ncbi_submitter: South China Sea Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 21391


ncbi_country: India

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_country: USA: California

ncbi_isolation_source: genital swab

ncbi_organism_name: Mycoplasma miroungigenitalium

ncbi_submitter: US FDA


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0009

ncbi_submitter: Broad Institute


ncbi_country: China: Yangzhou

ncbi_isolation_source: floor wipe

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Acholeplasmataceae bacterium


ncbi_organism_name: Mesorhizobium sp. M0027

ncbi_submitter: Washington State University


ncbi_organism_name: Micromonospora sp. MS34

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Kribbella jejuensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Lysinibacillus sp. NPDC092081

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Food Research Institute of National Agricultural and Food Center


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Niveibacterium terrae

ncbi_submitter: Nakdonggang National Institute of Biological Resources (NNIBR)


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China-Japan Friendship Hospital, Beijing, China.


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Chinese Academy of Fishery Sciences


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: burned soil

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Cellulomonadaceae bacterium


gtdb_type_species_of_genus: t

ncbi_country: China: South China Sea

ncbi_isolation_source: deep-sea surface sediment

ncbi_organism_name: Hydrocarboniclastica marina

ncbi_submitter: Third Institute of Oceanography,State Oceanic Administration


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12189

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_country: Colombia

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: University of California, Davis


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China: Beijing

ncbi_isolation_source: throat swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 301

ncbi_organism_name: Staphylococcus gallinarum

ncbi_strain_identifiers: SNUC 4861

ncbi_submitter: University of Calgary


ncbi_organism_name: Enterococcus sp. C92

ncbi_submitter: Northwest A & F University


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-09522

ncbi_organism_name: uncultured Mycobacteriaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sanguinis SK408

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Porcinotec Co., Ltd


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Aliarcobacter skirrowii


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: urinary tract

ncbi_organism_name: Klebsiella variicola


ncbi_organism_name: Escherichia coli K-12

ncbi_submitter: College of Life Sciences, Beijing Normal University


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Massachusetts

ncbi_organism_name: Aquitalea sp. ASV15

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Brazil: Eastern Amazon

ncbi_isolation_source: pasture soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Hyphomicrobium denitrificans ATCC 51888

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Malaysia

ncbi_isolation_source: Carnivorous Plant Phytotelma

ncbi_organism_name: Leucobacter sp. PH1c

ncbi_submitter: University of Malaya


ncbi_country: China: Jiangsu

ncbi_isolation_source: rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Italy

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Levilactobacillus brevis

ncbi_strain_identifiers: NBRC 3345

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Syntrophorhabdales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pediococcus pentosaceus

ncbi_strain_identifiers: NBRC 3182


ncbi_organism_name: Klebsiella sp. 123601

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptomyces luteogriseus

ncbi_submitter: EMG


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Teagasc


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Erciyes University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Valencia

ncbi_isolation_source: Biofilm clogging water pumps in ice machines

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Darwin Bioprospecting Excellence


ncbi_country: Australia: Gatton; Queensland

ncbi_isolation_source: fertile soil in a ploughed field

ncbi_organism_name: Telluria mixta

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. L-S2402


ncbi_country: USA: Tattnall Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Streptomyces sp. NPDC093093


ncbi_country: Canada: Ontario

ncbi_organism_name: Lysobacteraceae bacterium NML71-0210

ncbi_submitter: National Microbiology Laboratory/ Public Health Agency of Canada


ncbi_country: Belgium: Ghent

ncbi_isolation_source: cultured cell population

ncbi_strain_identifiers: Danish delta-sapM

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Brucella melitensis

ncbi_submitter: University of Pretoria


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Sea-surface microlayer

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_country: Malaysia: Penang

ncbi_isolation_source: Seawater

ncbi_organism_name: Bacillus sp. G3(2015)

ncbi_submitter: University of Malaya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. G3(2015)


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Candidatus Poriferisodalaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of British Columbia


