ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Samoa

ncbi_genome_representation: full

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_country: Kenya: Talek

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Endomicrobiellum neotermitis

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Gladstone Institutes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: abdominal cerebrospinal fluid pseudocyst

ncbi_organism_name: Mycobacterium sp. NAZ190054

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Austria

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_country: USA: Rochester

ncbi_isolation_source: face mask

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Rochester Institute of Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter freundii complex sp. 2024EL-00748


ncbi_assembly_level: Chromosome

ncbi_isolation_source: class II chancroid

ncbi_organism_name: [Haemophilus] ducreyi

ncbi_submitter: Indiana University School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_organism_name: Escherichia coli EC4013

ncbi_submitter: Institute for Genome Sciences


gtdb_type_species_of_genus: t

ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: seawater 50 meter in depth

ncbi_organism_name: Marinifaba aquimaris

ncbi_refseq_category: reference genome

ncbi_submitter: microbiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: China: Shaanxi

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_level: Complete Genome

ncbi_country: Sweden

ncbi_isolation_source: Blood

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Amycolatopsis lurida

ncbi_submitter: Tarim university


ncbi_organism_name: Streptomyces sp. NPDC060198

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Japan Institute for Health Security


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Alistipes inops

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_assembly_name: freshwater MAG --- KR1_bin-0332

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Austin; TX

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Leadbetterella sp.

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Rikenella sp.


ncbi_country: Switzerland: Mt Terri URL; St-Ursanne

ncbi_isolation_source: Opalinus Clay rock

ncbi_organism_name: Peptococcaceae bacterium BICA1-8

ncbi_submitter: EPFL


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptococcus parasanguinis F0405

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Neisseria animaloris

ncbi_submitter: Wadsworth Center / NYSDOH


ncbi_country: China: Sichuan

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Acinetobacter seifertii


ncbi_organism_name: uncultured Aquifex sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: inserm


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium UBA5901

ncbi_submitter: University of Queensland


ncbi_country: Netherlands

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Birgitta Duim's shared submissions


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Nigeria

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Cepheid


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_organism_name: Ancylobacter amanitiformis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0622

ncbi_submitter: Broad Institute


ncbi_organism_name: Neisseria subflava

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: chicken intestinal contents

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_organism_name: Streptomyces sp. NPDC021608

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Shanghai

ncbi_isolation_source: urine

ncbi_submitter: Xinhua Hospital Affiliated to Shanghai Jiaotong University School of Medicine


ncbi_organism_name: Leptothrix ochracea

ncbi_submitter: University of Delaware


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Pseudomonas syringae pv. aptata

ncbi_submitter: University of Belgrade, Faculty of Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. aptata


ncbi_country: Kuwait

ncbi_isolation_source: hydrocarbon-contaminated desert sands

ncbi_organism_name: Shinella curvata

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Aquaticitalea sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Anaerolineaceae bacterium UBA4781

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Alistipes communis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Flavobacteriales bacterium UBA2382


ncbi_isolation_source: Vaginal-rectal

ncbi_submitter: Novartis Vaccines


ncbi_country: Spain

ncbi_isolation_source: cheese

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: UCM


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_country: Mozambique

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Polystyrene-feeding group superworm feces

ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: The University of Queensland


ncbi_assembly_name: freshwater MAG --- MJ120516A_bin-353

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: USA: Lake Superior

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: University of Chicago


ncbi_isolation_source: garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Vibrio cholerae O139

