ncbi_country: USA: Oregon

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Washington State University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Phocaeicola vulgatus


gtdb_representative: t

ncbi_country: Iceland: Eldgja; brink

ncbi_isolation_source: thallus

ncbi_submitter: University of Iceland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;x__Nostoc cyanobionts;s__Nostoc sp. 'Peltigera membranacea cyanobiont' 232


ncbi_assembly_level: Contig

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Apibacter raozihei

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_assembly_level: Chromosome

ncbi_organism_name: Candidatus Azophilus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Candidatus Azotimanducaceae;g__Candidatus Azophilus;x__unclassified Candidatus Azophilus;s__Candidatus Azophilus sp.


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Desulfobacula sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_isolate: AOP44_A1_surf _bin _7

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP44_A1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_assembly_level: Complete Genome

ncbi_isolate: wNi

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: wNi

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_organism_name: Caenimonas koreensis

ncbi_submitter: Nanjing University


ncbi_organism_name: Cellulomonas sp. McL0617

ncbi_submitter: New Zealand Forest Research Institute


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_genome_category: derived from single cell

ncbi_organism_name: Escherichia coli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_submitter: The University of Texas at San Antonio


ncbi_organism_name: uncultured bacterium


ncbi_country: China

ncbi_isolation_source: Urology Surgery

ncbi_submitter: Guangzhou Medical University


ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Lanzhou University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: Arctic Ocean: Gakkel Ridge; Loki s castle

ncbi_isolation_source: marine sediment core GS08_GC12; 126 cmbsf

ncbi_organism_name: Candidatus Anoxychlamydiales bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Candidatus Anoxychlamydiales;x__unclassified Candidatus Anoxychlamydiales;s__Candidatus Anoxychlamydiales bacterium


ncbi_isolation_source: Cloacal swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: human gut


ncbi_isolation_source: pig gut metagenome


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-233

ncbi_submitter: Broad Institute


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_submitter: University of Alberta


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_submitter: Harvard University


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Tamazula River; Imala

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Loyola University Chicago


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_organism_name: Microcystis aeruginosa

ncbi_submitter: University of Michigan


ncbi_country: Tunisia: Sousse

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii


ncbi_isolation_source: rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


gtdb_type_species_of_genus: t

ncbi_country: South Korea: Jeju island

ncbi_isolation_source: seawater

ncbi_organism_name: Aliishimia ponticola

ncbi_refseq_category: reference genome

ncbi_submitter: Sungkyunkwan University

ncbi_type_material_designation: assembly from type material


ncbi_country: Czech Republic: Kacice

ncbi_submitter: University of Veterinary Sciences


ncbi_country: Mali: Bamako

ncbi_isolation_source: feces

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W38597

ncbi_submitter: Broad Institute


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0301867.1

ncbi_submitter: IGS


ncbi_country: China

ncbi_isolation_source: duck organ

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Berta


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Alistipes finegoldii


ncbi_submitter: Soochow University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: freshwater MAG --- Ki1-0-7m_bin-0142

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lentibacillus cibarius

ncbi_submitter: World Institute of Kimchi


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides finegoldii DSM 17565

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides finegoldii;x__Bacteroides finegoldii DSM 17565


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: USA

ncbi_organism_name: Candidatus Rhodoblastus alkanivorans

ncbi_submitter: University of East Anglia


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_country: Japan: Okinawa Trough; Pacific Ocean

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Netherlands: Rotterdam

ncbi_organism_name: Klebsiella pneumoniae 1191100241

ncbi_submitter: Life Technologies


ncbi_assembly_name: Rumen uncultured genome RUG12993

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-0066

ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3623

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3623


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Chthoniobacterales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus albus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: India: Kolkata

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Anaerobutyricum soehngenii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Vienna


ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_strain_identifiers: HUMV 1;15

ncbi_submitter: University of Oviedo


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: National Research Council Canada


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: uncultured Finegoldia sp.

