ncbi_country: USA: Washington

ncbi_isolation_source: diseased host

ncbi_organism_name: Flavobacterium psychrophilum FPG3

ncbi_submitter: Ontario Veterinary College, University of Guelph


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Pacific Ocean

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Microgenomates bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Candidatus Microgenomates;s__Candidatus Microgenomates bacterium


gtdb_representative: f

ncbi_organism_name: Kaistella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Mycolicibacterium lutetiense

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Soil

ncbi_organism_name: Pseudomonas sp. Bi70

ncbi_submitter: University of Dundee


ncbi_assembly_level: Scaffold

ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Pontimonas sp.

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: China

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: soil of paddy field

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Staphylococcus capitis


ncbi_country: Mali: Koulikoro

ncbi_isolation_source: stool sample

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Duganella violaceipulchra


ncbi_isolation_source: stool

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: New York

ncbi_isolation_source: feces

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro;x__Salmonella enterica subsp. enterica serovar Cerro str. FSL R8-0235


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: MES reactor inoculated with Red Sea brine pool sample

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: KAUST


ncbi_assembly_name: Rumen uncultured genome RUG11855

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Japan: Hokkaido

ncbi_organism_name: Spirochaetota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Capnocytophaga gingivalis

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG11751

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: freshwater

ncbi_organism_name: Sphaerospermopsis sp. FACHB-1194

ncbi_submitter: South China Normal University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Flavobacterium sp.


ncbi_organism_name: uncultured Leptotrichiaceae bacterium


ncbi_country: Czech Republic: Hradec Krlov

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Charles University in Prague


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Geminicoccus sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Department of Pharmacy, Shaoxing Hospital of Traditional Chinese Medicine Affiliated to Zhejiang Chi


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_country: Germany

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;s__Candidatus Nealsonbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_13


ncbi_assembly_name: freshwater MAG --- Ja1-D2_bin-0710

ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: BILS


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: University of Ibadan, Nigeria


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nagoya University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: India: Punjab

ncbi_isolation_source: Rice seed

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Innermogolia

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: Colombia: Barranquilla

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured Acutalibacteraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Roseomonas mucosa

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: USA: MD

ncbi_isolation_source: environment

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Willows Beach; Victoria; BC

ncbi_isolation_source: algae surface

ncbi_organism_name: Pseudoalteromonas sp. FUC4

ncbi_submitter: University of Victoria


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Alberta


ncbi_country: China: Anhui

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. TL12

ncbi_submitter: Huaibei Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. TL12


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Illinois

ncbi_isolation_source: Lymph node necropsy

ncbi_submitter: Michigan State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;sb__Mycobacterium tuberculosis subsp. tuberculosis


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospira eligens

ncbi_submitter: BGI


ncbi_country: India: Assam

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Rhizobium sp. BK060

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: EMG


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: Jagannath University


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Guelph

ncbi_isolation_source: Wastewater treatment plant

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Ezakiella sp.

ncbi_submitter: NIH/NHGRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Ezakiella;x__environmental samples;s__uncultured Ezakiella sp.


ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_country: New Zealand: Hikurangi Margin

ncbi_isolation_source: Glendhu Ridge methane seep

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: GNS Science


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_isolation_source: kefir

ncbi_organism_name: Bacillus sp. OG2

ncbi_submitter: SysMilk

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. OG2


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Rhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Planktothrix sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Ectopseudomonas chengduensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. OZ13

ncbi_submitter: Northwest Minzu University


ncbi_organism_name: Candidatus Avilachnospira sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Avilachnospira;x__unclassified Candidatus Avilachnospira;s__Candidatus Avilachnospira sp.


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Coxiella-like endosymbiont

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_assembly_level: Chromosome

ncbi_organism_name: Serratia fonticola

ncbi_submitter: Federal Research Center for Fundamental and Translational Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Switzerland

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: Czech Republic

ncbi_isolation_source: inner organs

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Candidatus Paceibacter sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;f__Candidatus Paceibacteraceae;g__Candidatus Paceibacter;x__unclassified Candidatus Paceibacter;s__Candidatus Paceibacter sp.


