ncbi_organism_name: Mannheimia indoligenes

ncbi_submitter: University of Copenhagen


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_assembly_level: Contig

ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


gtdb_representative: f

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Santa Clara University


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Microbacterium sp. LMI1-1-1.1

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_country: Haiti

ncbi_isolation_source: Gray Water; External Clinic

ncbi_organism_name: Vibrio paracholerae HE-16

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Candidatus Alistipes stercoravium

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: California Department of Public Health


ncbi_country: China: Shaanxi

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_assembly_name: freshwater MAG --- Ki1-2-7m_bin-211

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Monash University


ncbi_assembly_name: freshwater MAG --- Loc081215-5m_bin-0025

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Belgium

ncbi_isolation_source: MinION assembly MagCore S15BD05371 (as-7)

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sciensano


ncbi_country: Russia: Vologda region

ncbi_isolation_source: Food products (beef)

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SRCAMB


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Conexibacter sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Desulfobacterales bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_organism_name: Erwinia amylovora

ncbi_strain_identifiers: Ol.kora 1

ncbi_submitter: Institute of plant biology and biotechnology


ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Shanghai Jiahui International Hospital


ncbi_organism_name: Jiangellales bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China

ncbi_isolation_source: thermophilic anaerobic digestion

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Streptomyces canus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: University of Waterloo


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA: IA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: INSTITUT PASTEUR DE PARIS


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Germany: Hesse

ncbi_isolation_source: cow udder

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Hessian State Laboratory


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Italy

ncbi_organism_name: Microbacterium sp. AG238

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Wuhan

ncbi_isolation_source: the aging flue-cured tobacco leaves

ncbi_organism_name: Bacillus subtilis


ncbi_organism_name: Bacillus sp. NEB1478

ncbi_submitter: NEB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. NEB1478


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thiotrichaceae bacterium


ncbi_organism_name: Gracilibacillus sp. D59

ncbi_submitter: Ondokuz Mayis University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Expressed milk fluid

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: Ausgem


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Agrobacterium sp. CR_3

ncbi_submitter: Banaras Hindu University


ncbi_assembly_name: freshwater MAG --- D14_bin-0251

ncbi_isolation_source: pond

ncbi_submitter: BILS


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_country: USA

ncbi_isolation_source: maybe soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Fermentibacterota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;x__unclassified Candidatus Fermentibacterota;s__Candidatus Fermentibacterota bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Lebanon: Makassed General Hospital

ncbi_isolation_source: deep tracheal aspirate (DTA)

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_submitter: East China Normal University


ncbi_isolate: Macrococcus caseoulyticus KaM20

ncbi_organism_name: Macrococcoides caseolyticum JCSC5402

ncbi_strain_identifiers: Macrococcus caseoulyticus KaM20

ncbi_submitter: Universita di Sassari


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_country: China: Dashan; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: South china normal university


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Prevotella denticola


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_submitter: University of Waterloo


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: IMG-taxon 2600255291 annotated assembly

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Australia: NSW

ncbi_isolation_source: feces

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: University of California, Davis


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: China: Yangzhou

ncbi_isolation_source: pork from retail market

ncbi_organism_name: Escherichia sp. M609

ncbi_submitter: YangZhou university


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_organism_name: Streptomyces sp. NPDC059698

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil:Santa Catarina; Florianopolis

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: ocean meets a freshwater spring in Soesokkak

ncbi_organism_name: Albidovulum aquaemixtae

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: CECT 8626

ncbi_submitter: UVEG

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: China

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: GensKey Gene Technology Co. Ltd.