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_country: USA: Bethesda

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: USA: Washington; DC

ncbi_isolation_source: aquatic habitat

ncbi_organism_name: Erythrobacter sp. WG

ncbi_strain_identifiers: WG

ncbi_submitter: The George Washington University


ncbi_organism_name: Paraburkholderia caballeronis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Caldimicrobium sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_submitter: University of Florida


ncbi_country: United Kingdom

ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1281


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum from 11 year old male patient with diagnosed caseous pneumonia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_country: Argentina

ncbi_isolation_source: herb

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Comamonas sp. lk

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolate: clinical strain from anonymous patient of Limoges Hospital

ncbi_isolation_source: pleural fluid

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: UNIVERSITY OF OXFORD


ncbi_isolation_source: Seed

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: INRAE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Pseudomonas putida

ncbi_strain_identifiers: KT2440 Design 1a post-ALE

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Streptomyces sp. NPDC001292

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: Albidovulum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella sp. K5-306

ncbi_submitter: Institute of Marine research


ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: University of Parma


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Marisimplicoccus sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Cryomorphaceae;g__Candidatus Marisimplicoccus;x__unclassified Candidatus Marisimplicoccus;s__Candidatus Marisimplicoccus sp.


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Roseinatronobacter sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Rumen uncultured genome RUG13452

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: freshwater MAG --- MJ130617B_bin-078

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: BILS


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_submitter: Stanford University


ncbi_country: Australia: Perth

ncbi_isolation_source: human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Penn State University


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4386

ncbi_submitter: University Hospital Regensburg


ncbi_submitter: Xinjiang Agricultural University


ncbi_country: USA: OR

ncbi_isolation_source: chicken breast

ncbi_submitter: FDA


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudolactococcus chungangensis

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: Clinical; cystic fibrosis patient

ncbi_organism_name: Burkholderia sp. BCC0044

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR324 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;x__environmental samples;s__uncultured SAR324 cluster bacterium


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: AAFC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: McMaster University


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF TEXAS SOUTHWESTERN


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_country: USA: Missouri; St. Louis

ncbi_isolation_source: urine

ncbi_submitter: Washington University School of Medicine


ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: Rumen uncultured genome RUG14317

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sediminibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Algeria

ncbi_isolation_source: ready-to-eat foods

ncbi_submitter: Institute of Sciences of Food Production (ISPA)


ncbi_country: Mali

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant africanum


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Poland: Jaworzno

ncbi_isolation_source: industrial wastewater treatment plant

ncbi_organism_name: Pseudomonas laurylsulfatiphila

ncbi_submitter: Institute of Biochemistry and Biophysics Polish Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Stutzerimonas kunmingensis


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_isolation_source: mucus

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: USDA-ARS-USMARC


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: Gloucester Marine Genomics Institute


ncbi_organism_name: Erythrobacter sp. T5W1-R

ncbi_submitter: Slippery Rock University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Kenya: Nairobi

ncbi_isolation_source: vaginal microbiome

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: Unknown

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 29.O.08


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: Small intestine

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Aestuariivirgaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Trunk River; Woods Hole; MA

ncbi_isolation_source: Estuary

ncbi_organism_name: Rhodovulum sulfidophilum

ncbi_submitter: Washington University in St Louis


ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_organism_name: Raoultella ornithinolytica

ncbi_strain_identifiers: Gar CS 37

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Blautia sp. AM16-16B

ncbi_submitter: BGI


ncbi_country: South Korea: offshore of Yeosu; Jeollanam-do

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Corynebacterium atrinae

ncbi_submitter: Bielefeld University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Tarim Basin

ncbi_isolation_source: Saline-alkali soil

ncbi_organism_name: Halomonas sp. NO4

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_submitter: national health research institutes


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Centers for Disease Control and Prevention.  Division of Healthcare Quality Promotion


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Clostridiaceae bacterium


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium acidiphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Streptomyces sp. SP17BM10

ncbi_submitter: Washington University in St. Louis


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: CDPHE SARS-CoV-2 submissions