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Kenya

ncbi_isolation_source: blood

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: USA: Philadelphia; PA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pennsylvania


ncbi_country: Paraguay: Paraguari

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_assembly_name: Rumen uncultured genome RUG101

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Xanthomonas cannabis

ncbi_submitter: NSW Department of Primary Industries


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: India

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Petrotogaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Calgary


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: South Korea: Beolgyo; southern coast

ncbi_isolation_source: tidal mudflat

ncbi_organism_name: Flagellimonas beolgyonensis

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Mitsuokella multacida

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-1017

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sterolibacterium sp.

ncbi_submitter: BILS


ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_country: Germany

ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_country: Tanzania

ncbi_isolation_source: Nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: desert regolith

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Janthinobacterium sp. K2C7

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Italy: Trento

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Helicobacter pylori SA146A

ncbi_submitter: MHH


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Gold and copper mine

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: Russia: Krasnodar region

ncbi_isolation_source: Rizosphere soil sample

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Agrofirma Urozhaynaya LLC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_organism_name: Mycobacterium sp. HOS206

ncbi_submitter: AIIMS, New Delhi


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Bulgaria: Sofia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Halieaceae bacterium

ncbi_submitter: EMG


ncbi_country: Pakistan: Khyber Pakhtunkhwa; Peshawar

ncbi_isolation_source: vaccine strain for haemorrhagic septicaemia

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_strain_identifiers: PVAcc

ncbi_submitter: Murdoch University


ncbi_organism_name: uncultured Corynebacterium sp.


ncbi_country: Germany: Erlangen

ncbi_isolation_source: perianal skin [UBERON:0012336]

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Brevundimonas diminuta


ncbi_isolation_source: Bovine feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: NORWEGIAN VETERINARY INSTITUTE


ncbi_country: China: Tai an

ncbi_submitter: Shandong Agricultural University


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Actinoplanes octamycinicus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF02-29

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: [Eubacterium] saphenum


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0390

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Brachyspira aalborgi


ncbi_country: Sweden: Henan

ncbi_isolation_source: uterus of a maiden mare

ncbi_organism_name: Corynebacterium uterequi

ncbi_submitter: Bielefeld University


ncbi_country: India: Maraikayar Pattinam

ncbi_organism_name: Fusobacterium sp. JB021

ncbi_submitter: JNTUH


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Secundilactobacillus malefermentans

ncbi_submitter: World Institute of Kimchi


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Vibrio campbellii ATCC BAA-1116

ncbi_strain_identifiers: ATCC BAA-1116

ncbi_submitter: Naval Research Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio campbellii;x__Vibrio campbellii ATCC BAA-1116


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: BPH

ncbi_country: Australia

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Burkholderia pseudomallei MSHR983

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: ABKXA

ncbi_submitter: NHGRI/NIH


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0070


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Portugal

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: ITQB


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- Umea_bin-03095

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_submitter: The University of Auckland


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: University Hospital Center and University of Lausanne


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Plague Control Research Institute of Siberia and Far East


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Cryptobacteroides bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides bacterium


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Peribacillus muralis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yonsei University


ncbi_country: USA: California; Cedars Spring

ncbi_isolation_source: spring water

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_country: USA: California; Middletown

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolate: AOP31_B2_surf _bin _24

ncbi_organism_name: Proteus vulgaris

ncbi_strain_identifiers: AOP31_B2_surf _bin _24

ncbi_submitter: Genoscope


ncbi_organism_name: Streptomyces sp. NPDC048734

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_submitter: The Ohio State University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. 2010C-3871


ncbi_country: India

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Marispirochaeta associata

ncbi_submitter: JNTU Hyderabad


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: South Africa

ncbi_isolation_source: Fresh produce

ncbi_strain_identifiers: UPMP 818

ncbi_submitter: University of Pretoria


ncbi_assembly_name: LOGT-cMAG

ncbi_isolate: LOGT-cMAG

ncbi_organism_name: Candidatus Electronema halotolerans

ncbi_strain_identifiers: LOGT-cMAG

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: IL; Urbana

ncbi_organism_name: Streptomyces sp. MMG1064

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Spain: Valencia

ncbi_isolation_source: Biofilm clogging water pumps in ice machines

ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Darwin Bioprospecting Excellence


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: Bacillus sp. Y1

ncbi_submitter: National Cheng Kung University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Y1


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: Hawaii

ncbi_isolation_source: Pineapples

ncbi_organism_name: Pantoea stewartii subsp. indologenes

ncbi_submitter: University of Rome "La Sapienza"


ncbi_country: South Korea: Jinju

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Muribacter muris

ncbi_submitter: King's College London


ncbi_submitter: RIVM


ncbi_organism_name: Fusobacterium vincentii

ncbi_submitter: SC

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Micrococcus yunnanensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: University of California Berkeley


ncbi_isolation_source: Urine

ncbi_organism_name: Haemophilus sp. Marseille-Q0026

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Egypt

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Corynebacterium sp. HMSC08A12