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI


ncbi_organism_name: Microbacterium maritypicum

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_isolate: Clostridium neonatale E1

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale E1

ncbi_submitter: universite paris cite


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Salmonella sp. NW247

ncbi_submitter: Sichuan University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0185

ncbi_submitter: Broad Institute


ncbi_country: Australia: Ayr

ncbi_isolation_source: Agricultural soils with sugarcane crop

ncbi_organism_name: Rhizobium sp. YK2

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Texas

ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_country: China: Hangzhou

ncbi_isolation_source: throat swab of children with scarlet fever

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Hangzhou center for disease control and prevention


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: GA

ncbi_isolation_source: blood

ncbi_organism_name: Dolosigranulum pigrum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Nagoya University


ncbi_organism_name: Tahibacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: vagina

ncbi_organism_name: Hoylesella buccalis DNF00853

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospira sp.


ncbi_country: Germany

ncbi_isolation_source: barn boot swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Robert Koch Institute


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: burned soil

ncbi_organism_name: Tardiphaga sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Kordiimonadales bacterium JCM 17843

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Kordiimonadales;x__unclassified Kordiimonadales;s__Kordiimonadales bacterium JCM 17843


ncbi_organism_name: Halarcobacter mediterraneus

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: United Kingdom

ncbi_isolation_source: insect on Acer sp.

ncbi_organism_name: Buchnera aphidicola (Periphyllus lyropictus)

ncbi_submitter: Queen Mary University of London


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Coxiella burnetii

ncbi_submitter: ANIMAL HEALTH AND VETERINARY LABORATORIES AGENCY


ncbi_assembly_name: IMG-taxon 2651870176 annotated assembly

ncbi_organism_name: Alteribacillus iranensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01447

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01447


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: Salmonella sp. NW480

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudomonas sp. LjRoot263

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Aeromicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_level: Chromosome

ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Purdue University


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Serratia sp. CY51249

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY51249


ncbi_organism_name: Streptomyces sp. NBC_01384

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Thiohalomonadaceae bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Flagellimonas marina

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: University of East Anglia


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Saudi Arabia: Thuwal; RO plant located on Red Sea

ncbi_isolation_source: biofilm from MA_RO membrane2

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coriobacteriaceae bacterium AF31-11AC

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Italy: Palermo

ncbi_isolation_source: urine culture

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Istituto Superiore di Sanita

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_country: Czech Republic: Praha

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii NIPH 601

ncbi_strain_identifiers: NIPH 601

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii NIPH 601


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SRCAMB


ncbi_organism_name: Enterocloster bolteae

ncbi_strain_identifiers: ATCC BAA-613

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Rhizobiales bacterium UBA3990

ncbi_submitter: University of Queensland


ncbi_country: USA: NE

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Citrobacter braakii


ncbi_country: Belgium: Antwerp

ncbi_isolation_source: Oropharinx

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aarhus University


gtdb_type_species_of_genus: t

ncbi_organism_name: Splendidivirga corallicola

ncbi_submitter: Guangxi University


ncbi_country: Bangladesh: Nandipara

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oxford University Clinical Research Unit


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada

ncbi_organism_name: Mycoplasmopsis gallopavonis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: China: Shaanxi

ncbi_isolation_source: pig fecal swab

ncbi_submitter: China Agricultural University


ncbi_organism_name: Vibrio sp. V07_P2A8T137

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: Oman

ncbi_submitter: Sultan Qaboos University


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_country: USA

ncbi_isolation_source: Uterus

ncbi_submitter: University of Florida


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Ithaca

ncbi_isolation_source: cows with mastitis at dairy farm

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: UNICAMP


ncbi_organism_name: Chitinophagaceae bacterium MMS25-I14

ncbi_submitter: Chungnam national university


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: China

ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HANYANG UNIVERSITY


ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Hospital Muenster


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer N sample 29 PSU in greater than .8 micron size fraction

ncbi_organism_name: Vulcanococcus sp. DEBay_Sum29NG08_81

ncbi_submitter: Clemson University


ncbi_country: Australia

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_submitter: Central Queensland University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_country: Russia: Samara

ncbi_isolation_source: soil contaminated with crude oil

ncbi_organism_name: Gordonia polyisoprenivorans

ncbi_submitter: IBPM RAS


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Salinicoccus roseus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Ornithinibacillus californiensis

ncbi_submitter: Zhejiang University


ncbi_country: Japan

ncbi_isolation_source: Bos taurus

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Polyangiaceae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: food