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Coprococcus comes

ncbi_submitter: SC


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: Russia: Sakhalin; Daginskiye Thermal Springs

ncbi_isolation_source: enrichment culture from terrestrial mud volcano

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: China CDC


ncbi_submitter: WASHINGTON UNIVERSITY IN ST. LOUIS


ncbi_country: Italy

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tongji University


ncbi_isolate: aOnit

ncbi_organism_name: Arsenophonus nasoniae

ncbi_strain_identifiers: aOnit

ncbi_submitter: University of Liverpool


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Lysinibacillus xylanilyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Drexel University College of Medicine


ncbi_organism_name: Alistipes dispar

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Treponema sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Brucella amazoniensis

ncbi_submitter: INSERM U1047


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Guizhou

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: New York City MTA subway

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: Distal colon

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: Oman

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Chulalongkorn University


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Extensimonas vulgaris

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: Florida

ncbi_organism_name: Rickettsia prowazekii str. GvF12

ncbi_submitter: Naval Medical Research Center


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: ETH Zurich


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Rhizobacter sp. Root1238

ncbi_submitter: Max Planck Institute for Plant Breeding Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp. Root1238


ncbi_country: South Korea: Seoul

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Klebsiella sp. CLS1-2

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: water: water; running

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: EMG


ncbi_organism_name: Polyangiaceae bacterium


ncbi_country: South Korea: Gwangju-si

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter duratus

ncbi_submitter: Seoul Women's University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Anhui; Tongling

ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3642

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3642


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. TMB1-7

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Argentina: Castelar

ncbi_isolation_source: dust

ncbi_organism_name: Streptomyces antimycoticus

ncbi_submitter: USDA/ARS/NCAUR


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Candidatus Rifleibacteriota bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rifleibacteriota;x__unclassified Candidatus Rifleibacteriota;s__Candidatus Rifleibacteriota bacterium


ncbi_organism_name: Duncaniella freteri


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Boston

ncbi_organism_name: Ideonella sp. MAG2

ncbi_submitter: Northeastern University


ncbi_organism_name: Mitsuaria sp. BK041

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Liaoning

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCBAU 11361

ncbi_strain_identifiers: CCBAU 11361

ncbi_submitter: China Agricultural University


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Sinorhizobium medicae

ncbi_submitter: ARRIAM


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: South Africa: Bloemfontein; Free State

ncbi_isolation_source: feather waste from poultry processing plant

ncbi_organism_name: Chryseobacterium pennipullorum

ncbi_submitter: University of the Free State


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Abiotrophia sp.

ncbi_submitter: EMG


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU1 evolved under selective conditions; BHI evolved gen 950 Population GS

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: RU1 BHI11

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_country: Belgium: Wallonia

ncbi_isolation_source: feces

ncbi_submitter: University of Liege


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: MO

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolate: AOP25_B1_surf _bin _4

ncbi_organism_name: Brachybacterium alimentarium

ncbi_strain_identifiers: AOP25_B1_surf _bin _4

ncbi_submitter: Genoscope


ncbi_organism_name: Nocardia beijingensis NBRC 16342

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira santarosai;x__Leptospira santarosai serovar Arenal;x__Leptospira santarosai serovar Arenal str. 11


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0329R

ncbi_submitter: Broad Institute


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Forsyth Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Foggia


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: feces of bat

ncbi_organism_name: Bartonella sp. HY329

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Chile: Santiago

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_country: India

ncbi_organism_name: Pantoea stewartii

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: USA: MN

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Vallitaleaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: France

ncbi_isolation_source: urine

ncbi_submitter: Rennes Hospital


ncbi_country: Czech Republic

ncbi_isolation_source: milk filter

ncbi_submitter: CEITEC VFU


ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella sp. C3230


ncbi_organism_name: Paenibacillus sp. FSL H8-0104

ncbi_submitter: Penn State


ncbi_assembly_name: IMG-taxon 2642422587 annotated assembly

ncbi_organism_name: Halanaerobium congolense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: the hong kong university of science and technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine


ncbi_country: Egypt

ncbi_isolation_source: Raw milk cheese

ncbi_submitter: FDA/CFSAN


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Ghana: Nima Market; Accra

ncbi_isolation_source: wagashi (unripened soft cheese)

ncbi_strain_identifiers: NRWCIIIA

ncbi_submitter: Alborada Research Fund

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Legon


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA

ncbi_isolation_source: Wound/Abscess

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Taiwan

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: Antarctica: Larsemann Hills

ncbi_isolation_source: microbial mat

ncbi_organism_name: Phormidesmis priestleyi ULC007

ncbi_submitter: University of Liege


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Gaiellales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Novosphingobium meiothermophilum

ncbi_submitter: EMG


ncbi_organism_name: Mycoplasma leachii

ncbi_submitter: University of Bern


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Roseburia intestinalis


ncbi_organism_name: Salmonella sp. NW353

ncbi_submitter: Sichuan University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudarthrobacter sp. NPDC058329

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Catenibacterium sp.


