ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Embrapa Maize and Sorghum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: Mediterranean Sea

ncbi_genome_representation: full

ncbi_isolation_source: marine environment

ncbi_organism_name: Synechococcus sp. PROS-7-1

ncbi_submitter: Station Biologique de Roscoff (CNRS - Sorbonne University)


gtdb_representative: f

ncbi_assembly_level: Contig

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Argentina: Cordoba; Marcos Juarez

ncbi_isolation_source: wheat stem and spike

ncbi_organism_name: Xanthomonas prunicola

ncbi_submitter: Instituto de Patologia Vegetal CIAP-INTA


ncbi_country: USA: Amherst; MA

ncbi_organism_name: Bifidobacterium callitrichos

ncbi_submitter: University of Massachusetts


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-1192

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Konkuk university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


gtdb_type_species_of_genus: t

ncbi_country: Russia

ncbi_organism_name: Echinicola pacifica DSM 19836

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Cyclobacteriaceae;g__Echinicola;s__Echinicola pacifica;x__Echinicola pacifica DSM 19836

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Deinococcus aquaticus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium GW2011_GWA1_33_33


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: Federation unviersity


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Imperial College London


ncbi_organism_name: Neisseria sp. P0020.S003

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_organism_name: Nonomuraea sp. 3N208

ncbi_submitter: Ondokuz Mayis University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Synbiotic Health


ncbi_country: China: Tianjin

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: freshwater MAG --- LJ_bin-0959

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Dehalococcoidia bacterium UBA6808

ncbi_submitter: University of Queensland


ncbi_country: Spain: Madrid

ncbi_isolation_source: Rectal; surveillance program

ncbi_submitter: Hospital Universitario Virgen Macarena


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_assembly_name: IMG-taxon 2609459711 annotated assembly

ncbi_organism_name: Ensifer sp. OV372

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Italy

ncbi_isolation_source: Infant Stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Parma


ncbi_isolation_source: chicken caecal content

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Virginia

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_country: South Korea: Gimje

ncbi_isolation_source: Melon

ncbi_organism_name: Paracidovorax citrulli

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Yakult Central Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Tasmania

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_country: USA: Kansas

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: University of Exeter


ncbi_country: Russia: Irkutsk Region

ncbi_isolation_source: fetus

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Research Anti-Plague Institute


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Helicobacter typhlonius


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Purity-IQ Inc.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: Soybean paste (Chonggugjang)

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter caecicola

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Qionghai County; Hainan Province

ncbi_isolation_source: soil

ncbi_organism_name: Lysinibacillus boronitolerans

ncbi_submitter: Hainan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Canada: Burnt Point; Prince Edward Island

ncbi_isolation_source: marine sediments

ncbi_organism_name: Streptomyces sp. RKND-216

ncbi_submitter: University of Prince Edward Island


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Mycoplasmoides gallisepticum

ncbi_strain_identifiers: LC

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Upshore

ncbi_submitter: University of Basel


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus hirae


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lachnospira eligens


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Larissa


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Streptococcus suis YS4

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Caldilineaceae bacterium


ncbi_organism_name: Fibrobacteria bacterium

ncbi_submitter: East China Normal University


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_organism_name: Sulfurovaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Borreliella burgdorferi 64b

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Helicobacter acinonychis


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Veillonella sp. 20925_1_51

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Japan

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Niigata University School of Medicine


ncbi_country: Italy: Perugia

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Camerino


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UIUC


ncbi_isolation_source: Industrial ABE fermentation

ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: LanzaTech Inc


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Guangzhou

ncbi_isolation_source: Miniatus Grouper

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jinan university


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Novosphingobium sp.


ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Borreliella afzelii

ncbi_strain_identifiers: PSto

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Calgary


ncbi_organism_name: Limnothrix redekei LRLZ20PSL1

ncbi_refseq_category: reference genome

ncbi_submitter: University of Bologna


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolate: clinical

ncbi_isolation_source: clinical

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: clinical

ncbi_submitter: Faculty of Health Sciences


ncbi_country: USA: OR

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Yeongju

ncbi_isolation_source: ginseng field soil

ncbi_organism_name: Siccirubricoccus sp. G192

ncbi_submitter: Hankyong National University


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Gracilimonas sp.


ncbi_country: South Africa: Cape Town

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Kocuria palustris

ncbi_submitter: marine college, shandong university


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_assembly_level: Chromosome

ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: Water column of Rimov Reservoir; Czechia

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: Biology Centre CAS, Institute of Hydrobiology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Instituto Mexicano del Seguro Social CMN SigloXXI


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFOXYC2_FULL_41_10


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Waterline

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: University of Basel


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: MASSEY UNIVERSITY


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas denitrificans (nom. rej.)

ncbi_submitter: University of Washington


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_submitter: University of Galway


ncbi_country: Japan: Kusatsu

ncbi_organism_name: Serratia fonticola

ncbi_submitter: Osaka Ohtani University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Pearl River Estuary; Guangdong

ncbi_isolation_source: sediment

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Roseburia sp. AF12-17LB

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-198

ncbi_submitter: Broad Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Candidatus Scatomorpha stercoravium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha stercoravium


ncbi_organism_name: Streptomyces parvulus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Italian National Institute of Health


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Pseudarthrobacter sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Aalborg University


ncbi_country: Australia

ncbi_organism_name: Streptomyces sp. MH60

ncbi_submitter: CSIRO


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin1

ncbi_isolation_source: soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_strain_identifiers: MSU bin1

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Vibrio cholerae E306

ncbi_submitter: Institute of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Menzies School of Health Research


ncbi_country: France

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Sichuan

ncbi_organism_name: Bacillus sp. FJAT-25509

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-25509


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Propionibacterium sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: Brazil: Rio de Janeiro; Parnaso

ncbi_organism_name: Mycolicibacterium sp. CBMA 293

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Neisseria cinerea

ncbi_submitter: EMG


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Acholeplasmatales bacterium DTU056


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV230

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Argentina

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_organism_name: Acidisoma sp.


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: China: Jiaxing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Second Affiliated Hospital of Jiaxing University


ncbi_country: USA: WI

ncbi_isolation_source: Milk filter (dairy cow farm)

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Peritoneal Fluid

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Korea: Gunsan

ncbi_isolation_source: interior of root

ncbi_organism_name: Chryseobacterium cucumeris

ncbi_submitter: Korea University


ncbi_country: Germany: Berlin

ncbi_isolation_source: beetle abdomen

ncbi_submitter: Johannes Gutenberg University Mainz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Shikimatogenerans;s__Candidatus Shikimatogenerans silvanidophilus


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Lentisphaerales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Quadram Institute Bioscience


ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Pseudomonas sp. PR5

ncbi_submitter: MJP Rohilkhand University, Bareilly


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Albibacterium profundi

ncbi_submitter: Ocean University of China


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Apilactobacillus kunkeei

ncbi_submitter: xiamen university


ncbi_organism_name: Lachnospira eligens


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Streptomyces antimycoticus

ncbi_submitter: University of Melbourne


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG366

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Italy: Piacenza

ncbi_isolation_source: sourdough

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA: Baltimore

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Maryland


ncbi_country: Spain: Mar Menor (Region de Murcia)

ncbi_isolation_source: marine sediment

ncbi_submitter: Universidad de Alicante

ncbi_taxonomy: d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Carthagonibacter;s__Candidatus Carthagonibacter metallireducens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Carthagonibacter;s__Candidatus Carthagonibacter metallireducens


ncbi_isolate: STB-H

ncbi_organism_name: Mycobacterium canettii CIPT 140070013

ncbi_submitter: Genopole Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium canetti;x__Mycobacterium canettii CIPT 140070013


ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Fudan University


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: not provided

ncbi_organism_name: Fusobacterium nucleatum


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Enterobacteriaceae bacterium ENNIH3

ncbi_submitter: NIH


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: LBMM 6386

ncbi_submitter: University of the Basque Country


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: EMG


ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Germany: Erlangen

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: drinking water

ncbi_organism_name: Methylocystaceae bacterium UBA5192

ncbi_submitter: University of Queensland


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United Kingdom Health Security Agency


ncbi_organism_name: Parvularculaceae bacterium


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Thailand: Sing Buri Province

ncbi_isolation_source: gills of Trichogaster trichopterus

ncbi_organism_name: Neochlamydia sp. AcF95

ncbi_submitter: University of Vienna


ncbi_organism_name: Streptococcus australis


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: swab

ncbi_organism_name: Morganella morganii

ncbi_submitter: University of Sao Paulo


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: China: Shuangliu

ncbi_organism_name: Ochrobactrum teleogrylli

ncbi_submitter: Sichuan University


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Curtissbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;x__unclassified Candidatus Curtissbacteria;s__Candidatus Curtissbacteria bacterium


ncbi_isolation_source: marine

ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: St. Paul; Minnesota

ncbi_isolation_source: Plastic debris in land/lake environment

ncbi_organism_name: Bacillus sp. PDNC022

ncbi_submitter: University of Minnesota

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. PDNC022


ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_country: USA: Lake Washington

ncbi_organism_name: Acidovorax sp. 107

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Soonwooa sp.


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_submitter: Massey University


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Caldisericales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: Lake sediment

ncbi_organism_name: Methylocystis rosea

ncbi_submitter: SBRC Nottingham


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Buchnera aphidicola (Shivaphis celti)

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: USA: California; Middletown

ncbi_organism_name: Nitrospirota bacterium


ncbi_country: Japan: Otshuchi Bay

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Canada: Rivire St-Jean; Gasp; Quebec

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: uncultured Idiomarina sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jeonbuk National University


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Shenzhen

ncbi_isolation_source: Throat swab 30

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_organism_name: Alcaligenaceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: South China Agricultural University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: Pandoraea apista

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Succinivibrio sp.


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Methylomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Jongsikchunia kroppenstedtii

ncbi_submitter: The third institute of Oceanography


ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: National Research and Innovation Agency


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ferrovibrio sp.

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Prevotella sp.


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Escherichia coli 908573

ncbi_submitter: Washington University


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Bacillus safensis

ncbi_submitter: University of Malaya


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Clostridium perfringens D

ncbi_submitter: University of Glasgow


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Limnospira sp. PMC 1261.20

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_country: Russia

ncbi_isolation_source: probiotic preparation  Lactobacterinum

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: FSBSI Institute of Experimental Medicine


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 206

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: SNUC 3795

ncbi_submitter: University of Calgary


ncbi_country: USA: Gulf of Mexico

ncbi_isolate: Canyon 246

ncbi_isolation_source: segment 1 of single filament from GC246 mud volcano site

ncbi_organism_name: Candidatus Marithrix sp. Canyon 246

ncbi_strain_identifiers: Canyon 246

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Candidatus Marithrix;x__unclassified Candidatus Marithrix;s__Candidatus Marithrix sp. Canyon 246


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: 1-5 micron

ncbi_organism_name: Vibrio sp. F13

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Usitatibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: South Korea: Suwon

ncbi_isolation_source: soil

ncbi_organism_name: Cellulomonas fulva

ncbi_submitter: Kyungpook National University


ncbi_country: Russia: Perm region

ncbi_isolation_source: snow; oilfield

ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_strain_identifiers: IEGM 639

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Enterorhabdus sp.

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lejia lagoon

ncbi_isolation_source: soil alkaline flat

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: bioMerieux


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Bacteriovoracales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Tanzania

ncbi_genome_representation: partial

ncbi_isolation_source: ponds

ncbi_organism_name: Chryseobacterium indologenes

ncbi_strain_identifiers: StR 01

ncbi_submitter: Sokoine University of Agriculture


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Northwest University


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology


ncbi_country: USA: Midwest

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Chicago


ncbi_country: Bangladesh

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Central Disease Investigation Laboratory (CDIL)


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Shigella flexneri K-227


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Nosocomiicoccus sp. HMSC09A07

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum of adult cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: TEDA School of Biological Sciences and Biotechnology, Nankai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae;x__Enterobacter cloacae subsp. cloacae ATCC 13047