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Urine

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_country: USA: DC

ncbi_isolation_source: Abscess

ncbi_organism_name: Aggregatibacter aphrophilus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: agricultural settling lagoon at Oklahoma State University

ncbi_organism_name: Clostridium carboxidivorans P7

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China agricultural university


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 241

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Corynebacterium durum

ncbi_submitter: Center for Bioinformatics


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFOXYD1_FULL_36_19


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: Milk product

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Agroscope


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University


ncbi_country: South Korea: River mouth of Nakdong River

ncbi_isolation_source: Industrial wastewater treatment plant

ncbi_organism_name: Thermomonas aquatica

ncbi_submitter: Korean Research Institute of Bioscience and Biotechnology


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Australia: Darwin; Northern Territory

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Menzies School of Health Research


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_organism_name: Propionimicrobium lymphophilum DSM 4903

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: cattle

ncbi_submitter: United State Department of Agriculture


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Stanford University


ncbi_country: China: Hongkong

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. BcHK10

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BcHK10


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Church and Dwight


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_submitter: Drexel


ncbi_organism_name: uncultured Fretibacterium sp.

ncbi_submitter: EMG


ncbi_country: Azerbaijan

ncbi_isolation_source: Corpse

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: Russia: Moscow

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences


ncbi_country: Netherlands: Groningen

ncbi_submitter: unverisity medical center groningen


ncbi_country: USA: Lincoln; Arkansas

ncbi_isolation_source: proximal right femur

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_country: Malaysia: Universiti Teknologi Malaysia; Greenhouse

ncbi_isolation_source: soil cooling of temperate crop in the tropical climate

ncbi_organism_name: Bacillus sp. C21

ncbi_submitter: Fundamental Research Grant Scheme (FRGS)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. C21


ncbi_country: France: Limoges

ncbi_submitter: Universite Paris Sud


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_country: USA

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_country: Poland: Poznan

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-460-02_S4_C1

ncbi_submitter: IGS


ncbi_isolate: CTENA6 L123

ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_strain_identifiers: CTENA6 L123

ncbi_submitter: University of Vienna


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: bacterium

ncbi_submitter: Kansas State University


ncbi_submitter: Finnish Food Authority


ncbi_organism_name: Malaciobacter marinus

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: China: Yunnan

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Leptolyngbya boryana IAM M-101

ncbi_strain_identifiers: IAM M-101

ncbi_submitter: Graduate School of Bioagricultural Sciences, Nagoya University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Leptolyngbyales;f__Leptolyngbyaceae;x__Leptolyngbya group;g__Leptolyngbya;s__Leptolyngbya boryana;x__Leptolyngbya boryana IAM M-101


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Tang lab


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Denmark

ncbi_organism_name: Lactobacillus pasteurii

ncbi_submitter: Carlsberg Research Laboratory


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolate: FDA_2010_148_Black Pepper-4

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2


ncbi_organism_name: Selenomonas noxia

ncbi_submitter: EMG


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFOXYB12_FULL_58_9


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Ghana: Asante Akyem District

ncbi_isolation_source: Chronic wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Goettingen (UMG)


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Olsenella uli

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: freshwater MAG --- Loc081215-6m_bin-2245

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Cyanobacteria bacterium J003

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J003


ncbi_country: USA: PA

ncbi_isolation_source: stool

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: UNIVERSITY OF PENNSYLVANIA


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lactobacillus iners DSM 13335

ncbi_submitter: BCM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus iners;x__Lactobacillus iners DSM 13335


ncbi_country: Norway: Rogaland County

ncbi_organism_name: Francisella noatunensis

ncbi_submitter: Northern Arizona University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 8516B

ncbi_submitter: University of Exeter


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Iran

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Staphylococcus aureus Lyso 2 2010