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Urine

ncbi_organism_name: Actinomycetaceae bacterium UMB8039B

ncbi_submitter: Loyola University Chicago


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Opitutus sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Switzerland: Bern

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Bern


ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Lund University


ncbi_country: USA: DC

ncbi_isolation_source: Peripheral blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Presidente Prudente

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Leuconostoc citreum


ncbi_organism_name: Clostridioides difficile DA00310

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: MN

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fraseribacteriota;s__Candidatus Fraserbacteria bacterium RBG_16_55_9


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Sphingobium fuliginis

ncbi_submitter: Yokohama City University

ncbi_type_material_designation: assembly from heterotypic synonym type material


gtdb_type_species_of_genus: t

ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal vent chimney structure

ncbi_organism_name: Nitrosophilus alvini

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Science, Hokkaido University


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: WA

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: University of Washington


ncbi_assembly_name: NCPPB 1759

ncbi_isolate: NCPPB 1759

ncbi_organism_name: Xanthomonas citri

ncbi_strain_identifiers: NCPPB 1759

ncbi_submitter: nivip


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Rhodanobacter sp. IGA1.0

ncbi_submitter: Northest Institute of Geography and Agroecology, Chinese Academy of Sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: Lachnoclostridium sp. An196

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: Marinoscillum sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_organism_name: Qipengyuania citrea

ncbi_submitter: University of Southern California


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-b_bin-555

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chryseobacterium sp. 2987

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG12685

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Israel

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KPC 20

ncbi_submitter: TLVMC


ncbi_isolation_source: soil

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- Ki2-D1_bin-0690

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_assembly_name: Salmonella enterica CVM N43450 v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Kentucky

ncbi_submitter: FDA


ncbi_organism_name: Parolsenella catena

ncbi_submitter: University of Trento


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnobacterium sp.


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Pseudoneobacillus rhizosphaerae

ncbi_submitter: Institut Pasteur


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Brumicola blandensis

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: USA: Riverside; Ca

ncbi_isolation_source: Nectary

ncbi_organism_name: Apilactobacillus micheneri

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Italy

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Sapienza University of Rome


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Stellenbosch University


ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Psychrobacter sp. KH172YL61

ncbi_submitter: Keio University


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 343

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: Wound secretion

ncbi_submitter: Zhejiang University


ncbi_country: Viet Nam

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3052

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Italy: Gulf of Naples; Tyrrhenian sea

ncbi_isolation_source: seawater

ncbi_organism_name: Leeuwenhoekiella parthenopeia

ncbi_submitter: University of Naples Federico II


ncbi_organism_name: Sphingobacterium sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Longicatena sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Novome Biotechnologies


ncbi_country: China: Zhengzhou

ncbi_isolation_source: peritoneal drainage fluid

ncbi_submitter: First Affiliated Hospital of Zhengzhou University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Manitoba


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: USA: Oklahoma

ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Desulfacinum sp.

ncbi_submitter: The Ohio State University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: IA

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA17227

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Onishia taeanensis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella sp. SAL4456

ncbi_submitter: Zhejiang university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital affiliated to Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Roseateles sp. L2-2

ncbi_submitter: Sichuan Normal University


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UIUC


ncbi_organism_name: Mangrovibacterium sp.

ncbi_submitter: University of Waterloo


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Alistipes onderdonkii


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_isolation_source: lake water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Activated sludge form a lab-scale nitrification reactor

ncbi_organism_name: Proteobacteria bacterium UBA1847

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA1847


ncbi_country: Australia: Great Barrier Reef


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_submitter: University of Southern California


ncbi_country: Australia: Orpheus Island

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Dialister sp.


ncbi_isolation_source: blood

ncbi_organism_name: Bartonella henselae JK 50

ncbi_strain_identifiers: JK 50

ncbi_submitter: Broad Institute


ncbi_isolate: metabat2_coassembly_bwa.136 MAG

ncbi_organism_name: Candidatus Blautia faecavium

ncbi_strain_identifiers: metabat2_coassembly_bwa.136 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: University of Chicago


ncbi_country: China: Wuhan

ncbi_isolation_source: leaves

ncbi_organism_name: Pseudomonas sp. SHLB3

ncbi_submitter: Hubei University


ncbi_country: USA: NY

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus DAR1278


ncbi_organism_name: Variovorax atrisoli

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Paenibacillaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Turkey

ncbi_isolation_source: throat swab

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_country: Canada: Ontario

ncbi_isolation_source: plant matter [ENVO:01001121]

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: shanghai ocean university


ncbi_assembly_name: Salmonella enterica CVM N51294 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Kentucky

ncbi_submitter: FDA


ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: 2901PM;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pantoea sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Japan: Tokyo

ncbi_isolation_source: soil

ncbi_organism_name: Azospirillum sp. TSO5

ncbi_submitter: University of Minnesota


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: Germany

ncbi_isolation_source: Spoiled beer

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of Alberta


ncbi_organism_name: Pelolinea sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Brazil:Sao Paulo; Jundiai

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_assembly_name: freshwater MAG --- Umea_bin-08041

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Pontimonas sp.