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Hangzhou

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: gastric lavage

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Georgia


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Faecalicatena contorta

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_country: USA: Los Angeles

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Southern California


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Planktothrix sp. FACHB-1355

ncbi_submitter: South China Normal University


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Rhodanobacteraceae bacterium


ncbi_organism_name: Paenibacillus sp. FSL R5-0473

ncbi_submitter: Penn State


ncbi_organism_name: Granulicella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Hoylesella pleuritidis

ncbi_submitter: EMG


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: Heart blood of infected animal

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE)


ncbi_organism_name: Paraglaciecola sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W39821

ncbi_submitter: Broad Institute


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Shigella boydii CDC 3083-94

ncbi_submitter: TIGR


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 84a

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Gemmobacter lanyuensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: China: Shanghai

ncbi_submitter: China Agricultural University


ncbi_organism_name: Prochloron didemni

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: Rongcheng

ncbi_isolation_source: coastal sediment

ncbi_organism_name: Aliidiomarina sp. B3213

ncbi_submitter: Shandong University


ncbi_submitter: University of Waterloo


ncbi_country: Czech Republic: University of Veterinary Sciences Brno

ncbi_isolation_source: caecal content

ncbi_organism_name: Brachyspira innocens

ncbi_submitter: Veterinary Research Institute


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: SC


ncbi_organism_name: Sodaliphilus pleomorphus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas kilonensis


ncbi_isolation_source: sterile tissue

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: CNRS UMR6197


ncbi_organism_name: Bacillus luti

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Henan

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Rhodomicrobiaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Liberiplasma polymorphum

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Latilactobacillus sakei subsp. carnosus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Paracoccus kondratievae


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacillales bacterium UBA6414


ncbi_country: Brazil: Dourados

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Sediminibacterium sp.


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Megasphaera sp.


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-85

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Myxococcales bacterium

ncbi_strain_identifiers: new MAG-85

ncbi_submitter: Micoorganism


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Brucella anthropi

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: AM

ncbi_submitter: INSTITUTE FOR MEDICAL RESEARCH, MALAYSIA


ncbi_organism_name: Chitinophagia bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: USA: MN

ncbi_organism_name: Escherichia albertii

ncbi_submitter: FDA/CFSAN


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_country: South Korea: Sangju-si; Gyeongsangbuk-do

ncbi_isolation_source: freshwater

ncbi_organism_name: Cupriavidus sp. SW-Y-13

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_country: USA: TX

ncbi_isolation_source: patient

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Chlorobiales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;x__environmental samples;s__uncultured Chlorobiales bacterium


ncbi_organism_name: Puia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Finniella inopinata

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_isolation_source: sea urchin

ncbi_organism_name: Winogradskyella echinorum

ncbi_submitter: ocean university of China


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from bioreactor treating oxytetracycline bearing wastewater

ncbi_organism_name: Aeromonas media

ncbi_submitter: Research center for Eco-environmental Sciences, Chinese Academy of Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus MISS6033


ncbi_country: USA: PA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Enorma sp.

ncbi_submitter: AAFC


ncbi_country: USA: Houston; Texas

ncbi_isolation_source: wound

ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: HarveyGAS

ncbi_submitter: Houston Methodist Hospital


ncbi_country: Germany: Sylt

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Rhodoferax ferrireducens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Mitsuokella sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Paenibacillus sp. IHBB 10380

ncbi_submitter: BGI


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium casei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Citrobacter europaeus

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_isolation_source: Colon


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Haifa


ncbi_organism_name: Lacibacter sp.

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: Guatemala

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-a_bin-010

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_submitter: Madurai Kamaraj University


ncbi_country: Australia: Brisbane

ncbi_submitter: USDA


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0068

ncbi_submitter: Broad Institute


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: University of Wyoming


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Christiangramia sp.

ncbi_submitter: EMG


ncbi_isolation_source: slaughterhouse

ncbi_organism_name: Salmonella sp. YT2-20-3

ncbi_submitter: Yangzhou University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_isolation_source: rumen

ncbi_organism_name: Enterococcus faecium EnGen0009


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Ohio

ncbi_isolation_source: Alimentary canal

ncbi_organism_name: Bacteroides sp. 519

ncbi_submitter: The Ohio State University


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_country: India: Khirganga hotspring; Himachal Pradesh; Northern Hiamayas

ncbi_isolation_source: microbial mat

ncbi_organism_name: Calditerrivibrio sp.

ncbi_submitter: University of Delhi


ncbi_country: Japan

ncbi_isolation_source: Seaweed collected at a coast

ncbi_organism_name: Geobacillus thermodenitrificans

ncbi_submitter: Tottori University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_country: France: Normandy

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_country: USA: VA

ncbi_isolation_source: water gallon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Luteibaculaceae bacterium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Teagasc FOod Research Centre


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli UMEA 3033-1

ncbi_submitter: Broad Institute


ncbi_country: USA: FL

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_isolate: AOP42_E1_surf _bin _31

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP42_E1_surf _bin _31

ncbi_submitter: Genoscope


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium Isolate-043 (Harlan)

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Philippines

ncbi_isolation_source: lumbar drain tip

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Luke's Medical Center


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Nanjing University of Chinese Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_submitter: the First Affiliated Hospital of Guangzhou Medical University


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bilophila wadsworthia


ncbi_organism_name: Stutzerimonas sp. CQPMC-PStu

ncbi_strain_identifiers: CQPMC-PStu

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Dysgonomonas sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: FCB group bacterium

ncbi_submitter: Lab of Microbial Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__unclassified FCB group;s__FCB group bacterium


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: University of Bristol


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Capnocytophaga sputigena ATCC 33612

ncbi_strain_identifiers: Capno

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga sputigena;x__Capnocytophaga sputigena ATCC 33612


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: EPFL


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 353

ncbi_submitter: SC


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: IHU Mediterranean Infection


ncbi_country: China: Beijing

ncbi_submitter: National institutes of Food and Drug Control


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: faeces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Quadram Bioscience Institute


ncbi_country: Russia: Vologda region

ncbi_isolation_source: eutrophic edge of the mire

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Henan

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sporangiiformans

ncbi_strain_identifiers: NEAU-SSA 1

ncbi_submitter: School of life science


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_submitter: Tohoku univ.


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Xi an

ncbi_isolation_source: cold noodles in sauce samples

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Atopobium sp. UBA7741


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Madagascar: Antananarivo

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Institut Pasteur de Madagascar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Pakistan

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: FDA


ncbi_country: China

ncbi_isolation_source: hydrothorax

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Hangzhou

ncbi_organism_name: Pseudomonas sp. P20


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: sea water [ENVO:00002149]

ncbi_organism_name: Lentimonas sp. CC6

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__Verrucomicrobiota incertae sedis;g__Lentimonas;x__unclassified Lentimonas;s__Lentimonas sp. CC6


ncbi_country: USA: Florida

ncbi_isolation_source: Bovine

ncbi_organism_name: Bacillus anthracis str. V770-NP-1R

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. V770-NP-1R


ncbi_country: Peru: Hospital Apoyo Iquitos

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. HAI0156


ncbi_country: Bahamas: Graham s Harbor; Cockburn Town; San Salvador

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: University of Tennessee


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: food

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Australia

ncbi_organism_name: Atopobium fossor DSM 15642

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Atopobium;s__Atopobium fossor;x__Atopobium fossor DSM 15642


ncbi_country: USA: Tennessee

ncbi_isolation_source: RECTAL

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: Belgium

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Serbia: Belgrade

ncbi_isolation_source: tip of aspiration catheter

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: Denmark: Lyngby; Backyard

ncbi_organism_name: Streptomyces sp. NBC_00038

ncbi_submitter: Technical University of Denmark


ncbi_country: Denmark: Livoe; Ege-Hasselskoven

ncbi_organism_name: Streptomyces sp. NBC_01306


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Tianjin

ncbi_isolation_source: feces

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Iron mountain; Richmond Mine; California

ncbi_isolation_source: Richmond mine

ncbi_organism_name: Leptospirillum sp. Group II 'CF-1'

ncbi_submitter: Universidad de Santiago de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Leptospirillum;x__Leptospirillum sp. Group II;s__Leptospirillum sp. Group II 'CF-1'