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Helicobacter bizzozeronii

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Sphingomonas sp. CFBP9021

ncbi_submitter: INRAE


ncbi_country: Spain: Salinas at Santa Pola

ncbi_isolation_source: marine saltern

ncbi_organism_name: Rhodothalassium salexigens

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clavibacter michiganensis

ncbi_strain_identifiers: CFBP 9080

ncbi_submitter: University of Tehran


ncbi_organism_name: Streptomyces stelliscabiei

ncbi_submitter: Oregon State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: uncultured Sphingobacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Barnesiella intestinihominis


ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Mycobacterium sp. THU-M104

ncbi_submitter: Tsinghua university


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Streptomyces sp. NPDC088249

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_organism_name: Polaromonas sp. YR568

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Variovorax sp. ZT5R36

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;x__unclassified Candidatus Deferrimicrobiaceae;s__Candidatus Deferrimicrobiaceae bacterium


ncbi_isolation_source: spacecraft hardware

ncbi_organism_name: Niallia endozanthoxylica

ncbi_submitter: Jet Propulsion Laboratory


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California San Diego


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H81809

ncbi_submitter: Broad Institute


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Myroides sp. DF42-4-2

ncbi_submitter: City University of Hong Kong


ncbi_country: Sweden: near Kitkiojoki

ncbi_isolation_source: small freshwater lake

ncbi_organism_name: Polynucleobacter sp. JS-Polo-80-F4

ncbi_submitter: University of Innsbruck


ncbi_country: China: Zhejiang

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Acidothermaceae bacterium B102

ncbi_submitter: Hirosaki University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Mariprofundus sp.

ncbi_submitter: Portland State University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M144S2

ncbi_submitter: Universite de Montreal


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human stool

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Manitoba


ncbi_isolation_source: Small intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Church and Dwight


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Copenhagen


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_isolation_source: gut content

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_assembly_name: IMG-taxon 2651870313 annotated assembly

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Russia: North Osetia; Caucasus

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. HMSC19E03

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Weissella uvarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Prince Edward Island

ncbi_isolation_source: Imported/domestic retail Mussels

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: MAEPY2 1.0

ncbi_country: Malaysia

ncbi_isolation_source: Landfill leachate

ncbi_organism_name: Paenibacillus sp. MAEPY2

ncbi_submitter: Monash University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Sao Paulo; Santos

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Feces samples from rumen acidosis

ncbi_organism_name: Streptococcus equinus

ncbi_submitter: Veterinary Research Institute


ncbi_country: India

ncbi_organism_name: Leucobacter chromiiresistens

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: GNS Science


ncbi_organism_name: Mycolicibacterium septicum DSM 44393

ncbi_submitter: ebi


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Edinburgh


ncbi_assembly_name: Rumen uncultured genome RUG13769

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Brazil

ncbi_isolation_source: urine


ncbi_country: Mexico

ncbi_isolation_source: feces (Mus musculus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Nalgonda

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: ICAR Indian Institute of Rice Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: USA

ncbi_submitter: USDA


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: EMG


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Hapalosiphonaceae cyanobacterium

ncbi_submitter: Stockholm University


ncbi_country: Thailand

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S121

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S121


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada

ncbi_organism_name: Prescottella equi

ncbi_submitter: The University of Edinburgh


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium tertium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Brown University


ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. PDM30

ncbi_submitter: University of Chicago


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: traditional yogurt

ncbi_organism_name: Weissella sagaensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: Germany

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Rickettsia bellii str. RML Mogi

ncbi_strain_identifiers: RML Mogi

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__belli group;s__Rickettsia bellii;x__Rickettsia bellii str. RML Mogi


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: EMG


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter sp. TUM15071

ncbi_submitter: Toho University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Quzhou Hospital Affiliated to Wenzhou Medical University (Quzhou People's Hospital)