ncbi_submitter: Linnaeus University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Haemophilus parainfluenzae


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Capital and Coast

ncbi_isolation_source: Pernasal

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_assembly_name: IMG-taxon 2582581275 annotated assembly

ncbi_organism_name: Alkalibacter saccharofermentans DSM 14828

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC005132

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Wohlfahrtiimonas larvae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Castellaniella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Glutamicibacter sp.

ncbi_submitter: University of Western Australia


ncbi_organism_name: Corynebacterium mastitidis

ncbi_submitter: MIT


ncbi_organism_name: Streptomyces sp. NPDC048057


ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_isolation_source: blood

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: University of Nebraska Medical Center


ncbi_isolation_source: Red alga

ncbi_organism_name: Algimonas porphyrae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolate: Nitrospira sp. RBC069

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Nitrospira sp.

ncbi_strain_identifiers: Nitrospira sp. RBC069

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: ear swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Anaeromyxobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Roseibium sp. TrichSKD4

ncbi_submitter: Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 213

ncbi_submitter: SC


ncbi_country: Russia


ncbi_isolation_source: soil

ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: University of Queensland


ncbi_country: Germany: Luebeck

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_organism_name: Brevibacillus thermoruber PM1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pantoea sp. Ep11b

ncbi_submitter: Faculty of Biotechnology


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Jixi City; Heilongjiang Province

ncbi_isolation_source: coal mine

ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Guangzhou University of Chinese Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Microbacterium oxydans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_organism_name: Escherichia coli


ncbi_country: Israel: Ga ash

ncbi_submitter: Sheba medical center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D9_bin-0778

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: Leuconostoc suionicum

ncbi_submitter: EMG


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Universidad Autonoma del Estado de Morelos


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: AOP31_C2_surf _bin _10

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP31_C2_surf _bin _10

ncbi_submitter: Genoscope


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Xanthobacter autotrophicus

ncbi_submitter: Harvard Medical School


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Candidatus Kuenenia sp.

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__environmental samples;s__uncultured Candidatus Kuenenia sp.


ncbi_organism_name: Candidatus Faecivicinus avistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Faecivicinus;s__Candidatus Faecivicinus avistercoris


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan university


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Bacteroides ovatus


ncbi_organism_name: Neptunomonas phycophila

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: uncultured Pelolinea sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- Umea2_bin-0316

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: icddr,b


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus pyogenes ABC020006309

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Germany: RWTH Aachen University; Aachen

ncbi_organism_name: Kocuria tytonicola

ncbi_submitter: Institute of Pharmacy and Molecular Biotechnology


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0354

ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: Japan

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Yonsei University


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Enhydrobacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: flour/flour products

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Corynebacterium matruchotii ATCC 14266

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: SC


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: cow dung

ncbi_organism_name: Streptococcus equinus ATCC 33317

ncbi_submitter: Frederick National Laboratory for Cancer Research


ncbi_assembly_name: Escherichia coli O26:H11 21765

ncbi_organism_name: Escherichia coli O26:H11

ncbi_strain_identifiers: Escherichia coli O26:H11 21765

ncbi_submitter: VETAGROSUP


ncbi_isolation_source: Faeces


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_country: Thailand: Lat Krabang

ncbi_isolation_source: fresh seafood sold at markets and supermarkets located in Bangkok; Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_organism_name: Deinococcus sp. HSC-46F16

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Olsenella profusa

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: Rumen uncultured genome RUG12397

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Pennsylvania;Pittsburgh

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: USA: Boston

ncbi_isolation_source: Bile (fluid)

ncbi_organism_name: Klebsiella pneumoniae MGH 63

ncbi_strain_identifiers: MGH 63

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MGH 63


ncbi_country: China: Guangdong; Guangzhou

ncbi_isolation_source: blood

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter junii


ncbi_country: Spain

ncbi_organism_name: Escherichia coli

ncbi_submitter: IPLA - CSIC


ncbi_country: China: Qinghai Province

ncbi_isolation_source: soil

ncbi_organism_name: Marnyiella aurantia

ncbi_submitter: China CDC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Cuba: Nueva Paz

ncbi_isolation_source: Cloacal sample

ncbi_submitter: University of Bern


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Northwestern University


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-316

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-316


ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_isolation_source: pork

ncbi_submitter: USDA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_country: China: Guangdong