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bilophila wadsworthia


ncbi_isolate: AOP25_F1_surf _bin _7

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP25_F1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Litorivicinus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: water

ncbi_organism_name: Ktedonobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Human Stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: nasopharynx


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_name: Salmonella enterica CVM N38921-SQ v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_submitter: Ocean University of China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 8960

ncbi_submitter: University of Exeter


ncbi_country: Spain

ncbi_isolation_source: water from rearing environment of Oncorhynchus mykiss

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Facultad de Veterinaria, Universidad Complutense de Madrid


ncbi_country: China: Huaian

ncbi_isolation_source: pig slaughterhouse

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Reading


ncbi_organism_name: Enterococcus faecium


ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Brevundimonas sp. EYE_349

ncbi_submitter: China CDC


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_country: Brazil: Campinas; SP

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_strain_identifiers: HiX

ncbi_submitter: State University of Campinas


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Seoul

ncbi_isolation_source: vegetable food

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: South Korea

ncbi_isolation_source: paddy soil

ncbi_organism_name: Oryzibacter oryziterrae

ncbi_submitter: Mokwon University, Korea


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Qingdao Agricultural University


ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: College of Resources and Environmental science


ncbi_isolation_source: CSF


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Thailand: Satun

ncbi_isolation_source: ground water

ncbi_organism_name: Leeia speluncae

ncbi_submitter: National Center for Genetic Engineering and Biotechnology (BIOTEC)


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: USA

ncbi_organism_name: Escherichia sp. KCJ4943

ncbi_submitter: University of Florida


ncbi_organism_name: Phycisphaerae bacterium


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Kenya


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Candidatus Parvibacillus calidus

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Mexico

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio antiquarius

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio antiquarius


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: ocean water

ncbi_organism_name: Prochlorococcus marinus str. MIT 1313

ncbi_submitter: MIT

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Prochlorococcaceae;g__Prochlorococcus;s__Prochlorococcus marinus;x__Prochlorococcus marinus str. MIT 1313


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Candidatus Thioglobus sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__environmental samples;s__uncultured Candidatus Thioglobus sp.


ncbi_country: India: Madhya Pradesh; Sehore; Padli

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Michigan State University


ncbi_organism_name: Streptococcus agalactiae BSU253

ncbi_submitter: The J. Craig Venter Institute


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microbacterium pseudoresistens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Ryaniibacteriota;s__Candidatus Ryanbacteria bacterium RIFCSPHIGHO2_02_FULL_48_12


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Brazil: Ceara

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Universidade Federal de Pelotas


ncbi_organism_name: Streptomyces sp. NBC_00453

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Clackamas County; Oregon

ncbi_organism_name: Rathayibacter sp. AY2B5

ncbi_submitter: Oregon State University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas sp. EL_65y_Pfl2_R95

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dialister succinatiphilus


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Streptomyces sp. NPDC101110

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolate: spongia

ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_submitter: BGI Research


ncbi_organism_name: Streptomyces sp. NPDC048350


ncbi_submitter: University of Pretoria


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-33

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Planctomycetota bacterium

ncbi_strain_identifiers: new MAG-33

ncbi_submitter: Micoorganism


ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Butyricimonas virosa


ncbi_assembly_name: Rumen uncultured genome RUG10914

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: INRA


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: gut

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus Rd.545

ncbi_submitter: Broad Institute


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_submitter: EMG


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_submitter: University of Guelph


ncbi_country: Laos

ncbi_isolation_source: river sediment

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Bern


ncbi_country: USA

ncbi_isolation_source: Air filter

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides sp. 1_1_14


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Shinella sp. 838

ncbi_submitter: South China Normal University


ncbi_organism_name: Mordavella massiliensis

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: the seqafrica consortium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: INRA