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus Lyso 2 2010


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Ireland

ncbi_isolation_source: Box

ncbi_submitter: Teagasc Food Research Centre


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Instituto de Quimica


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Thiohalomonadales bacterium

ncbi_submitter: Chinese Academy of Sciences, Institute of Microbiology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridia bacterium


ncbi_country: China: Tibetan lake

ncbi_isolation_source: water

ncbi_organism_name: Nesterenkonia sp. LB17

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_submitter: SC


ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: Sweden: Gothenburg

ncbi_submitter: Chalmers University of Technology


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Sweden

ncbi_isolation_source: Turdus philomelos

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Bath


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: India: Vellore

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: France

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_country: USA: PA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Maize ensilage

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: LTC 224

ncbi_submitter: ATA BIO TEKNOLOJI ILAC SANAYI VE TICARET LTD. STI


ncbi_country: United Kingdom:Sheffield

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_submitter: Jan Kochanowski University


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Rochester; Minnesota

ncbi_isolation_source: Associated Infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Mayo Clinic


ncbi_country: Brazil: Roraima

ncbi_submitter: Oswaldo Cruz Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_submitter: University of Toronto


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ANLIS "Dr. Carlos G. Malbran"


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV041


ncbi_organism_name: Hydrogenobacter thermophilus

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Chile: Santiago

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Japan

ncbi_organism_name: Bradyrhizobium sp. Ce-3

ncbi_submitter: Faculty of Applied Biological Sciences, Gifu University


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Kitasatospora sp. NPDC057965

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC090306


ncbi_organism_name: Sphingobium fuliginis

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Enorma massiliensis


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: [Kitasatospora] papulosa


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Acinetobacter stercoris

ncbi_submitter: JLU


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: Colon

ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Calditerrivibrio sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_assembly_name: IMG-taxon 2582580730 annotated assembly

ncbi_organism_name: Desulfovibrio litoralis DSM 11393

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: USA: Kansas

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Porticoccus sp.

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Brazil

ncbi_isolation_source: water

ncbi_organism_name: Yersinia frederiksenii

ncbi_submitter: SC


ncbi_country: China: Nanchang

ncbi_isolation_source: bile

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University Health Science Center


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Kidney

ncbi_organism_name: Leptospira borgpetersenii serovar Hardjo

ncbi_submitter: INDICASAT-AIP


ncbi_organism_name: Bacillus cereus

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Oenococcus oeni DSM 20252 = AWRIB129

ncbi_submitter: The Australian Wine Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Oenococcus;s__Oenococcus oeni;x__Oenococcus oeni DSM 20252 = AWRIB129


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA: CA

ncbi_isolation_source: Raw Goat Milk

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Mesorhizobium sp. M0907

ncbi_submitter: Washington State University


ncbi_country: Portugal: Lisbon area

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_isolation_source: pig gut metagenome


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Greece

ncbi_organism_name: Pseudomonas amygdali

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Flavonifractor sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Thermoflexaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: France

ncbi_isolation_source: Minced meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: Mesorhizobium vachelliae

ncbi_submitter: University of Pretoria


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: Moorella naiadis (nom. illeg.)

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Vibrio caribbeanicus ATCC BAA-2122

ncbi_strain_identifiers: ATCC BAA-2122

ncbi_submitter: FDA


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA:New York; CentralBronx

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium GW2011_GWA2_38_36


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: Morocco: Rabat-Sale-Zemmour-Zaer; Khemisset Province

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: University of Florida


ncbi_isolation_source: feces

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Canada: Ottawa

ncbi_isolation_source: surface water of an agricultural watershed

ncbi_organism_name: Campylobacter molothri

ncbi_submitter: Texas Tech University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: KEMRI


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Borreliella garinii PBr

ncbi_strain_identifiers: PBr

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: North Sea: coast

ncbi_isolation_source: sediment

ncbi_organism_name: Tateyamaria pelophila

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: Korea

ncbi_isolation_source: coastal seawater in the East Sea of Korea; at a depth of 100 m

ncbi_organism_name: Galbibacter orientalis DSM 19592

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Galbibacter;s__Galbibacter orientalis;x__Galbibacter orientalis DSM 19592