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Ketogulonicigenium vulgare WSH-001

ncbi_submitter: Jiangnan University


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: Anode biofilm

ncbi_organism_name: Propionibacteriaceae bacterium UBA7704

ncbi_submitter: University of Queensland


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: China

ncbi_isolation_source: marine solar saltern

ncbi_organism_name: Marinobacter vulgaris

ncbi_submitter: Shandong University at weihai


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_strain_identifiers: CEMTC 2355

ncbi_submitter: Institute of Chemical Biology and Fundamental Medicine- SB RAS


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium RIFCSPLOWO2_02_FULL_55_36


ncbi_organism_name: Neisseria maigaei

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Myroides odoratus

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Romania

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis 2099HD

ncbi_submitter: Broad Institute


ncbi_country: USA: San Diego County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Northumbria University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: baby feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Tianjin University of Science and Technology


ncbi_organism_name: Capsulimonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Corynebacterium sp. HMSC073B01

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Aminobacterium mobile

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Bacillaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: EMG


ncbi_country: Japan: Miyagi

ncbi_organism_name: Pseudomonas cyclaminis

ncbi_submitter: National Agriculture and Food Research Organization (NARO)


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Bodega Bay; California

ncbi_isolation_source: seagrass sediment

ncbi_organism_name: Colwellia sp. UCD-KL20

ncbi_submitter: UC Davis


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Physcousia equi

ncbi_submitter: Quadram Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Candidatus Physcousia;s__Candidatus Physcousia equi


ncbi_organism_name: Paenibacillus baekrokdamisoli

ncbi_strain_identifiers: CECT 8890

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: EPFL


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Segatella copri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_country: Canada: Alberta

ncbi_isolation_source: Retail ground beef

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: chilled chicken breast fillet

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Malonomonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Portugal: Oporto

ncbi_isolation_source: Raw-frozen dog food

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_organism_name: Salmonella sp. NW323

ncbi_submitter: Sichuan University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Planctomycetota bacterium


ncbi_organism_name: Thalassolituus oleivorans

ncbi_submitter: University of East Anglia


ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: uncultured Ideonella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: Penn State University


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Lachnospira eligens


ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces chryseus

ncbi_submitter: University of Newcastle


ncbi_country: Canada: British Columbia; Pacific Ocean; Barkley Sound

ncbi_isolation_source: marine sediment

ncbi_organism_name: Salinispora arenicola

ncbi_submitter: University of British Columbia


ncbi_country: Peru

ncbi_organism_name: Vibrio cholerae C6706

ncbi_submitter: EPFL


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: SurvCARE


ncbi_country: Canada: Ontario

ncbi_isolation_source: beef trim

ncbi_organism_name: Moellerella wisconsensis

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: University of Queensland


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Montreal


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Kandleria sp. UBA3298


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chick-box-paper

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Freie Universitaet Berlin


ncbi_country: China: Hunan

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: North-west University


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Caldicellulosiruptor bescii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Jiangsu

ncbi_isolation_source: anaerobic fermentation tank

ncbi_organism_name: Sterolibacterium sp.

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Indonesia

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Health Canada


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Segatella hominis

ncbi_submitter: Helmholtz Centre for Infection Research - HZI


ncbi_country: USA: NY

ncbi_isolation_source: ear canal

ncbi_organism_name: Actinomyces sp. 186855

ncbi_submitter: Cornell University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: IMG-taxon 2693429894 annotated assembly

ncbi_organism_name: Salipiger profundus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomycetota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Haemophilus influenzae PittII

ncbi_strain_identifiers: PittII

ncbi_submitter: Center for Genomic Sciences, Allegheny-Singer Research Institute


ncbi_isolation_source: BOVINE FECES

ncbi_organism_name: Escherichia coli

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romana


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Oceanobacillus oncorhynchi

ncbi_submitter: URMITE


ncbi_organism_name: uncultured Herbinix sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Weihai

ncbi_isolation_source: offshore sediment

ncbi_organism_name: Aliiroseovarius sp. F47248L

ncbi_submitter: Shandong University,Weihai


ncbi_country: China

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Connecticut Graf Lab


ncbi_organism_name: Salinimicrobium xinjiangense DSM 19287

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Candidatus Oxydemutatoraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Ireland: Dublin

ncbi_isolation_source: periorbital

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Trinity College Dublin


ncbi_organism_name: Streptomyces sp. NPDC017988

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Winkia sp. UMB750B

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Miami

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Pittsburgh


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 724

ncbi_organism_name: Prevotellaceae bacterium

ncbi_strain_identifiers: CIM:MAG 724

ncbi_submitter: Mayo Clinic


ncbi_country: Canada

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: FDA/CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli O157:H7 str. 08-4529