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Italy

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_isolate: Faeces

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Faeces;STp 16;STw 10;H48;O2:H4;NILS11:A

ncbi_submitter: UMR 1137 IAME


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_isolation_source: stool sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC042207

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis OFXR-22

ncbi_submitter: Broad Institute


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_country: Pacific Ocean: South Pacific Gyre

ncbi_isolation_source: seawater

ncbi_organism_name: Leucothrix pacifica

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: China: Nanjing

ncbi_isolation_source: clinically healthy pig

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Shanghai

ncbi_isolation_source: central venous catheter

ncbi_submitter: Xinhua Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_submitter: Singapore General Hospital


ncbi_organism_name: uncultured Nitratifractor sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Universidad de La Rioja


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_organism_name: Pseudomonas sp. NPDC047961

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mediterraneibacter gnavus


ncbi_organism_name: Terrimicrobiaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Rhodanobacter sp. Root179

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Cornell University


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yamaguchi University


ncbi_organism_name: Dietzia maris

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: ground chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: China: Henan

ncbi_isolation_source: patient

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Yangzhou University


ncbi_country: Papua New Guinea

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Rutgers University


ncbi_country: Kenya

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_country: USA: KY

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: China: Changzhou;Jiangsu

ncbi_isolation_source: Aerobic activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: South China University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Sichuang

ncbi_isolation_source: frozen food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_isolation_source: Seawater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus pseudoporcinus


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Saprospirales bacterium


ncbi_country: Laos

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Boston; MA

ncbi_isolation_source: fluid

ncbi_organism_name: Staphylococcus aureus M1073

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Galway


ncbi_country: South Korea: Ilsan

ncbi_isolation_source: water

ncbi_organism_name: Paenimyroides baculatum

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Germany

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Frankfurt


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: China: Kumtag Desert

ncbi_isolation_source: plant stem

ncbi_organism_name: Acinetobacter sp. 2JN-4

ncbi_submitter: Chinese Academy of Forestry


ncbi_isolation_source: Human feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shenzhen Center for Disease Control and Prevention


ncbi_isolation_source: fecal sample

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium HUM_17


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Odoribacter laneus YIT 12061

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Odoribacteraceae;g__Odoribacter;s__Odoribacter laneus;x__Odoribacter laneus YIT 12061


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: South Korea: Seoul

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Chthonomonadales bacterium


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC


ncbi_country: Russia

ncbi_organism_name: Xanthomonas arboricola 3004

ncbi_submitter: 1Centre "Bioengineering" of Russian Academy of Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Wenzhou medical university


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: DTU-GE


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Missouri; St. Louis

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Washington University School of Medicine


ncbi_submitter: Centre pasteur du Cameroun


ncbi_organism_name: Lachnospiraceae bacterium 10-1


ncbi_organism_name: Streptomyces sp. DG1A-41

ncbi_submitter: Chungnam National University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: SAR202 cluster bacterium bin22

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium bin22


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Poland: farmland in Jasienowka

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: University of Bialystok


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Queensland


ncbi_country: Brazil

ncbi_strain_identifiers: IBSBF 2670

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. IBSBF 2670


ncbi_country: Norway: Tromso

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_strain_identifiers: B

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of Alabama at Birmingham


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chungnam national university


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: lake water

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli

ncbi_submitter: Memorial Sloan Kettering Cancer Center


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0116

ncbi_submitter: Broad Institute


ncbi_organism_name: Collinsella stercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Italy: Ancona

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_organism_name: Romboutsia ilealis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Tang lab


ncbi_country: India

ncbi_isolation_source: Pomegranate plant

ncbi_organism_name: Xanthomonas citri pv. punicae

ncbi_submitter: Central University of Kerala

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. punicae


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coriobacteriaceae bacterium AF16-32LBC

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pneumoniae GA19690

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: California; Fair Oaks

ncbi_isolation_source: fresh water

ncbi_organism_name: Chromobacterium fluminis

ncbi_submitter: Sierra College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_assembly_name: Rumen uncultured genome RUG13059