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Peribacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;x__unclassified Candidatus Peribacteraceae;s__Candidatus Peribacteraceae bacterium


ncbi_submitter: Chongqing Medical University


ncbi_country: Germany

ncbi_isolation_source: Hospital environment

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Belgium

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Aarhus University


ncbi_country: USA: Ohio

ncbi_isolation_source: intra-abdominal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: USA: Virginia

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. 6D_7.1_Bac1

ncbi_submitter: Washington University in St. Louis


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Canada: Nova Scotia;Halifax

ncbi_isolation_source: stool

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Portugal

ncbi_isolation_source: Feces

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Universidade do Algarve


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Kumtag Desert; Xinjiang

ncbi_organism_name: Phytohalomonas tamaricis

ncbi_submitter: Chinese Academy of Forestry


ncbi_isolation_source: metagenome

ncbi_organism_name: Salmonella bongori

ncbi_submitter: University of Queensland


ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Candidatus Anaerobutyricum stercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_isolate: AOP35_05H_surf _bin _20

ncbi_organism_name: Sphingobacterium sp.

ncbi_strain_identifiers: AOP35_05H_surf _bin _20

ncbi_submitter: Genoscope


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of Florida


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Salmonella sp. SAL04209

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Pseudothermotoga sp.


ncbi_organism_name: Desulfovibrio fairfieldensis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Clostridium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: New Mexico

ncbi_isolation_source: Fecal Material

ncbi_organism_name: Streptomyces sp. A1277

ncbi_submitter: Hubbard Center for Genome Studies


ncbi_country: France: Auxerre

ncbi_isolation_source: Skin biopsy

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CHRU Besancon


ncbi_organism_name: Streptomyces sp. NPDC049602

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lewinellaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11974

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Svalbard: Midtre Lovenbreen glacier

ncbi_isolation_source: Glacial forefield (soil)

ncbi_organism_name: Pseudomonas sp. N40(2020)

ncbi_submitter: MicroArctic


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Monash University


ncbi_country: China

ncbi_isolation_source: hospital sewage

ncbi_submitter: Southwest Medical University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_country: Poland: Warsaw

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_country: Germany: Eilenburg

ncbi_isolation_source: active sludge of wastewater treatment plant

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Helmholtz Center for Environmental Research -UFZ


ncbi_organism_name: Aeromonas sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Fujita Health University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: The University of Queensland


ncbi_country: India:Tamil Nadu; Pichavaram

ncbi_isolation_source: wild rice

ncbi_organism_name: Swaminathania salitolerans

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: France

ncbi_isolation_source: Minced meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Sydney

ncbi_submitter: The University of Sydney


ncbi_organism_name: Promineifilum sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Promineifilum;x__unclassified Candidatus Promineifilum;s__Promineifilum sp.


ncbi_assembly_name: Hheil

ncbi_organism_name: Helicobacter heilmannii

ncbi_submitter: UGENT


ncbi_country: South Korea: East Sea

ncbi_organism_name: Flavobacteriaceae bacterium UJ101

ncbi_submitter: Pukyong National University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_assembly_name: Rumen uncultured genome RUG330

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Eritrea

ncbi_isolation_source: lung of caprine with contagious caprine pleuropneumonia

ncbi_submitter: EVOLMYCO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capripneumoniae;x__Mycoplasma capricolum subsp. capripneumoniae 99108


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: rhizosphere soil culture M44

ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: Muribaculum gordoncarteri

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: India

ncbi_organism_name: Microbacterium testaceum

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-25

ncbi_submitter: Arkin Lab


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Czech Republic

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_organism_name: Streptomyces omiyaensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Sichuan

ncbi_isolation_source: goat

ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Southwest University for Nationalities


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_isolation_source: human feces metagenome


ncbi_country: Myanmar:Bago; Leikpaya Reservoir

ncbi_isolation_source: Eutrophic water

ncbi_organism_name: Candidatus Phycosocius bacilliformis

ncbi_submitter: University of Tsukuba

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;x__Caulobacterales incertae sedis;g__Candidatus Phycosocius;s__Candidatus Phycosocius bacilliformis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Heteroscillospira lomanii