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Bioplatforms Australia


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: Canada: Lacombe

ncbi_organism_name: Enorma burkinafasonensis

ncbi_submitter: AAFC


ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidetes bacterium UBA1312

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium UBA1312


ncbi_country: Colombia

ncbi_isolation_source: Surgical wound

ncbi_organism_name: Staphylococcus aureus DAR5795

ncbi_submitter: Broad Institute


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Arthrobacter sp. zg-Y1219

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_assembly_name: Rumen uncultured genome hRUG865

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: India: Vellore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Verrucomicrobium sp. 3C

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anaerostipes sp.


ncbi_country: Malaysia: Carey Island

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus sp. RB3

ncbi_submitter: Universiti Malaya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RB3


ncbi_isolation_source: microbial mat

ncbi_organism_name: Synechococcales cyanobacterium PMM_0022

ncbi_submitter: University of Liege


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Roseitalea porphyridii

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: MD

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Azospirillum sp. OGB3


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Kenya: Laikipia

ncbi_isolation_source: Camel

ncbi_submitter: University of Zurich


ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: tissue left hip

ncbi_organism_name: Staphylococcus sp. HMSC067F07

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Germany: near Munchenroda; Jena

ncbi_isolation_source: pine forrest soil between two spruce trees

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Shandong

ncbi_organism_name: Pantoea sp. DY-17

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_assembly_name: Burkholderia sp. LMG 29320

ncbi_organism_name: Caballeronia fortuita

ncbi_submitter: LM-UGent


ncbi_country: Japan:Shizuoka; Higashi-izu; Arayu

ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Tepidiforma sp.

ncbi_submitter: RIKEN-BRC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_assembly_name: Mira de-novo assembly

ncbi_organism_name: Bifidobacterium breve 31L

ncbi_submitter: University of Parma


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Rhizobium sp. AN64

ncbi_submitter: University of Massachusetts Amherst


ncbi_country: Australia

ncbi_isolation_source: Riverslea oil field

ncbi_organism_name: Mahella australiensis 50-1 BON

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Thermoanaerobacterales Family IV. Incertae Sedis;g__Mahella;s__Mahella australiensis;x__Mahella australiensis 50-1 BON


ncbi_country: China

ncbi_isolation_source: bulk soil of maize

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01979

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: biofilm

ncbi_organism_name: Actinobacteria bacterium UBA2279

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium UBA2279


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: EMG


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Micromonospora maris AB-18-032

ncbi_submitter: CSBL at Korea University


ncbi_assembly_name: MDR VRFPA09

ncbi_country: India: Chennai

ncbi_isolation_source: blood sample from patient with septicaemia

ncbi_organism_name: Pseudomonas aeruginosa VRFPA09

ncbi_submitter: SANKARA NETHRALAYA, VISION RESEARCH FOUNDATION


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Tibet; Lhasa

ncbi_organism_name: Bacillus sp. LNXM12-1

ncbi_submitter: Rainer Borriss's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. LNXM12-1


ncbi_country: Uganda

ncbi_organism_name: Mycolicibacterium conceptionense

ncbi_submitter: JCVI


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR


ncbi_country: Spain: beach on the East coast of Spain; Valencia

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio aestivus

ncbi_strain_identifiers: CAIM 1861

ncbi_submitter: CIAD, A.C. Mazatlan Unit for Aquaculture


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Tannerella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Beijing University of Chemical Technology


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: China: Hangzhou

ncbi_submitter: China Agriculture University


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Lawsonibacter sp. LCP25S3_E11


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Parma


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC127020

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Salmonella sp. SKLX094351

ncbi_submitter: Zhejiang university


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Maricaulis sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: wastewater