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Portland State University


ncbi_country: United Arab Emirates

ncbi_isolation_source: petroleum sludge from desert

ncbi_organism_name: Bacillus cereus

ncbi_submitter: United Arab Emirates University


ncbi_organism_name: Salmonella sp. NW1066

ncbi_submitter: Sichuan University


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Lentisphaerales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Curtobacterium sp. SAFR-003

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Salmonella sp. SAL04194

ncbi_submitter: Zhejiang university


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paenibacillus sp. 2RAB27

ncbi_submitter: CCRP


ncbi_organism_name: Tenacibaculum sp. A30

ncbi_submitter: Pukyong National University


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC058828


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: State University of Londrina


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: uncultured Moorellales bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Endomicrobium sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Haemophilus sp.

ncbi_submitter: EMG


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Desulfocapsa sulfexigens

ncbi_submitter: University Duisburg-Essen


ncbi_country: Denmark: Lyngby; Backyard where Pep used to live in Lyngby

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces phaeochromogenes

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptococcus zhangguiae

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Candidatus Caenarcanales bacterium

ncbi_submitter: SCOPE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;c__Vampirovibriophyceae;o__Candidatus Caenarcanales;x__unclassified Candidatus Caenarcanales;s__Candidatus Caenarcanales bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: environment

ncbi_organism_name: Vibrio parahaemolyticus S172

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S172


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F20105

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Yangzhou University


ncbi_isolation_source: leaves

ncbi_organism_name: Methylobacterium sp. WL1

ncbi_submitter: Aarhus University


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Deakin University


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Utrecht University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: Qatar

ncbi_isolation_source: urine

ncbi_submitter: Qatar University


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Capnocytophaga gingivalis

ncbi_submitter: EMG


ncbi_country: China:Hong Kong

ncbi_isolation_source: not known


ncbi_country: Germany: Hamburg

ncbi_isolation_source: central venous catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteriovoracaceae bacterium


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Belgium

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus S69_POEL

ncbi_submitter: Broad Institute


ncbi_isolation_source: tracheal secretion

ncbi_submitter: The First Affiliated Hospital, College of Medicine, Zhejiang University


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: respiratory tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Veillonella sp.


ncbi_organism_name: Nocardia sp. NPDC050718

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Peru

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: China: Beijing

ncbi_isolation_source: soil

ncbi_organism_name: Parageobacillus thermoglucosidasius

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Reyranella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Integrative Pharmacogenomics Institute (iPROMISE)


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_assembly_name: Chelatococcus sp. WSG2-a

ncbi_isolation_source: Sludge ENVO:00002044

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Yale University


ncbi_country: Canada: British Columbia

ncbi_organism_name: Erwinia amylovora


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_isolation_source: fecal sample

ncbi_organism_name: Morganella morganii

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: Cybister brevis

ncbi_organism_name: Leucobacter insecticola

ncbi_submitter: Kyung Hee University


ncbi_country: USA: Georgia

ncbi_isolation_source: week A7 calf 167 isolate 2

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_country: China: Zhejiang Province; Ximen Island

ncbi_isolation_source: seawater at sediment depth

ncbi_organism_name: Pseudoalteromonas sp. T1lg22

ncbi_submitter: Zhejiang University of Technology


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium lentis

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Denmark: Viborg

ncbi_isolation_source: activated sludge from Vibo_18-Q3-R45-57

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: San Diego; CA

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Australia

ncbi_isolation_source: Carriage sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sydney


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Kiel University


ncbi_organism_name: Rickettsia sibirica

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: wheat sourdough

ncbi_organism_name: Furfurilactobacillus siliginis

ncbi_submitter: Shanghai Majorbio


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_submitter: ANSES


ncbi_isolate: SPRUCE 37

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 37

ncbi_submitter: Georgia Institute of Technology


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Zhengzhou University


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Portugal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: MD