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Heteroscillospira;s__Candidatus Heteroscillospira lomanii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Heteroscillospira;s__Candidatus Heteroscillospira lomanii


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: India: Vellore

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Cow

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: raw milk for cow(Bos taurus)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Meiji Co., Ltd


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Tel Aviv University


ncbi_assembly_name: IMG-taxon 2724679821 annotated assembly

ncbi_organism_name: Dokdonia pacifica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Yellowstone National Park

ncbi_isolation_source: water

ncbi_organism_name: Parathermosynechococcus lividus PCC 6715

ncbi_submitter: Peking University Shenzhen Graduate School


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_country: China: Tibet

ncbi_isolation_source: hot spring microbial mat

ncbi_organism_name: Thermoleptolyngbya sichuanensis XZ-Cy5

ncbi_submitter: China university of geosciences


ncbi_organism_name: Mesocricetibacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA

ncbi_organism_name: Bacteroides caccae


ncbi_country: China: Fuzhou

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: fermented food

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Science, Prince of Songkla University


ncbi_organism_name: Neobacillus drentensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Brucella anthropi


ncbi_assembly_name: SOAPdenovo v1.05

ncbi_isolation_source: surface seawater from the Bering Sea

ncbi_organism_name: Hyphomonas beringensis

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_organism_name: Filifactoraceae bacterium


ncbi_country: Australia: Western Australia

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: Oregon State University


ncbi_isolation_source: maxillary sinus

ncbi_organism_name: Mycolicibacterium setense

ncbi_submitter: URMITE


ncbi_organism_name: Promicromonospora sp. NPDC050262

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Freiburg/Breisgau

ncbi_isolation_source: human wound obtained from dog bite

ncbi_organism_name: Corynebacterium freiburgense

ncbi_submitter: Bielefeld University


ncbi_country: USA: Arizona

ncbi_isolation_source: trach asp

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Pantoea sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori HP250BSi

ncbi_submitter: Washington University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GenomeTrakr Project: Ohio Department of Agriculture | Animal Disease Diagnostic Laboratory


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolate: SPRUCE 299

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_strain_identifiers: SPRUCE 299

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Rhodocyclaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: mouse gut metagenome


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: California Institute of Technology


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: USA:New York; CentralBronx

ncbi_isolation_source: nasal

ncbi_submitter: SC


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Aneurinibacillus aneurinilyticus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Sutterella wadsworthensis


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-02240

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: AIMST University


ncbi_country: Netherlands

ncbi_isolation_source: Wall biofilm

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Vibrio sp. B1FLJ16

ncbi_submitter: UMR 1253, INRA/Agrocampus


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Oceanisphaera arctica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Taiwan: Pingtung; Sih-Chong-Si hot spring

ncbi_isolation_source: spring water

ncbi_organism_name: Tepidimonas taiwanensis

ncbi_submitter: Biocant


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillota bacterium Meth-B3

ncbi_submitter: Bangor University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Bacillota bacterium Meth-B3


ncbi_organism_name: Vibrio cholerae CP1110

ncbi_submitter: CosmosID


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Spain

ncbi_isolation_source: soil

ncbi_organism_name: Neorhizobium sp. T7_12

ncbi_submitter: Centre for Plant Biotechnology and Genomics UPM-INIA


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_organism_name: Turicimonas muris


ncbi_country: France

ncbi_isolation_source: flower

ncbi_organism_name: Erwinia persicina

ncbi_submitter: INRAE


ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Iowa


ncbi_assembly_name: Salmonella enterica CVM N44694 v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Chicken Wings