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 08-4529


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: France

ncbi_isolation_source: soil

ncbi_organism_name: Buttiauxella ferragutiae ATCC 51602

ncbi_submitter: UW-GEL (University of Wisconsin - Genome Evolution Laboratory)


ncbi_country: Egypt: Cairo

ncbi_isolation_source: blood

ncbi_submitter: October University for Modern Sciences and Arts


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA175

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Microbial Resistance Group


ncbi_country: Japan: Tokyo

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA: Kansas

ncbi_isolation_source: mucus

ncbi_submitter: USDA-ARS-USMARC


ncbi_organism_name: Bradyrhizobium mercantei

ncbi_strain_identifiers: SEMIA 6399

ncbi_submitter: Embrapa


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Citrobacter youngae

ncbi_submitter: Kenya Medical Research Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Escherichia coli O157:H7 str. EDL933

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. EDL933


ncbi_isolation_source: rhizosphere soil culture M59

ncbi_organism_name: Cupriavidus sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA: Long Key; Florida

ncbi_isolation_source: marine

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Chandigarh

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Estonia

ncbi_isolation_source: ear secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CSIR-National Institute of Oceanography(CSIR-NIO), Regional Centre, Mumbai, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Chicago


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: USA: VA

ncbi_isolation_source: Environment

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CFSAN000833


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Ireland

ncbi_isolation_source: meat

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University College Cork


ncbi_organism_name: Siminovitchia sediminis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Haiti

ncbi_organism_name: Shigella flexneri Y

ncbi_submitter: U.S. Food and Drug Administration


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMG


ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas gingeri

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_isolation_source: Mushroom

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_country: Italy

ncbi_isolation_source: Pastries

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_country: Australia: Clermont; QLD

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Stappia sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Marinactinospora thermotolerans

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: QuantHealth


ncbi_organism_name: Brachybacterium alimentarium

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Flavobacterium ginsenosidimutans

ncbi_submitter: College of Resources and Environmental science


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- Loc090721-1m_bin-430

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: SAR202 cluster bacterium AG-430-C21

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium AG-430-C21


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Microbacterium pumilum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Japan: Okinawa Prefecture

ncbi_organism_name: Pseudomonas syringae pv. daphniphylli

ncbi_strain_identifiers: ICMP 9757

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. daphniphylli


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-0136

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Animal Husbandry and Veterinary Institute


ncbi_country: Germany

ncbi_organism_name: Domibacillus aminovorans

ncbi_submitter: CSIR-Institute of Mircrobial Technology


ncbi_country: USA: Seattle

ncbi_isolation_source: Wound Right Shoulder Skin Non operative

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_assembly_name: Rumen uncultured genome RUG13911

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_country: Turkey

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Rhizobium leguminosarum bv. viciae TOM

ncbi_strain_identifiers: TOM

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium leguminosarum;x__Rhizobium leguminosarum bv. viciae;x__Rhizobium leguminosarum bv. viciae TOM


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: KwaZulu-Natal

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: China: Guangzhou; Guangdong

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhongshan School of Medicine, Sun Yat-sen University


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: URMITE


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Calgary

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_country: Japan:Hokkaido; Nopporo Forest Park

ncbi_isolation_source: soil

ncbi_organism_name: Desulfocucumis palustris

ncbi_submitter: Institute of Low Temperature Science, Hokkaido University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: France

ncbi_isolation_source: formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermodesulfovibrio sp.

ncbi_submitter: Portland State University


ncbi_country: Taiwan

ncbi_isolation_source: seawater

ncbi_organism_name: Paracoccus aurantiacus

ncbi_submitter: Xiamen University


ncbi_country: Spain: southern edge of the Saharan debris flow near the Canary Islands