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: DMB SH20023

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_isolation_source: lymph node

ncbi_submitter: University of Wisconsin- Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis;x__Mycobacterium avium subsp. paratuberculosis 1281


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R811;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Netherlands: Olburgen

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; full scale (600m3) reactor for the removal of ammonium from wastewater from the potato processing industry

ncbi_organism_name: Microgenomates bacterium OLB22

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Microgenomates;s__Microgenomates bacterium OLB22


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: School of biotechnology, International University, Vietnam National University,

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Enterococcus sp. DIV0561

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: uncultured Flavihumibacter sp.

ncbi_submitter: Spribille Lab


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Austria: lake near Mattsee

ncbi_isolation_source: Lake Egelsee

ncbi_organism_name: Aquirufa lenticrescens

ncbi_submitter: University of Innsbruck


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_isolation_source: human gut

ncbi_organism_name: Campylobacter upsaliensis


ncbi_organism_name: uncultured Capnocytophaga sp.


ncbi_country: United Kingdom

ncbi_submitter: SC


ncbi_country: USA: Montana

ncbi_organism_name: Enterococcus mundtii


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Czech Republic

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: China,Shandong University,Cheloo College of Medicine,Qilu Hospital


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Ottawa


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-5436

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: Australia

ncbi_isolation_source: wet; sandy soil from a melioidosis outbreak

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Menzies School of Health Research


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Christian Medical College


ncbi_country: USA: New York

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_submitter: EMG


ncbi_country: Australia: Adelaide

ncbi_isolation_source: Wastewater

ncbi_organism_name: Acinetobacter sp. 5862

ncbi_submitter: University of South Australia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lausanne University Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Maryland

ncbi_isolation_source: Fish tissue

ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: University of Georgia


ncbi_country: Hungary

ncbi_isolate: bin D_3_2

ncbi_isolation_source: Diclofenac amended enrichment

ncbi_organism_name: Zavarzinia sp.

ncbi_strain_identifiers: bin D_3_2

ncbi_submitter: National University of Agriculture and Life Sciences


ncbi_country: Netherlands

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus

ncbi_submitter: TIFN


ncbi_assembly_name: Rumen uncultured genome RUG12041

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Madison; WI

ncbi_isolation_source: garden soil

ncbi_organism_name: Paenibacillus polymyxa

ncbi_strain_identifiers: DSM 365

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Roseiarcus sp.

ncbi_submitter: Colorado State University


ncbi_country: China

ncbi_isolation_source: Sepsis

ncbi_submitter: University of West London


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: wound

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: human gut

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_isolation_source: sludge from WWTP

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_isolation_source: placenta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: United State Department of Agriculture


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Duke University


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Haemophilus sp. 27098_8_127

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_country: Russia

ncbi_isolation_source: cloacal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monika Dolejska Antibiotic resistance group- UVPS


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: South Korea: Incheon

ncbi_isolation_source: Late-instar larval gut

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Seoul National University


ncbi_organism_name: Clostridium baratii

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: AAFC


ncbi_country: Canada: Vancouver

ncbi_isolation_source: maternal vaginal swab fluid of a 36 year-old woman on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: EPFL


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Magnetovibrio sp.

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_organism_name: Candidatus Peribacter riflensis

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__Candidatus Peribacter;s__Candidatus Peribacter riflensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;g__Candidatus Peribacter;s__Candidatus Peribacter riflensis


ncbi_country: Portugal

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFOXYB12_FULL_58_10


ncbi_country: France: Besancon

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Kaistella palustris DSM 21579

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;x__Chryseobacterium group;g__Kaistella;s__Kaistella palustris;x__Kaistella palustris DSM 21579


ncbi_organism_name: Shewanella algae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. SAL04164

ncbi_submitter: Zhejiang university


ncbi_organism_name: Streptomyces sp. CA-251251

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Nocardia sp. NPDC056541

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas sp. IT-P171

ncbi_submitter: faculty of agriculture, university of belgrade


ncbi_organism_name: Streptomyces echinatus


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Caulobacter sp. UNC279MFTsu5.1