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: China: Beijing

ncbi_isolation_source: gut

ncbi_organism_name: Copranaerobaculum intestinale

ncbi_submitter: Beijing institute of microbiology and epidemiology


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_country: USA

ncbi_isolation_source: blood sample from patient with bacteremia

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CIG1176


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: Arkansas; Bismarck

ncbi_isolation_source: family farm small pasture with chickens and goats

ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: Ouachita Baptist University


ncbi_organism_name: bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: oral mucosa wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Acinetobacter higginsii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Bacteroides fluxus

ncbi_submitter: EMG


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Ireland

ncbi_submitter: University of Galway


ncbi_country: Peru: Lima

ncbi_isolation_source: wildlife


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Bacteroides caecimuris


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0213R

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptococcus pyogenes ABC020005716


ncbi_assembly_name: work bench 6.5 assembly of Candidatus Thioalkalivibrio spongium HK1

ncbi_country: Hong Kong: Clear Water Bay

ncbi_isolation_source: Sponge symbiont

ncbi_organism_name: Thioalkalivibrio sp. HK1

ncbi_submitter: Hong Kong University of Science and Technology


ncbi_organism_name: Streptomyces sp. NPDC017413

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India: Madurai

ncbi_isolation_source: cornea from keratitis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aravind Medical Research Foundation


ncbi_organism_name: Klebsiella sp. EMBS2024

ncbi_submitter: Eminent Biosciences, Mahalakshmi Nagar, Indore, India.


ncbi_isolation_source: oral cavities

ncbi_organism_name: Simonsiella muelleri ATCC 29453

ncbi_submitter: INRS-Institut Armand Frappier


ncbi_organism_name: Streptomyces sp. AHU1

ncbi_submitter: Anhui University


ncbi_strain_identifiers: Kantorowic

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Icterohaemorrhagiae;x__Leptospira interrogans serovar Icterohaemorrhagiae str. Kantorowic


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Legionellales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Leuconostoc citreum

ncbi_strain_identifiers: NRIC 1776

ncbi_submitter: Laboratory of Food Chemistry, Department of Food, aroma and Cosmetic Chemistry, Faculty of Bioindustry, Tokyo University of Agriculture


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Bacteriology, Basic Medicine, Kyushu University Faculty of Medical Sciences


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Prevotella sp. CAG:255

ncbi_submitter: DTU


ncbi_organism_name: Phytobacter diazotrophicus

ncbi_submitter: Unidad de Genomica y Bioinformatica


ncbi_country: China: Shanghai

ncbi_isolation_source: Gut

ncbi_organism_name: Fusobacterium vincentii

ncbi_submitter: Shanghai Tenth People's Hospital, Tongji University School of Medicine


ncbi_country: USA: Boston

ncbi_isolation_source: ear

ncbi_submitter: Wyss Institute at Harvard University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Stool

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: IP


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Chicago


ncbi_country: USA: Cincinatti

ncbi_isolation_source: abscess

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Hylemonella sp.

ncbi_submitter: Tang lab


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_country: USA: MO

ncbi_isolation_source: lung

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Italy

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Campylobacter geochelonis

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Korea: Seoul

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Kyung Hee University


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Thermotogota bacterium


ncbi_organism_name: Bordetella pseudohinzii

ncbi_submitter: Guizhou Medical University


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Limnohabitans sp. Rim8

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus cereus group sp. MYBK106-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK106-1


ncbi_organism_name: uncultured Christensenella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_country: New Zealand: Auckland

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces vinaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces virginiae


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Planctomycetaceae bacterium UBA7805

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Universita' degli Studi di Milano


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Sulfurovum sp. UBA6199


ncbi_assembly_name: Raoultella ornithinolytica

ncbi_organism_name: Raoultella planticola

ncbi_submitter: URMITE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Candidatus Peribacteraceae bacterium

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;x__unclassified Candidatus Peribacteraceae;s__Candidatus Peribacteraceae bacterium


ncbi_country: USA: South Dakota

ncbi_isolation_source: Intestinal content

ncbi_organism_name: Enterococcus durans

ncbi_submitter: South Dakota State University


ncbi_country: Spain: Madrid

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: EvoTAR


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Deferribacterales bacterium UBA2228


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Distal colon


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Aalborg University