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Shanghai Jiaotong University


ncbi_country: Brazil: Sao Paulo; Ribeirao Preto

ncbi_isolation_source: Tracheal Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ribeirao Preto Medical School - USP


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_submitter: University of Bern


ncbi_country: Switzerland: Mt Terri URL; St-Ursanne

ncbi_isolation_source: Opalinus Clay rock porewater BRC-3 borehole

ncbi_organism_name: Alphaproteobacteria bacterium BRH_c36


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: University of Michigan


ncbi_organism_name: Dorea longicatena


ncbi_organism_name: Candidatus Acutalibacter stercoravium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_country: South Korea

ncbi_isolation_source: seafood

ncbi_organism_name: Jeotgalibacillus alimentarius

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Enterococcus avium

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-0146

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Erwinia sp. E_sp_B01_3

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: Australia

ncbi_isolation_source: PinotGris

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: USA: Asheville; NC

ncbi_isolation_source: soil from walnut tree

ncbi_organism_name: Stigmatella ashevillensis

ncbi_submitter: University of Mississippi


ncbi_country: Ethiopia

ncbi_organism_name: Pseudomonas savastanoi pv. phaseolicola

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. phaseolicola


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Alphaproteobacteria bacterium UBA4684

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Cambridge; Massachusetts

ncbi_isolation_source: oral cavity

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium oral taxon 955


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Church and Dwight


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Massachusetts; Cambridge

ncbi_isolation_source: Cephalic recording chamber

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: Guangxi

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. CCBAU 53351

ncbi_strain_identifiers: CCBAU 53351

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Streptomyces sp. KL2

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: China

ncbi_isolation_source: isolated from a Glasser s disease outbreak farm

ncbi_organism_name: Glaesserella parasuis SH0165

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Israel: Rehovot

ncbi_organism_name: Albidovulum denitrificans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology, Sydney


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Hospital Tuebingen


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Florida

ncbi_isolation_source: root nodules

ncbi_organism_name: Pseudomonas sp. R3.Fl

ncbi_submitter: University of Tartu


ncbi_country: United Kingdom

ncbi_isolation_source: Midstream specimen of urine

ncbi_submitter: Bournemouth University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Shenzhen

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Albidovulum sediminis

ncbi_submitter: Shenzhen University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: stool sample from patient with hemolytic uremic syndrome (HUS)

ncbi_organism_name: Escherichia coli O104:H4 str. LB226692

ncbi_submitter: Life Technologies

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. LB226692


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Succinivibrionaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: USA: New Mexico|USA; NewMexico

ncbi_isolation_source: Arm wound; 24-year-old male

ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: CDC


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: University of Chicago


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Seoul National University Hospital


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: itra-abdominal tract infection

ncbi_submitter: AstraZeneca


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas at Austin


ncbi_submitter: University of Hyderabad


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: Penn State University


ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella variicola

ncbi_strain_identifiers: MGH 80

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University Hospital Regensburg


ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_organism_name: Piscirickettsia salmonis EM-90

ncbi_submitter: University of Concepcion


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Citrobacter freundii


ncbi_organism_name: Streptomyces heliomycini

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: FDA Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Bartonella sp. OC16QHHD

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: Enterococcus sp. DIV0206e


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: feces

ncbi_organism_name: Butyricicoccus sp. AM29-23AC

ncbi_submitter: BGI


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture


ncbi_country: South Korea: Seoul

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yonsei University


ncbi_country: Netherlands

ncbi_organism_name: Enterococcus faecium EnGen0038

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_isolation_source: barn dust sample

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacterium sp. 14-2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. 14-2


ncbi_country: USA: Michigan

ncbi_organism_name: Pseudomonas sp. PvP100

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: Colorado State University


ncbi_assembly_name: BPT

ncbi_country: Australia

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Burkholderia pseudomallei MSHR1000

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Region Zealand


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_strain_identifiers: Fiocruz LV2750

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2750


ncbi_country: Russia: Astrachan

ncbi_isolation_source: water sample

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russia Research Anti-Plague Institute "Microbe"


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium