ncbi_country: Russia: Kazan

ncbi_organism_name: Acholeplasma laidlawii

ncbi_submitter: Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Estonia

ncbi_genome_representation: full

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_country: Australia: Heron Island

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Brevibacterium sp. FAM 24630

ncbi_submitter: Agroscope


ncbi_country: USA: New Hampshire

ncbi_isolation_source: transverse colon lumen

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: Washington State University Vancouver


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: University of Malaya


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Potomac River; Washington; DC

ncbi_isolation_source: river sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Naval Research Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Leeuwenhoekiella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Clostridioides difficile DA00244

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Czech Republic: Collaboarting Laboratory

ncbi_isolation_source: midgut tissue

ncbi_organism_name: Francisella endosymbiont of Ornithodoros moubata

ncbi_strain_identifiers: FLE-Om

ncbi_submitter: Portland State University


ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


gtdb_type_species_of_genus: t

ncbi_country: South Korea

ncbi_isolation_source: sediment core

ncbi_organism_name: Tianweitania sediminis

ncbi_refseq_category: reference genome

ncbi_submitter: Dongguk University, Biomedi Campus

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Complete Genome

ncbi_country: USA: New York City

ncbi_isolation_source: human blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Mount Sinai School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Ethanoligenens sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp.


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: EPEC 1150

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: Unkown Streptomycetaceae AM_0118

ncbi_organism_name: Streptomycetaceae bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_country: Kyrgyzstan: Talas district

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute 'Microbe'


ncbi_organism_name: Ruminococcus bromii


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: freshwater MAG --- YR_bin-2055

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Tolumonas sp.

ncbi_submitter: BILS


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Universite Laval


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Wuerzburg


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_country: Italy

ncbi_isolation_source: broncoalveolar lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_submitter: Guangxi University


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Rutgers University


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_assembly_level: Chromosome

ncbi_country: Hungary

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Regine Hakenbeck


ncbi_organism_name: Planktothrix agardhii NIVA-CYA 34

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA: Houston; TX

ncbi_isolation_source: vagina

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Seattle University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Lentihominibacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: University of Hawaii


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: LA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Malaysia

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: UNIVERSITY OF MALAYA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Streptomyces tanashiensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Paenibacillus sp. FSL L8-0493

ncbi_submitter: Penn State


ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Neisseria mucosa

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Brazil: Sao Paulo; Ribeirao Preto

ncbi_isolation_source: Catheter

ncbi_submitter: Ribeirao Preto Medical School - USP


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Michigan

ncbi_isolation_source: Insect

ncbi_organism_name: Rickettsia endosymbiont of Diachasma alloeum

ncbi_submitter: University of Liverpool


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Germany: Frankfurt

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Frankfurt


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: EMG


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: WA; Seattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: Lachnoclostridium sp. An169

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Fusobacterium varium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Greece: Lake pamvotis; Ioannina

ncbi_isolation_source: Lake Pamvotis surface sentiment

ncbi_organism_name: Aeromonas veronii

ncbi_strain_identifiers: pamvotica

ncbi_submitter: Agricultural University of Athens


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Tissierellaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: Fudan University


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: host s whole body

ncbi_organism_name: Candidatus Erwinia haradaeae

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_isolation_source: human gut

ncbi_organism_name: Dialister succinatiphilus


ncbi_country: Mexico: Nayarit; Tepic

ncbi_organism_name: Paraburkholderia atlantica

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium sp. NLR10a

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Aberdeen


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: IA

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Intraperitoneal

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Acetobacter sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CBG Instituto Politecnico Nacional


ncbi_organism_name: Melissococcus plutonius


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Marinovum sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Mexico: Morelos

ncbi_isolation_source: leaves of a female plant

ncbi_organism_name: Embleya scabrispora

ncbi_submitter: UNAM/ Institute of Investigations Biomedicas


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Polymorphobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Liaoning

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagaceae bacterium UBA4411

ncbi_submitter: University of Queensland


ncbi_country: Israel

ncbi_organism_name: Brucella abortus levi gila

ncbi_strain_identifiers: levi gila

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus levi gila


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: France: Tours

ncbi_isolation_source: bloodstream infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: Throat Culture

ncbi_submitter: Emory University


ncbi_country: USA

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Bradyrhizobium elkanii USDA 94

ncbi_strain_identifiers: USDA 94

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_submitter: European Institute of the Sea (IUEM) - France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: Sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: NASA Ames Research Center


ncbi_country: Viet Nam: Ho Chi Minh City

ncbi_isolation_source: Gastric antrum

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Science, VNU-HCM


ncbi_country: Germany: Mecklenburg-Vorpommern

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas rustica

ncbi_submitter: Max Rubner-Institut


ncbi_country: China:Guangdong; Shenzhen

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: uncultured Ureaplasma sp.


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: McGill University


ncbi_organism_name: Paraburkholderia phenoliruptrix

ncbi_submitter: College of Resources and Environmental science


ncbi_assembly_name: freshwater MAG --- Ki1-1-6m_bin-1343

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidade Federal do Para


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Qingdao Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Rhodobacter capsulatus

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Italy

ncbi_isolation_source: environmental swab sponge dairy facility blue cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: China: Hubei; Yichang; Yiling

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: Streptomyces sp. NPDC051322

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Agrobacterium rubi TR3 = NBRC 13261

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Agrobacterium;s__Agrobacterium rubi;x__Agrobacterium rubi TR3 = NBRC 13261


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: WA

ncbi_organism_name: Pantoea vagans

ncbi_submitter: University of Washington


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: US Food and Drug Administration


ncbi_country: Taiwan

ncbi_isolation_source: Chang-Gung Memorial Hospital; Linkou

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus 5S-0708

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes ihumii

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Yale University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Henan

ncbi_isolation_source: bark

ncbi_organism_name: Paenirhodobacter populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_country: USA: NC

ncbi_isolation_source: Yolk Sac

ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: AgResearch


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: University of Queensland


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsCore2_bin-1270

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_submitter: Agricultural Research Service


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_country: Portugal

ncbi_isolation_source: Homemade compost

ncbi_organism_name: Microbacterium invictum

ncbi_submitter: JIUJIANG UNIVERSITY


ncbi_country: China: Guizhou; Fuquan

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Rothia dentocariosa


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 103573

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: Massachusetts

ncbi_isolation_source: stem gall

ncbi_organism_name: Pseudomonas sp. MWU16-30322

ncbi_submitter: Midwestern University


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_assembly_name: E. coli O157

ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. F8092B

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. F8092B


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Northeastern University


ncbi_country: China: Hangzhou

ncbi_isolation_source: drainage fluid

ncbi_submitter: China Agriculture University


ncbi_submitter: Cepheid


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Santa Catarina; Ribanceira Beach

ncbi_isolation_source: prescapular lymph node

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Leyella stercorea

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus FVRH6118

ncbi_submitter: Broad Institute


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolate: SPRUCE 214

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: SPRUCE 214

ncbi_submitter: Georgia Institute of Technology


ncbi_isolate: Clostridium neonatale 62

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale 62

ncbi_submitter: universite paris cite


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Aalborg University


ncbi_country: Singapore

ncbi_isolation_source: sediments

ncbi_organism_name: Nitrospira sp. UBA5702

ncbi_submitter: University of Queensland


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: District of Columbia

ncbi_isolation_source: Surveillance

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: New York; NY

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis


ncbi_country: USA: Detroit

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Neoroseomonas alkaliterrae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Actinobaculum sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Yangzhou

ncbi_isolation_source: intestinal contents from a porcine slaughterhouse

ncbi_organism_name: Escherichia sp. NT45

ncbi_submitter: YangZhou university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_name: IMG-taxon 2698536703 annotated assembly

ncbi_organism_name: Thermocrinis minervae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Canada

ncbi_isolation_source: Cecal

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: New Zealand

ncbi_isolation_source: Human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: AUT University


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Michigan Extension site; Benton Harbor; Michigan

ncbi_organism_name: Pseudomonas congelans

ncbi_submitter: Max Planck Institute


ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: Nanjing University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Georgia Tech


ncbi_country: France: Aulnay-sous-bois

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Loyola University Chicago


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium 47-87


ncbi_country: Denmark: Kongens Lyngby

ncbi_isolation_source: soil

ncbi_organism_name: Variovorax sp. IB41

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Netherlands

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Undibacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mesorhizobium sp. M0146

ncbi_submitter: Washington State University


ncbi_country: China: Beijing

ncbi_isolation_source: gut

ncbi_organism_name: Weissella confusa

ncbi_submitter: INSTITUTE OF ZOOLOGY, CHINESE ACADEMY OF SCIENCES


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Neisseria sp. P0014.S008

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: uncultured Sangeribacter sp.


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Rhodomicrobiaceae bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_organism_name: Aggregatibacter segnis


ncbi_organism_name: Sulfitobacter sp. 1A13368

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Micronesia: Yap

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: Thiohalophilus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Alberta


ncbi_organism_name: Ponticoccus sp. SC6-56

ncbi_submitter: Shantou University


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_country: Taiwan

ncbi_isolation_source: Fu-Tsai (Fermented vegetable; food)

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: National Chung Hsing University


ncbi_organism_name: Collinsella aerofaciens ATCC 25986

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Switzerland

ncbi_isolation_source: plant tissue

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Sorbonne University


ncbi_country: China

ncbi_organism_name: Rothia sp. ZJ932

ncbi_submitter: Chinese Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. ZJ932


ncbi_isolation_source: Junction place located at Jeju Island of South Korea; where the North Pacific Ocean and a freshwater spring meet

ncbi_organism_name: Limimaricola soesokkakensis

ncbi_strain_identifiers: CECT 8367

ncbi_submitter: UVEG


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: University of Chicago


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Nostocoides sp.

ncbi_submitter: East China University of Science and Technology


ncbi_country: China: Hanshan county; Anhui province

ncbi_isolation_source: serum

ncbi_submitter: Anhui Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. heilongjiangensis


ncbi_organism_name: Campylobacter upsaliensis


ncbi_country: Spain: Leon

ncbi_isolation_source: food-contact surface

ncbi_submitter: Microbiome Applications for Sustainable food systems through Technologies and EnteRprise


ncbi_organism_name: Arcobacter cryaerophilus gv. pseudocryaerophilus

ncbi_strain_identifiers: LEO 74

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_country: China: Tianjing

ncbi_isolation_source: Haihe estuary

ncbi_organism_name: Sphingobium yanoikuyae

ncbi_strain_identifiers: TJ

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Methylomonas sp. MO1

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Qingdao

ncbi_isolation_source: plastics debris from sea coast

ncbi_organism_name: Brucella anthropi

ncbi_strain_identifiers: PBO

ncbi_submitter: The Institute of Oceanology, Chinese Academy of Sciences


ncbi_submitter: University of Oslo


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: United Kingdom: London

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_submitter: University of South Australia


ncbi_organism_name: Alteromonas sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Salmonella sp. K24256

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: Australia: Sydney; Botanical Gardens

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. MWH-Aus1W21

ncbi_submitter: University of Innsbruck


ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Denmark

ncbi_isolation_source: chicken

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Sagittula stellata E-37

ncbi_submitter: Gordon and Betty Moore Foundation Microbial Genome Sequencing Project


ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Canada: Quebec City

ncbi_isolation_source: sputum

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Thailand: Phitsanulok

ncbi_submitter: Cardiff University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Buchnera aphidicola (Sipha maydis)

ncbi_submitter: Centre for Microbiology and Environmental Systems Science


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_submitter: National Public Health Laboratory, NPHL, Khartoum, Sudan


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Health Research Institutes


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Colombia

ncbi_isolation_source: Excreted bodily substance

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Zurich


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Thalassovita sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: DOE JGI


ncbi_country: Pakistan

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: Capnocytophaga gingivalis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: China: Deep Bay

ncbi_isolation_source: surface sediment

ncbi_organism_name: Ruegeria pomeroyi

ncbi_submitter: Microbial Evolution and Ecology Laboratory,Shenzhen Research Institute


ncbi_country: Italy

ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China

ncbi_isolation_source: secretion

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Psychromonas sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Shigella flexneri


ncbi_isolate: AOP34_BR2_surf _bin _25

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP34_BR2_surf _bin _25

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Rhodoluna sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Rhodoluna;x__environmental samples;s__uncultured Rhodoluna sp.


ncbi_organism_name: Salmonella sp. SAL4443

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Sphaerochaeta sp.


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Rhodothermales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;c__Rhodothermia;o__Rhodothermales;x__environmental samples;s__uncultured Rhodothermales bacterium


ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Aeromonas sp. 602658

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: The University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Public Health Ontario


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Below Boulder

ncbi_organism_name: bacterium

ncbi_submitter: University of Duisburg-Essen


ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Alaska; Mendenhall Glacier

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. Mg1

ncbi_submitter: Texas A&M University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Washington


ncbi_organism_name: Enterococcus innesii

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Achromobacter sp. JD417

ncbi_submitter: Jinan University


ncbi_country: South Korea: Wando

ncbi_isolation_source: mytilus

ncbi_organism_name: Hasllibacter sp. MH4015

ncbi_submitter: Sungkyunkwan university


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Radboud University Nijmegen


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Colorado

ncbi_isolation_source: uterus

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: Australia: Roxby Downs

ncbi_isolation_source: Topsoil from arid and minimally vegetated gibber plain

ncbi_organism_name: Jiangellaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Massachusetts

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Portugal: National Park of Peneda-Geres; Ermida

ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Universidade do Minho


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter vonholyi

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Verrucomicrobia bacterium UBA6015

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA6015


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-WM

ncbi_organism_name: Methylobacter sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Erwinia amylovora CFBP 2585

ncbi_strain_identifiers: CFBP 2585

ncbi_submitter: CeBiTec


ncbi_assembly_name: freshwater MAG --- VK3_bin-1333

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Mucilaginibacter sp. UYP27

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: De novo assembly of KCRI isolate RDK06_423

ncbi_isolation_source: wound swab sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolate: metabat2_XCR1_HOM_7852_bwa.40 MAG

ncbi_organism_name: uncultured Clostridium sp.

ncbi_strain_identifiers: metabat2_XCR1_HOM_7852_bwa.40 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Italy: Lecco

ncbi_isolation_source: Urethral swab

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of Bern


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T77618

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Senegal: Dielmo; Senegal

ncbi_organism_name: Dielma fastidiosa


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus swezeyi

ncbi_strain_identifiers: ES 82

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Desulfatiglandaceae bacterium


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: University of Toronto


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 162

ncbi_submitter: Oregon State University


ncbi_organism_name: Luteibacter sp. RCC_6_2

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_submitter: Danone Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei;sb__Lacticaseibacillus paracasei subsp. paracasei;x__Lacticaseibacillus paracasei subsp. paracasei Lpp46


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Komeiliibacteriota;s__Candidatus Komeilibacteria bacterium RIFOXYC2_FULL_45_12


ncbi_country: Italy

ncbi_isolation_source: oropharyngeal swab

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aurantibacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Spain

ncbi_isolation_source: Hospital Universitario Gregorio Maranon (Madrid)

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CNAG-CRG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: addis ababa university


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0865

ncbi_submitter: Broad Institute


ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: Jinan University


ncbi_isolation_source: human gut

ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Tucson; AZ

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_country: Australia: Orpheus Island

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Propionivibrio sp.


ncbi_isolation_source: not available

ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: SC


ncbi_country: Mexico

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Nottingham Trent University, UK


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B363;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Alistipes dispar

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Moheibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Lane County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1C3

ncbi_submitter: Oregon State University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: isolated from sea urchin collected from Troitsa Bay in the Gulf of Peter the Great; East Sea

ncbi_organism_name: Tsuneonella troitsensis

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Wocania sp.


ncbi_country: Tanzania

ncbi_genome_representation: partial

ncbi_organism_name: Chryseobacterium cucumeris

ncbi_submitter: Sokoine University of Agriculture


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D5_bin-0140

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Finegoldia sp. BIOML-A2

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Hungary

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus group sp. N11

ncbi_submitter: Aarhus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. N11


ncbi_isolation_source: mozzerella cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Germany

ncbi_organism_name: Enterococcus faecium EnGen0019

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA:New York; EastHarlem

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_organism_name: Rhodococcus sp. 14-1411-2a

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 14-1411-2a


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: USA: Washington DC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: NATIONAL SCHOOL OF BIOLOGICAL SCIENCES


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R534;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_assembly_name: Rumen uncultured genome RUG13054

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: University of California, Berkeley


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 482


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Bacillus sp. FSL R5-0811

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R5-0811


ncbi_isolation_source: chlorinated drinking water; site 1

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Glasgow


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Brucella ceti B1/94

ncbi_submitter: Smi


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Qatar

ncbi_isolation_source: marine water from Arabian Gulf

ncbi_organism_name: Ningiella ruwaisensis

ncbi_submitter: University of Oklahoma


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Pseudomonas kurunegalensis

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_assembly_name: Rumen uncultured genome RUG14424

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: fermenting apple juice

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Secundilactobacillus;s__Secundilactobacillus collinoides;x__Secundilactobacillus collinoides DSM 20515 = JCM 1123


ncbi_assembly_name: freshwater MAG --- Day6-3_bin-113

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_country: Thailand

ncbi_isolation_source: Rice field soil sample in central Thailand

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Italy

ncbi_organism_name: Pantoea sp. AG1095

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Prescottella equi

ncbi_submitter: Peking University


ncbi_country: Russia: brackish canal between the Akhtarsky estuary and Azov sea; Krasnodar krai

ncbi_isolation_source: brackish water channel

ncbi_organism_name: Rhodomicrobium sp. Az07

ncbi_submitter: NRC "Kurchatov Institute"


ncbi_country: Peru: Tumbes

ncbi_isolation_source: soil

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Pseudoalteromonas fuliginea

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Japan

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Niigata University School of Medicine


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: South Africa: Ozwatini

ncbi_isolation_source: Rectum

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Garciella sp.


ncbi_submitter: FDA/CDC


ncbi_organism_name: Rubrobacter radiotolerans

ncbi_submitter: Cultivarium


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 2564

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC017615

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Lund University


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Syntrophomonas sp.

ncbi_submitter: University of Bremen


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:571

ncbi_submitter: DTU


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_country: USA: Unknown

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: JCVI


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces globisporus


ncbi_organism_name: Salmonella enterica


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Niveispirillum sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: Cupriavidus sp. H18C2

ncbi_submitter: University of Bath


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Cyanobacteria bacterium MAG COS1_bin_9

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium MAG COS1_bin_9


ncbi_country: Pakistan: Peshawar

ncbi_isolation_source: Nasobronchial lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umea University


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Viet Nam

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Victivallales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Candidatus Colimorpha enterica

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Colimorpha;s__Candidatus Colimorpha enterica


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea: Cheongju-si

ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Chungbuk National University


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pontibacterium sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_country: Thailand

ncbi_isolation_source: Carcass Rinse

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Mahidol University


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: Blood culture

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Proximal colon


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Northumbria University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus HI049B

ncbi_submitter: Broad Institute


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli O118:H16 str. 08-3651

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O118:H16;x__Escherichia coli O118:H16 str. 08-3651


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bredeney


ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_submitter: King Abdulaziz University


ncbi_country: Pakistan

ncbi_isolation_source: throat

ncbi_organism_name: Serratia rubidaea

ncbi_submitter: FDA


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Arthrobacter sp. MYb51

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Japan

ncbi_organism_name: Lacticigenium naphthae DSM 19658

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Ensifer sp. Root278

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: France: Marseille

ncbi_submitter: Institut hospitalo-universitaire en maladies infectieuses de Marseille


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG11524

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University College Cork


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolate: VTEC

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_organism_name: Streptomyces sp. SLBN-8D4


ncbi_country: USA: Boston

ncbi_submitter: Harvard Medical School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_isolation_source: Blood


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen University


ncbi_country: China: Hangzhou

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Yellow Sea Fisheries Research Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acidaminococcus sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG12469

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_submitter: The Italian National Institute of Health


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Bacteriology, Graduate School of Medicine, Gunma University


ncbi_country: India: Chora Island

ncbi_isolation_source: marine sediment

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: CSIR-National Chemical Laboratory


ncbi_country: Italy: Modena

ncbi_isolation_source: Respiratory Sample

ncbi_submitter: Pseudomonas Italian work group


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_assembly_name: Bacillus amyloliquefaciens_BR160_V1.0

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Hainan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: USA: Washington

ncbi_isolation_source: enrichment culture inoculated with soil

ncbi_organism_name: Pseudomonas sp. Sample_16

ncbi_submitter: Washington State University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: AAFC


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: University of Malaya


ncbi_organism_name: Atopobiaceae bacterium


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Otago


ncbi_organism_name: Klebsiella michiganensis


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Germany: Bavaria

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Streptomyces sp. TG1A-60

ncbi_submitter: Chungnam National University


ncbi_organism_name: Flavonifractor plautii


ncbi_organism_name: Ilumatobacter nonamiensis YM16-303

ncbi_submitter: Kitasato University


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: University of Queensland


ncbi_country: Australia: Orange

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_isolation_source: sea water

ncbi_organism_name: Pelagibacteraceae bacterium AG-422-B15

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon mucosa

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of New Hampshire


ncbi_country: USA: Florida

ncbi_isolation_source: sinkhole chemocline

ncbi_organism_name: Thiomicrorhabdus cannonii

ncbi_submitter: University of South Florida


ncbi_country: China: Guangzhou; Guangdong Province

ncbi_isolation_source: Paddy soil field

ncbi_organism_name: Rhodocyclaceae bacterium Paddy-1

ncbi_submitter: Guangdong Institute of Eco-Environmental and Soil Sciences


ncbi_organism_name: Streptococcus agalactiae GB00932

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Corynebacterium ureicelerivorans

ncbi_submitter: Aarhus University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Christian Medical College


ncbi_organism_name: Streptomyces sp. NPDC052071

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: MIT


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. SAL00666

ncbi_submitter: Zhejiang university


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus cereus group sp. MYBK217-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK217-2


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Solwaraspora sp. WMMB762

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Candidatus Liberibacter solanacearum

ncbi_submitter: ANSES


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_isolate: SPRUCE 280

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 280

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: King Abdulaziz University


ncbi_country: USA: TX

ncbi_isolation_source: swine

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: USA: Boston; MA

ncbi_isolation_source: burn

ncbi_organism_name: Staphylococcus aureus M0169

ncbi_submitter: Broad Institute


ncbi_country: South Africa: Pretoria

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium CG1_02_32_51


ncbi_country: Australia: Newcastle

ncbi_submitter: University of Queensland


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: water

ncbi_organism_name: Delftia lacustris

ncbi_submitter: Shandong First Medical University


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: China: Tailan River; Xinjiang

ncbi_isolation_source: riverside silt

ncbi_organism_name: Streptomyces tailanensis

ncbi_submitter: Tarim University


ncbi_organism_name: Providencia sp. PROV100

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Nanjing

ncbi_isolation_source: Laboratory-scale bioreactor

ncbi_organism_name: Elstera cyanobacteriorum

ncbi_submitter: NanJing University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Alabama at Birmingham


ncbi_assembly_name: Salmonella enterica CVM N51268 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sulfurospirillum multivorans DSM 12446

ncbi_submitter: Friedrich-Schiller-University of Jena


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter sp. WCHAc060006

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: University of Southern California


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: China: Jiangxi

ncbi_organism_name: Acinetobacter sp. YH12075

ncbi_submitter: South China Agricultural University


ncbi_country: Switzerland: Le Moleson region; Fribourg

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus sp. ESL0237

ncbi_submitter: University of Lausanne


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Methylobacterium sp.

ncbi_submitter: European Bioinformatics Institute