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Streptomyces sp. NTK 937

ncbi_strain_identifiers: NTK 937

ncbi_submitter: Universidad de Oviedo


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Pacific Ocean: East China Sea

ncbi_organism_name: Synechococcus sp. KORDI-49

ncbi_strain_identifiers: KORDI 49

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_country: USA

ncbi_isolation_source: Tissues

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Wilmar International Limited


ncbi_isolate: Clinical

ncbi_isolation_source: Sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Clinical

ncbi_submitter: newcastle university


ncbi_country: India: West Bengal

ncbi_isolation_source: root

ncbi_organism_name: Bradyrhizobium sp. WBOS07

ncbi_submitter: University of Calcutta


ncbi_country: USA: New York

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pakistan

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: FDA


ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Oceanococcus sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Alloyangia sp. H15

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_country: China: Wendeng

ncbi_organism_name: Persicimonas caeni

ncbi_submitter: Shandong University in Weihai


ncbi_isolation_source: fecal sample

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Chicago


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Sungiibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Sungiibacteriota;s__Candidatus Sungiibacteriota bacterium


ncbi_submitter: Sichuan Agricultural University


ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_organism_name: Methylocystis echinoides

ncbi_submitter: Cann Lab: University of Illinois at Urbana-Champaign


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Singapore

ncbi_isolation_source: patient from the cardio-thoracic ICU ward in National University Hospital

ncbi_organism_name: Elizabethkingia anophelis NUHP3

ncbi_submitter: SCELSE


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangzhou Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Devosia sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Laos

ncbi_isolation_source: chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: Germany

ncbi_organism_name: Vibrio cincinnatiensis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Czech Republic: Klicava reservoir

ncbi_isolation_source: drinking water reservoir

ncbi_organism_name: Limnohabitans sp. 2KL-17

ncbi_submitter: Biology Centre CAS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: EMG


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC024017

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB245a_519A13

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_38_26


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: Canada: Guelph

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis cynos

ncbi_submitter: University of Guelph


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: mBioClim


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_assembly_name: TPELB

ncbi_organism_name: Terrisporobacter petrolearius

ncbi_strain_identifiers: ELB

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: USA: Hickory Corners; Michigan

ncbi_isolation_source: leaf-associated phyllosphere

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Iowa State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Bacteroides ovatus


ncbi_organism_name: Salmonella sp. NW739


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: First Affiliated Hospital of Guangzhou Medical University,Guangzhou Institute of Respiratory Health,


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Johannes Gutenberg-University


ncbi_country: Czech Republic: Rimov reservoir

ncbi_isolation_source: freshwater reservoir; 30 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: East China Normal University


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium


ncbi_organism_name: bacterium D16-29

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Respiratory infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC002490

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: dairy milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: McGill University


ncbi_organism_name: [Eubacterium] brachy


ncbi_country: Ireland

ncbi_isolation_source: Bronchoalveolar lavage or sputum

ncbi_organism_name: Mycolicibacterium goodii

ncbi_submitter: St. James's Hospital


ncbi_country: Italy

ncbi_isolation_source: UHT-milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Amycolatopsis sp. NPDC051071


ncbi_organism_name: Cellulosimicrobium cellulans

ncbi_submitter: Shandong First Medical University


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexi bacterium UBA5183

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium UBA5183


ncbi_country: China: Shanghai

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: BGI


ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: ARRIAM


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Chile: Region Metropolitana

ncbi_isolation_source: walnut tree

ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: FDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rhizobium sp. BK538

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Hydrotalea flava

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EMG


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_assembly_name: Rumen uncultured genome RUG12921

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Shenyang

ncbi_isolation_source: oropharynx

ncbi_organism_name: Streptococcus shenyangsis

ncbi_submitter: Shenyang Medical College


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: USA: Nashville; Tennessee

ncbi_isolation_source: Healthy infant urine

ncbi_organism_name: Actinotignum sanguinis

ncbi_submitter: Vanderbilt University Medical Center


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institutes of Food and Drug Control


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: United Kingdom

ncbi_organism_name: Acinetobacter sp. SFB

ncbi_strain_identifiers: SFB

ncbi_submitter: University of aberdeen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter Taxon 24;x__Acinetobacter Taxon 24C;s__Acinetobacter sp. SFB


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bicetre hospital


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Pseudoxanthomonas sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing macro&micro-test Bio-Tech Co.Ltd


ncbi_organism_name: Pseudonocardiaceae bacterium


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: PA

ncbi_isolation_source: lung (Ovis aries)

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: SurvCARE


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Nocardia farcinica IFM 10152

ncbi_submitter: Department of Bioactive Molecules, National Institute of Infectious Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Nocardia;s__Nocardia farcinica;x__Nocardia farcinica IFM 10152


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli MP020980.1

ncbi_submitter: IGS


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: pork sausage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_organism_name: Actinomadura meridiana

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: India

ncbi_organism_name: Mycolicibacter heraklionensis

ncbi_submitter: JCVI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Ontario

ncbi_isolation_source: bone

ncbi_organism_name: Eikenella sp. NML070372

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Kenya

ncbi_isolation_source: chemical mutagenesis laboratory

ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capripneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AK

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: Guangxi

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Chicago


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_country: China

ncbi_isolation_source: sea water

ncbi_organism_name: Meridianimarinicoccus roseus

ncbi_submitter: Zhejiang University


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Chryseobacterium sp. E1

ncbi_submitter: Korea University


ncbi_submitter: EMG


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Caloramator sp.

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_assembly_name: Xanthomonas sp. CPBF 796 hybrid assembly

ncbi_isolate: Xanthomonas sp. CPBF 796

ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: Xanthomonas sp. CPBF 796

ncbi_submitter: CIBIO-Inbio


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Xiaoshi Island; Weihai

ncbi_isolation_source: red algae

ncbi_organism_name: Psychroserpens luteolus

ncbi_submitter: shandong university


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Hangzhou

ncbi_isolation_source: Ascites

ncbi_organism_name: Enterobacter hormaechei


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: Urine

ncbi_organism_name: Leptospira santarosai

ncbi_submitter: Universidade Federal de Pelotas


ncbi_submitter: University College Dublin


ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Hong Kong

ncbi_isolation_source: Wound

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Desulfovibrio falkowii

ncbi_submitter: Nagoya University school of Medicine


ncbi_organism_name: Enterococcus italicus

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_submitter: Monash University


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Janibacter sp. G368

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: University of East Anglia


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Salmonella sp. NW830

ncbi_submitter: Sichuan University


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Aggregatibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


ncbi_country: Bangladesh: Mathbaria

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Yugoslavia

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_strain_identifiers: CFBP 8163

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: rock porewater

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWC1_44_10


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Cyanide and thiocyanate bioreactor

ncbi_organism_name: Lautropia sp. SCN 70-15


ncbi_organism_name: Escherichia coli KTE36

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: IZLSLER


ncbi_country: China: Guangxi

ncbi_isolation_source: diarrhea from outbreaks of food poisoning

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H3033


ncbi_isolation_source: soil

ncbi_organism_name: Pseudonocardia alaniniphila

ncbi_submitter: Tarim University


ncbi_isolation_source: marine water

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: chicken breast

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Washington


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Marifrigoribacter;x__unclassified Candidatus Marifrigoribacter;s__Candidatus Marifrigoribacter sp. Uisw_064


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Universidade Federal do Rio de Janeiro

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG2

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Propionivibrio sp.

ncbi_strain_identifiers: labscale reactor_MAG2

ncbi_submitter: TU Delft


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hopital Bicetre


ncbi_organism_name: Anaerotignum lactatifermentans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Colorado;Grand_Junction

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: marine college, shandong university

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: USA: California

ncbi_organism_name: Campylobacter vicugnae

ncbi_submitter: USDA


ncbi_isolation_source: fermented milk

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: harbin institute of technology


ncbi_isolate: Acc-IF

ncbi_isolation_source: CANDO+P Bioreactor

ncbi_organism_name: Paracoccaceae bacterium

ncbi_strain_identifiers: Acc-IF

ncbi_submitter: Northwestern University


ncbi_organism_name: Desulfovibrio piger


ncbi_organism_name: Neisseria gonorrhoeae PID332

ncbi_submitter: Broad Institute


ncbi_organism_name: Paramuribaculum intestinale


ncbi_assembly_name: Rumen uncultured genome RUG510

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China:Guangdong province

ncbi_isolation_source: Chicken fecal

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Gallionellales bacterium GWA2_54_124

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Svalbard: Norway

ncbi_isolation_source: seawater

ncbi_organism_name: Planktotalea arctica

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_organism_name: Blautia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Nepal: Jomson

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Holdemanella biformis

ncbi_submitter: BGI


ncbi_organism_name: Campylobacter sp. RM12654

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: anode biofilm in microbial fuel cells

ncbi_organism_name: Desulfobulbaceae bacterium DB1

ncbi_submitter: J Craig Venter Institute


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Dyadobacter pollutisoli

ncbi_submitter: Chung-Ang university