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_country: Chile

ncbi_isolation_source: Surface wound of a diseased fine flounder; Paralichthys adspersus

ncbi_organism_name: Vibrio tapetis subsp. quintayensis

ncbi_strain_identifiers: CECT 8851

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: uncultured Neisseriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: Brazil: Amazon rainforest; Hatahara archaeological site

ncbi_isolation_source: non-axenic culture of a cyanobacterium and its heterotrophs; obtained from an Amazon rainforest soil sample

ncbi_organism_name: Fischerella sp. CENA71

ncbi_submitter: USP


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: IMG-taxon 2634166322 annotated assembly

ncbi_organism_name: Clostridium gasigenes

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Nocardia farcinica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Chicago


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Veillonellaceae bacterium AM110-75

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile CD206

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus nitratireducens

ncbi_submitter: BGI


ncbi_assembly_name: Rumen uncultured genome RUG13846

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Kansas

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: Rumen uncultured genome RUG599

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_isolation_source: root canal

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Florida


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_country: South Africa

ncbi_isolation_source: Spinach

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: UPMP 767

ncbi_submitter: University of Pretoria


ncbi_organism_name: Ileibacterium valens

ncbi_submitter: Nanjing University


ncbi_organism_name: Ascidiaceihabitans sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Cryobacterium sp. 10I1

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL010134

ncbi_submitter: Broad Institute


ncbi_country: China: Zhejiang

ncbi_isolation_source: urine

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_country: China: NanChang

ncbi_isolation_source: whole chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Plant roots

ncbi_organism_name: Caballeronia novacaledonica

ncbi_submitter: LM-UGent


ncbi_country: USA: New Mexico

ncbi_isolation_source: feces

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_assembly_name: freshwater MAG --- Loc090907-5m_bin-765

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces sp. AD55

ncbi_submitter: Yildiz Technical University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Arthrobacter oryzae

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: Enterococcus sp. AZ095a


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Porto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Salmonella sp. SJTUF15587

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_isolate: AOP28_A2_surf _bin _7

ncbi_organism_name: Microbacterium sp.

ncbi_strain_identifiers: AOP28_A2_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Leptospira interrogans serovar Australis

ncbi_strain_identifiers: USDA ARL-010

ncbi_submitter: USDA


ncbi_organism_name: Klebsiella sp. H76

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Ruminobacter sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Candidatus Borkfalkia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Christensenellales;f__Christensenellaceae;g__Candidatus Borkfalkia;x__unclassified Candidatus Borkfalkia;s__Candidatus Borkfalkia sp.


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Methylohalobius sp. ZOD2

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Cincinatti

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: St. Louis

ncbi_isolation_source: Connective tissue

ncbi_organism_name: Acinetobacter sp. WU_MDCI_Abxd143

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: EMG


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Psychromonas sp.

ncbi_submitter: marine college, shandong university


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0863

ncbi_submitter: Broad Institute


ncbi_isolation_source: Volcanic sediment

ncbi_organism_name: Limnobacter litoralis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: water

ncbi_organism_name: Ferrovaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Prevotella histicola


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Brazil

ncbi_isolation_source: Meconium

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: tracheal secretions from Non-CF patient

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1025S


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_isolation_source: top surface soil

ncbi_organism_name: Spirosoma utsteinense

ncbi_submitter: Ghent University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: China: Niulanshan Winery

ncbi_isolation_source: Fermented grains

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli BIDMC 38

ncbi_strain_identifiers: BIDMC 38


ncbi_organism_name: Sphingomonadaceae bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Selenomonadales bacterium UBA3815

ncbi_submitter: University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Japan: Iwanaii

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: USA: MD

ncbi_isolation_source: Baby Wipes

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_country: Singapore

ncbi_isolation_source: Farm water

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: Italy: Cesena

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_country: USA: Arizona

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_organism_name: Chloroflexaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Virginia Tech Carilion School of Medicine, Carilion Clinic, Virginia Tech Polytechnic


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Korea Food Research Institute


ncbi_country: Mexico: Guadalajara

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Candidatus Eremiobacteraceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Candidatus Eremiobacterales;f__Candidatus Eremiobacteraceae;x__unclassified Candidatus Eremiobacteraceae;s__Candidatus Eremiobacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Variovorax guangxiensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1283

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE2

ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobium sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolate: OKLCSY

ncbi_organism_name: Chromatiales bacterium

ncbi_strain_identifiers: OKLCSY

ncbi_submitter: Institute of Oceanology, Chinese academy of sciences


ncbi_organism_name: Streptomyces sp. NPDC001127

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Oxford


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Qingdao County; Shandong Province

ncbi_isolation_source: soli

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Shandong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R383;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: bovine lymph node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: Ruthenibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Candidatus Tisiphia;x__unclassified Candidatus Tisiphia;s__Candidatus Tisiphia endosymbiont of Metellina segmentata


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Sichuan University


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Streptomyces hydrogenans


ncbi_organism_name: Aeromonas sobria


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: CIRMBP-1228 assembly

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: INRAE


ncbi_organism_name: Pirellulales bacterium


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: Yantai University


ncbi_organism_name: Dorea sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Flavobacteriales bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. SARA13


ncbi_isolation_source: pork salami

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- MJ120620A_bin-798

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii 1656-2

ncbi_submitter: Kyungpook National University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Marivita cryptomonadis

ncbi_submitter: Shantou University


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine Faeces

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Uganda

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis Bz 31150


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Aestuariimicrobium sp. G57

ncbi_submitter: Shanxi Medical University


ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Washington


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA:New York City

ncbi_isolation_source: New York City MTA subway

ncbi_organism_name: Corynebacteriaceae bacterium UBA3250

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: Canada

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National University of Singapore


ncbi_country: Thailand

ncbi_isolation_source: trachea

ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Yunnan

ncbi_organism_name: Actinomadura alba

ncbi_submitter: Hebei University


ncbi_organism_name: Pseudomonas yamanorum

ncbi_submitter: University of British Columbia


ncbi_organism_name: Xanthomonas sp. WHRI 7064

ncbi_strain_identifiers: WHRI 7064

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Akkermansia muciniphila


ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Costa Rica:Cuenca Murcielago

ncbi_isolation_source: Cuenca Murcielago travertine

ncbi_organism_name: Hyphomonadaceae bacterium UBA1001


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: IL

ncbi_isolation_source: root

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Nautiliales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan

ncbi_isolation_source: Bos taurus

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf077

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Candidatus Phytoplasma mali

ncbi_strain_identifiers: AT

ncbi_submitter: Federal Biological Research Center for Agriculture and Forestry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrX (Apple proliferation group);s__Candidatus Phytoplasma mali


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KLEB-LEB

ncbi_submitter: LAU


ncbi_country: United Kingdom

ncbi_organism_name: Candidatus Cibiobacter qucibialis

ncbi_submitter: University of Trento

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Cibiobacter;s__Candidatus Cibiobacter qucibialis


ncbi_country: Netherlands

ncbi_submitter: Monash University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroides fluxus

ncbi_submitter: EMG


ncbi_isolate: CB1 bin31

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: CB1 bin31

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: AR

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: China: Qinling Mountains; Shanxi Province

ncbi_organism_name: Streptomyces sp. CB02488

ncbi_submitter: The Scripps Research Institute


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Anhui

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Huaibei Normal University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: Clavibacter sp. Sh2141

ncbi_submitter: University of Tehran


ncbi_organism_name: Amycolatopsis japonica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bartonella sp. MM55XZML

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Pseudomonas sp. 22082

ncbi_submitter: Yantai University


ncbi_organism_name: Mycoplasma marinum

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-264

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Anaerolineae bacterium

ncbi_strain_identifiers: new MAG-264

ncbi_submitter: Micoorganism


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Thessaly


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Tengchong

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Flavobacterium aquidurense

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Conexibacteraceae bacterium


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Kiel University


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter colistiniresistens

ncbi_submitter: Toho University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG12800

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_country: Mexico: Sinaloa; El Dorado

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CIAD, A.C.


ncbi_isolation_source: human-gut

ncbi_organism_name: Hafnia sp. CBA7124

ncbi_submitter: Korea Basic Science Institute


ncbi_country: Italy: Province of Bologna

ncbi_organism_name: Campylobacter vulpis

ncbi_submitter: C. vulpis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: Shrimp meat

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Fuerstiella sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Photobacterium piscicola

ncbi_submitter: University Of Tasmania, Tasmania Inst Agriculture


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_assembly_name: Rumen uncultured genome RUG14171


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Slovenia

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Paraburkholderia bannensis

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: USA: Heater Creek arm; Detroit Lake; Oregon

ncbi_isolation_source: lake water

ncbi_organism_name: Dolichospermum sp. DET67

ncbi_submitter: Oregon State University


ncbi_country: Poland

ncbi_isolation_source: Slow sand biofilter

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Neuchatel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Jyvaskyla


ncbi_country: Brazil

ncbi_isolation_source: skin lesion

ncbi_organism_name: Mannheimia granulomatis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: ileum

ncbi_organism_name: Ligilactobacillus saerimneri

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: river water

ncbi_organism_name: Curvibacter sp. PAE-UM

ncbi_strain_identifiers: PAE-UM

ncbi_submitter: Nankai University


ncbi_isolation_source: fish farm water

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: United Kingdom: London

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Brigham Young University