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_country: Finland

ncbi_organism_name: Streptococcus halichoeri

ncbi_submitter: Helsinki University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Japan:Miyazaki; Yae river

ncbi_isolation_source: river sediment

ncbi_organism_name: Geobacter sulfurreducens

ncbi_submitter: Department of Biochemistry and Applied Biosciences, Faculty of Agriculture, University of Miyazaki


ncbi_country: Japan

ncbi_organism_name: Pseudonocardia sp. N23

ncbi_submitter: Bio-Environmental Engineering Lab, Department of Sustainable Energy and environmental Engineering, Graduate School of Engineering, Osaka university


ncbi_organism_name: Virgibacillus massiliensis

ncbi_submitter: URMITE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_country: USA: Berry s Creek; New Jersey

ncbi_organism_name: Shewanella sp. BC20

ncbi_submitter: Rutgers University


ncbi_country: China: Shanghai City

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Anode biofilm

ncbi_organism_name: Dysgonomonas sp. UBA7710

ncbi_submitter: University of Queensland


ncbi_organism_name: Aeromonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Quaid i Azam University


ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Paraburkholderia fungorum

ncbi_submitter: INRAE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Manchester


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Sulfitobacter sp. 1A12157

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- B4coas_bin-1415

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Psychrobacter sp. VH5

ncbi_submitter: Dalian University of technology


ncbi_organism_name: Enterovibrio calviensis

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Adlercreutzia sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: USA

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_assembly_name: IMG-taxon 2622736628 annotated assembly

ncbi_organism_name: Azospirillum lipoferum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Gardnerella sp.


ncbi_country: South Korea

ncbi_isolation_source: oral

ncbi_organism_name: Pantoea sp. SM3640

ncbi_submitter: Korea University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_submitter: Loyola University Chicago


ncbi_country: Yugoslavia

ncbi_organism_name: Pseudomonas syringae pv. coriandricola

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. coriandricola


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Atlantic Ocean: North Pond on the west flank of Mid-Atlantic Ridge

ncbi_isolation_source: pelagic marine sediments

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Bergen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Mariniphaga sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_organism_name: Streptomyces sp. CB00316

ncbi_submitter: The Scripps Research Institute


ncbi_organism_name: Moraxella sp. Pampa

ncbi_strain_identifiers: Pampa

ncbi_submitter: Brazilian Agricultural Research Corporation


ncbi_country: Germany


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Poland

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium leguminosarum;x__Rhizobium leguminosarum bv. phaseoli;x__Rhizobium leguminosarum bv. phaseoli FA23


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: DOE JGI


ncbi_country: Australia: Queensland

ncbi_isolation_source: nose of healthy child

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: The University of Queensland


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_submitter: Universtity Hospital Cologne


ncbi_country: USA: MD

ncbi_isolation_source: intestine goat

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: MI

ncbi_isolation_source: brain pigeon


ncbi_organism_name: Finegoldia magna

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Colombia

ncbi_isolation_source: Feed of swine farm

ncbi_submitter: Universidad Nacional de Colombia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Streptomyces sp. NPDC000877

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Flavobacterium amnicola

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_country: Pakistan

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium bangladeshense

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: China: Nanjing

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: Proximal colon


ncbi_country: South Africa: Westen Cape

ncbi_isolation_source: Burn unit

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Candidatus Alistipes avistercoris


ncbi_organism_name: Devosia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Candidatus Evtepia excrementipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;s__Candidatus Evtepia excrementipullorum


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Kyungpook National University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Dorea acetigenes

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas sp. WG16

ncbi_submitter: SCAU


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Ireland

ncbi_submitter: University College Cork


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_organism_name: Candidatus Deianiraeaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Deianiraeaceae;x__unclassified Candidatus Deianiraeaceae;s__Candidatus Deianiraeaceae bacterium


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Toho University


ncbi_country: USA: Texas

ncbi_isolation_source: bovine feces

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Borreliella bissettiae

ncbi_strain_identifiers: Pgeb

ncbi_submitter: Institute for Genome Sciences