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: [Ruminococcus] torques


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: AGROSAVIA


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tsinghua University


ncbi_country: USA: San Fransisco

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Streptococcus agalactiae LMG 14747

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H2463

ncbi_submitter: Broad Institute


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: intestinal content

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: ChinaCDC


ncbi_country: USA

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute for Communicable Disease


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Rickettsia helvetica

ncbi_submitter: National Institute of Public Health and Environment (RIVM)


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B021;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Thailand

ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: China

ncbi_isolation_source: pickle

ncbi_organism_name: Lacticaseibacillus sp. 53-4

ncbi_submitter: Northeast Agricultural University


ncbi_country: Malaysia: Johor Bahru

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Malaya


ncbi_country: USA: PA

ncbi_isolation_source: feces (Sus scrofa)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Granulicatella sp.

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: University Medical Center Goettingen


ncbi_isolation_source: bone

ncbi_organism_name: Acinetobacter baumannii AB_1650-8

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: meat

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_assembly_name: IMG-taxon 2617270918 annotated assembly

ncbi_organism_name: Filomicrobium insigne

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Japan:Yamagawa Bay

ncbi_isolation_source: marine sediment

ncbi_organism_name: Thermanaeromonas sp. C210

ncbi_submitter: Laboratory of Marine Microbiology, Graduate School of Agriculture, Kyoto University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_strain_identifiers: Ngtc NS 16

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: rectal swab

ncbi_submitter: University Medical Center Groningen


ncbi_assembly_name: IMG-taxon 2671180023 annotated assembly

ncbi_organism_name: Rhizobium tibeticum


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Singapore

ncbi_isolation_source: fecal sample PR121 from 1 month old male Malay infant; vaginally delivered; breastfeeding and formula feeding at 1 month of age; healthy

ncbi_organism_name: Bifidobacterium longum


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA7455


ncbi_country: China: Qinghai Province

ncbi_organism_name: Arthrobacter jiangjiafuii

ncbi_submitter: China CDC


ncbi_country: Czech Republic

ncbi_isolation_source: spleen

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: freshwater lake; 2 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: DC

ncbi_isolation_source: Stool

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_country: Taiwan

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolate: AOP5_A1_surf _bin _21

ncbi_organism_name: Serratia proteamaculans

ncbi_strain_identifiers: AOP5_A1_surf _bin _21

ncbi_submitter: Genoscope


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA: Pacific; Franklin County; Missouri

ncbi_isolation_source: Kitchen countertop

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: Washington University in St. Louis


ncbi_assembly_name: Rumen uncultured genome RUG12207

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Beijing

ncbi_isolation_source: pork

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pontibacter virosus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Zhuozhou

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: China Agricultural University


ncbi_country: USSR

ncbi_organism_name: Serratia plymuthica

ncbi_strain_identifiers: ICMP 9395


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Furfurilactobacillus sp.


ncbi_country: Antarctica: James Ross Island

ncbi_isolation_source: water; temporary lake nearby Big Lachman lake

ncbi_organism_name: Massilia scottii

ncbi_submitter: Masaryk University


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Bilophila sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Tokyo Institute of Technology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Brazil: Rio de Janeiro; Arraial do Cabo

ncbi_isolation_source: skin

ncbi_organism_name: Vibrio fluminensis

ncbi_submitter: UFRJ


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China:Liaoning Province

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: China


ncbi_country: Czech Republic: Prague

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Charles University in Pilsen


ncbi_country: Greece: Crete

ncbi_isolation_source: feces with plant residues

ncbi_organism_name: Dawidia cretensis

ncbi_submitter: Helmholtz Center for Infection Research


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Kangwon National University


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University